Uses of Class
org.hkijena.jipipe.api.JIPipeProgressInfo

Packages that use JIPipeProgressInfo

Package	Description
org.hkijena.jipipe
org.hkijena.jipipe.api
org.hkijena.jipipe.api.annotation
org.hkijena.jipipe.api.compartments
org.hkijena.jipipe.api.compartments.algorithms
org.hkijena.jipipe.api.compartments.datatypes
org.hkijena.jipipe.api.compat
org.hkijena.jipipe.api.data
org.hkijena.jipipe.api.data.storage
org.hkijena.jipipe.api.environments
org.hkijena.jipipe.api.grouping
org.hkijena.jipipe.api.looping
org.hkijena.jipipe.api.nodes
org.hkijena.jipipe.extensions.annotation
org.hkijena.jipipe.extensions.annotation.algorithms
org.hkijena.jipipe.extensions.annotation.datasources
org.hkijena.jipipe.extensions.batchassistant
org.hkijena.jipipe.extensions.cellpose
org.hkijena.jipipe.extensions.cellpose.algorithms
org.hkijena.jipipe.extensions.cellpose.algorithms.deprecated
org.hkijena.jipipe.extensions.cellpose.compat
org.hkijena.jipipe.extensions.cellpose.datatypes
org.hkijena.jipipe.extensions.clij2
org.hkijena.jipipe.extensions.clij2.algorithms
org.hkijena.jipipe.extensions.clij2.compat
org.hkijena.jipipe.extensions.clij2.datatypes
org.hkijena.jipipe.extensions.core
org.hkijena.jipipe.extensions.core.data
org.hkijena.jipipe.extensions.core.nodes
org.hkijena.jipipe.extensions.expressions
org.hkijena.jipipe.extensions.filesystem
org.hkijena.jipipe.extensions.filesystem.algorithms
org.hkijena.jipipe.extensions.filesystem.compat
org.hkijena.jipipe.extensions.filesystem.datasources
org.hkijena.jipipe.extensions.filesystem.dataypes
org.hkijena.jipipe.extensions.forms
org.hkijena.jipipe.extensions.forms.algorithms
org.hkijena.jipipe.extensions.forms.datatypes
org.hkijena.jipipe.extensions.ijmultitemplatematching
org.hkijena.jipipe.extensions.ijtrackmate
org.hkijena.jipipe.extensions.ijtrackmate.datatypes
org.hkijena.jipipe.extensions.ijtrackmate.display.algorithms
org.hkijena.jipipe.extensions.ijtrackmate.display.spots
org.hkijena.jipipe.extensions.ijtrackmate.display.tracks
org.hkijena.jipipe.extensions.ijtrackmate.display.trackscheme
org.hkijena.jipipe.extensions.ijtrackmate.nodes.converters
org.hkijena.jipipe.extensions.ijtrackmate.nodes.detectors
org.hkijena.jipipe.extensions.ijtrackmate.nodes.spots
org.hkijena.jipipe.extensions.ijtrackmate.nodes.tracks
org.hkijena.jipipe.extensions.ijtrackmate.utils
org.hkijena.jipipe.extensions.ijweka
org.hkijena.jipipe.extensions.ijweka.datatypes
org.hkijena.jipipe.extensions.ijweka.nodes
org.hkijena.jipipe.extensions.imagej2
org.hkijena.jipipe.extensions.imagej2.algorithms
org.hkijena.jipipe.extensions.imagej2.compat
org.hkijena.jipipe.extensions.imagej2.datatypes
org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds
org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds.constant
org.hkijena.jipipe.extensions.imagej2.datatypes.shapes
org.hkijena.jipipe.extensions.imagej2.io
org.hkijena.jipipe.extensions.imagej2.io.data.input
org.hkijena.jipipe.extensions.imagej2.io.data.output
org.hkijena.jipipe.extensions.imagej2.io.parameters.input
org.hkijena.jipipe.extensions.imagej2.io.parameters.output
org.hkijena.jipipe.extensions.imagej2.util
org.hkijena.jipipe.extensions.imagejalgorithms
org.hkijena.jipipe.extensions.imagejalgorithms.ij1
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.calibration
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.colocalization
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convert
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.forms
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.labels
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.labels.filter
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.distancemap
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.local
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.opticalflow
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.overlay
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.annotations
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.assemble
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.convert
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.draw
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.filter
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.generate
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.measure
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.merge
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.modify
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.properties
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.sort
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.split
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.segment
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.sharpen
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.color
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.iterative
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.local
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform
org.hkijena.jipipe.extensions.imagejalgorithms.utils
org.hkijena.jipipe.extensions.imagejdatatypes
org.hkijena.jipipe.extensions.imagejdatatypes.algorithms
org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.color
org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.datasources
org.hkijena.jipipe.extensions.imagejdatatypes.colorspace
org.hkijena.jipipe.extensions.imagejdatatypes.compat
org.hkijena.jipipe.extensions.imagejdatatypes.datatypes
org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color
org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2
org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color
org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale
org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3
org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color
org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale
org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4
org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color
org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale
org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5
org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color
org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale
org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft
org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale
org.hkijena.jipipe.extensions.imagejdatatypes.display
org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis
org.hkijena.jipipe.extensions.imagejdatatypes.util
org.hkijena.jipipe.extensions.imageviewer
org.hkijena.jipipe.extensions.jsonextensionloader
org.hkijena.jipipe.extensions.multiparameters
org.hkijena.jipipe.extensions.multiparameters.datatypes
org.hkijena.jipipe.extensions.multiparameters.nodes
org.hkijena.jipipe.extensions.nodetemplate
org.hkijena.jipipe.extensions.nodetemplate.templatedownloader
org.hkijena.jipipe.extensions.omero
org.hkijena.jipipe.extensions.omero.algorithms
org.hkijena.jipipe.extensions.omero.datasources
org.hkijena.jipipe.extensions.omero.datatypes
org.hkijena.jipipe.extensions.omero.util
org.hkijena.jipipe.extensions.omnipose
org.hkijena.jipipe.extensions.omnipose.algorithms
org.hkijena.jipipe.extensions.parameters
org.hkijena.jipipe.extensions.pipelinerender
org.hkijena.jipipe.extensions.plots
org.hkijena.jipipe.extensions.plots.datatypes
org.hkijena.jipipe.extensions.plots.nodes
org.hkijena.jipipe.extensions.processes
org.hkijena.jipipe.extensions.python
org.hkijena.jipipe.extensions.python.algorithms
org.hkijena.jipipe.extensions.python.installers
org.hkijena.jipipe.extensions.r
org.hkijena.jipipe.extensions.r.algorithms
org.hkijena.jipipe.extensions.r.installers
org.hkijena.jipipe.extensions.settings
org.hkijena.jipipe.extensions.strings
org.hkijena.jipipe.extensions.strings.datasources
org.hkijena.jipipe.extensions.tables
org.hkijena.jipipe.extensions.tables.compat
org.hkijena.jipipe.extensions.tables.datatypes
org.hkijena.jipipe.extensions.tables.display
org.hkijena.jipipe.extensions.tables.nodes
org.hkijena.jipipe.extensions.tables.nodes.annotations
org.hkijena.jipipe.extensions.tables.nodes.columns
org.hkijena.jipipe.extensions.tables.nodes.filter
org.hkijena.jipipe.extensions.tables.nodes.merge
org.hkijena.jipipe.extensions.tables.nodes.rows
org.hkijena.jipipe.extensions.tables.nodes.split
org.hkijena.jipipe.extensions.tables.nodes.transform
org.hkijena.jipipe.extensions.tools
org.hkijena.jipipe.extensions.utils
org.hkijena.jipipe.extensions.utils.algorithms
org.hkijena.jipipe.extensions.utils.algorithms.datatable
org.hkijena.jipipe.extensions.utils.algorithms.distribute
org.hkijena.jipipe.extensions.utils.algorithms.meta
org.hkijena.jipipe.extensions.utils.algorithms.processes
org.hkijena.jipipe.extensions.utils.datatypes
org.hkijena.jipipe.ui
org.hkijena.jipipe.ui.cache
org.hkijena.jipipe.ui.cache.exporters
org.hkijena.jipipe.ui.cache.importers
org.hkijena.jipipe.ui.data
org.hkijena.jipipe.ui.documentation
org.hkijena.jipipe.ui.extensions
org.hkijena.jipipe.ui.ijupdater
org.hkijena.jipipe.ui.project
org.hkijena.jipipe.ui.project.templatedownloader
org.hkijena.jipipe.ui.quickrun
org.hkijena.jipipe.ui.resultanalysis
org.hkijena.jipipe.utils

Uses of JIPipeProgressInfo in org.hkijena.jipipe

Methods in org.hkijena.jipipe that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	JIPipe.getProgressInfo()

Methods in org.hkijena.jipipe with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	JIPipe.checkUpdateSites(JIPipeRegistryIssues issues, List<JIPipeDependency> extensions, Progress progressAdapter, JIPipeProgressInfo progressInfo) Checks the update sites of all extensions and stores the results in the issues
static <T extends JIPipeData> T	JIPipe.importData(JIPipeReadDataStorage storage, Class<T> klass, JIPipeProgressInfo progressInfo) Imports data of given data type from its output folder.
void	JIPipeJavaExtension.register(JIPipe jiPipe, Context context, JIPipeProgressInfo progressInfo) Registers custom modules into JIPipe
void	JIPipe.register(JIPipeJsonExtension extension, JIPipeProgressInfo progressInfo) Registers a JSON extension

Uses of JIPipeProgressInfo in org.hkijena.jipipe.api

Subclasses of JIPipeProgressInfo in org.hkijena.jipipe.api

Modifier and Type	Class and Description
class	JIPipePercentageProgressInfo A JIPipeProgressInfo that logs the progress of 0 to 100 percent.

Methods in org.hkijena.jipipe.api that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	JIPipeProgressInfo.detachProgress() Creates a sub-progress that detaches the references to the global process counters.
JIPipeProgressInfo	JIPipeRunnable.getProgressInfo() The info object that allows communication with the run
JIPipeProgressInfo	JIPipeGraphRunner.getProgressInfo()
JIPipeProgressInfo	JIPipeProgressInfoOutputStream.getProgressInfo()
JIPipeProgressInfo	JIPipeProjectRun.getProgressInfo()
JIPipeProgressInfo	JIPipeProgressInfo.StatusUpdatedEvent.getSource()
JIPipeProgressInfo	JIPipeProgressInfo.resolve(String logPrepend) Creates a sub-progress that has the same cancellation and progress, but shows the new category in front of sub-messages
JIPipeProgressInfo	JIPipeProgressInfo.resolve(String text, int index, int size) Creates a sub-progress that has the same cancellation and progress, but shows the new category in front of sub-messages.
JIPipeProgressInfo	JIPipeProgressInfo.resolveAndLog(String logPrepend) Applies resolve(logPrepend) and then logs an empty message
JIPipeProgressInfo	JIPipeProgressInfo.resolveAndLog(String text, int index, int size) Creates a sub-progress that has the same cancellation and progress, but shows the new category in front of sub-messages.

Methods in org.hkijena.jipipe.api with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	JIPipeProjectCache.autoClean(boolean compareSlots, boolean compareProjectStates, JIPipeProgressInfo progressInfo) Safely removes cache entries that are not accessible anymore (e.g. an algorithm was removed from the graph; or states where the slots do not exist anymore)
void	JIPipeProjectCache.makeNonVirtual(JIPipeProgressInfo progress) Makes the whole cache virtual
void	JIPipeProjectCache.makeVirtual(JIPipeProgressInfo progress) Makes the whole cache virtual
void	JIPipeRunnable.setProgressInfo(JIPipeProgressInfo progressInfo) Sets the progress info of this runnable
void	JIPipeGraphRunner.setProgressInfo(JIPipeProgressInfo progressInfo)
void	JIPipeProjectRun.setProgressInfo(JIPipeProgressInfo progressInfo)
void	JIPipeProjectCache.store(JIPipeGraphNode source, JIPipeProjectCacheState stateId, JIPipeDataSlot slot, JIPipeProgressInfo progressInfo) Stores data into the cache

Method parameters in org.hkijena.jipipe.api with type arguments of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	JIPipeProgressInfo.resolveAndLogForEach(String text, byte[] collection, BiConsumer<Byte,JIPipeProgressInfo> function) Applies a for-each operation where the progress is logged
<T> void	JIPipeProgressInfo.resolveAndLogForEach(String text, Collection<T> collection, BiConsumer<T,JIPipeProgressInfo> function) Applies a for-each operation where the progress is logged
void	JIPipeProgressInfo.resolveAndLogForEach(String text, double[] collection, BiConsumer<Double,JIPipeProgressInfo> function) Applies a for-each operation where the progress is logged
void	JIPipeProgressInfo.resolveAndLogForEach(String text, float[] collection, BiConsumer<Float,JIPipeProgressInfo> function) Applies a for-each operation where the progress is logged
void	JIPipeProgressInfo.resolveAndLogForEach(String text, int[] collection, BiConsumer<Integer,JIPipeProgressInfo> function) Applies a for-each operation where the progress is logged
void	JIPipeProgressInfo.resolveAndLogForEach(String text, long[] collection, BiConsumer<Long,JIPipeProgressInfo> function) Applies a for-each operation where the progress is logged
void	JIPipeProgressInfo.resolveAndLogForEach(String text, short[] collection, BiConsumer<Short,JIPipeProgressInfo> function) Applies a for-each operation where the progress is logged
<T> void	JIPipeProgressInfo.resolveAndLogForEach(String text, T[] collection, BiConsumer<T,JIPipeProgressInfo> function) Applies a for-each operation where the progress is logged

Constructors in org.hkijena.jipipe.api with parameters of type JIPipeProgressInfo

Constructor and Description
JIPipePercentageProgressInfo(JIPipeProgressInfo other)
JIPipeProgressInfo(JIPipeProgressInfo other)
JIPipeProgressInfoOutputStream(JIPipeProgressInfo progressInfo)
StatusUpdatedEvent(JIPipeProgressInfo source, int progress, int maxProgress, String message)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.api.annotation

Methods in org.hkijena.jipipe.api.annotation with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeDataAnnotation	JIPipeDataAnnotation.duplicate(JIPipeProgressInfo progressInfo) Fully duplicates the data
<T extends JIPipeData> T	JIPipeDataAnnotation.getData(Class<T> klass, JIPipeProgressInfo progressInfo)
void	JIPipeDataByMetadataExporter.writeToFolder(JIPipeDataTable dataTable, int row, Path outputPath, JIPipeProgressInfo progressInfo) Writes data to the specified folder
void	JIPipeDataByMetadataExporter.writeToFolder(JIPipeDataTable dataTable, int row, Path outputPath, JIPipeProgressInfo progressInfo, Set<String> existingMetadata) Writes data to the specified folder
void	JIPipeDataByMetadataExporter.writeToFolder(JIPipeDataTable dataTable, Path outputPath, JIPipeProgressInfo progressInfo) Writes data to the specified folder
void	JIPipeDataByMetadataExporter.writeToFolder(JIPipeDataTable dataTable, Path outputPath, JIPipeProgressInfo progressInfo, Set<String> existingMetadata) Writes data to the specified folder
void	JIPipeDataByMetadataExporter.writeToFolder(List<? extends JIPipeDataTable> dataTableList, Path outputPath, JIPipeProgressInfo progressInfo) Writes data to the specified folder

Uses of JIPipeProgressInfo in org.hkijena.jipipe.api.compartments

Methods in org.hkijena.jipipe.api.compartments with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	JIPipeCompartmentsExtension.register(JIPipe jiPipe, Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.api.compartments.algorithms

Methods in org.hkijena.jipipe.api.compartments.algorithms with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	IOInterfaceAlgorithm.run(JIPipeProgressInfo progressInfo)
void	JIPipeProjectCompartment.run(JIPipeProgressInfo progressInfo)
protected void	IOInterfaceAlgorithm.runPassThrough(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.api.compartments.datatypes

Methods in org.hkijena.jipipe.api.compartments.datatypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	JIPipeCompartmentOutputData.duplicate(JIPipeProgressInfo progressInfo)
void	JIPipeCompartmentOutputData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static JIPipeCompartmentOutputData	JIPipeCompartmentOutputData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.api.compat

Methods in org.hkijena.jipipe.api.compat with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
List<Object>	ImageJDataExportOperation.apply(JIPipeDataTable dataTable, JIPipeProgressInfo progressInfo)
JIPipeDataTable	ImageJDataImportOperation.apply(List<Object> objects, JIPipeProgressInfo progressInfo)
default List<Object>	ImageJDataExporter.exportData(JIPipeData data, ImageJExportParameters parameters, JIPipeProgressInfo progressInfo) Converts a JIPipe data type to its corresponding ImageJ data type
List<Object>	EmptyImageJDataExporter.exportData(JIPipeDataTable dataTable, ImageJExportParameters parameters, JIPipeProgressInfo progressInfo)
List<Object>	ImageJDataExporter.exportData(JIPipeDataTable dataTable, ImageJExportParameters parameters, JIPipeProgressInfo progressInfo) Converts a JIPipe data type to its corresponding ImageJ data type
List<Object>	DataTableImageJDataExporter.exportData(JIPipeDataTable dataTable, ImageJExportParameters properties, JIPipeProgressInfo progressInfo)
void	SingleImageJAlgorithmRunConfiguration.exportOutputToImageJ(JIPipeProgressInfo progressInfo) Extracts algorithm output into ImageJ.
JIPipeDataTable	ImageJDataImporter.importData(List<Object> objects, ImageJImportParameters parameters, JIPipeProgressInfo progressInfo) Imports JIPipe data from ImageJ
JIPipeDataTable	EmptyImageJDataImporter.importData(List<Object> objects, ImageJImportParameters parameters, JIPipeProgressInfo progressInfo)
JIPipeDataTable	DataTableImageJDataImporter.importData(List<Object> objects, ImageJImportParameters parameters, JIPipeProgressInfo progressInfo)
default JIPipeData	ImageJDataImporter.importData(Object object, ImageJImportParameters parameters, JIPipeProgressInfo progressInfo) Imports JIPipe data from ImageJ.
void	SingleImageJAlgorithmRunConfiguration.importInputsFromImageJ(JIPipeProgressInfo progressInfo) Pushes selected ImageJ data into the algorithm input slots

Uses of JIPipeProgressInfo in org.hkijena.jipipe.api.data

Methods in org.hkijena.jipipe.api.data that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	JIPipeDataDisplayWrapperImportOperation.ImportDataRun.getProgressInfo()

Methods in org.hkijena.jipipe.api.data with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	JIPipeDataTable.addData(JIPipeData value, JIPipeProgressInfo progressInfo) Adds a data row
void	JIPipeDataTable.addData(JIPipeData value, List<JIPipeTextAnnotation> annotations, JIPipeTextAnnotationMergeMode mergeStrategy, JIPipeProgressInfo progressInfo) Adds a data row
void	JIPipeDataTable.addData(JIPipeDataSlot sourceSlot, JIPipeProgressInfo progressInfo) Copies the source slot into this slot.
void	JIPipeDataTable.addFromTable(JIPipeDataTable table, JIPipeProgressInfo progressInfo) Merges the data from the source table into the current one
void	JIPipeDataSlot.applyVirtualState(JIPipeProgressInfo progressInfo) If virtual, put all data into the virtual storage If not, fetch all virtual data from storage This function reacts to the virtual mode setting in VirtualDataSettings and will refuse to make data virtual
void	JIPipeDataTable.convert(Class<? extends JIPipeData> dataClass, JIPipeProgressInfo progressInfo) Converts this data table in-place and sets the accepted data type
JIPipeData	JIPipeDataTable.duplicate(JIPipeProgressInfo progressInfo)
JIPipeVirtualData	JIPipeVirtualData.duplicate(JIPipeProgressInfo progressInfo) Fully duplicates the virtual data
JIPipeData	JIPipeEmptyData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	JIPipeSerializedJsonObjectData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	JIPipeSerializedParameterCollectionData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	JIPipeData.duplicate(JIPipeProgressInfo progressInfo) Duplicates the data
void	JIPipeDataTable.exportData(JIPipeWriteDataStorage storage, JIPipeProgressInfo saveProgress) Saves the data contained in this slot into the storage path.
void	JIPipeDataTable.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	JIPipeEmptyData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	JIPipeSerializedJsonObjectData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	JIPipeSerializedParameterCollectionData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	JIPipeData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo) Saves the data to a folder
default void	JIPipeData.exportThumbnails(JIPipeWriteDataStorage storage, Path target, List<Dimension> sizes, JIPipeProgressInfo progressInfo) Exports the thumbnails/previews of this data into the provided storage
void	JIPipeDataSlot.exportToSlotStoragePath(JIPipeProgressInfo saveProgress) Saves the data to the storage path Info: This method only works for output slots and saves to the storage path.
void	JIPipeDataSlot.flush(JIPipeProgressInfo saveProgress) Saves the stored data to the provided storage path and sets data to null Warning: Ensure that depending input slots do not use this slot, anymore!
<T extends JIPipeData> List<T>	JIPipeDataTable.getAllData(Class<T> dataClass, JIPipeProgressInfo progressInfo) Gets all the data stored in a specific row.
<T extends JIPipeData> T	JIPipeVirtualData.getData(Class<T> klass, JIPipeProgressInfo progressInfo) Gets the currently stored data.
<T extends JIPipeData> T	JIPipeDataTable.getData(int row, Class<T> dataClass, JIPipeProgressInfo progressInfo) Gets the data stored in a specific row.
JIPipeData	JIPipeVirtualData.getData(JIPipeProgressInfo progressInfo) Gets the currently stored data
static JIPipeDataTable	JIPipeDataTable.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo) Imports this data from the path
static JIPipeEmptyData	JIPipeEmptyData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static JIPipeData	JIPipeSerializedParameterCollectionData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
void	JIPipeDataTable.makeDataNonVirtual(JIPipeProgressInfo progressInfo, boolean removeVirtualDataStorage) Loads all virtual data into memory
void	JIPipeDataTable.makeDataVirtual(JIPipeProgressInfo progressInfo) Unloads all data into the virtual cache
void	JIPipeVirtualData.makeNonVirtual(JIPipeProgressInfo progressInfo, boolean removeVirtualDataStorage)
void	JIPipeVirtualData.makeVirtual(JIPipeProgressInfo progressInfo, boolean discard) Makes the data virtual if not already
void	JIPipeDataDisplayWrapperImportOperation.ImportDataRun.setProgressInfo(JIPipeProgressInfo progressInfo)
JIPipeData	JIPipeDataImportOperation.show(JIPipeDataSlot slot, JIPipeDataTableMetadataRow row, String dataAnnotationName, Path rowStorageFolder, String compartmentName, String algorithmName, String displayName, JIPipeWorkbench workbench, JIPipeProgressInfo progressInfo) Imports the data and shows it
JIPipeData	JIPipeDataDisplayWrapperImportOperation.show(JIPipeDataSlot slot, JIPipeDataTableMetadataRow row, String dataAnnotationName, Path rowStorageFolder, String compartmentName, String algorithmName, String displayName, JIPipeWorkbench workbench, JIPipeProgressInfo progressInfo)

Constructors in org.hkijena.jipipe.api.data with parameters of type JIPipeProgressInfo

Constructor and Description
JIPipeDataSlot(JIPipeDataSlot other, boolean shallow, JIPipeProgressInfo progressInfo)
JIPipeDataTable(JIPipeDataTable other, boolean shallow, JIPipeProgressInfo progressInfo)
JIPipeInputDataSlot(JIPipeDataSlot other, boolean shallow, JIPipeProgressInfo progressInfo)
JIPipeOutputDataSlot(JIPipeDataSlot other, boolean shallow, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.api.data.storage

Methods in org.hkijena.jipipe.api.data.storage that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	JIPipeFileSystemWriteDataStorage.getProgressInfo()
JIPipeProgressInfo	JIPipeFileSystemReadDataStorage.getProgressInfo()
JIPipeProgressInfo	JIPipeZIPWriteDataStorage.getProgressInfo()
JIPipeProgressInfo	JIPipeZIPReadDataStorage.getProgressInfo()
JIPipeProgressInfo	JIPipeDataStorage.getProgressInfo() Returns the JIPipeProgressInfo instance where information is logged

Constructors in org.hkijena.jipipe.api.data.storage with parameters of type JIPipeProgressInfo

Constructor and Description
JIPipeFileSystemReadDataStorage(JIPipeProgressInfo progressInfo, Path fileSystemPath)
JIPipeFileSystemReadDataStorage(JIPipeProgressInfo progressInfo, Path fileSystemPath, Path internalPath)
JIPipeFileSystemWriteDataStorage(JIPipeProgressInfo progressInfo, Path fileSystemPath)
JIPipeFileSystemWriteDataStorage(JIPipeProgressInfo progressInfo, Path fileSystemPath, Path internalPath)
JIPipeZIPReadDataStorage(JIPipeProgressInfo progressInfo, Path zipFilePath)
JIPipeZIPWriteDataStorage(JIPipeProgressInfo progressInfo, Path zipFilePath)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.api.environments

Methods in org.hkijena.jipipe.api.environments that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	EasyInstallExternalEnvironmentInstaller.getProgressInfo()

Methods in org.hkijena.jipipe.api.environments with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	EasyInstallExternalEnvironmentInstaller.setProgressInfo(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.api.grouping

Methods in org.hkijena.jipipe.api.grouping with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
List<JIPipeMergingDataBatch>	GraphWrapperAlgorithm.generateDataBatchesDryRun(List<JIPipeInputDataSlot> slots, JIPipeProgressInfo progressInfo)
void	GroupingExtension.register(JIPipe jiPipe, Context context, JIPipeProgressInfo progressInfo)
void	GraphWrapperAlgorithm.run(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.api.looping

Methods in org.hkijena.jipipe.api.looping with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
List<JIPipeMergingDataBatch>	LoopStartNode.generateDataBatchesDryRun(List<JIPipeInputDataSlot> slots, JIPipeProgressInfo progressInfo)
void	LoopingExtension.register(JIPipe jiPipe, Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.api.nodes

Methods in org.hkijena.jipipe.api.nodes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	JIPipeDataBatch.addOutputData(JIPipeDataSlot slot, JIPipeData data, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
void	JIPipeMergingDataBatch.addOutputData(JIPipeDataSlot slot, JIPipeData data, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
void	JIPipeDataBatch.addOutputData(JIPipeDataSlot slot, JIPipeData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode mergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
void	JIPipeMergingDataBatch.addOutputData(JIPipeDataSlot slot, JIPipeData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode mergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
void	JIPipeDataBatch.addOutputData(JIPipeDataSlot slot, JIPipeData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode mergeStrategy, List<JIPipeDataAnnotation> additionalDataAnnotations, JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
void	JIPipeMergingDataBatch.addOutputData(JIPipeDataSlot slot, JIPipeData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode mergeStrategy, List<JIPipeDataAnnotation> additionalDataAnnotations, JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
void	JIPipeDataBatch.addOutputData(JIPipeDataSlot slot, JIPipeVirtualData virtualData, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode mergeStrategy, List<JIPipeDataAnnotation> additionalDataAnnotations, JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
void	JIPipeDataBatch.addOutputData(String slotName, JIPipeData data, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations should be set up till this point
void	JIPipeMergingDataBatch.addOutputData(String slotName, JIPipeData data, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations should be set up till this point
void	JIPipeMergingDataBatch.addOutputData(String slotName, JIPipeData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations should be set up till this point
void	JIPipeDataBatch.addOutputData(String slotName, JIPipeData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode mergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations should be set up till this point
void	JIPipeMergingDataBatch.addOutputData(String slotName, JIPipeData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode annotationMergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations should be set up till this point
void	JIPipeDataBatch.addOutputData(String slotName, JIPipeData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode mergeStrategy, List<JIPipeDataAnnotation> additionalDataAnnotations, JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations should be set up till this point
void	JIPipeMergingDataBatch.addOutputData(String slotName, JIPipeData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode mergeStrategy, List<JIPipeDataAnnotation> additionalDataAnnotations, JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations should be set up till this point
List<JIPipeMergingDataBatch>	JIPipeMergingDataBatchBuilder.build(JIPipeProgressInfo progressInfo)
List<JIPipeMergingDataBatch>	JIPipeSingleIterationAlgorithm.generateDataBatchesDryRun(List<JIPipeInputDataSlot> slots, JIPipeProgressInfo progressInfo)
List<JIPipeMergingDataBatch>	JIPipeIteratingMissingDataGeneratorAlgorithm.generateDataBatchesDryRun(List<JIPipeInputDataSlot> slots, JIPipeProgressInfo progressInfo)
List<JIPipeMergingDataBatch>	JIPipeMergingAlgorithm.generateDataBatchesDryRun(List<JIPipeInputDataSlot> slots, JIPipeProgressInfo progressInfo)
List<JIPipeMergingDataBatch>	JIPipeParameterlessSimpleIteratingAlgorithm.generateDataBatchesDryRun(List<JIPipeInputDataSlot> slots, JIPipeProgressInfo progressInfo)
List<JIPipeMergingDataBatch>	JIPipeMissingDataGeneratorAlgorithm.generateDataBatchesDryRun(List<JIPipeInputDataSlot> slots, JIPipeProgressInfo progressInfo)
List<JIPipeMergingDataBatch>	JIPipeIteratingAlgorithm.generateDataBatchesDryRun(List<JIPipeInputDataSlot> slots, JIPipeProgressInfo progressInfo)
List<JIPipeMergingDataBatch>	JIPipeSimpleIteratingAlgorithm.generateDataBatchesDryRun(List<JIPipeInputDataSlot> slots, JIPipeProgressInfo progressInfo)
List<JIPipeMergingDataBatch>	JIPipeDataBatchAlgorithm.generateDataBatchesDryRun(List<JIPipeInputDataSlot> slots, JIPipeProgressInfo progressInfo) Generates data batches.
<T extends JIPipeData> T	JIPipeDataBatch.getInputData(JIPipeDataSlot slot, Class<T> dataClass, JIPipeProgressInfo progressInfo) Gets stored data from an input slot
<T extends JIPipeData> List<T>	JIPipeMergingDataBatch.getInputData(JIPipeDataSlot slot, Class<T> dataClass, JIPipeProgressInfo progressInfo) Gets stored data from an input slot
<T extends JIPipeData> T	JIPipeDataBatch.getInputData(String slotName, Class<T> dataClass, JIPipeProgressInfo progressInfo) Gets stored data from an input slot
<T extends JIPipeData> List<T>	JIPipeMergingDataBatch.getInputData(String slotName, Class<T> dataClass, JIPipeProgressInfo progressInfo) Gets stored data from an input slot
void	JIPipeAlgorithm.run(JIPipeProgressInfo progressInfo)
void	JIPipeParameterlessSimpleIteratingAlgorithm.run(JIPipeProgressInfo progressInfo)
void	JIPipeParameterSlotAlgorithm.run(JIPipeProgressInfo progressInfo)
abstract void	JIPipeGraphNode.run(JIPipeProgressInfo progressInfo) Runs the workload
protected abstract void	JIPipeIteratingMissingDataGeneratorAlgorithm.runGenerator(JIPipeMergingDataBatch dataBatch, JIPipeDataSlot inputSlot, JIPipeDataSlot outputSlot, JIPipeProgressInfo progressInfo) Generates data and puts the output into the specified output slot
protected abstract void	JIPipeMissingDataGeneratorAlgorithm.runGenerator(JIPipeMergingDataBatch dataBatch, JIPipeDataSlot inputSlot, JIPipeDataSlot outputSlot, JIPipeProgressInfo progressInfo) Generates data and puts the output into the specified output slot
protected abstract void	JIPipeParameterlessSimpleIteratingAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo) Runs code on one data row
protected abstract void	JIPipeIteratingAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo) Runs code on one data row
protected abstract void	JIPipeSimpleIteratingAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo) Runs code on one data row
protected abstract void	JIPipeSingleIterationAlgorithm.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo) Runs code on one data row
protected void	JIPipeIteratingMissingDataGeneratorAlgorithm.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo) Runs code on one data row
protected abstract void	JIPipeMergingAlgorithm.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo) Runs code on one data row
protected void	JIPipeMissingDataGeneratorAlgorithm.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo) Runs code on one data row
void	JIPipeSingleIterationAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	JIPipeIteratingMissingDataGeneratorAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	JIPipeMergingAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
abstract void	JIPipeParameterSlotAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations) Runs a parameter set iteration
void	JIPipeMissingDataGeneratorAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	JIPipeIteratingAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	JIPipeSimpleIteratingAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
protected void	JIPipeAlgorithm.runPassThrough(JIPipeProgressInfo progressInfo) Runs the pass through.
protected void	JIPipeIteratingAlgorithm.runPassThrough(JIPipeProgressInfo progressInfo, JIPipeDataBatch dataBatch) A pass-through variant for iterating algorithms.
protected void	JIPipeSimpleIteratingAlgorithm.runPassThrough(JIPipeProgressInfo progressInfo, JIPipeDataBatch dataBatch) A pass-through variant for iterating algorithms.
protected void	JIPipeSingleIterationAlgorithm.runPassThrough(JIPipeProgressInfo progressInfo, JIPipeMergingDataBatch dataBatch) A pass-through variant for merging algorithms.
protected void	JIPipeMergingAlgorithm.runPassThrough(JIPipeProgressInfo progressInfo, JIPipeMergingDataBatch dataBatch) A pass-through variant for merging algorithms.
void	JIPipeGraphNode.setAllSlotsVirtual(boolean virtual, boolean apply, JIPipeProgressInfo progressInfo) Sets/unsets virtual mode for all output slots

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.annotation

Methods in org.hkijena.jipipe.extensions.annotation with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	AnnotationsExtension.register(JIPipe jiPipe, Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.annotation.algorithms

Methods in org.hkijena.jipipe.extensions.annotation.algorithms with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	SplitByAnnotationScript.run(JIPipeProgressInfo progressInfo)
void	ModifyAnnotationScript.run(JIPipeProgressInfo progressInfo)
void	SplitByAnnotation.run(JIPipeProgressInfo progressInfo)
void	FilterByAnnotation.run(JIPipeProgressInfo progressInfo)
void	MergeDataSlots.run(JIPipeProgressInfo progressInfo)
protected void	SplitByAnnotationScript.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	MergeAnnotations.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ModifyAnnotationScript.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RenameDataAnnotation.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	GenerateUniqueAnnotation.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	AnnotateWithData.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	AnnotateWithSourceSlot.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	SetSingleAnnotation.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	DataAnnotationToStringAnnotation.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ExtractDataAnnotation.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	SimplifyAnnotationsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	AnnotateByExpression.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RenameAnnotation.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RemoveAnnotationAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	AnnotateWithDataString.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	OverwriteAnnotations.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ExtractAndReplaceAnnotation.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RemoveDataAnnotations.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ConvertToAnnotationTable.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)
void	GenerateRandomUniqueAnnotation.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	RemoveArrayAnnotationsAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	RemoveNAAnnotationColumnsAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	AnnotateWithAnnotationTable.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
protected void	MergeAnnotations.runPassThrough(JIPipeProgressInfo progressInfo)
protected void	AnnotateWithAnnotationTable.runPassThrough(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.annotation.datasources

Methods in org.hkijena.jipipe.extensions.annotation.datasources with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	AnnotationTableFromFile.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.batchassistant

Methods in org.hkijena.jipipe.extensions.batchassistant with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	DataBatchStatusData.duplicate(JIPipeProgressInfo progressInfo)
static DataBatchStatusData	DataBatchStatusData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
void	BatchAssistantExtension.register(JIPipe jiPipe, Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.cellpose

Methods in org.hkijena.jipipe.extensions.cellpose with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static void	CellposeUtils.extractCellposeOutputs(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo, Path outputRoiOutline, Path outputLabels, Path outputFlows, Path outputProbabilities, Path outputStyles, List<JIPipeTextAnnotation> annotationList, CellposeSegmentationOutputSettings_Old outputParameters)
void	CellposeExtension.register(JIPipe jiPipe, Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.cellpose.algorithms

Methods in org.hkijena.jipipe.extensions.cellpose.algorithms with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ImportCellposeModelAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ImportCellposeSizeModelAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	CellposeTrainingAlgorithm.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	CellposeAlgorithm.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.cellpose.algorithms.deprecated

Methods in org.hkijena.jipipe.extensions.cellpose.algorithms.deprecated with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	CellposeTrainingAlgorithm_Old.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo) Deprecated.
protected void	CellposeAlgorithm_Old.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo) Deprecated.

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.cellpose.compat

Methods in org.hkijena.jipipe.extensions.cellpose.compat with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
List<Object>	CellposeSizeModelImageJExporter.exportData(JIPipeDataTable dataTable, ImageJExportParameters parameters, JIPipeProgressInfo progressInfo)
List<Object>	CellposeModelImageJExporter.exportData(JIPipeDataTable dataTable, ImageJExportParameters parameters, JIPipeProgressInfo progressInfo)
JIPipeDataTable	CellposeSizeModelImageJImporter.importData(List<Object> objects, ImageJImportParameters parameters, JIPipeProgressInfo progressInfo)
JIPipeDataTable	CellposeModelImageJImporter.importData(List<Object> objects, ImageJImportParameters parameters, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.cellpose.datatypes

Methods in org.hkijena.jipipe.extensions.cellpose.datatypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	CellposeModelData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	CellposeSizeModelData.duplicate(JIPipeProgressInfo progressInfo)
void	CellposeModelData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	CellposeSizeModelData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static CellposeModelData	CellposeModelData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static CellposeSizeModelData	CellposeSizeModelData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.clij2

Methods in org.hkijena.jipipe.extensions.clij2 with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	CLIJExtension.register(JIPipe jiPipe, Context context, JIPipeProgressInfo progressInfo)
void	CLIJCommandNode.run(JIPipeProgressInfo progressInfo)
protected void	CLIJCommandNode.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Constructors in org.hkijena.jipipe.extensions.clij2 with parameters of type JIPipeProgressInfo

Constructor and Description
CLIJCommandNodeInfo(Context context, PluginInfo<net.haesleinhuepf.clij.macro.CLIJMacroPlugin> pluginInfo, JIPipeProgressInfo moduleProgress)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.clij2.algorithms

Methods in org.hkijena.jipipe.extensions.clij2.algorithms with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	Clij2ExecuteKernelIterating.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	Clij2ExecuteKernelSimpleIterating.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	Clij2PushAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	Clij2PullAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
void	Clij2ExecuteKernelIterating.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	Clij2ExecuteKernelSimpleIterating.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.clij2.compat

Methods in org.hkijena.jipipe.extensions.clij2.compat with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
List<Object>	CLIIJ2DataToImageWindowImageJExporter.exportData(JIPipeDataTable dataTable, ImageJExportParameters parameters, JIPipeProgressInfo progressInfo)
JIPipeDataTable	CLIJ2DataFromImageWindowImageJImporter.importData(List<Object> objects, ImageJImportParameters parameters, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.clij2.datatypes

Methods in org.hkijena.jipipe.extensions.clij2.datatypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	CLIJImageData.duplicate(JIPipeProgressInfo progressInfo)
void	CLIJImageData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static CLIJImageData	CLIJImageData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
void	CLIJImageViewerCustomDataLoader.load(JIPipeVirtualData virtualData, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.core

Methods in org.hkijena.jipipe.extensions.core with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	CoreExtension.register(JIPipe jiPipe, Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.core.data

Methods in org.hkijena.jipipe.extensions.core.data with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	OpenContainingFolderDataImportOperation.show(JIPipeDataSlot slot, JIPipeDataTableMetadataRow row, String dataAnnotationName, Path rowStorageFolder, String compartmentName, String algorithmName, String displayName, JIPipeWorkbench workbench, JIPipeProgressInfo progressInfo)
JIPipeData	CopyContainingFolderDataImportOperation.show(JIPipeDataSlot slot, JIPipeDataTableMetadataRow row, String dataAnnotationName, Path rowStorageFolder, String compartmentName, String algorithmName, String displayName, JIPipeWorkbench workbench, JIPipeProgressInfo progressInfo)
JIPipeData	OpenInNativeApplicationDataImportOperation.show(JIPipeDataSlot slot, JIPipeDataTableMetadataRow row, String dataAnnotationName, Path rowStorageFolder, String compartmentName, String algorithmName, String displayName, JIPipeWorkbench workbench, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.core.nodes

Methods in org.hkijena.jipipe.extensions.core.nodes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	JIPipeCommentNode.run(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.expressions

Methods in org.hkijena.jipipe.extensions.expressions with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	ExpressionExtension.register(JIPipe jiPipe, Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.filesystem

Methods in org.hkijena.jipipe.extensions.filesystem with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	FilesystemExtension.register(JIPipe jiPipe, Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.filesystem.algorithms

Methods in org.hkijena.jipipe.extensions.filesystem.algorithms with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	ExportDataByParameter.run(JIPipeProgressInfo progressInfo)
protected void	SimpleFolderAnnotationGenerator.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	AnnotationToPath.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ImportDataRowFolder.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	CreateDirectory.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	AnnotateWithPathProperties.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	FilterPaths.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	CopyPath.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ConcatenatePaths.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	SimplePathAnnotationGenerator.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ExportData.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	SimpleFileAnnotationGenerator.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RelativizeByParameter.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ImportDataTableDirectory.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ListFiles.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ExtractParent.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ConcatenateByParameter.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RenameByString.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ExtractFileName.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ListSubfolders.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RelativizePaths.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ConvertDataToOutputPath.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ModifyPath.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ImportDataTableArchive.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	AnnotationTableToPaths.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ExportDataTableByParameter.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ExportDataTable.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.filesystem.compat

Methods in org.hkijena.jipipe.extensions.filesystem.compat with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
List<Object>	PathDataToTableImageJExporter.exportData(JIPipeDataTable dataTable, ImageJExportParameters parameters, JIPipeProgressInfo progressInfo)
JIPipeDataTable	PathDataFromTableImageJImporter.importData(List<Object> objects, ImageJImportParameters parameters, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.filesystem.datasources

Methods in org.hkijena.jipipe.extensions.filesystem.datasources with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	OutputFolderDataSource.run(JIPipeProgressInfo progressInfo)
void	PathListDataSource.run(JIPipeProgressInfo progressInfo)
void	PathDataSource.run(JIPipeProgressInfo progressInfo)
void	FolderDataSource.run(JIPipeProgressInfo progressInfo)
void	FileListDataSource.run(JIPipeProgressInfo progressInfo)
void	FileDataSource.run(JIPipeProgressInfo progressInfo)
void	FolderListDataSource.run(JIPipeProgressInfo progressInfo)
protected void	PathFromUserDataSource.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	DownloadFilesDataSource.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
void	TemporaryFolderDataSource.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	TemporaryFileDataSource.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.filesystem.dataypes

Methods in org.hkijena.jipipe.extensions.filesystem.dataypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	PathData.duplicate(JIPipeProgressInfo progressInfo)
void	PathData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static FolderData	FolderData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static FileData	FileData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static PathData	PathData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.forms

Methods in org.hkijena.jipipe.extensions.forms with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	FormsExtension.register(JIPipe jiPipe, Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.forms.algorithms

Methods in org.hkijena.jipipe.extensions.forms.algorithms with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
List<JIPipeMergingDataBatch>	MergingFormProcessorAlgorithm.generateDataBatchesDryRun(List<JIPipeInputDataSlot> slots, JIPipeProgressInfo progressInfo)
List<JIPipeMergingDataBatch>	SimpleIteratingFormProcessorAlgorithm.generateDataBatchesDryRun(List<JIPipeInputDataSlot> slots, JIPipeProgressInfo progressInfo)
List<JIPipeMergingDataBatch>	IteratingFormProcessorAlgorithm.generateDataBatchesDryRun(List<JIPipeInputDataSlot> slots, JIPipeProgressInfo progressInfo)
abstract void	FormGeneratorAlgorithm.run(JIPipeDataSlot combined, JIPipeProgressInfo progressInfo) This method should add new FormData elements into the combined slot.
void	SimpleFormGeneratorAlgorithm.run(JIPipeDataSlot combined, JIPipeProgressInfo progressInfo)
void	FormGeneratorAlgorithm.run(JIPipeProgressInfo progressInfo)
void	MergingFormProcessorAlgorithm.run(JIPipeProgressInfo progressInfo)
void	SimpleIteratingFormProcessorAlgorithm.run(JIPipeProgressInfo progressInfo)
void	IteratingFormProcessorAlgorithm.run(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.forms.datatypes

Methods in org.hkijena.jipipe.extensions.forms.datatypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	IntegerFormData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	DoubleFormData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	EnumFormData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	BooleanFormData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	GroupHeaderFormData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	StringFormData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	PathFormData.duplicate(JIPipeProgressInfo progressInfo)
void	FormData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static <T extends FormData> T	FormData.importData(JIPipeReadDataStorage storage, Class<T> klass, JIPipeProgressInfo progressInfo) Helper method that simplifies the importData() method definition
static IntegerFormData	IntegerFormData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static DoubleFormData	DoubleFormData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static EnumFormData	EnumFormData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static BooleanFormData	BooleanFormData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static GroupHeaderFormData	GroupHeaderFormData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static StringFormData	StringFormData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static PathFormData	PathFormData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.ijmultitemplatematching

Methods in org.hkijena.jipipe.extensions.ijmultitemplatematching with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	MultiTemplateMatchingExtension.register(JIPipe jiPipe, Context context, JIPipeProgressInfo progressInfo)
protected void	MultiTemplateMatchingAlgorithm.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.ijtrackmate

Methods in org.hkijena.jipipe.extensions.ijtrackmate with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	TrackMateExtension.register(JIPipe jiPipe, Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.ijtrackmate.datatypes

Methods in org.hkijena.jipipe.extensions.ijtrackmate.datatypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	TrackCollectionData.computeEdgeFeatures(JIPipeProgressInfo progressInfo)
void	TrackCollectionData.computeTrackFeatures(JIPipeProgressInfo progressInfo)
JIPipeData	ModelData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	SpotTrackerData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	SpotDetectorData.duplicate(JIPipeProgressInfo progressInfo)
void	ModelData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	SpotTrackerData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	SpotDetectorData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static ModelData	ModelData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static SpotTrackerData	SpotTrackerData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static SpotsCollectionData	SpotsCollectionData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static SpotDetectorData	SpotDetectorData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static TrackCollectionData	TrackCollectionData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.ijtrackmate.display.algorithms

Methods in org.hkijena.jipipe.extensions.ijtrackmate.display.algorithms with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	CachedTrackmateAlgorithmViewerWindow.loadData(JIPipeVirtualData virtualData, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.ijtrackmate.display.spots

Methods in org.hkijena.jipipe.extensions.ijtrackmate.display.spots with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	CachedSpotCollectionDataViewerWindow.loadData(JIPipeVirtualData virtualData, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.ijtrackmate.display.tracks

Methods in org.hkijena.jipipe.extensions.ijtrackmate.display.tracks with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	CachedTracksCollectionDataViewerWindow.loadData(JIPipeVirtualData virtualData, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.ijtrackmate.display.trackscheme

Methods in org.hkijena.jipipe.extensions.ijtrackmate.display.trackscheme with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	TrackSchemeCachedDataViewerWindow.loadData(JIPipeVirtualData virtualData, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.ijtrackmate.nodes.converters

Methods in org.hkijena.jipipe.extensions.ijtrackmate.nodes.converters with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ConvertSpotsToRoiNode.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ConvertTracksToRoiNode.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.ijtrackmate.nodes.detectors

Methods in org.hkijena.jipipe.extensions.ijtrackmate.nodes.detectors with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	CreateSpotDetectorNode.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	CreateSpotTrackerNode.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.ijtrackmate.nodes.spots

Methods in org.hkijena.jipipe.extensions.ijtrackmate.nodes.spots with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	MeasureSpotsNode.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	SpotFilterNode.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	SpotsToRGBNode.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	SplitSpotsNode.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	SpotDetectorNode.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	MergeSpotsNode.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.ijtrackmate.nodes.tracks

Methods in org.hkijena.jipipe.extensions.ijtrackmate.nodes.tracks with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	TracksToRGBNode.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	MeasureBranchesNode.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	TrackFilterNode.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	MeasureEdgesNode.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	TrackSchemeRendererNode.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	MeasureTracksNode.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	FollowSpotsPerTrackNode.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	SplitTracksNode.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	TrackingNode.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	MergeTracksNode.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.ijtrackmate.utils

Methods in org.hkijena.jipipe.extensions.ijtrackmate.utils that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	JIPipeLogger.getProgressInfo()

Methods in org.hkijena.jipipe.extensions.ijtrackmate.utils with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static void	TrackMateUtils.registerEdgeFeatures(JIPipeProgressInfo progressInfo)
static void	TrackMateUtils.registerSpotDetectors(TrackMateExtension trackMateExtension, JIPipeProgressInfo progressInfo, PluginService service)
static void	TrackMateUtils.registerSpotFeatures(JIPipeProgressInfo progressInfo)
static void	TrackMateUtils.registerSpotTrackers(TrackMateExtension trackMateExtension, JIPipeProgressInfo progressInfo, PluginService service)
static void	TrackMateUtils.registerTrackFeatures(JIPipeProgressInfo progressInfo)

Constructors in org.hkijena.jipipe.extensions.ijtrackmate.utils with parameters of type JIPipeProgressInfo

Constructor and Description
JIPipeLogger(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.ijweka

Methods in org.hkijena.jipipe.extensions.ijweka with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	WekaExtension.register(JIPipe jiPipe, Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.ijweka.datatypes

Methods in org.hkijena.jipipe.extensions.ijweka.datatypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	WekaModelData.duplicate(JIPipeProgressInfo progressInfo)
void	WekaModelData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static WekaModelData	WekaModelData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.ijweka.nodes

Methods in org.hkijena.jipipe.extensions.ijweka.nodes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	WekaClassification2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	WekaTrainingROI3DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	WekaTrainingROI2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	WekaTrainingLabels2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	WekaClassification3DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ImportWekaModelFromFileAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	WekaTrainingMask2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagej2

Methods in org.hkijena.jipipe.extensions.imagej2 with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	ImageJ2Extension.register(JIPipe jiPipe, Context context, JIPipeProgressInfo progressInfo)
protected void	ImageJ2OpNode.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Constructors in org.hkijena.jipipe.extensions.imagej2 with parameters of type JIPipeProgressInfo

Constructor and Description
ImageJ2OpNodeInfo(Context context, OpInfo opInfo, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagej2.algorithms

Methods in org.hkijena.jipipe.extensions.imagej2.algorithms with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	CreateIJ2ShapeAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	CreateIJ2OutOfBoundsFactoryAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagej2.compat

Methods in org.hkijena.jipipe.extensions.imagej2.compat with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
List<Object>	IJ2DataToImageWindowImageJExporter.exportData(JIPipeDataTable dataTable, ImageJExportParameters parameters, JIPipeProgressInfo progressInfo)
JIPipeDataTable	IJ2DataFromImageWindowImageJImporter.importData(List<Object> objects, ImageJImportParameters parameters, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagej2.datatypes

Methods in org.hkijena.jipipe.extensions.imagej2.datatypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	ImageJ2DatasetData.duplicate(JIPipeProgressInfo progressInfo)
void	ImageJ2DatasetData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static ImageJ2DatasetData	ImageJ2DatasetData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds

Methods in org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static PeriodicImageJ2OutOfBoundsFactoryData	PeriodicImageJ2OutOfBoundsFactoryData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static MirrorImageJ2OutOfBoundsFactoryData	MirrorImageJ2OutOfBoundsFactoryData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static EmptyImageJ2OutOfBoundsFactory	EmptyImageJ2OutOfBoundsFactory.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static BorderImageJ2OutOfBoundsFactoryData	BorderImageJ2OutOfBoundsFactoryData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds.constant

Methods in org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds.constant with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static ByteConstantValueImageJ2OutOfBoundsFactoryData	ByteConstantValueImageJ2OutOfBoundsFactoryData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static IntegerConstantValueImageJ2OutOfBoundsFactoryData	IntegerConstantValueImageJ2OutOfBoundsFactoryData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static FloatConstantValueImageJ2OutOfBoundsFactoryData	FloatConstantValueImageJ2OutOfBoundsFactoryData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static LongConstantValueImageJ2OutOfBoundsFactoryData	LongConstantValueImageJ2OutOfBoundsFactoryData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static DoubleConstantValueImageJ2OutOfBoundsFactoryData	DoubleConstantValueImageJ2OutOfBoundsFactoryData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ShortConstantValueImageJ2OutOfBoundsFactoryData	ShortConstantValueImageJ2OutOfBoundsFactoryData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagej2.datatypes.shapes

Methods in org.hkijena.jipipe.extensions.imagej2.datatypes.shapes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static EmptyImageJ2ShapeData	EmptyImageJ2ShapeData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static DiamondImageJ2ShapeData	DiamondImageJ2ShapeData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static DiamondTipsImageJ2ShapeData	DiamondTipsImageJ2ShapeData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static HyperSphereImageJ2ShapeData	HyperSphereImageJ2ShapeData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static CenteredRectangleImageJ2ShapeData	CenteredRectangleImageJ2ShapeData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static RectangleImageJ2ShapeData	RectangleImageJ2ShapeData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static PairOfPointsImageJ2ShapeData	PairOfPointsImageJ2ShapeData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static HorizontalLineImageJ2ShapeData	HorizontalLineImageJ2ShapeData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static PeriodicLineImageJ2ShapeData	PeriodicLineImageJ2ShapeData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagej2.io

Methods in org.hkijena.jipipe.extensions.imagej2.io with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
boolean	ImageJ2ModuleIO.transferFromJIPipe(ImageJ2OpNode node, JIPipeDataBatch dataBatch, ModuleItem moduleItem, Module module, JIPipeProgressInfo progressInfo) Transfers data from JIPipe into the module
boolean	ServiceImageJ2ModuleIO.transferFromJIPipe(ImageJ2OpNode node, JIPipeDataBatch dataBatch, ModuleItem moduleItem, Module module, JIPipeProgressInfo progressInfo)
boolean	ImageJ2ModuleIO.transferToJIPipe(ImageJ2OpNode node, JIPipeDataBatch dataBatch, ParametersData moduleOutputParameters, ModuleItem moduleItem, Module module, JIPipeProgressInfo progressInfo) Transfers data from JIPipe from the module
boolean	ServiceImageJ2ModuleIO.transferToJIPipe(ImageJ2OpNode node, JIPipeDataBatch dataBatch, ParametersData moduleOutputParameters, ModuleItem moduleItem, Module module, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagej2.io.data.input

Methods in org.hkijena.jipipe.extensions.imagej2.io.data.input with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
boolean	DataSlotModuleInput.transferFromJIPipe(ImageJ2OpNode node, JIPipeDataBatch dataBatch, ModuleItem moduleItem, Module module, JIPipeProgressInfo progressInfo)
boolean	DataSlotModuleInput.transferToJIPipe(ImageJ2OpNode node, JIPipeDataBatch dataBatch, ParametersData moduleOutputParameters, ModuleItem moduleItem, Module module, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagej2.io.data.output

Methods in org.hkijena.jipipe.extensions.imagej2.io.data.output with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
boolean	DataSlotModuleOutput.transferFromJIPipe(ImageJ2OpNode node, JIPipeDataBatch dataBatch, ModuleItem moduleItem, Module module, JIPipeProgressInfo progressInfo)
boolean	DataSlotModuleOutput.transferToJIPipe(ImageJ2OpNode node, JIPipeDataBatch dataBatch, ParametersData moduleOutputParameters, ModuleItem moduleItem, Module module, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagej2.io.parameters.input

Methods in org.hkijena.jipipe.extensions.imagej2.io.parameters.input with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
boolean	ParameterImageJ2ModuleInput.transferFromJIPipe(ImageJ2OpNode node, JIPipeDataBatch dataBatch, ModuleItem moduleItem, Module module, JIPipeProgressInfo progressInfo)
boolean	ParameterImageJ2ModuleInput.transferToJIPipe(ImageJ2OpNode node, JIPipeDataBatch dataBatch, ParametersData moduleOutputParameters, ModuleItem moduleItem, Module module, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagej2.io.parameters.output

Methods in org.hkijena.jipipe.extensions.imagej2.io.parameters.output with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
boolean	ParameterImageJ2ModuleOutput.transferFromJIPipe(ImageJ2OpNode node, JIPipeDataBatch dataBatch, ModuleItem moduleItem, Module module, JIPipeProgressInfo progressInfo)
boolean	ParameterImageJ2ModuleOutput.transferToJIPipe(ImageJ2OpNode node, JIPipeDataBatch dataBatch, ParametersData moduleOutputParameters, ModuleItem moduleItem, Module module, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagej2.util

Methods in org.hkijena.jipipe.extensions.imagej2.util with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	ImageJDataSetDataImageViewerCustomLoader.load(JIPipeVirtualData virtualData, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms

Methods in org.hkijena.jipipe.extensions.imagejalgorithms with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	ImageJAlgorithmsExtension.register(JIPipe jiPipe, Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1 with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	MacroWrapperAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	AnnotateByImageStatisticsExpressionAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ImageStatisticsExpressionAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ImageStatisticsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	AnalyzeSkeleton2D3DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	FindParticles2D.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	RollingBallBackgroundEstimator2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ConnectedComponentsLabeling2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ConvexifyAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	DistanceTransformWatershed2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	UltimateErodedPoints2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	VolumeOpening3DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	BitwiseLogicalOperationAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	KeepLargestRegionAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	VolumeOpening2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ConnectedComponentsLabeling3DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RemoveLargestRegionAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	BinarizeAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	Voronoi2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ConditionalInverterAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	BoxFilter2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	MedianBlurFilter2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	MedianBlurRGB2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	MedianBlurGreyscale8U2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	BoxFilter3DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	GaussianBlur2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	GaussianBlur3DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	MedianBlurFilter3DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.calibration

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.calibration with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	SetPhysicalDimensionsByExpressionsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	SetPhysicalDimensionsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	DrawScaleBarAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	SetPhysicalDimensionsByAnnotationsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.colocalization

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.colocalization with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	Coloc2Node.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Constructors in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.colocalization with parameters of type JIPipeProgressInfo

Constructor and Description
CustomColoc2(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ColorToGreyscaleExpression2D.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	SetToValueAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RenderImageToRGBAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	SplitChannelsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo) Deprecated.
protected void	ArrangeChannelsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	InvertColorsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	OverlayImagesAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo) Deprecated.
protected void	MergeChannelsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	SplitRGBChannelsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	BlendImagesAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	CombineChannelsToRGBAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	NewSplitChannelsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	SetToColorAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	CLAHEContrastEnhancer.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	IlluminationCorrection2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	HistogramContrastEnhancerAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convert

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convert with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ConvertImageToLABAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ConvertImageToHSBAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	MatrixToImageAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ConvertImageTo16BitAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ImageToTableAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ImageToMatrixAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ConvertImageAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ConvertImageTo32BitAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	TableToImageAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ConvertImageTo8BitAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ConvolveByParameter2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ConvolveByImage2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	OMEImageFromImagePlus.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ImageStackFromFolder.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	StackTo2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	HyperstackSlicerAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	StackSplitterAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	StackCombinerAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	SplitByDimensionAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ZProjectorAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	MontageToStackAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	StackInverterAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	NewZProjectorAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ExpressionSlicerAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	StackToMontageAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ResliceAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ReorderDimensionsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	Merge2DToHyperstackAlgorithm.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	StackToDimensionMergerAlgorithm.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	InputImagesToMontage.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	CreateStackAlgorithm.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	CannyEdgeDetectorAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	LaplacianEdgeDetectorAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	SobelEdgeDetectorAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	DifferenceOfGaussian2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	FrangiVesselnessFeatures.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	LaplacianOfGaussian2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	MeijeringVesselness2DFeatures.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	LocalMaxima2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	DirectionalFilter2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	FFT2DForwardTransform.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	FFT2DSwapQuadrants.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	FFT2DInverseTransform.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.forms

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.forms with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	MaskDrawerFormData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	ROIDrawerFormData.duplicate(JIPipeProgressInfo progressInfo)
protected void	DrawROIAlgorithm.runGenerator(JIPipeMergingDataBatch dataBatch, JIPipeDataSlot inputSlot, JIPipeDataSlot outputSlot, JIPipeProgressInfo progressInfo)
protected void	DrawMaskAlgorithm.runGenerator(JIPipeMergingDataBatch dataBatch, JIPipeDataSlot inputSlot, JIPipeDataSlot outputSlot, JIPipeProgressInfo progressInfo)
void	DrawROIAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	DrawMaskAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	GenerateMissingImageFromMathExpression2D.runGenerator(JIPipeMergingDataBatch dataBatch, JIPipeDataSlot inputSlot, JIPipeDataSlot outputSlot, JIPipeProgressInfo progressInfo)
protected void	GenerateMissingTablesAlgorithm.runGenerator(JIPipeMergingDataBatch dataBatch, JIPipeDataSlot inputSlot, JIPipeDataSlot outputSlot, JIPipeProgressInfo progressInfo)
protected void	GenerateMissingZeroImage.runGenerator(JIPipeMergingDataBatch dataBatch, JIPipeDataSlot inputSlot, JIPipeDataSlot outputSlot, JIPipeProgressInfo progressInfo)
protected void	ImageFromMatrix2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	GenerateZeroImage.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	GenerateStructureElement3DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	GenerateStructureElement2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	GenerateLUTImageFromColorMap.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ROIFromGUI.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ResultsTableToGUI.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ExportImageAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RunImageJImporterAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ExportROIAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ROIToGUI.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ExportImage2Algorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ResultsTableFromGUI.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ImagePlusToGUI.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ImagePlusFromGUI.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ExportTableAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RunImageJExporterAlgorithm.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ExportTableAsXLSXAlgorithm.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)
void	ExportImageAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	ExportROIAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	ExportImage2Algorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	ExportTableAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.labels

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.labels with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	OverlapMeasureLabelsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	DilateLabelsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	GetLabelBoundariesAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ReplaceLabelsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	AnnotateWithOverlapMeasureLabelsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	MergeLabelsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	LabelsToROIAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	KeepLargestLabelAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ExtractLabelStatisticsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RemapLabelsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	LabelsToRGBAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	MergeSmallLabelsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	CropLabelsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ExpandLabelsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.labels.filter

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.labels.filter with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	FilterLabelsByMaskAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RemoveBorderLabelsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	FilterLabelsByIdAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	FilterLabelsByExpression2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	FilterLabelsByStatisticsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	FilterLabelsByExpression3DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RemoveLargestLabelAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	FilterLabelsByOverlapAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	SetLUTFromColorMapAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ApplyLUTAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RemoveLUTAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	SetLUTFromColorsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	LUTInverterAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	SetLUTFromImageAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	Hessian2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	GenerateFromMathExpression2D.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RemoveNaNFilter2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ApplyTransform2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ApplyVectorMathExpression2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ImageCalculator2DExpression.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ApplyMath2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ImageCalculator2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ApplyColorMathExpression2DExpression.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	DivideByMaximumAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RoundFloatImageAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	GenerateVectorFromMathExpression.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ApplyMathExpression2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.distancemap

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.distancemap with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ApplyDistanceTransform2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	LabelChamferDistanceMap3DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ChamferDistanceMap2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ChamferDistanceMap3DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	GeodesicDistanceMap2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.local

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.local with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ExtendedMinima2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ExtendedMinima3DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RegionalMinima2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	LocalMinimumFilter2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	LocalImageCalculator2DExpression.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ImposeMaxima3DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	LocalMinimumFilter3DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	LocalVarianceFilter3DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	LocalVarianceFilter2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ExtendedMaxima3DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RegionalMaxima3DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ImposeMaxima2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RegionalMinima3DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	LocalMaximumFilter2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	LocalMaximumFilter3DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RegionalMaxima2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ExtendedMaxima2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	DataToPreviewAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RenderJIPipeProjectAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	Morphology3DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	MorphologyBinary2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	MorphologicalReconstruction3DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	MorphologicalReconstruction2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	MorphologySkeletonize2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	MorphologySkeletonize3DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	MorphologyOutline2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	GrayscaleAttributeFiltering2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	FindHoles2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	MorphologyInternalGradient2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	Morphology2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	MorphologyFillHoles2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	GrayscaleAttributeFiltering3DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	AddSaltAndPepperNoise2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RemoveOutliersFilter2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	DespeckleFilter2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	AddNoise2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.opticalflow

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.opticalflow with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	MSEGaussianFlowAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	PMCCBlockFlowAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	MSEBlockFlowAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.overlay

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.overlay with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ExtractOverlayAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RemoveOverlayAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RenderOverlayAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	SetOverlayAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	CropToRoiAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	SplitRoiConnectedComponentsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	SetRoiImageAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	UnsetRoiImageAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RoiCalculatorAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	GetRoiImageAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ExtractImageInRoiAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.annotations

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.annotations with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	RoiPropertiesToAnnotationsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.assemble

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.assemble with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ExtractFromROIAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	AssembleExtractedROIAlgorithm.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.convert

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.convert with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	RoiToRGBAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	UnreferencedRoiToRGBAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RoiToMaskAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ROIToLabelsExpressionAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ROIToLabelsByNameAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	UnreferencedRoiToMaskAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RoiToRGBAlgorithm.runPassThrough(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.draw

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.draw with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	DrawRectangleRoiAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	DrawOvalRoiAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	DrawScaleBarRoiAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	DrawTextRoiAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.filter

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.filter with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	FilterRoiByStatisticsAlgorithm.run(JIPipeProgressInfo progressInfo)
void	FilterRoiByStatisticsScriptAlgorithm.run(JIPipeProgressInfo progressInfo)
protected void	FilterRoiByStatisticsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RemoveBorderRoisAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	FilterRoiByNameAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	SliceROIListAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	FilterRoiByStatisticsScriptAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	FilterROIListsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	FilterROIByOverlapAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.generate

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.generate with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	DefineRectangularRoiAlgorithm.run(JIPipeProgressInfo progressInfo) Deprecated.
protected void	GenerateMissingRoiListsAlgorithm.runGenerator(JIPipeMergingDataBatch dataBatch, JIPipeDataSlot inputSlot, JIPipeDataSlot outputSlot, JIPipeProgressInfo progressInfo)
protected void	MaskToRoiAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	AppendRectangularRoiAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo) Deprecated.
protected void	ReferencedAppendRectangularRoiAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo) Deprecated.
protected void	ReferencedDefineRectangularRoiAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo) Deprecated.
protected void	TableToRectangularROIAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	TableToCircularROIAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.measure

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.measure with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	RoiStatisticsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	CountROIAlgorithm.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)
void	CountROIAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
protected void	CountROIAlgorithm.runPassThrough(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.merge

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.merge with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	FilterAndMergeRoiByStatisticsScriptAlgorithm.run(JIPipeProgressInfo progressInfo)
protected void	FilterAndMergeRoiByStatisticsScriptAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	MergeRoiListsAlgorithm.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	AddRoiListsAlgorithm.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.modify

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.modify with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	ColorRoiByStatisticsAlgorithm.run(JIPipeProgressInfo progressInfo)
void	ChangeRoiPropertiesFromExpressionsAlgorithm.run(JIPipeProgressInfo progressInfo)
protected void	ColorRoiByStatisticsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	OutlineRoiAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ChangeRoiPropertiesFromAnnotationsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ChangeRoiPropertiesAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RoiToCentroidAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RoiFloodFillAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ReorderRoiDimensionsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ColorRoiByNameAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ScaleRoiAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ChangeRoiPropertiesFromExpressionsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.properties

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.properties with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	SetRoiMetadataByStatisticsAlgorithm.run(JIPipeProgressInfo progressInfo)
protected void	SetRoiMetadataByStatisticsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	SetROIMetadataFromTableAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RemoveROIMetadataAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ExtractROIMetadataAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.sort

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.sort with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	SortAndExtractRoiByStatisticsAlgorithm.run(JIPipeProgressInfo progressInfo) Deprecated.
void	SortAndExtractRoiByStatisticsAlgorithm2.run(JIPipeProgressInfo progressInfo)
protected void	SortAndExtractRoiByStatisticsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo) Deprecated.
protected void	SortRoiListByExpressionsAndMeasurementsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	SortAndExtractRoiByStatisticsAlgorithm2.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.split

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.split with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	SplitRoiAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ExplodeRoiAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.segment

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.segment with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	SeededWatershedSegmentationAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RidgeDetector2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ClassicWatershedSegmentationAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.sharpen

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.sharpen with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	LaplacianSharpen2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	AverageKeyValueThresholdStatisticsGenerator.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	KeyValueThresholdStatisticsGenerator.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	KeyValueThresholdPartitionAveragesGenerator.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	KeyValueAveragesGenerator.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	HistogramGenerator.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	FastKeyValueThresholdStatisticsGenerator.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	KeyValueHistogramGenerator.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	KeyValueThresholdPartitionGenerator.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	CustomAutoThreshold2D8UAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ManualThreshold8U2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	CustomAutoThreshold2D16UAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	FastCircularHoughSegmentation2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	LinesHoughDetection2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	CircularHoughSegmentation2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	CustomAutoThreshold2D32FAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	AutoThreshold2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	HessianSegmentation2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	PercentileThreshold8U2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ManualThreshold32F2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	InternalGradientSegmentation2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ManualThreshold16U2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	BrightSpotsSegmentation2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ThresholdByAnnotation2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.color

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.color with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ManualHSBThreshold2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ManualRGBThreshold2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ColorThresholdExpression2D.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ManualLABThreshold2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.iterative

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.iterative with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	IterativeThresholdByROIStatistics2DAlgorithm.run(JIPipeProgressInfo progressInfo)
protected void	IterativeThresholdByROIStatistics2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.local

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.local with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	LocalAutoThreshold2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	NiblackLocalAutoThreshold2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ContrastLocalAutoThreshold2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	BernsenLocalAutoThreshold2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	PhansalkarLocalAutoThreshold2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	SauvolaLocalAutoThreshold2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static ij.ImagePlus	AddBorder2DAlgorithm.addBorder(ij.ImagePlus img, int left, int top, int right, int bottom, BorderMode borderMode, double colorGreyscale, Color colorRGB, JIPipeProgressInfo progressInfo)
static ij.ImagePlus	TransformCrop2DAlgorithm.crop(JIPipeProgressInfo progressInfo, ij.ImagePlus img, Rectangle cropped)
ij.process.ImageProcessor	MergeImagesAlgorithm.getMask(JIPipeDataBatch dataBatch, ImageSliceIndex sliceIndex, JIPipeProgressInfo progressInfo)
protected void	TransformRotate2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	TransformFlip2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	TransformCrop2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	TransformRotateFree2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	TransformEqualizeDimensionsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	TransformSetHyperstackDimensionsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	TransformScale2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	TileImage2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	AddBorder2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	Warp2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	TransformScale3DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	MergeImagesAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	TransformExpandCanvas2DAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	TransformEqualCanvasSize2DAlgorithm.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	UnTileImage2DAlgorithm.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejalgorithms.utils

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.utils with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
ij.process.ImageProcessor	SimpleImageAndRoiIteratingAlgorithm.getMask(JIPipeDataBatch dataBatch, ImageSliceIndex sliceIndex, JIPipeProgressInfo progressInfo)
static ij.ImagePlus	ImageJAlgorithmUtils.getMaskFromMaskOrROI(ImageROITargetArea targetArea, JIPipeDataBatch dataBatch, String imageSlotName, JIPipeProgressInfo progressInfo)
static ij.process.ImageProcessor	ImageJAlgorithmUtils.getMaskProcessorFromMaskOrROI(ImageROITargetArea targetArea, JIPipeDataBatch dataBatch, ImageSliceIndex sliceIndex, JIPipeProgressInfo progressInfo)
static ResultsTableData	ImageJAlgorithmUtils.measureLabels(ij.process.ImageProcessor label, ij.process.ImageProcessor image, ImageStatisticsSetParameter measurements, ImageSliceIndex index, ij.measure.Calibration calibration, JIPipeProgressInfo progressInfo) Measures properties of a label image

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejdatatypes

Methods in org.hkijena.jipipe.extensions.imagejdatatypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	ImageJDataTypesExtension.register(JIPipe jiPipe, Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms

Methods in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	ImageTypeConverter.run(JIPipeProgressInfo progressInfo)
protected void	SetBioFormatsExporterSettings.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ImagePropertiesToAnnotationAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	DisplayRangeCalibrationAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	BioFormatsExporter.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
void	BioFormatsExporter.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.color

Methods in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.color with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ColorSpaceConverterAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.datasources

Methods in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.datasources with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static ij.ImagePlus	ImagePlusFromFile.readImageFrom(Path fileName, JIPipeProgressInfo progressInfo) Loads an image from a file path
protected void	BioFormatsImporter.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ROIDataFromOMEImage.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ROIDataFromFile.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ImportLUTAsRGBFromFile.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ResultsTableFromFile.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ImagePlusFromFile.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
void	ImagePlusFromFileImageSource.saveTo(Path storageFilePath, String name, boolean forceName, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejdatatypes.colorspace

Methods in org.hkijena.jipipe.extensions.imagejdatatypes.colorspace with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	ColorSpace.convert(ij.ImagePlus img, ColorSpace imgSpace, JIPipeProgressInfo progressInfo) Converts the image into the current color space
void	IgnoreColorSpace.convert(ij.ImagePlus img, ColorSpace imgSpace, JIPipeProgressInfo progressInfo)
void	RGBColorSpace.convert(ij.ImagePlus img, ColorSpace imgSpace, JIPipeProgressInfo progressInfo)
void	HSBColorSpace.convert(ij.ImagePlus img, ColorSpace imgSpace, JIPipeProgressInfo progressInfo)
void	LABColorSpace.convert(ij.ImagePlus img, ColorSpace imgSpace, JIPipeProgressInfo progressInfo)
void	GreyscaleColorSpace.convert(ij.ImagePlus img, ColorSpace imgSpace, JIPipeProgressInfo progressInfo)
void	ColorSpace.convertToRGB(ij.ImagePlus img, JIPipeProgressInfo progressInfo) Converts the color image into RGB (in-place)
void	IgnoreColorSpace.convertToRGB(ij.ImagePlus img, JIPipeProgressInfo progressInfo)
void	RGBColorSpace.convertToRGB(ij.ImagePlus img, JIPipeProgressInfo progressInfo)
void	HSBColorSpace.convertToRGB(ij.ImagePlus img, JIPipeProgressInfo progressInfo)
void	LABColorSpace.convertToRGB(ij.ImagePlus img, JIPipeProgressInfo progressInfo)
void	GreyscaleColorSpace.convertToRGB(ij.ImagePlus img, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejdatatypes.compat

Methods in org.hkijena.jipipe.extensions.imagejdatatypes.compat with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
List<Object>	ImagePlusDataToImageWindowImageJExporter.exportData(JIPipeDataTable dataTable, ImageJExportParameters parameters, JIPipeProgressInfo progressInfo)
List<Object>	RoiManagerImageJExporter.exportData(JIPipeDataTable dataTable, ImageJExportParameters parameters, JIPipeProgressInfo progressInfo)
List<Object>	OMEImageToImageWindowImageJExporter.exportData(JIPipeDataTable dataTable, ImageJExportParameters parameters, JIPipeProgressInfo progressInfo)
JIPipeDataTable	OMEImageFromImageWindowImageJImporter.importData(List<Object> objects, ImageJImportParameters parameters, JIPipeProgressInfo progressInfo)
JIPipeDataTable	ImagePlusDataFromImageWindowImageJImporter.importData(List<Object> objects, ImageJImportParameters parameters, JIPipeProgressInfo progressInfo)
JIPipeDataTable	RoiManagerImageJImporter.importData(List<Object> objects, ImageJImportParameters parameters, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes

Methods in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	LUTData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	OMEImageData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	ROIListData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	ImagePlusData.duplicate(JIPipeProgressInfo progressInfo)
void	LUTData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	OMEImageData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	ROIListData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	ImagePlusData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static LUTData	LUTData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static OMEImageData	OMEImageData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ROIListData	ROIListData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo) Loads Roi from a path that contains a zip/roi file
static ImagePlusData	ImagePlusData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ij.ImagePlus	ImagePlusData.importImagePlusFrom(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color

Methods in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static ImagePlusData	ImagePlusColorHSBData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlusColorData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlusColorRGBData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlusColorLABData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2

Methods in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2 with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static ImagePlusData	ImagePlus2DData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color

Methods in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static ImagePlusData	ImagePlus2DColorData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus2DColorLABData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus2DColorRGBData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus2DColorHSBData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale

Methods in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static ImagePlusData	ImagePlus2DGreyscale32FData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus2DGreyscale16UData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus2DGreyscale8UData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus2DGreyscaleData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus2DGreyscaleMaskData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3

Methods in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3 with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static ImagePlusData	ImagePlus3DData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color

Methods in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static ImagePlusData	ImagePlus3DColorHSBData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus3DColorData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus3DColorRGBData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus3DColorLABData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale

Methods in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static ImagePlusData	ImagePlus3DGreyscale16UData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus3DGreyscale32FData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus3DGreyscaleData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus3DGreyscale8UData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus3DGreyscaleMaskData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4

Methods in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4 with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static ImagePlusData	ImagePlus4DData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color

Methods in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static ImagePlusData	ImagePlus4DColorRGBData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus4DColorLABData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus4DColorData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus4DColorHSBData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale

Methods in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static ImagePlusData	ImagePlus4DGreyscaleData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus4DGreyscale32FData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus4DGreyscale8UData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus4DGreyscale16UData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus4DGreyscaleMaskData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5

Methods in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5 with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static ImagePlusData	ImagePlus5DData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color

Methods in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static ImagePlusData	ImagePlus5DColorLABData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus5DColorRGBData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus5DColorHSBData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus5DColorData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale

Methods in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static ImagePlusData	ImagePlus5DGreyscaleData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus5DGreyscale8UData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus5DGreyscale16UData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus5DGreyscale32FData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus5DGreyscaleMaskData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft

Methods in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	ImagePlusFFTData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static ImagePlusFFT3DData	ImagePlusFFT3DData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusFFTData	ImagePlusFFTData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusFFT2DData	ImagePlusFFT2DData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusFFT5DData	ImagePlusFFT5DData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusFFT4DData	ImagePlusFFT4DData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale

Methods in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static ImagePlusData	ImagePlusGreyscale32FData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlusGreyscaleMaskData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlusGreyscale8UData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlusGreyscaleData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlusGreyscale16UData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejdatatypes.display

Methods in org.hkijena.jipipe.extensions.imagejdatatypes.display with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
abstract void	CachedImagePlusDataViewerWindow.CustomDataLoader.load(JIPipeVirtualData virtualData, JIPipeProgressInfo progressInfo) The data loading operation.
protected void	CachedImagePlusDataViewerWindow.loadData(JIPipeVirtualData virtualData, JIPipeProgressInfo progressInfo)
protected void	CachedROIListDataViewerWindow.loadData(JIPipeVirtualData virtualData, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis

Methods in org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	ImagePlusResultImportRun.getProgressInfo()
JIPipeProgressInfo	OMEImageResultImportRun.getProgressInfo()

Methods in org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	ImagePlusResultImportRun.setProgressInfo(JIPipeProgressInfo progressInfo)
void	OMEImageResultImportRun.setProgressInfo(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imagejdatatypes.util

Methods in org.hkijena.jipipe.extensions.imagejdatatypes.util with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static void	ImageJUtils.convertHSBToRGB(ij.ImagePlus img, JIPipeProgressInfo progressInfo) Converts an HSB image to RGB (re-using the same components)
static void	ImageJUtils.convertLABToRGB(ij.ImagePlus img, JIPipeProgressInfo progressInfo) Converts an LAB image to RGB L is stored unsigned (0-255) A is stored signed (-128-127) B is stored signed (-128-127)
static void	ImageJUtils.convertRGBToHSB(ij.ImagePlus img, JIPipeProgressInfo progressInfo) Converts an RGB image to HSB (re-using the same components)
static void	ImageJUtils.convertRGBToLAB(ij.ImagePlus img, JIPipeProgressInfo progressInfo) Converts an RGB image to LAB L is stored unsigned (0-255) A is stored signed (-128-127) B is stored signed (-128-127)
static void	ImageJUtils.copyBetweenImages(ij.ImagePlus src, ij.ImagePlus target, JIPipeProgressInfo progressInfo) Copies all data from the source to the target image
ij.ImagePlus	RoiDrawer.draw(ij.ImagePlus reference, ROIListData roisToDraw, JIPipeProgressInfo progressInfo)
static void	ImageJUtils.forEachIndexedSlice(ij.ImagePlus img, BiConsumer<ij.process.ImageProcessor,Integer> function, JIPipeProgressInfo progressInfo) Runs the function for each slice
static void	ImageJUtils.forEachIndexedZCTSlice(ij.ImagePlus img, BiConsumer<ij.process.ImageProcessor,ImageSliceIndex> function, JIPipeProgressInfo progressInfo) Runs the function for each Z, C, and T slice.
static void	ImageJUtils.forEachIndexedZTSlice(ij.ImagePlus img, BiConsumer<Map<Integer,ij.process.ImageProcessor>,ImageSliceIndex> function, JIPipeProgressInfo progressInfo) Runs the function for each Z and T slice.
static void	ImageJUtils.forEachSlice(ij.ImagePlus img, Consumer<ij.process.ImageProcessor> function, JIPipeProgressInfo progressInfo) Runs the function for each slice
static ij.ImagePlus	ImageJUtils.generateForEachIndexedZCTSlice(ij.ImagePlus sourceImage, BiFunction<ij.process.ImageProcessor,ImageSliceIndex,ij.process.ImageProcessor> function, JIPipeProgressInfo progressInfo) Runs the function for each Z, C, and T slice.
static ij.ImagePlus	ImageJUtils.renderToRGBWithLUTIfNeeded(ij.ImagePlus inputImage, JIPipeProgressInfo progressInfo) Renders a non-RGB image to RGB, including LUT
static ij.ImagePlus	ImageJUtils.rotate(ij.ImagePlus img, double degrees, boolean expandCanvas, Color background, boolean addRoi, JIPipeProgressInfo progressInfo) Rotates the image by a specified amount of degrees to the right
void	ImageSource.saveTo(Path storageFilePath, String name, boolean forceName, JIPipeProgressInfo progressInfo) Saves the data stored by this source according to the JIPipe standard format (ImagePlusData
void	ConverterWrapperImageSource.saveTo(Path storageFilePath, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	AsserterWrapperImageSource.saveTo(Path storageFilePath, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static void	ImageJUtils.writeImageToMovie(ij.ImagePlus image, HyperstackDimension followedDimension, int timePerFrame, Path outputFile, AVICompression compression, int jpegQuality, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.imageviewer

Methods in org.hkijena.jipipe.extensions.imageviewer that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	ImageViewerStackExporterRun.getProgressInfo()
JIPipeProgressInfo	ImageViewerVideoExporterRun.getProgressInfo()
JIPipeProgressInfo	ImageViewerPanelRawImageExporterRun.getProgressInfo()

Methods in org.hkijena.jipipe.extensions.imageviewer with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	ImageViewerStackExporterRun.setProgressInfo(JIPipeProgressInfo progressInfo)
void	ImageViewerVideoExporterRun.setProgressInfo(JIPipeProgressInfo progressInfo)
void	ImageViewerPanelRawImageExporterRun.setProgressInfo(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.jsonextensionloader

Methods in org.hkijena.jipipe.extensions.jsonextensionloader with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	JsonExtensionLoaderExtension.register(JIPipe jiPipe, Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.multiparameters

Methods in org.hkijena.jipipe.extensions.multiparameters with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	MultiParameterAlgorithmsExtension.register(JIPipe jiPipe, Context context, JIPipeProgressInfo progressInfo)
void	MultiParametersExtension.register(JIPipe jiPipe, Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.multiparameters.datatypes

Methods in org.hkijena.jipipe.extensions.multiparameters.datatypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	ParametersData.duplicate(JIPipeProgressInfo progressInfo)
void	ParametersData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static ParametersData	ParametersData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
protected void	CachedParametersDataViewerWindow.loadData(JIPipeVirtualData virtualData, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.multiparameters.nodes

Methods in org.hkijena.jipipe.extensions.multiparameters.nodes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	DefineParametersAlgorithm.run(JIPipeProgressInfo progressInfo)
void	ExtractParametersAlgorithm.run(JIPipeProgressInfo progressInfo)
void	DefineParametersTableAlgorithm.run(JIPipeProgressInfo progressInfo)
protected void	AnnotationsToParametersAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ParametersToAnnotationsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	MergeParametersAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	GenerateParametersFromExpressionAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ConvertParametersToTableAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.nodetemplate

Methods in org.hkijena.jipipe.extensions.nodetemplate with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	NodeTemplateBoxToolExtension.register(JIPipe jiPipe, Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.nodetemplate.templatedownloader

Methods in org.hkijena.jipipe.extensions.nodetemplate.templatedownloader that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	NodeTemplateDownloaderRun.getProgressInfo()

Methods in org.hkijena.jipipe.extensions.nodetemplate.templatedownloader with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	NodeTemplateDownloaderRun.setProgressInfo(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.omero

Methods in org.hkijena.jipipe.extensions.omero with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	OMEROExtension.register(JIPipe jiPipe, Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.omero.algorithms

Methods in org.hkijena.jipipe.extensions.omero.algorithms with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	DownloadOMEROTableAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	DownloadOMEROImageAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	UploadOMEROImageAlgorithm.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	UploadOMEROTableAlgorithm.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)
void	UploadOMEROImageAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	DownloadOMEROTableAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	DownloadOMEROImageAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.omero.datasources

Methods in org.hkijena.jipipe.extensions.omero.datasources with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	OMEROImageReferenceDataSource.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	OMEROGroupReferenceDataSource.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	OMEROFindProjectAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	OMERODatasetReferenceDataSource.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	OMEROProjectReferenceDataSource.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
void	OMEROFindGroupAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	OMEROFindDatasetAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	OMEROFindImageAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.omero.datatypes

Methods in org.hkijena.jipipe.extensions.omero.datatypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	OMEROGroupReferenceData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	OMERODatasetReferenceData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	OMEROImageReferenceData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	OMEROProjectReferenceData.duplicate(JIPipeProgressInfo progressInfo)
void	OMEROGroupReferenceData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	OMERODatasetReferenceData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	OMEROImageReferenceData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	OMEROProjectReferenceData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static OMEROGroupReferenceData	OMEROGroupReferenceData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static OMERODatasetReferenceData	OMERODatasetReferenceData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static OMEROImageReferenceData	OMEROImageReferenceData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static OMEROProjectReferenceData	OMEROProjectReferenceData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.omero.util

Methods in org.hkijena.jipipe.extensions.omero.util that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	OMEROGateway.getProgressInfo()

Constructors in org.hkijena.jipipe.extensions.omero.util with parameters of type JIPipeProgressInfo

Constructor and Description
OMEROGateway(LoginCredentials credentials, JIPipeProgressInfo progressInfo)
OMEROImageUploader(LoginCredentials credentials, long datasetId, SecurityContext context, JIPipeProgressInfo progressInfo)
OMEROToJIPipeLogger(JIPipeProgressInfo progressInfo)
OMEROUploadToJIPipeLogger(JIPipeProgressInfo info)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.omnipose

Methods in org.hkijena.jipipe.extensions.omnipose with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	OmniposeExtension.register(JIPipe jiPipe, Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.omnipose.algorithms

Methods in org.hkijena.jipipe.extensions.omnipose.algorithms with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	OmniposeAlgorithm.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	OmniposeTrainingAlgorithm.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.parameters

Methods in org.hkijena.jipipe.extensions.parameters with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	StandardParametersExtension.register(JIPipe jiPipe, Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.pipelinerender

Methods in org.hkijena.jipipe.extensions.pipelinerender that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	RenderPipelineRun.getProgressInfo()

Methods in org.hkijena.jipipe.extensions.pipelinerender with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	PipelineRenderExtension.register(JIPipe jiPipe, Context context, JIPipeProgressInfo progressInfo)
void	RenderPipelineRun.setProgressInfo(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.plots

Methods in org.hkijena.jipipe.extensions.plots with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	CachedPlotViewerWindow.loadData(JIPipeVirtualData virtualData, JIPipeProgressInfo progressInfo)
void	PlotsExtension.register(JIPipe jiPipe, Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.plots.datatypes

Methods in org.hkijena.jipipe.extensions.plots.datatypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	PlotData.duplicate(JIPipeProgressInfo progressInfo)
void	PlotData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static <T extends PlotData> T	PlotData.importData(JIPipeReadDataStorage storage, Class<T> klass, JIPipeProgressInfo progressInfo)
static Pie3DPlotData	Pie3DPlotData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static StackedBarCategoryPlotData	StackedBarCategoryPlotData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static BarCategoryPlotData	BarCategoryPlotData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ScatterXYPlotData	ScatterXYPlotData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static LineCategoryPlotData	LineCategoryPlotData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static HistogramPlotData	HistogramPlotData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static LineXYPlotData	LineXYPlotData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static BarBoxAndWhiskerCategoryPlotData	BarBoxAndWhiskerCategoryPlotData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static Pie2DPlotData	Pie2DPlotData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static LineStatisticalCategoryPlotData	LineStatisticalCategoryPlotData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static BarStatisticalCategoryPlotData	BarStatisticalCategoryPlotData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static PlotDataSeries	PlotDataSeries.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static <T extends PlotData> T	PlotData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.plots.nodes

Methods in org.hkijena.jipipe.extensions.plots.nodes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	PlotTables2Algorithm.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	PlotTablesAlgorithm.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo) Deprecated.

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.processes

Methods in org.hkijena.jipipe.extensions.processes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	ProcessesExtension.register(JIPipe jiPipe, Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.python

Methods in org.hkijena.jipipe.extensions.python that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	PythonPackageLibraryEnvironmentInstaller.getProgressInfo()

Methods in org.hkijena.jipipe.extensions.python with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static void	PythonUtils.cleanup(Map<String,Path> inputSlotPaths, Map<String,Path> outputSlotPaths, JIPipeProgressInfo progressInfo)
static void	PythonUtils.extractOutputs(JIPipeDataBatch dataBatch, Map<String,Path> outputSlotPaths, List<JIPipeOutputDataSlot> outputSlots, JIPipeTextAnnotationMergeMode annotationMergeStrategy, JIPipeProgressInfo progressInfo)
static void	PythonUtils.extractOutputs(JIPipeMergingDataBatch dataBatch, Map<String,Path> outputSlotPaths, List<JIPipeOutputDataSlot> outputSlots, JIPipeTextAnnotationMergeMode annotationMergeStrategy, JIPipeProgressInfo progressInfo)
static void	PythonUtils.extractOutputs(Map<String,Path> outputSlotPaths, List<JIPipeOutputDataSlot> outputSlots, JIPipeProgressInfo progressInfo)
void	PythonPackageLibraryEnvironment.generateCode(StringBuilder code, JIPipeProgressInfo progressInfo) Installs the library if needed
void	JIPipePythonAdapterLibraryEnvironment.install(JIPipeProgressInfo progressInfo)
abstract void	PythonPackageLibraryEnvironment.install(JIPipeProgressInfo progressInfo) Installs the library into the target directory
protected void	PythonPackageLibraryEnvironment.installFromResources(String javaPackage, String globalFolder, Class<?> resourceLoader, JIPipeProgressInfo progressInfo) Installs the library from resources into the target directory
static Map<String,Path>	PythonUtils.installInputSlots(StringBuilder code, JIPipeDataBatch dataBatch, JIPipeGraphNode node, List<JIPipeInputDataSlot> effectiveInputSlots, Path workDirectory, JIPipeProgressInfo progressInfo)
static Map<String,Path>	PythonUtils.installInputSlots(StringBuilder code, JIPipeMergingDataBatch dataBatch, JIPipeGraphNode node, List<JIPipeInputDataSlot> effectiveInputSlots, Path workDirectory, JIPipeProgressInfo progressInfo)
static Map<String,Path>	PythonUtils.installInputSlots(StringBuilder code, List<JIPipeInputDataSlot> effectiveInputSlots, Path workDirectory, JIPipeProgressInfo progressInfo)
static Map<String,Path>	PythonUtils.installOutputSlots(StringBuilder code, List<JIPipeOutputDataSlot> outputSlots, Path workDirectory, JIPipeProgressInfo progressInfo)
void	PythonExtension.register(JIPipe jiPipe, Context context, JIPipeProgressInfo progressInfo)
static void	PythonUtils.runPython(Path scriptFile, PythonEnvironment environment, List<Path> libraryPaths, JIPipeProgressInfo progressInfo) Runs a Python script file
static void	PythonUtils.runPython(String[] arguments, PythonEnvironment environment, List<Path> libraryPaths, Map<String,String> additionalEnvironmentVariables, JIPipeProgressInfo progressInfo) Runs Python with a set of arguments
static void	PythonUtils.runPython(String code, PythonEnvironment environment, List<Path> libraryPaths, JIPipeProgressInfo progressInfo)
void	PythonPackageLibraryEnvironmentInstaller.setProgressInfo(JIPipeProgressInfo progressInfo)
static void	PythonUtils.setupLogger(org.apache.commons.exec.CommandLine commandLine, org.apache.commons.exec.DefaultExecutor executor, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.python.algorithms

Methods in org.hkijena.jipipe.extensions.python.algorithms with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	SimpleIteratingJythonScriptAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	IteratingJythonScriptAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	IteratingPythonScriptAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	MergingJythonScriptAlgorithm.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	MergingPythonScriptAlgorithm.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)
void	JythonScriptAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	PythonScriptAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.python.installers

Methods in org.hkijena.jipipe.extensions.python.installers that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	BasicMinicondaEnvPythonInstaller.getProgressInfo()
JIPipeProgressInfo	SelectSystemPythonInstaller.getProgressInfo()
JIPipeProgressInfo	BasicPortableEnvPythonInstaller.getProgressInfo()
JIPipeProgressInfo	SelectCondaEnvPythonInstaller.getProgressInfo()
JIPipeProgressInfo	SelectVirtualEnvPythonInstaller.getProgressInfo()

Methods in org.hkijena.jipipe.extensions.python.installers with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	BasicMinicondaEnvPythonInstaller.setProgressInfo(JIPipeProgressInfo progressInfo)
void	SelectSystemPythonInstaller.setProgressInfo(JIPipeProgressInfo progressInfo)
void	BasicPortableEnvPythonInstaller.setProgressInfo(JIPipeProgressInfo progressInfo)
void	SelectCondaEnvPythonInstaller.setProgressInfo(JIPipeProgressInfo progressInfo)
void	SelectVirtualEnvPythonInstaller.setProgressInfo(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.r

Methods in org.hkijena.jipipe.extensions.r with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	RExtension.register(JIPipe jiPipe, Context context, JIPipeProgressInfo progressInfo)
static void	RUtils.runR(Path scriptFile, REnvironment environment, JIPipeProgressInfo progressInfo)
static void	RUtils.runR(String script, REnvironment environment, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.r.algorithms

Methods in org.hkijena.jipipe.extensions.r.algorithms with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ImportRDatasetAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	IteratingRScriptAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	MergingRScriptAlgorithm.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.r.installers

Methods in org.hkijena.jipipe.extensions.r.installers that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	REnvInstaller.getProgressInfo()

Methods in org.hkijena.jipipe.extensions.r.installers with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	REnvInstaller.setProgressInfo(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.settings

Methods in org.hkijena.jipipe.extensions.settings that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	CleanBackupsRun.getProgressInfo()

Methods in org.hkijena.jipipe.extensions.settings with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	StandardSettingsExtension.register(JIPipe jiPipe, Context context, JIPipeProgressInfo progressInfo)
void	CleanBackupsRun.setProgressInfo(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.strings

Methods in org.hkijena.jipipe.extensions.strings with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	StringData.duplicate(JIPipeProgressInfo progressInfo)
void	StringData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static StringData	StringData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static JsonData	JsonData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static XMLData	XMLData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
protected void	CachedTextViewerWindow.loadData(JIPipeVirtualData virtualData, JIPipeProgressInfo progressInfo)
void	StringsExtension.register(JIPipe jiPipe, Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.strings.datasources

Methods in org.hkijena.jipipe.extensions.strings.datasources with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	StringDefinitionDataSource.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.tables

Methods in org.hkijena.jipipe.extensions.tables with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	TableColumnReference.duplicate(JIPipeProgressInfo progressInfo)
void	TableColumnReference.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	TablesExtension.register(JIPipe jiPipe, Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.tables.compat

Methods in org.hkijena.jipipe.extensions.tables.compat with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
List<Object>	ResultsTableDataImageJExporter.exportData(JIPipeDataTable dataTable, ImageJExportParameters parameters, JIPipeProgressInfo progressInfo)
JIPipeDataTable	ResultsTableDataImageJImporter.importData(List<Object> objects, ImageJImportParameters parameters, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.tables.datatypes

Methods in org.hkijena.jipipe.extensions.tables.datatypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	ZeroTableColumn.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	DoubleArrayTableColumn.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	RowIndexTableColumn.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	ResultsTableData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	StringArrayTableColumn.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	FloatArrayTableColumn.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	RelabeledTableColumn.duplicate(JIPipeProgressInfo progressInfo)
void	ZeroTableColumn.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	DoubleArrayTableColumn.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	RowIndexTableColumn.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	ResultsTableData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	StringArrayTableColumn.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	FloatArrayTableColumn.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	RelabeledTableColumn.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static AnnotationTableData	AnnotationTableData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ZeroTableColumn	ZeroTableColumn.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static DoubleArrayTableColumn	DoubleArrayTableColumn.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static RowIndexTableColumn	RowIndexTableColumn.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ResultsTableData	ResultsTableData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static StringArrayTableColumn	StringArrayTableColumn.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static FloatArrayTableColumn	FloatArrayTableColumn.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.tables.display

Methods in org.hkijena.jipipe.extensions.tables.display with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	CachedTableViewerWindow.loadData(JIPipeVirtualData virtualData, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.tables.nodes

Methods in org.hkijena.jipipe.extensions.tables.nodes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	ModifyAndMergeTablesScript.run(JIPipeProgressInfo progressInfo)
void	TablesFromScript.run(JIPipeProgressInfo progressInfo)
void	ModifyTablesScript.run(JIPipeProgressInfo progressInfo)
void	DefineTablesAlgorithm.run(JIPipeProgressInfo progressInfo)
protected void	ModifyTableColumnNamesAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	GenerateColumnAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	IntegrateColumnsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ModifyTablesScript.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	GenerateTableFromExpressionAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.tables.nodes.annotations

Methods in org.hkijena.jipipe.extensions.tables.nodes.annotations with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	AddAnnotationColumnsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ConvertAnnotationTableToAnnotatedTables.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	AnnotateByTablePropertiesAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	AnnotateDataWithTableValues.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.tables.nodes.columns

Methods in org.hkijena.jipipe.extensions.tables.nodes.columns with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	RenameSingleColumnsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RenameTableColumnsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RemoveColumnAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ColumnToStringAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ApplyExpressionToColumnsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ColumnToNumericAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ConvertColumnsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RenameTableColumnsToAnnotationAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	SortTableColumnsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ColumnsToAnnotationsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.tables.nodes.filter

Methods in org.hkijena.jipipe.extensions.tables.nodes.filter with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	SliceTableRowsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	FilterTableRowsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	FilterTablesAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.tables.nodes.merge

Methods in org.hkijena.jipipe.extensions.tables.nodes.merge with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	MergeTableColumnsSupplementAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	MergeTableRowsAlgorithm.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	MergeTableColumnsSimpleAlgorithm.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	MergeColumnsAlgorithm.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.tables.nodes.rows

Methods in org.hkijena.jipipe.extensions.tables.nodes.rows with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	SortTableRowsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	AddMissingRowsInSeriesAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ApplyExpressionPerRowAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.tables.nodes.split

Methods in org.hkijena.jipipe.extensions.tables.nodes.split with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	SplitTableIntoColumnsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	SplitTableByColumnsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	SplitTableIntoRowsAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.tables.nodes.transform

Methods in org.hkijena.jipipe.extensions.tables.nodes.transform with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	UnMeltTableAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	MeltTableAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	HistogramAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.tools

Methods in org.hkijena.jipipe.extensions.tools with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	ToolsExtension.register(JIPipe jiPipe, Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.utils

Methods in org.hkijena.jipipe.extensions.utils with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	UtilitiesExtension.register(JIPipe jiPipe, Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.utils.algorithms

Methods in org.hkijena.jipipe.extensions.utils.algorithms with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	UsePlaceholderForMissingDataAlgorithm.runGenerator(JIPipeMergingDataBatch dataBatch, JIPipeDataSlot inputSlot, JIPipeDataSlot outputSlot, JIPipeProgressInfo progressInfo)
protected void	SetVirtualStateAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ConverterAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RunExpressionAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ImportJIPipeSlotFolderAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	ToDataStringAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	DataBatchSlicer.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)
void	SelectDataTableRowsAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	SleepAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	SortRowsByExpressionAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	DataSlicer.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	SortRowsByAnnotationsAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.utils.algorithms.datatable

Methods in org.hkijena.jipipe.extensions.utils.algorithms.datatable with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	PullDataTableAnnotations.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	PushDataTableAnnotations.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	AnnotateWithDataTableProperties.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	MergeDataToTableAlgorithm.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)
void	ExtractTableAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.utils.algorithms.distribute

Methods in org.hkijena.jipipe.extensions.utils.algorithms.distribute with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	DistributeDataRandomlyByCountAlgorithm.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	DistributeDataRandomlyByPercentageAlgorithm.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.utils.algorithms.meta

Methods in org.hkijena.jipipe.extensions.utils.algorithms.meta with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	GetJIPipeSlotFolderAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RunJIPipeProjectAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	PathsToJIPipeProjectParametersAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.utils.algorithms.processes

Methods in org.hkijena.jipipe.extensions.utils.algorithms.processes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	RunProcessIteratingAlgorithm.runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
protected void	RunProcessMergingAlgorithm.runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.extensions.utils.datatypes

Methods in org.hkijena.jipipe.extensions.utils.datatypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	JIPipeOutputData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static JIPipeOutputData	JIPipeOutputData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.ui

Methods in org.hkijena.jipipe.ui that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	ExtractTemplateZipFileRun.getProgressInfo()

Methods in org.hkijena.jipipe.ui with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	ExtractTemplateZipFileRun.setProgressInfo(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.ui.cache

Methods in org.hkijena.jipipe.ui.cache with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected abstract void	JIPipeCacheDataViewerWindow.loadData(JIPipeVirtualData virtualData, JIPipeProgressInfo progressInfo) Instruction to load the data from the current data source

Uses of JIPipeProgressInfo in org.hkijena.jipipe.ui.cache.exporters

Methods in org.hkijena.jipipe.ui.cache.exporters that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	JIPipeDataTableToFilesByMetadataExporterRun.getProgressInfo()
JIPipeProgressInfo	JIPipeDataTableToOutputExporterRun.getProgressInfo()
JIPipeProgressInfo	JIPipeDataTableToZIPExporterRun.getProgressInfo()

Methods in org.hkijena.jipipe.ui.cache.exporters with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	JIPipeDataTableToFilesByMetadataExporterRun.setProgressInfo(JIPipeProgressInfo progressInfo)
void	JIPipeDataTableToOutputExporterRun.setProgressInfo(JIPipeProgressInfo progressInfo)
void	JIPipeDataTableToZIPExporterRun.setProgressInfo(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.ui.cache.importers

Methods in org.hkijena.jipipe.ui.cache.importers that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	JIPipeImportCachedSlotOutputRun.getProgressInfo()

Methods in org.hkijena.jipipe.ui.cache.importers with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	JIPipeImportCachedSlotOutputRun.setProgressInfo(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.ui.data

Methods in org.hkijena.jipipe.ui.data that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	CacheToNonVirtualRun.getProgressInfo()
JIPipeProgressInfo	AllCacheToNonVirtualRun.getProgressInfo()
JIPipeProgressInfo	AllCacheToVirtualRun.getProgressInfo()
JIPipeProgressInfo	CacheToVirtualRun.getProgressInfo()

Methods in org.hkijena.jipipe.ui.data with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	CacheToNonVirtualRun.setProgressInfo(JIPipeProgressInfo progressInfo)
void	AllCacheToNonVirtualRun.setProgressInfo(JIPipeProgressInfo progressInfo)
void	AllCacheToVirtualRun.setProgressInfo(JIPipeProgressInfo progressInfo)
void	CacheToVirtualRun.setProgressInfo(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.ui.documentation

Methods in org.hkijena.jipipe.ui.documentation that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	DownloadOfflineManualRun.getProgressInfo()

Methods in org.hkijena.jipipe.ui.documentation with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	DownloadOfflineManualRun.setProgressInfo(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.ui.extensions

Methods in org.hkijena.jipipe.ui.extensions that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	DeactivateAndApplyUpdateSiteRun.getProgressInfo()
JIPipeProgressInfo	ActivateAndApplyUpdateSiteRun.getProgressInfo()

Methods in org.hkijena.jipipe.ui.extensions with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	DeactivateAndApplyUpdateSiteRun.setProgressInfo(JIPipeProgressInfo progressInfo)
void	ActivateAndApplyUpdateSiteRun.setProgressInfo(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.ui.ijupdater

Methods in org.hkijena.jipipe.ui.ijupdater that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	ActivateUpdateSiteRun.getProgressInfo()
JIPipeProgressInfo	JIPipeProgressAdapter.getProgressInfo()
JIPipeProgressInfo	RefreshRepositoryRun.getProgressInfo()
JIPipeProgressInfo	ApplyRun.getProgressInfo()

Methods in org.hkijena.jipipe.ui.ijupdater with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	ActivateUpdateSiteRun.setProgressInfo(JIPipeProgressInfo progressInfo)
void	RefreshRepositoryRun.setProgressInfo(JIPipeProgressInfo progressInfo)
void	ApplyRun.setProgressInfo(JIPipeProgressInfo progressInfo)

Constructors in org.hkijena.jipipe.ui.ijupdater with parameters of type JIPipeProgressInfo

Constructor and Description
JIPipeProgressAdapter(JIPipeProgressInfo progressInfo)
ProgressAdapter(JIPipeProgressInfo onProgress)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.ui.project

Methods in org.hkijena.jipipe.ui.project that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	LoadResultZipIntoCacheRun.getProgressInfo()
JIPipeProgressInfo	LoadResultDirectoryIntoCacheRun.getProgressInfo()
JIPipeProgressInfo	SaveProjectAndCacheToZipRun.getProgressInfo()
JIPipeProgressInfo	SaveProjectAndCacheToDirectoryRun.getProgressInfo()

Methods in org.hkijena.jipipe.ui.project with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	LoadResultZipIntoCacheRun.setProgressInfo(JIPipeProgressInfo progressInfo)
void	LoadResultDirectoryIntoCacheRun.setProgressInfo(JIPipeProgressInfo progressInfo)
void	SaveProjectAndCacheToZipRun.setProgressInfo(JIPipeProgressInfo progressInfo)
void	SaveProjectAndCacheToDirectoryRun.setProgressInfo(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.ui.project.templatedownloader

Methods in org.hkijena.jipipe.ui.project.templatedownloader that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	ProjectTemplateDownloaderRun.getProgressInfo()

Methods in org.hkijena.jipipe.ui.project.templatedownloader with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	ProjectTemplateDownloaderRun.setProgressInfo(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.ui.quickrun

Methods in org.hkijena.jipipe.ui.quickrun that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	QuickRun.getProgressInfo()

Methods in org.hkijena.jipipe.ui.quickrun with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	QuickRun.setProgressInfo(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.ui.resultanalysis

Methods in org.hkijena.jipipe.ui.resultanalysis that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	JIPipeResultCopyFilesByMetadataExporterRun.getProgressInfo()

Methods in org.hkijena.jipipe.ui.resultanalysis with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	JIPipeResultCopyFilesByMetadataExporterRun.setProgressInfo(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.utils

Methods in org.hkijena.jipipe.utils that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	ProcessUtils.ProcessTree.getProgressInfo()
JIPipeProgressInfo	ProcessUtils.ExtendedExecutor.getProgressInfo()

Methods in org.hkijena.jipipe.utils with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static void	PathUtils.copyOrLink(Path source, Path target, JIPipeProgressInfo progressInfo)
static void	ArchiveUtils.decompressTarGZ(Path zipFile, Path targetDir, JIPipeProgressInfo progressInfo)
static void	ArchiveUtils.decompressZipFile(Path zipFile, Path targetDir, JIPipeProgressInfo progressInfo) Unzips a file
static void	PathUtils.deleteDirectoryRecursively(Path path, JIPipeProgressInfo progressInfo)
static void	WebUtils.download(URL url, Path outputFile, String label, JIPipeProgressInfo progressInfo)
static void	WebUtils.downloadNative(URL url, Path outputFile, String label, JIPipeProgressInfo progressInfo) The native download method written in Java
static void	ProcessUtils.killProcessTree(long pid, JIPipeProgressInfo progressInfo)
static String	ProcessUtils.queryFast(Path executable, JIPipeProgressInfo progressInfo, String... args) Queries standard output with a timeout.
static void	ProcessUtils.runProcess(ProcessEnvironment environment, ExpressionVariables variables, JIPipeProgressInfo progressInfo) Runs a process
static void	ProcessUtils.setupLogger(org.apache.commons.exec.CommandLine commandLine, org.apache.commons.exec.DefaultExecutor executor, JIPipeProgressInfo progressInfo)

Constructors in org.hkijena.jipipe.utils with parameters of type JIPipeProgressInfo

Constructor and Description
ExtendedExecutor(long timeout, JIPipeProgressInfo progressInfo)
IJLogToJIPipeProgressInfoPump(JIPipeProgressInfo target)
ProcessTree(Process process, JIPipeProgressInfo progressInfo)
RunCancellationExecuteWatchdog(long timeout, JIPipeProgressInfo progressInfo, ProcessUtils.ExtendedExecutor extendedExecutor) Creates a new watchdog with a given timeout.
RunCancellationWatchdog(JIPipeProgressInfo progressInfo)