org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.modify

Class ChangeRoiPropertiesFromAnnotationsAlgorithm

java.lang.Object

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.modify.ChangeRoiPropertiesFromAnnotationsAlgorithm

All Implemented Interfaces:

JIPipeValidatable, JIPipeAdaptiveParametersAlgorithm, JIPipeDataBatchAlgorithm, JIPipeParallelizedAlgorithm, JIPipeParameterCollection

public class ChangeRoiPropertiesFromAnnotationsAlgorithm
extends JIPipeSimpleIteratingAlgorithm

Wrapper around RoiManager

Nested Class Summary

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

JIPipeAlgorithm.StateSerializer

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterUIChangedEvent

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
ChangeRoiPropertiesFromAnnotationsAlgorithm(ChangeRoiPropertiesFromAnnotationsAlgorithm other) Instantiates a new node type.
ChangeRoiPropertiesFromAnnotationsAlgorithm(JIPipeNodeInfo info) Instantiates a new node type.

Method Summary

Modifier and Type	Method and Description
OptionalAnnotationNameParameter	getCenterScale()
OptionalAnnotationNameParameter	getFillColor()
OptionalAnnotationNameParameter	getLineColor()
OptionalAnnotationNameParameter	getLineWidth()
OptionalAnnotationNameParameter	getPositionC()
OptionalAnnotationNameParameter	getPositionT()
OptionalAnnotationNameParameter	getPositionX()
OptionalAnnotationNameParameter	getPositionY()
OptionalAnnotationNameParameter	getPositionZ()
OptionalAnnotationNameParameter	getRoiName()
OptionalAnnotationNameParameter	getScaleX()
OptionalAnnotationNameParameter	getScaleY()
protected void	runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo) Runs code on one data row
void	setCenterScale(OptionalAnnotationNameParameter centerScale)
void	setFillColor(OptionalAnnotationNameParameter fillColor)
void	setLineColor(OptionalAnnotationNameParameter lineColor)
void	setLineWidth(OptionalAnnotationNameParameter lineWidth)
void	setPositionC(OptionalAnnotationNameParameter positionC)
void	setPositionT(OptionalAnnotationNameParameter positionT)
void	setPositionX(OptionalAnnotationNameParameter positionX)
void	setPositionY(OptionalAnnotationNameParameter positionY)
void	setPositionZ(OptionalAnnotationNameParameter positionZ)
void	setRoiName(OptionalAnnotationNameParameter roiName)
void	setScaleX(OptionalAnnotationNameParameter scaleX)
void	setScaleY(OptionalAnnotationNameParameter scaleY)

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

generateDataBatchesDryRun, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getParallelizationBatchSize, isParallelizationEnabled, isParameterUIVisible, isParameterUIVisible, reportValidity, runParameterSet, runPassThrough, setParallelizationEnabled, supportsParallelization

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, run

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, canPassThrough, getStateId, getThreadPool, isEnabled, isPassThrough, isPostprocessor, isPreprocessor, loadExample, runPassThrough, setEnabled, setPassThrough, setThreadPool

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, fromJson, fromJsonNode, getAliasIdInParentGraph, getBaseDirectory, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getDependencies, getDisplayName, getEventBus, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getLocations, getLocationWithin, getName, getNewScratch, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProjectCompartment, getProjectDirectory, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isVisibleIn, onDeserialized, onParameterChanged, onParameterStructureChanged, onParameterUIChanged, onSlotConfigurationChanged, onSlotConnected, onSlotDisconnected, registerSubParameter, renderInputSlots, renderOutputSlots, setAllSlotsVirtual, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setLocations, setLocationWithin, setLocationWithin, setParentGraph, setProjectDirectory, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, toggleSlot, toJson, triggerSlotsChangedEvent, updateGraphNodeSlots, updateSlotInheritance

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

addParameterChangeListener, addParameterChangeListener, getContextActions, getParameter, getParameterAccess, setParameter, triggerParameterChange, triggerParameterStructureChange, triggerParameterUIChange

Constructor Detail

ChangeRoiPropertiesFromAnnotationsAlgorithm

public ChangeRoiPropertiesFromAnnotationsAlgorithm(JIPipeNodeInfo info)

Instantiates a new node type.

Parameters:

info - the info

ChangeRoiPropertiesFromAnnotationsAlgorithm

public ChangeRoiPropertiesFromAnnotationsAlgorithm(ChangeRoiPropertiesFromAnnotationsAlgorithm other)

Instantiates a new node type.

Parameters:

other - the other

Method Detail

runIteration

protected void runIteration(JIPipeDataBatch dataBatch,
                            JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeSimpleIteratingAlgorithm

Runs code on one data row

Specified by:

runIteration in class JIPipeSimpleIteratingAlgorithm

Parameters:

dataBatch - The data interface

progressInfo - the progress info from the run

getPositionX

public OptionalAnnotationNameParameter getPositionX()

setPositionX

public void setPositionX(OptionalAnnotationNameParameter positionX)

getPositionY

public OptionalAnnotationNameParameter getPositionY()

setPositionY

public void setPositionY(OptionalAnnotationNameParameter positionY)

getPositionZ

public OptionalAnnotationNameParameter getPositionZ()

setPositionZ

public void setPositionZ(OptionalAnnotationNameParameter positionZ)

getPositionC

public OptionalAnnotationNameParameter getPositionC()

setPositionC

public void setPositionC(OptionalAnnotationNameParameter positionC)

getPositionT

public OptionalAnnotationNameParameter getPositionT()

setPositionT

public void setPositionT(OptionalAnnotationNameParameter positionT)

getFillColor

public OptionalAnnotationNameParameter getFillColor()

setFillColor

public void setFillColor(OptionalAnnotationNameParameter fillColor)

getLineColor

public OptionalAnnotationNameParameter getLineColor()

setLineColor

public void setLineColor(OptionalAnnotationNameParameter lineColor)

getLineWidth

public OptionalAnnotationNameParameter getLineWidth()

setLineWidth

public void setLineWidth(OptionalAnnotationNameParameter lineWidth)

getRoiName

public OptionalAnnotationNameParameter getRoiName()

setRoiName

public void setRoiName(OptionalAnnotationNameParameter roiName)

getScaleX

public OptionalAnnotationNameParameter getScaleX()

setScaleX

public void setScaleX(OptionalAnnotationNameParameter scaleX)

getScaleY

public OptionalAnnotationNameParameter getScaleY()

setScaleY

public void setScaleY(OptionalAnnotationNameParameter scaleY)

getCenterScale

public OptionalAnnotationNameParameter getCenterScale()

setCenterScale

public void setCenterScale(OptionalAnnotationNameParameter centerScale)