org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.modify

Class ChangeRoiPropertiesFromExpressionsAlgorithm

java.lang.Object

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.modify.ChangeRoiPropertiesFromExpressionsAlgorithm

All Implemented Interfaces:

JIPipeValidatable, JIPipeAdaptiveParametersAlgorithm, JIPipeDataBatchAlgorithm, JIPipeParallelizedAlgorithm, JIPipeParameterCollection

public class ChangeRoiPropertiesFromExpressionsAlgorithm
extends JIPipeIteratingAlgorithm

Wrapper around RoiManager

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	ChangeRoiPropertiesFromExpressionsAlgorithm.VariableSource

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

JIPipeAlgorithm.StateSerializer

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterUIChangedEvent

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
ChangeRoiPropertiesFromExpressionsAlgorithm(ChangeRoiPropertiesFromExpressionsAlgorithm other) Instantiates a new node type.
ChangeRoiPropertiesFromExpressionsAlgorithm(JIPipeNodeInfo info) Instantiates a new node type.

Method Summary

Modifier and Type	Method and Description
OptionalDefaultExpressionParameter	getCenterScale()
CustomExpressionVariablesParameter	getCustomFilterVariables()
OptionalDefaultExpressionParameter	getFillColor()
OptionalDefaultExpressionParameter	getLineColor()
OptionalDefaultExpressionParameter	getLineWidth()
ImageStatisticsSetParameter	getMeasurements()
OptionalDefaultExpressionParameter	getPositionC()
OptionalDefaultExpressionParameter	getPositionT()
OptionalDefaultExpressionParameter	getPositionX()
OptionalDefaultExpressionParameter	getPositionY()
OptionalDefaultExpressionParameter	getPositionZ()
OptionalDefaultExpressionParameter	getRoiName()
OptionalDefaultExpressionParameter	getScaleX()
OptionalDefaultExpressionParameter	getScaleY()
boolean	isMeasureInPhysicalUnits()
void	run(JIPipeProgressInfo progressInfo) Runs the workload
protected void	runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo) Runs code on one data row
void	setCenterScale(OptionalDefaultExpressionParameter centerScale)
void	setFillColor(OptionalDefaultExpressionParameter fillColor)
void	setLineColor(OptionalDefaultExpressionParameter lineColor)
void	setLineWidth(OptionalDefaultExpressionParameter lineWidth)
void	setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	setMeasurements(ImageStatisticsSetParameter measurements)
void	setPositionC(OptionalDefaultExpressionParameter positionC)
void	setPositionT(OptionalDefaultExpressionParameter positionT)
void	setPositionX(OptionalDefaultExpressionParameter positionX)
void	setPositionY(OptionalDefaultExpressionParameter positionY)
void	setPositionZ(OptionalDefaultExpressionParameter positionZ)
void	setRoiName(OptionalDefaultExpressionParameter roiName)
void	setScaleX(OptionalDefaultExpressionParameter scaleX)
void	setScaleY(OptionalDefaultExpressionParameter scaleY)

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

generateDataBatchesDryRun, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getParallelizationBatchSize, isParallelizationEnabled, isParameterUIVisible, isParameterUIVisible, runParameterSet, runPassThrough, setParallelizationEnabled, supportsParallelization

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, canPassThrough, getStateId, getThreadPool, isEnabled, isPassThrough, isPostprocessor, isPreprocessor, loadExample, reportValidity, runPassThrough, setEnabled, setPassThrough, setThreadPool

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, fromJson, fromJsonNode, getAliasIdInParentGraph, getBaseDirectory, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getDependencies, getDisplayName, getEventBus, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getLocations, getLocationWithin, getName, getNewScratch, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProjectCompartment, getProjectDirectory, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isVisibleIn, onDeserialized, onParameterChanged, onParameterStructureChanged, onParameterUIChanged, onSlotConfigurationChanged, onSlotConnected, onSlotDisconnected, registerSubParameter, renderInputSlots, renderOutputSlots, setAllSlotsVirtual, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setLocations, setLocationWithin, setLocationWithin, setParentGraph, setProjectDirectory, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, toggleSlot, toJson, triggerSlotsChangedEvent, updateGraphNodeSlots, updateSlotInheritance

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

addParameterChangeListener, addParameterChangeListener, getContextActions, getParameter, getParameterAccess, setParameter, triggerParameterChange, triggerParameterStructureChange, triggerParameterUIChange

Constructor Detail

ChangeRoiPropertiesFromExpressionsAlgorithm

public ChangeRoiPropertiesFromExpressionsAlgorithm(JIPipeNodeInfo info)

Instantiates a new node type.

Parameters:

info - the info

ChangeRoiPropertiesFromExpressionsAlgorithm

public ChangeRoiPropertiesFromExpressionsAlgorithm(ChangeRoiPropertiesFromExpressionsAlgorithm other)

Instantiates a new node type.

Parameters:

other - the other

Method Detail

run

public void run(JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeGraphNode

Runs the workload

Overrides:

run in class JIPipeParameterSlotAlgorithm

Parameters:

progressInfo - progress passed from the runner

runIteration

protected void runIteration(JIPipeDataBatch dataBatch,
                            JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeIteratingAlgorithm

Runs code on one data row

Specified by:

runIteration in class JIPipeIteratingAlgorithm

Parameters:

dataBatch - The data interface

progressInfo - the progress info from the run

getPositionX

public OptionalDefaultExpressionParameter getPositionX()

setPositionX

public void setPositionX(OptionalDefaultExpressionParameter positionX)

getPositionY

public OptionalDefaultExpressionParameter getPositionY()

setPositionY

public void setPositionY(OptionalDefaultExpressionParameter positionY)

getPositionZ

public OptionalDefaultExpressionParameter getPositionZ()

setPositionZ

public void setPositionZ(OptionalDefaultExpressionParameter positionZ)

getPositionC

public OptionalDefaultExpressionParameter getPositionC()

setPositionC

public void setPositionC(OptionalDefaultExpressionParameter positionC)

getPositionT

public OptionalDefaultExpressionParameter getPositionT()

setPositionT

public void setPositionT(OptionalDefaultExpressionParameter positionT)

getFillColor

public OptionalDefaultExpressionParameter getFillColor()

setFillColor

public void setFillColor(OptionalDefaultExpressionParameter fillColor)

getLineColor

public OptionalDefaultExpressionParameter getLineColor()

setLineColor

public void setLineColor(OptionalDefaultExpressionParameter lineColor)

getLineWidth

public OptionalDefaultExpressionParameter getLineWidth()

setLineWidth

public void setLineWidth(OptionalDefaultExpressionParameter lineWidth)

getRoiName

public OptionalDefaultExpressionParameter getRoiName()

setRoiName

public void setRoiName(OptionalDefaultExpressionParameter roiName)

getScaleX

public OptionalDefaultExpressionParameter getScaleX()

setScaleX

public void setScaleX(OptionalDefaultExpressionParameter scaleX)

getScaleY

public OptionalDefaultExpressionParameter getScaleY()

setScaleY

public void setScaleY(OptionalDefaultExpressionParameter scaleY)

getCenterScale

public OptionalDefaultExpressionParameter getCenterScale()

setCenterScale

public void setCenterScale(OptionalDefaultExpressionParameter centerScale)

getMeasurements

public ImageStatisticsSetParameter getMeasurements()

setMeasurements

public void setMeasurements(ImageStatisticsSetParameter measurements)

getCustomFilterVariables

public CustomExpressionVariablesParameter getCustomFilterVariables()

isMeasureInPhysicalUnits

public boolean isMeasureInPhysicalUnits()

setMeasureInPhysicalUnits

public void setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)