org.hkijena.jipipe.api.nodes

Class JIPipeParameterSlotAlgorithm

java.lang.Object

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

All Implemented Interfaces:

JIPipeValidatable, JIPipeParameterCollection

Direct Known Subclasses:

AnnotateWithAnnotationTable, DataSlicer, ExtractTableAlgorithm, GenerateRandomUniqueAnnotation, JIPipeIteratingAlgorithm, JIPipeIteratingMissingDataGeneratorAlgorithm, JIPipeMergingAlgorithm, JIPipeMissingDataGeneratorAlgorithm, JIPipeSimpleIteratingAlgorithm, JIPipeSingleIterationAlgorithm, JythonScriptAlgorithm, OMEROFindDatasetAlgorithm, OMEROFindGroupAlgorithm, OMEROFindImageAlgorithm, PythonScriptAlgorithm, RemoveArrayAnnotationsAlgorithm, RemoveNAAnnotationColumnsAlgorithm, SelectDataTableRowsAlgorithm, SleepAlgorithm, SortRowsByAnnotationsAlgorithm, SortRowsByExpressionAlgorithm, TemporaryFileDataSource, TemporaryFolderDataSource

public abstract class JIPipeParameterSlotAlgorithm
extends JIPipeAlgorithm

An JIPipeAlgorithm that has an optional slot that allows to supply parameter data sets.

Nested Class Summary

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

JIPipeAlgorithm.StateSerializer

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterUIChangedEvent

Field Summary

Fields

Modifier and Type	Field and Description
static String	SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
JIPipeParameterSlotAlgorithm(JIPipeNodeInfo info)
JIPipeParameterSlotAlgorithm(JIPipeNodeInfo info, JIPipeSlotConfiguration slotConfiguration)
JIPipeParameterSlotAlgorithm(JIPipeParameterSlotAlgorithm other)

Method Summary

Modifier and Type	Method and Description
int	getDataInputSlotCount() Returns the number of input slots that are not parameter slots.
List<JIPipeInputDataSlot>	getDataInputSlots() Method that can be overwritten by child classes.
JIPipeInputDataSlot	getFirstInputSlot() Returns the first input slot according to the slot order.
List<JIPipeInputDataSlot>	getNonParameterInputSlots()
JIPipeDataSlot	getParameterSlot() Returns the parameter slot if enabled
JIPipeParameterSlotAlgorithmSettings	getParameterSlotAlgorithmSettings()
boolean	isParameterUIVisible(JIPipeParameterTree tree, JIPipeParameterCollection subParameter) Allows to override the visibility of sub-parameters inside the UI
void	run(JIPipeProgressInfo progressInfo) Runs the workload
abstract void	runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations) Runs a parameter set iteration

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, canPassThrough, getStateId, getThreadPool, isEnabled, isParameterUIVisible, isPassThrough, isPostprocessor, isPreprocessor, loadExample, reportValidity, runPassThrough, setEnabled, setPassThrough, setThreadPool

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, fromJson, fromJsonNode, getAliasIdInParentGraph, getBaseDirectory, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getDependencies, getDisplayName, getEventBus, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getLocations, getLocationWithin, getName, getNewScratch, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProjectCompartment, getProjectDirectory, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isVisibleIn, onDeserialized, onParameterChanged, onParameterStructureChanged, onParameterUIChanged, onSlotConfigurationChanged, onSlotConnected, onSlotDisconnected, registerSubParameter, renderInputSlots, renderOutputSlots, setAllSlotsVirtual, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setLocations, setLocationWithin, setLocationWithin, setParentGraph, setProjectDirectory, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, toggleSlot, toJson, triggerSlotsChangedEvent, updateGraphNodeSlots, updateSlotInheritance

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

addParameterChangeListener, addParameterChangeListener, getContextActions, getParameter, getParameterAccess, setParameter, triggerParameterChange, triggerParameterStructureChange, triggerParameterUIChange

Field Detail

SLOT_PARAMETERS

public static final String SLOT_PARAMETERS

See Also:

Constant Field Values

Constructor Detail

JIPipeParameterSlotAlgorithm

public JIPipeParameterSlotAlgorithm(JIPipeNodeInfo info,
                                    JIPipeSlotConfiguration slotConfiguration)

JIPipeParameterSlotAlgorithm

public JIPipeParameterSlotAlgorithm(JIPipeNodeInfo info)

JIPipeParameterSlotAlgorithm

public JIPipeParameterSlotAlgorithm(JIPipeParameterSlotAlgorithm other)

Method Detail

getDataInputSlotCount

public int getDataInputSlotCount()

Returns the number of input slots that are not parameter slots.

Returns:

the number of input slots that are not parameter slots.

getNonParameterInputSlots

public List<JIPipeInputDataSlot> getNonParameterInputSlots()

getDataInputSlots

public List<JIPipeInputDataSlot> getDataInputSlots()

Description copied from class: JIPipeGraphNode

Method that can be overwritten by child classes. Should return slots that are actually used as data input.

Overrides:

getDataInputSlots in class JIPipeGraphNode

Returns:

Input slots

getFirstInputSlot

public JIPipeInputDataSlot getFirstInputSlot()

Description copied from class: JIPipeGraphNode

Returns the first input slot according to the slot order. Throws IndexOutOfBoundsException if there is no input slot.

Overrides:

getFirstInputSlot in class JIPipeGraphNode

Returns:

Slot instance

getParameterSlotAlgorithmSettings

public JIPipeParameterSlotAlgorithmSettings getParameterSlotAlgorithmSettings()

isParameterUIVisible

public boolean isParameterUIVisible(JIPipeParameterTree tree,
                                    JIPipeParameterCollection subParameter)

Description copied from interface: JIPipeParameterCollection

Allows to override the visibility of sub-parameters inside the UI

Parameters:

tree - the parameter tree that is used to access this parameter

subParameter - a sub parameter

Returns:

if the parameter is visible inside the UI

getParameterSlot

public JIPipeDataSlot getParameterSlot()

Returns the parameter slot if enabled

Returns:

the parameter slot

run

public void run(JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeGraphNode

Runs the workload

Overrides:

run in class JIPipeAlgorithm

Parameters:

progressInfo - progress passed from the runner

runParameterSet

public abstract void runParameterSet(JIPipeProgressInfo progressInfo,
                                     List<JIPipeTextAnnotation> parameterAnnotations)

Runs a parameter set iteration

Parameters:

progressInfo - progress info from the run

parameterAnnotations - parameter annotations