org.hkijena.jipipe.extensions.annotation.algorithms

Class AnnotateWithAnnotationTable

java.lang.Object

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithAnnotationTable

All Implemented Interfaces:

JIPipeValidatable, JIPipeParameterCollection

public class AnnotateWithAnnotationTable
extends JIPipeParameterSlotAlgorithm

Algorithm that merges the annotations of all inputs and outputs the data with the shared annotations

Nested Class Summary

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

JIPipeAlgorithm.StateSerializer

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterUIChangedEvent

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
AnnotateWithAnnotationTable(AnnotateWithAnnotationTable other) Creates a copy
AnnotateWithAnnotationTable(JIPipeNodeInfo info) Creates a new instance

Method Summary

Modifier and Type	Method and Description
protected boolean	canPassThrough() Returns true if the algorithm can apply pass-through.
JIPipeIteratingAlgorithmDataBatchGenerationSettings	getTableMergeSettings()
boolean	isDiscardExistingAnnotations()
void	runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations) Runs a parameter set iteration
protected void	runPassThrough(JIPipeProgressInfo progressInfo) Runs the pass through.
void	setDiscardExistingAnnotations(boolean discardExistingAnnotations)

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, isParameterUIVisible, run

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, getStateId, getThreadPool, isEnabled, isParameterUIVisible, isPassThrough, isPostprocessor, isPreprocessor, loadExample, reportValidity, setEnabled, setPassThrough, setThreadPool

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, fromJson, fromJsonNode, getAliasIdInParentGraph, getBaseDirectory, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getDependencies, getDisplayName, getEventBus, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getLocations, getLocationWithin, getName, getNewScratch, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProjectCompartment, getProjectDirectory, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isVisibleIn, onDeserialized, onParameterChanged, onParameterStructureChanged, onParameterUIChanged, onSlotConfigurationChanged, onSlotConnected, onSlotDisconnected, registerSubParameter, renderInputSlots, renderOutputSlots, setAllSlotsVirtual, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setLocations, setLocationWithin, setLocationWithin, setParentGraph, setProjectDirectory, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, toggleSlot, toJson, triggerSlotsChangedEvent, updateGraphNodeSlots, updateSlotInheritance

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

addParameterChangeListener, addParameterChangeListener, getContextActions, getParameter, getParameterAccess, setParameter, triggerParameterChange, triggerParameterStructureChange, triggerParameterUIChange

Constructor Detail

AnnotateWithAnnotationTable

public AnnotateWithAnnotationTable(JIPipeNodeInfo info)

Creates a new instance

Parameters:

info - the info

AnnotateWithAnnotationTable

public AnnotateWithAnnotationTable(AnnotateWithAnnotationTable other)

Creates a copy

Parameters:

other - the original

Method Detail

getTableMergeSettings

public JIPipeIteratingAlgorithmDataBatchGenerationSettings getTableMergeSettings()

runParameterSet

public void runParameterSet(JIPipeProgressInfo progressInfo,
                            List<JIPipeTextAnnotation> parameterAnnotations)

Description copied from class: JIPipeParameterSlotAlgorithm

Runs a parameter set iteration

Specified by:

runParameterSet in class JIPipeParameterSlotAlgorithm

Parameters:

progressInfo - progress info from the run

parameterAnnotations - parameter annotations

canPassThrough

protected boolean canPassThrough()

Description copied from class: JIPipeAlgorithm

Returns true if the algorithm can apply pass-through. Override this method to implement your own checks

Overrides:

canPassThrough in class JIPipeAlgorithm

Returns:

true if the algorithm can apply pass-through

runPassThrough

protected void runPassThrough(JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeAlgorithm

Runs the pass through. Override this for custom implementations if you want

Overrides:

runPassThrough in class JIPipeAlgorithm

Parameters:

progressInfo - the progress

isDiscardExistingAnnotations

public boolean isDiscardExistingAnnotations()

setDiscardExistingAnnotations

public void setDiscardExistingAnnotations(boolean discardExistingAnnotations)