org.hkijena.jipipe.extensions.omero.datasources

Class OMEROFindImageAlgorithm

java.lang.Object

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm

All Implemented Interfaces:

JIPipeValidatable, JIPipeParameterCollection

public class OMEROFindImageAlgorithm
extends JIPipeParameterSlotAlgorithm

Nested Class Summary

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

JIPipeAlgorithm.StateSerializer

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterUIChangedEvent

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
OMEROFindImageAlgorithm(JIPipeNodeInfo info)
OMEROFindImageAlgorithm(OMEROFindImageAlgorithm other)

Method Summary

Modifier and Type	Method and Description
OMEROCredentials	getCredentials()
OptionalAnnotationNameParameter	getDatasetNameAnnotation()
OptionalAnnotationNameParameter	getImageNameAnnotation()
StringQueryExpression	getImageNameFilters()
StringMapQueryExpression	getKeyValuePairFilters()
OptionalAnnotationNameParameter	getProjectNameAnnotation()
OptionalAnnotationNameParameter	getTagAnnotation()
StringMapQueryExpression	getTagFilters()
boolean	isAddKeyValuePairsAsAnnotations()
void	reportValidity(JIPipeIssueReport report) Generates a validity report
void	runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations) Runs a parameter set iteration
void	setAddKeyValuePairsAsAnnotations(boolean addKeyValuePairsAsAnnotations)
void	setDatasetNameAnnotation(OptionalAnnotationNameParameter datasetNameAnnotation)
void	setImageNameAnnotation(OptionalAnnotationNameParameter imageNameAnnotation)
void	setImageNameFilters(StringQueryExpression imageNameFilters)
void	setKeyValuePairFilters(StringMapQueryExpression keyValuePairFilters)
void	setProjectNameAnnotation(OptionalAnnotationNameParameter projectNameAnnotation)
void	setTagAnnotation(OptionalAnnotationNameParameter tagAnnotation)
void	setTagFilters(StringMapQueryExpression tagFilters)

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, isParameterUIVisible, run

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, canPassThrough, getStateId, getThreadPool, isEnabled, isParameterUIVisible, isPassThrough, isPostprocessor, isPreprocessor, loadExample, runPassThrough, setEnabled, setPassThrough, setThreadPool

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, fromJson, fromJsonNode, getAliasIdInParentGraph, getBaseDirectory, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getDependencies, getDisplayName, getEventBus, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getLocations, getLocationWithin, getName, getNewScratch, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProjectCompartment, getProjectDirectory, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isVisibleIn, onDeserialized, onParameterChanged, onParameterStructureChanged, onParameterUIChanged, onSlotConfigurationChanged, onSlotConnected, onSlotDisconnected, registerSubParameter, renderInputSlots, renderOutputSlots, setAllSlotsVirtual, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setLocations, setLocationWithin, setLocationWithin, setParentGraph, setProjectDirectory, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, toggleSlot, toJson, triggerSlotsChangedEvent, updateGraphNodeSlots, updateSlotInheritance

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

addParameterChangeListener, addParameterChangeListener, getContextActions, getParameter, getParameterAccess, setParameter, triggerParameterChange, triggerParameterStructureChange, triggerParameterUIChange

Constructor Detail

OMEROFindImageAlgorithm

public OMEROFindImageAlgorithm(JIPipeNodeInfo info)

OMEROFindImageAlgorithm

public OMEROFindImageAlgorithm(OMEROFindImageAlgorithm other)

Method Detail

runParameterSet

public void runParameterSet(JIPipeProgressInfo progressInfo,
                            List<JIPipeTextAnnotation> parameterAnnotations)

Description copied from class: JIPipeParameterSlotAlgorithm

Runs a parameter set iteration

Specified by:

runParameterSet in class JIPipeParameterSlotAlgorithm

Parameters:

progressInfo - progress info from the run

parameterAnnotations - parameter annotations

getImageNameFilters

public StringQueryExpression getImageNameFilters()

setImageNameFilters

public void setImageNameFilters(StringQueryExpression imageNameFilters)

getCredentials

public OMEROCredentials getCredentials()

reportValidity

public void reportValidity(JIPipeIssueReport report)

Description copied from interface: JIPipeValidatable

Generates a validity report

Specified by:

reportValidity in interface JIPipeValidatable

Overrides:

reportValidity in class JIPipeAlgorithm

Parameters:

report - the report to be added to

getDatasetNameAnnotation

public OptionalAnnotationNameParameter getDatasetNameAnnotation()

setDatasetNameAnnotation

public void setDatasetNameAnnotation(OptionalAnnotationNameParameter datasetNameAnnotation)

getProjectNameAnnotation

public OptionalAnnotationNameParameter getProjectNameAnnotation()

setProjectNameAnnotation

public void setProjectNameAnnotation(OptionalAnnotationNameParameter projectNameAnnotation)

getImageNameAnnotation

public OptionalAnnotationNameParameter getImageNameAnnotation()

setImageNameAnnotation

public void setImageNameAnnotation(OptionalAnnotationNameParameter imageNameAnnotation)

isAddKeyValuePairsAsAnnotations

public boolean isAddKeyValuePairsAsAnnotations()

setAddKeyValuePairsAsAnnotations

public void setAddKeyValuePairsAsAnnotations(boolean addKeyValuePairsAsAnnotations)

getKeyValuePairFilters

public StringMapQueryExpression getKeyValuePairFilters()

setKeyValuePairFilters

public void setKeyValuePairFilters(StringMapQueryExpression keyValuePairFilters)

getTagFilters

public StringMapQueryExpression getTagFilters()

setTagFilters

public void setTagFilters(StringMapQueryExpression tagFilters)

getTagAnnotation

public OptionalAnnotationNameParameter getTagAnnotation()

setTagAnnotation

public void setTagAnnotation(OptionalAnnotationNameParameter tagAnnotation)