org.hkijena.jipipe.extensions.omero.datasources

Class OMEROFindProjectAlgorithm

java.lang.Object

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

org.hkijena.jipipe.extensions.omero.datasources.OMEROFindProjectAlgorithm

All Implemented Interfaces:

JIPipeValidatable, JIPipeAdaptiveParametersAlgorithm, JIPipeDataBatchAlgorithm, JIPipeParallelizedAlgorithm, JIPipeParameterCollection

public class OMEROFindProjectAlgorithm
extends JIPipeSimpleIteratingAlgorithm

Nested Class Summary

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

JIPipeAlgorithm.StateSerializer

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterUIChangedEvent

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
OMEROFindProjectAlgorithm(JIPipeNodeInfo info)
OMEROFindProjectAlgorithm(OMEROFindProjectAlgorithm other)

Method Summary

Modifier and Type	Method and Description
OMEROCredentials	getCredentials()
StringMapQueryExpression	getKeyValuePairFilters()
OptionalAnnotationNameParameter	getProjectNameAnnotation()
StringQueryExpression	getProjectNameFilters()
OptionalAnnotationNameParameter	getTagAnnotation()
StringMapQueryExpression	getTagFilters()
boolean	isAddKeyValuePairsAsAnnotations()
void	reportValidity(JIPipeIssueReport report) Generates a validity report
protected void	runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo) Runs code on one data row
void	setAddKeyValuePairsAsAnnotations(boolean addKeyValuePairsAsAnnotations)
void	setKeyValuePairFilters(StringMapQueryExpression keyValuePairFilters)
void	setProjectNameAnnotation(OptionalAnnotationNameParameter projectNameAnnotation)
void	setProjectNameFilters(StringQueryExpression projectNameFilters)
void	setTagAnnotation(OptionalAnnotationNameParameter tagAnnotation)
void	setTagFilters(StringMapQueryExpression tagFilters)

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

generateDataBatchesDryRun, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getParallelizationBatchSize, isParallelizationEnabled, isParameterUIVisible, isParameterUIVisible, runParameterSet, runPassThrough, setParallelizationEnabled, supportsParallelization

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, run

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, canPassThrough, getStateId, getThreadPool, isEnabled, isPassThrough, isPostprocessor, isPreprocessor, loadExample, runPassThrough, setEnabled, setPassThrough, setThreadPool

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, fromJson, fromJsonNode, getAliasIdInParentGraph, getBaseDirectory, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getDependencies, getDisplayName, getEventBus, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getLocations, getLocationWithin, getName, getNewScratch, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProjectCompartment, getProjectDirectory, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isVisibleIn, onDeserialized, onParameterChanged, onParameterStructureChanged, onParameterUIChanged, onSlotConfigurationChanged, onSlotConnected, onSlotDisconnected, registerSubParameter, renderInputSlots, renderOutputSlots, setAllSlotsVirtual, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setLocations, setLocationWithin, setLocationWithin, setParentGraph, setProjectDirectory, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, toggleSlot, toJson, triggerSlotsChangedEvent, updateGraphNodeSlots, updateSlotInheritance

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

addParameterChangeListener, addParameterChangeListener, getContextActions, getParameter, getParameterAccess, setParameter, triggerParameterChange, triggerParameterStructureChange, triggerParameterUIChange

Constructor Detail

OMEROFindProjectAlgorithm

public OMEROFindProjectAlgorithm(JIPipeNodeInfo info)

OMEROFindProjectAlgorithm

public OMEROFindProjectAlgorithm(OMEROFindProjectAlgorithm other)

Method Detail

runIteration

protected void runIteration(JIPipeDataBatch dataBatch,
                            JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeSimpleIteratingAlgorithm

Runs code on one data row

Specified by:

runIteration in class JIPipeSimpleIteratingAlgorithm

Parameters:

dataBatch - The data interface

progressInfo - the progress info from the run

getProjectNameFilters

public StringQueryExpression getProjectNameFilters()

setProjectNameFilters

public void setProjectNameFilters(StringQueryExpression projectNameFilters)

getKeyValuePairFilters

public StringMapQueryExpression getKeyValuePairFilters()

setKeyValuePairFilters

public void setKeyValuePairFilters(StringMapQueryExpression keyValuePairFilters)

getCredentials

public OMEROCredentials getCredentials()

reportValidity

public void reportValidity(JIPipeIssueReport report)

Description copied from interface: JIPipeValidatable

Generates a validity report

Specified by:

reportValidity in interface JIPipeValidatable

Overrides:

reportValidity in class JIPipeSimpleIteratingAlgorithm

Parameters:

report - the report to be added to

getProjectNameAnnotation

public OptionalAnnotationNameParameter getProjectNameAnnotation()

setProjectNameAnnotation

public void setProjectNameAnnotation(OptionalAnnotationNameParameter projectNameAnnotation)

isAddKeyValuePairsAsAnnotations

public boolean isAddKeyValuePairsAsAnnotations()

setAddKeyValuePairsAsAnnotations

public void setAddKeyValuePairsAsAnnotations(boolean addKeyValuePairsAsAnnotations)

getTagFilters

public StringMapQueryExpression getTagFilters()

setTagFilters

public void setTagFilters(StringMapQueryExpression tagFilters)

getTagAnnotation

public OptionalAnnotationNameParameter getTagAnnotation()

setTagAnnotation

public void setTagAnnotation(OptionalAnnotationNameParameter tagAnnotation)