| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final String |
SOURCE_USER |
"User" |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final int |
CURRENT_PROJECT_FORMAT_VERSION |
1 |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final String |
ID |
"default" |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final String |
ID |
"default" |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final String |
LOCATION_KEY_NODE_DISPLAY_NAME |
"jipipe:node:display-name" |
public static final String |
LOCATION_KEY_NODE_NAME |
"jipipe:node:name" |
public static final String |
LOCATION_KEY_SLOT_DISPLAY_NAME |
"jipipe:slot:display-name" |
public static final String |
LOCATION_KEY_SLOT_IO |
"jipipe:slot:io" |
public static final String |
LOCATION_KEY_SLOT_NAME |
"jipipe:slot:name" |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final String |
SLOT_PARAMETERS |
"{Parameters}" |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final int |
FORCE_REFLECTION |
2 |
public static final int |
IGNORE_CUSTOM |
4 |
public static final int |
IGNORE_REFLECTION |
1 |
public static final int |
NONE |
0 |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final String |
SLOT_FORMS |
"Forms" |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final String |
RESOURCE_BASE_PATH |
"/org/hkijena/jipipe/extensions/ijweka" |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final String |
ALL_DESCRIPTIONS |
"<p><strong>Area</strong><br/><br/>Measures ROI areas. Area of selection in square pixels. Area is in calibrated units if available. They are stored as \'Area\'.</p><br/><p><strong>Area fraction</strong><br/><br/>The percentage of non-zero pixels. Values are stored in \'%Area\'</p><br/><p><strong>Bounding rectangle</strong><br/><br/>The smallest rectangle enclosing the selection. Uses the headings BX, BY, Width and Height, where BX and BY are the coordinates of the upper left corner of the rectangle.</p><br/><p><strong>Center of mass</strong><br/><br/>Measures the brightness-weighted average of the x and y coordinates all pixels in the image or selection. They are stored into \'XM\' and \'YM\' respectively. These coordinates are the first order spatial moments.</p><br/><p><strong>Centroid</strong><br/><br/>The center point of the selection. This is the average of the x and y coordinates of all of the pixels in the image or selection. Values are stored in \'X\' and \'Y\' respectively.</p><br/><p><strong>Feret\'s diameter</strong><br/><br/>The longest distance between any two points along the selection boundary, also known as maximum caliper. Uses the Feret heading. FeretAngle (0-180 degrees) is the angle between the Feret\'s diameter and a line parallel to the x-axis of the image. MinFeret is the minimum caliper diameter. The starting coordinates of the Feret\'s diameter (FeretX and FeretY) are also generated.</p><br/><p><strong>Fit ellipse</strong><br/><br/>Fit an ellipse to the selection. Uses the headings Major, Minor and Angle. Major and Minor are the primary and seconday axis of the best fitting ellipse. Angle (0-180 degrees) is the angle between the primary axis and a line parallel to the x-axis of the image. The coordinates of the center of the ellipse are displayed as X and Y if Centroid is checked. Note that ImageJ cannot calculate the major and minor axis lengths if Pixel Aspect Ratio is not 1.0.</p><br/><p><strong>Integrated density</strong><br/><br/>Calculates and displays two values: \'IntDen\' (the product of Area and Mean Gray Value) and \'RawIntDen\' (the sum of the values of the pixels in the image or selection).</p><br/><p><strong>Min & max pixel values</strong><br/><br/>Measures the minimum and maximum greyscale pixel values. They are stored into \'Min\' and \'Max\' respectively.</p><br/><p><strong>Perimeter</strong><br/><br/>The length of the outside boundary of the selection. Values are stored in \'Perim.\'</p><br/><p><strong>Pixel values kurtosis</strong><br/><br/>The fourth order moment about the greyscale pixel value mean. Values are stored in \'Kurt\'</p><br/><p><strong>Pixel values mean</strong><br/><br/>Mean of grayscale pixel values. Values are stored in \'Mean\'.</p><br/><p><strong>Pixel values median</strong><br/><br/>The median value of the pixels in the image or selection. Values are stored in \'Median\'</p><br/><p><strong>Pixel values modal</strong><br/><br/>Most frequently occurring gray value within the selection. Values are stored in \'Mode\'.</p><br/><p><strong>Pixel values skewness</strong><br/><br/>The third order moment about the mean of grayscale pixel values. Values are stored in \'Skew\'.</p><br/><p><strong>Pixel values standard deviation</strong><br/><br/>Measures the standard deviation of greyscale pixel values. They are stored as \'StdDev\'.</p><br/><p><strong>Shape descriptors</strong><br/><br/>Measures the following shape descriptors:<br/><ul><li>Circ. (circularity): 4\u03c0*area/perimeter^2. A value of 1.0 indicates a perfect circle. As the value approaches 0.0, it indicates an increasingly elongated shape. Values may not be valid for very small particles.</li><li>AR (aspect ratio): major_axis/minor_axis. To show major and minor axis enable \'Fit ellipse\'</li><li>Round (roundness): 4*area/(\u03c0*major_axis^2), or the inverse of the aspect ratio.</li><li>Solidity: area/convex area.</li></ul></p><br/><p><strong>Stack position</strong><br/><br/>The current position (channel, slice and frame) in the stack or hyperstack. Uses the headings \'Ch\', \'Slice\' and \'Frame\'. Please note that JIPipe algorithms sometimes handle stacks differently compared to their ImageJ equivalents. We recommend to not rely on this measurement.</p><br/>" |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final String |
ID |
"org.hkijena.jipipe:omero" |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final String |
CATEGORY_3D |
"3D" |
public static final String |
CATEGORY_ANALYSIS |
"Analysis" |
public static final String |
CATEGORY_ANNOTATION |
"Annotation" |
public static final String |
CATEGORY_AUTOMATION |
"Automation" |
public static final String |
CATEGORY_BENCHMARK |
"Benchmark" |
public static final String |
CATEGORY_BINARY |
"Binary" |
public static final String |
CATEGORY_CELLPROFILER |
"CellProfiler" |
public static final String |
CATEGORY_CLASSIFICATION |
"Classification" |
public static final String |
CATEGORY_COLOCALIZATION |
"Colocalization" |
public static final String |
CATEGORY_COLOR_PROCESSING |
"Color Processing" |
public static final String |
CATEGORY_COMPLEXITY |
"Complexity" |
public static final String |
CATEGORY_COOKBOOK |
"Cookbook" |
public static final String |
CATEGORY_DATA_PROCESSING |
"Data processing" |
public static final String |
CATEGORY_DECONVOLUTION |
"Deconvolution" |
public static final String |
CATEGORY_DEEP_LEARNING |
"Deep-Learning" |
public static final String |
CATEGORY_DENOISING |
"Denoising" |
public static final String |
CATEGORY_DEVELOPMENT |
"Development" |
public static final String |
CATEGORY_DIGITAL_VOLUME_FLATTENING |
"Digital Volume Flattening" |
public static final String |
CATEGORY_DIGITAL_VOLUME_UNROLLING |
"Digital Volume Unrolling" |
public static final String |
CATEGORY_ENTROPY |
"Entropy" |
public static final String |
CATEGORY_EXAMPLE_DATA |
"Example Data" |
public static final String |
CATEGORY_FEATURE_EXTRACTION |
"Feature Extraction" |
public static final String |
CATEGORY_FIJI |
"Fiji" |
public static final String |
CATEGORY_FILTERING |
"Filtering" |
public static final String |
CATEGORY_FRACTAL_DIMENSION |
"Fractal dimension" |
public static final String |
CATEGORY_GPU |
"GPU" |
public static final String |
CATEGORY_GUT |
"Gut" |
public static final String |
CATEGORY_HELP |
"Help" |
public static final String |
CATEGORY_IMAGE_ANALYSIS |
"Image analysis" |
public static final String |
CATEGORY_IMAGE_ANNOTATION |
"Image Annotation" |
public static final String |
CATEGORY_IMAGE_SCIENCE |
"ImageScience" |
public static final String |
CATEGORY_IMAGEJ2 |
"ImageJ2" |
public static final String |
CATEGORY_IMGLIB |
"ImgLib" |
public static final String |
CATEGORY_IMPORT_EXPORT |
"Import-Export" |
public static final String |
CATEGORY_INTEGRAL_IMAGE |
"Integral Image" |
public static final String |
CATEGORY_INTERACTIVE |
"Interactive" |
public static final String |
CATEGORY_LIFETIME |
"Lifetime" |
public static final String |
CATEGORY_LISP |
"Lisp" |
public static final String |
CATEGORY_MACHINE_LEARNING |
"Machine Learning" |
public static final String |
CATEGORY_MATHEMATICAL_MORPHOLOGY |
"Mathematical Morphology" |
public static final String |
CATEGORY_MATLAB |
"MATLAB" |
public static final String |
CATEGORY_MICROSCOPY |
"Microscopy" |
public static final String |
CATEGORY_MICROTUBULES |
"Microtubules" |
public static final String |
CATEGORY_MONTAGE |
"Montage" |
public static final String |
CATEGORY_NEUROANATOMY |
"Neuroanatomy" |
public static final String |
CATEGORY_NEURON |
"Neuron" |
public static final String |
CATEGORY_NOISE |
"Noise" |
public static final String |
CATEGORY_OBJECT_DETECTION |
"Object Detection" |
public static final String |
CATEGORY_OME |
"OME" |
public static final String |
CATEGORY_OPS |
"Ops" |
public static final String |
CATEGORY_OPTIC_FLOW |
"Optic Flow" |
public static final String |
CATEGORY_PARTICLE_ANALYSIS |
"Particle Analysis" |
public static final String |
CATEGORY_PATTERN_RECOGNITION |
"Pattern Recognition" |
public static final String |
CATEGORY_PERFUSION |
"Perfusion" |
public static final String |
CATEGORY_PHOTOGRAMMETRY |
"Photogrammetry" |
public static final String |
CATEGORY_PHOTOGRAPHY |
"Photography" |
public static final String |
CATEGORY_PLOTTING |
"Plotting" |
public static final String |
CATEGORY_PROJECTION |
"Projection" |
public static final String |
CATEGORY_REGISTRATION |
"Registration" |
public static final String |
CATEGORY_SCIJAVA |
"SciJava" |
public static final String |
CATEGORY_SCRIPTING |
"Scripting" |
public static final String |
CATEGORY_SEGMENTATION |
"Segmentation" |
public static final String |
CATEGORY_SKELETON |
"Skeleton" |
public static final String |
CATEGORY_SKELETONIZATION |
"Skeletonization" |
public static final String |
CATEGORY_STACKS |
"Stacks" |
public static final String |
CATEGORY_STATISTICS |
"Statistics" |
public static final String |
CATEGORY_STITCHING |
"Stitching" |
public static final String |
CATEGORY_SUPER_RESOLUTION |
"Super-resolution" |
public static final String |
CATEGORY_TIME_SIGNAL_ANALYSIS |
"Time signal analysis" |
public static final String |
CATEGORY_TISSUE |
"Tissue" |
public static final String |
CATEGORY_TRACKEM2 |
"TrakEM2" |
public static final String |
CATEGORY_TRACKING |
"Tracking" |
public static final String |
CATEGORY_TRANSFORM |
"Transform" |
public static final String |
CATEGORY_TUTORIAL |
"Tutorial" |
public static final String |
CATEGORY_TUTORIALS |
"Tutorials" |
public static final String |
CATEGORY_UNCATEGORIZED |
"Uncategorized" |
public static final String |
CATEGORY_USER_INTERFACE |
"User Interface" |
public static final String |
CATEGORY_VISUALIZATION |
"Visualization" |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final String |
UNIT_NO_UNIT |
"" |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final int |
PARAM_BOTTOM |
8 |
public static final int |
PARAM_HEIGHT |
32 |
public static final int |
PARAM_LEFT |
1 |
public static final int |
PARAM_RIGHT |
4 |
public static final int |
PARAM_TOP |
2 |
public static final int |
PARAM_WIDTH |
16 |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final int |
PARAM_BOTTOM |
8 |
public static final int |
PARAM_HEIGHT |
32 |
public static final int |
PARAM_LEFT |
1 |
public static final int |
PARAM_RIGHT |
4 |
public static final int |
PARAM_TOP |
2 |
public static final int |
PARAM_WIDTH |
16 |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final String |
ENVIRONMENT_ID |
"jipipe-python-adapter-library" |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final String |
ENVIRONMENT_ID |
"python" |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final String |
ENVIRONMENT_ID |
"r" |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final int |
EOL_COMMENT |
2 |
public static final int |
STRING |
1 |
public static final int |
YYEOF |
-1 |
public static final int |
YYINITIAL |
0 |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final String |
ID |
"auto-save" |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final String |
ID |
"data-exporter" |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final String |
ID |
"default-cache-displays" |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final String |
ID |
"default-result-importers" |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final String |
ID |
"downloads" |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final String |
ID |
"extensions" |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final String |
ID |
"runtime" |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final String |
TAB_APPLICATION_SETTINGS |
"APPLICATION_SETTINGS" |
public static final String |
TAB_COMPARTMENT_EDITOR |
"COMPARTMENT_EDITOR" |
public static final String |
TAB_INTRODUCTION |
"INTRODUCTION" |
public static final String |
TAB_LICENSE |
"LICENSE" |
public static final String |
TAB_LOG |
"LOG" |
public static final String |
TAB_NOTIFICATIONS |
"NOTIFICATIONS" |
public static final String |
TAB_PLUGIN_MANAGER |
"PLUGIN_MANAGER" |
public static final String |
TAB_PLUGIN_VALIDITY_CHECK |
"PLUGIN_VALIDITY_CHECK" |
public static final String |
TAB_PROJECT_OVERVIEW |
"PROJECT_OVERVIEW" |
public static final String |
TAB_PROJECT_SETTINGS |
"PROJECT_SETTINGS" |
public static final String |
TAB_VALIDITY_CHECK |
"VALIDITY_CHECK" |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final String |
SELECT_ALL_OUTPUTS |
"" |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final String |
HELP_URL |
"https://www.jipipe.org/documentation/imagej-integration/#running-a-single-node" |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final int |
NONE |
0 |
public static final int |
WITH_PIN_TOOLBAR |
4 |
public static final int |
WITH_RIBBON |
1 |
public static final int |
WITH_SIDEBAR |
8 |
public static final int |
WITH_TOOLBAR |
2 |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final int |
DOCUMENTATION_BELOW |
4 |
public static final int |
DOCUMENTATION_NO_UI |
16 |
public static final int |
NONE |
0 |
public static final int |
WITH_DOCUMENTATION |
1 |
public static final int |
WITH_SCROLLING |
2 |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final int |
NONE |
0 |
public static final int |
WITH_DIALOG_EDITOR_BUTTON |
2 |
public static final int |
WITH_SCROLL_BAR |
1 |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final int |
ANIMATION_DELAY |
80 |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final String |
DOWNLOAD_URL |
"https://github.com/applied-systems-biology/jipipe/releases/download/current/jipipe_offline_documentation.zip" |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final int |
FLAGS_NONE |
0 |
public static final int |
FLAGS_SPLIT_PANE_RATIO_1_1 |
2 |
public static final int |
FLAGS_SPLIT_PANE_SWITCH_CONTENT |
4 |
public static final int |
FLAGS_SPLIT_PANE_VERTICAL |
1 |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final int |
CONTROL_STYLE_CHECKBOX |
4 |
public static final int |
CONTROL_STYLE_LIST |
2 |
public static final int |
CONTROL_STYLE_PANEL |
1 |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final int |
DEFAULT_DIALOG_FLAGS |
515 |
public static final int |
FORCE_TRAVERSE |
256 |
public static final int |
NO_EMPTY_GROUP_HEADERS |
128 |
public static final int |
NO_GROUP_HEADERS |
64 |
public static final int |
WITH_SEARCH_BAR |
512 |
public static final int |
WITHOUT_COLLAPSE |
2048 |
public static final int |
WITHOUT_LABEL_SEPARATION |
1024 |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final String |
METADATA_KEY |
"org.hkijena.jipipe:pipeline-parameters" |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final int |
LEFT_RIGHT |
1 |
public static final double |
RATIO_1_TO_1 |
0.5 |
public static final double |
RATIO_1_TO_3 |
0.33 |
public static final double |
RATIO_3_TO_1 |
0.66 |
public static final int |
TOP_BOTTOM |
0 |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final String |
PARSE_COLOR_DESCRIPTION |
"The color can be a common color name (e.g. \'red\'), a hex color (e.g. \'#ff00ff\'), or an RGB color (e.g. \'0,128,255\')." |
| Modifier and Type | Constant Field | Value |
|---|---|---|
public static final String |
RESOURCE_BASE_PATH |
"/org/hkijena/jipipe" |
Copyright © 2020–2022 Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute (HKI). All rights reserved.