org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Class ExtractImageInRoiAlgorithm

java.lang.Object

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm

All Implemented Interfaces:

JIPipeValidatable, JIPipeAdaptiveParametersAlgorithm, JIPipeDataBatchAlgorithm, JIPipeParallelizedAlgorithm, JIPipeParameterCollection

public class ExtractImageInRoiAlgorithm
extends JIPipeIteratingAlgorithm

Nested Class Summary

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

JIPipeAlgorithm.StateSerializer

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterUIChangedEvent

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
ExtractImageInRoiAlgorithm(ExtractImageInRoiAlgorithm other)
ExtractImageInRoiAlgorithm(JIPipeNodeInfo info)

Method Summary

Modifier and Type	Method and Description
OptionalAnnotationNameParameter	getAnnotationCLocation()
OptionalAnnotationNameParameter	getAnnotationTLocation()
OptionalAnnotationNameParameter	getAnnotationXLocation()
OptionalAnnotationNameParameter	getAnnotationYLocation()
OptionalAnnotationNameParameter	getAnnotationZLocation()
boolean	isIgnoreC()
boolean	isIgnoreT()
boolean	isIgnoreZ()
protected void	runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo) Runs code on one data row
void	setAnnotationCLocation(OptionalAnnotationNameParameter annotationCLocation)
void	setAnnotationTLocation(OptionalAnnotationNameParameter annotationTLocation)
void	setAnnotationXLocation(OptionalAnnotationNameParameter annotationXLocation)
void	setAnnotationYLocation(OptionalAnnotationNameParameter annotationYLocation)
void	setAnnotationZLocation(OptionalAnnotationNameParameter annotationZLocation)
void	setIgnoreC(boolean ignoreC)
void	setIgnoreT(boolean ignoreT)
void	setIgnoreZ(boolean ignoreZ)

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

generateDataBatchesDryRun, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getParallelizationBatchSize, isParallelizationEnabled, isParameterUIVisible, isParameterUIVisible, runParameterSet, runPassThrough, setParallelizationEnabled, supportsParallelization

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, run

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, canPassThrough, getStateId, getThreadPool, isEnabled, isPassThrough, isPostprocessor, isPreprocessor, loadExample, reportValidity, runPassThrough, setEnabled, setPassThrough, setThreadPool

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, fromJson, fromJsonNode, getAliasIdInParentGraph, getBaseDirectory, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getDependencies, getDisplayName, getEventBus, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getLocations, getLocationWithin, getName, getNewScratch, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProjectCompartment, getProjectDirectory, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isVisibleIn, onDeserialized, onParameterChanged, onParameterStructureChanged, onParameterUIChanged, onSlotConfigurationChanged, onSlotConnected, onSlotDisconnected, registerSubParameter, renderInputSlots, renderOutputSlots, setAllSlotsVirtual, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setLocations, setLocationWithin, setLocationWithin, setParentGraph, setProjectDirectory, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, toggleSlot, toJson, triggerSlotsChangedEvent, updateGraphNodeSlots, updateSlotInheritance

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

addParameterChangeListener, addParameterChangeListener, getContextActions, getParameter, getParameterAccess, setParameter, triggerParameterChange, triggerParameterStructureChange, triggerParameterUIChange

Constructor Detail

ExtractImageInRoiAlgorithm

public ExtractImageInRoiAlgorithm(JIPipeNodeInfo info)

ExtractImageInRoiAlgorithm

public ExtractImageInRoiAlgorithm(ExtractImageInRoiAlgorithm other)

Method Detail

runIteration

protected void runIteration(JIPipeDataBatch dataBatch,
                            JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeIteratingAlgorithm

Runs code on one data row

Specified by:

runIteration in class JIPipeIteratingAlgorithm

Parameters:

dataBatch - The data interface

progressInfo - the progress info from the run

isIgnoreZ

public boolean isIgnoreZ()

setIgnoreZ

public void setIgnoreZ(boolean ignoreZ)

isIgnoreC

public boolean isIgnoreC()

setIgnoreC

public void setIgnoreC(boolean ignoreC)

isIgnoreT

public boolean isIgnoreT()

setIgnoreT

public void setIgnoreT(boolean ignoreT)

getAnnotationXLocation

public OptionalAnnotationNameParameter getAnnotationXLocation()

setAnnotationXLocation

public void setAnnotationXLocation(OptionalAnnotationNameParameter annotationXLocation)

getAnnotationYLocation

public OptionalAnnotationNameParameter getAnnotationYLocation()

setAnnotationYLocation

public void setAnnotationYLocation(OptionalAnnotationNameParameter annotationYLocation)

getAnnotationZLocation

public OptionalAnnotationNameParameter getAnnotationZLocation()

setAnnotationZLocation

public void setAnnotationZLocation(OptionalAnnotationNameParameter annotationZLocation)

getAnnotationCLocation

public OptionalAnnotationNameParameter getAnnotationCLocation()

setAnnotationCLocation

public void setAnnotationCLocation(OptionalAnnotationNameParameter annotationCLocation)

getAnnotationTLocation

public OptionalAnnotationNameParameter getAnnotationTLocation()

setAnnotationTLocation

public void setAnnotationTLocation(OptionalAnnotationNameParameter annotationTLocation)