org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.annotations

Class RoiPropertiesToAnnotationsAlgorithm

java.lang.Object

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.annotations.RoiPropertiesToAnnotationsAlgorithm

All Implemented Interfaces:

JIPipeValidatable, JIPipeAdaptiveParametersAlgorithm, JIPipeDataBatchAlgorithm, JIPipeParallelizedAlgorithm, JIPipeParameterCollection

public class RoiPropertiesToAnnotationsAlgorithm
extends JIPipeSimpleIteratingAlgorithm

Nested Class Summary

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

JIPipeAlgorithm.StateSerializer

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterUIChangedEvent

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
RoiPropertiesToAnnotationsAlgorithm(JIPipeNodeInfo info)
RoiPropertiesToAnnotationsAlgorithm(RoiPropertiesToAnnotationsAlgorithm other)

Method Summary

Modifier and Type	Method and Description
JIPipeTextAnnotationMergeMode	getAnnotationMergeStrategy()
OptionalAnnotationNameParameter	getCountAnnotation()
OptionalAnnotationNameParameter	getFillColorAnnotation()
OptionalAnnotationNameParameter	getLineColorAnnotation()
OptionalAnnotationNameParameter	getLineWidthAnnotation()
OptionalAnnotationNameParameter	getLocationCAnnotation()
OptionalAnnotationNameParameter	getLocationTAnnotation()
OptionalAnnotationNameParameter	getLocationXAnnotation()
OptionalAnnotationNameParameter	getLocationYAnnotation()
OptionalAnnotationNameParameter	getLocationZAnnotation()
OptionalAnnotationNameParameter	getNameAnnotation()
boolean	isDeduplicate()
boolean	isOnlyFirst()
protected void	runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo) Runs code on one data row
void	setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	setCountAnnotation(OptionalAnnotationNameParameter countAnnotation)
void	setDeduplicate(boolean deduplicate)
void	setFillColorAnnotation(OptionalAnnotationNameParameter fillColorAnnotation)
void	setLineColorAnnotation(OptionalAnnotationNameParameter lineColorAnnotation)
void	setLineWidthAnnotation(OptionalAnnotationNameParameter lineWidthAnnotation)
void	setLocationCAnnotation(OptionalAnnotationNameParameter locationCAnnotation)
void	setLocationTAnnotation(OptionalAnnotationNameParameter locationTAnnotation)
void	setLocationXAnnotation(OptionalAnnotationNameParameter locationXAnnotation)
void	setLocationYAnnotation(OptionalAnnotationNameParameter locationYAnnotation)
void	setLocationZAnnotation(OptionalAnnotationNameParameter locationZAnnotation)
void	setNameAnnotation(OptionalAnnotationNameParameter nameAnnotation)
void	setOnlyFirst(boolean onlyFirst)

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

generateDataBatchesDryRun, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getParallelizationBatchSize, isParallelizationEnabled, isParameterUIVisible, isParameterUIVisible, reportValidity, runParameterSet, runPassThrough, setParallelizationEnabled, supportsParallelization

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, run

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, canPassThrough, getStateId, getThreadPool, isEnabled, isPassThrough, isPostprocessor, isPreprocessor, loadExample, runPassThrough, setEnabled, setPassThrough, setThreadPool

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, fromJson, fromJsonNode, getAliasIdInParentGraph, getBaseDirectory, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getDependencies, getDisplayName, getEventBus, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getLocations, getLocationWithin, getName, getNewScratch, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProjectCompartment, getProjectDirectory, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isVisibleIn, onDeserialized, onParameterChanged, onParameterStructureChanged, onParameterUIChanged, onSlotConfigurationChanged, onSlotConnected, onSlotDisconnected, registerSubParameter, renderInputSlots, renderOutputSlots, setAllSlotsVirtual, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setLocations, setLocationWithin, setLocationWithin, setParentGraph, setProjectDirectory, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, toggleSlot, toJson, triggerSlotsChangedEvent, updateGraphNodeSlots, updateSlotInheritance

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

addParameterChangeListener, addParameterChangeListener, getContextActions, getParameter, getParameterAccess, setParameter, triggerParameterChange, triggerParameterStructureChange, triggerParameterUIChange

Constructor Detail

RoiPropertiesToAnnotationsAlgorithm

public RoiPropertiesToAnnotationsAlgorithm(JIPipeNodeInfo info)

RoiPropertiesToAnnotationsAlgorithm

public RoiPropertiesToAnnotationsAlgorithm(RoiPropertiesToAnnotationsAlgorithm other)

Method Detail

runIteration

protected void runIteration(JIPipeDataBatch dataBatch,
                            JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeSimpleIteratingAlgorithm

Runs code on one data row

Specified by:

runIteration in class JIPipeSimpleIteratingAlgorithm

Parameters:

dataBatch - The data interface

progressInfo - the progress info from the run

getCountAnnotation

public OptionalAnnotationNameParameter getCountAnnotation()

setCountAnnotation

public void setCountAnnotation(OptionalAnnotationNameParameter countAnnotation)

getNameAnnotation

public OptionalAnnotationNameParameter getNameAnnotation()

setNameAnnotation

public void setNameAnnotation(OptionalAnnotationNameParameter nameAnnotation)

getLocationXAnnotation

public OptionalAnnotationNameParameter getLocationXAnnotation()

setLocationXAnnotation

public void setLocationXAnnotation(OptionalAnnotationNameParameter locationXAnnotation)

getLocationYAnnotation

public OptionalAnnotationNameParameter getLocationYAnnotation()

setLocationYAnnotation

public void setLocationYAnnotation(OptionalAnnotationNameParameter locationYAnnotation)

getLocationZAnnotation

public OptionalAnnotationNameParameter getLocationZAnnotation()

setLocationZAnnotation

public void setLocationZAnnotation(OptionalAnnotationNameParameter locationZAnnotation)

getLocationCAnnotation

public OptionalAnnotationNameParameter getLocationCAnnotation()

setLocationCAnnotation

public void setLocationCAnnotation(OptionalAnnotationNameParameter locationCAnnotation)

getLocationTAnnotation

public OptionalAnnotationNameParameter getLocationTAnnotation()

setLocationTAnnotation

public void setLocationTAnnotation(OptionalAnnotationNameParameter locationTAnnotation)

getFillColorAnnotation

public OptionalAnnotationNameParameter getFillColorAnnotation()

setFillColorAnnotation

public void setFillColorAnnotation(OptionalAnnotationNameParameter fillColorAnnotation)

getLineColorAnnotation

public OptionalAnnotationNameParameter getLineColorAnnotation()

setLineColorAnnotation

public void setLineColorAnnotation(OptionalAnnotationNameParameter lineColorAnnotation)

getLineWidthAnnotation

public OptionalAnnotationNameParameter getLineWidthAnnotation()

setLineWidthAnnotation

public void setLineWidthAnnotation(OptionalAnnotationNameParameter lineWidthAnnotation)

getAnnotationMergeStrategy

public JIPipeTextAnnotationMergeMode getAnnotationMergeStrategy()

setAnnotationMergeStrategy

public void setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)

isDeduplicate

public boolean isDeduplicate()

setDeduplicate

public void setDeduplicate(boolean deduplicate)

isOnlyFirst

public boolean isOnlyFirst()

setOnlyFirst

public void setOnlyFirst(boolean onlyFirst)