org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.generate

Class TableToRectangularROIAlgorithm

java.lang.Object

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.generate.TableToRectangularROIAlgorithm

All Implemented Interfaces:

JIPipeValidatable, JIPipeAdaptiveParametersAlgorithm, JIPipeDataBatchAlgorithm, JIPipeParallelizedAlgorithm, JIPipeParameterCollection

public class TableToRectangularROIAlgorithm
extends JIPipeSimpleIteratingAlgorithm

Wrapper around RoiManager

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	TableToRectangularROIAlgorithm.Anchor Available anchors
static class	TableToRectangularROIAlgorithm.Mode

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

JIPipeAlgorithm.StateSerializer

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterUIChangedEvent

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
TableToRectangularROIAlgorithm(JIPipeNodeInfo info) Instantiates a new node type.
TableToRectangularROIAlgorithm(TableToRectangularROIAlgorithm other) Creates a copy

Method Summary

Modifier and Type	Method and Description
TableToRectangularROIAlgorithm.Anchor	getAnchor()
TableColumnSourceExpressionParameter	getColumnC()
TableColumnSourceExpressionParameter	getColumnHeight()
TableColumnSourceExpressionParameter	getColumnT()
TableColumnSourceExpressionParameter	getColumnWidth()
TableColumnSourceExpressionParameter	getColumnX1()
TableColumnSourceExpressionParameter	getColumnX2()
TableColumnSourceExpressionParameter	getColumnY1()
TableColumnSourceExpressionParameter	getColumnY2()
TableColumnSourceExpressionParameter	getColumnZ()
TableToRectangularROIAlgorithm.Mode	getMode()
boolean	isOneBasedPositions()
void	reportValidity(JIPipeIssueReport report) Generates a validity report
protected void	runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo) Runs code on one data row
void	setAnchor(TableToRectangularROIAlgorithm.Anchor anchor)
void	setColumnC(TableColumnSourceExpressionParameter columnC)
void	setColumnHeight(TableColumnSourceExpressionParameter columnHeight)
void	setColumnT(TableColumnSourceExpressionParameter columnT)
void	setColumnWidth(TableColumnSourceExpressionParameter columnWidth)
void	setColumnX1(TableColumnSourceExpressionParameter columnX1)
void	setColumnX2(TableColumnSourceExpressionParameter columnX2)
void	setColumnY1(TableColumnSourceExpressionParameter columnY1)
void	setColumnY2(TableColumnSourceExpressionParameter columnY2)
void	setColumnZ(TableColumnSourceExpressionParameter columnZ)
void	setMode(TableToRectangularROIAlgorithm.Mode mode)
void	setOneBasedPositions(boolean oneBasedPositions)

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

generateDataBatchesDryRun, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getParallelizationBatchSize, isParallelizationEnabled, isParameterUIVisible, isParameterUIVisible, runParameterSet, runPassThrough, setParallelizationEnabled, supportsParallelization

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, run

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, canPassThrough, getStateId, getThreadPool, isEnabled, isPassThrough, isPostprocessor, isPreprocessor, loadExample, runPassThrough, setEnabled, setPassThrough, setThreadPool

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, fromJson, fromJsonNode, getAliasIdInParentGraph, getBaseDirectory, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getDependencies, getDisplayName, getEventBus, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getLocations, getLocationWithin, getName, getNewScratch, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProjectCompartment, getProjectDirectory, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isVisibleIn, onDeserialized, onParameterChanged, onParameterStructureChanged, onParameterUIChanged, onSlotConfigurationChanged, onSlotConnected, onSlotDisconnected, registerSubParameter, renderInputSlots, renderOutputSlots, setAllSlotsVirtual, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setLocations, setLocationWithin, setLocationWithin, setParentGraph, setProjectDirectory, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, toggleSlot, toJson, triggerSlotsChangedEvent, updateGraphNodeSlots, updateSlotInheritance

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

addParameterChangeListener, addParameterChangeListener, getContextActions, getParameter, getParameterAccess, setParameter, triggerParameterChange, triggerParameterStructureChange, triggerParameterUIChange

Constructor Detail

TableToRectangularROIAlgorithm

public TableToRectangularROIAlgorithm(JIPipeNodeInfo info)

Instantiates a new node type.

Parameters:

info - the info

TableToRectangularROIAlgorithm

public TableToRectangularROIAlgorithm(TableToRectangularROIAlgorithm other)

Creates a copy

Parameters:

other - the original

Method Detail

reportValidity

public void reportValidity(JIPipeIssueReport report)

Description copied from interface: JIPipeValidatable

Generates a validity report

Specified by:

reportValidity in interface JIPipeValidatable

Overrides:

reportValidity in class JIPipeSimpleIteratingAlgorithm

Parameters:

report - the report to be added to

runIteration

protected void runIteration(JIPipeDataBatch dataBatch,
                            JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeSimpleIteratingAlgorithm

Runs code on one data row

Specified by:

runIteration in class JIPipeSimpleIteratingAlgorithm

Parameters:

dataBatch - The data interface

progressInfo - the progress info from the run

getColumnX1

public TableColumnSourceExpressionParameter getColumnX1()

setColumnX1

public void setColumnX1(TableColumnSourceExpressionParameter columnX1)

getColumnY1

public TableColumnSourceExpressionParameter getColumnY1()

setColumnY1

public void setColumnY1(TableColumnSourceExpressionParameter columnY1)

getColumnX2

public TableColumnSourceExpressionParameter getColumnX2()

setColumnX2

public void setColumnX2(TableColumnSourceExpressionParameter columnX2)

getColumnY2

public TableColumnSourceExpressionParameter getColumnY2()

setColumnY2

public void setColumnY2(TableColumnSourceExpressionParameter columnY2)

getColumnWidth

public TableColumnSourceExpressionParameter getColumnWidth()

setColumnWidth

public void setColumnWidth(TableColumnSourceExpressionParameter columnWidth)

getColumnHeight

public TableColumnSourceExpressionParameter getColumnHeight()

setColumnHeight

public void setColumnHeight(TableColumnSourceExpressionParameter columnHeight)

getAnchor

public TableToRectangularROIAlgorithm.Anchor getAnchor()

setAnchor

public void setAnchor(TableToRectangularROIAlgorithm.Anchor anchor)

getMode

public TableToRectangularROIAlgorithm.Mode getMode()

setMode

public void setMode(TableToRectangularROIAlgorithm.Mode mode)

getColumnZ

public TableColumnSourceExpressionParameter getColumnZ()

setColumnZ

public void setColumnZ(TableColumnSourceExpressionParameter columnZ)

getColumnC

public TableColumnSourceExpressionParameter getColumnC()

setColumnC

public void setColumnC(TableColumnSourceExpressionParameter columnC)

getColumnT

public TableColumnSourceExpressionParameter getColumnT()

setColumnT

public void setColumnT(TableColumnSourceExpressionParameter columnT)

isOneBasedPositions

public boolean isOneBasedPositions()

setOneBasedPositions

public void setOneBasedPositions(boolean oneBasedPositions)