org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.generate

Class TableToCircularROIAlgorithm

java.lang.Object

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.generate.TableToCircularROIAlgorithm

All Implemented Interfaces:

JIPipeValidatable, JIPipeAdaptiveParametersAlgorithm, JIPipeDataBatchAlgorithm, JIPipeParallelizedAlgorithm, JIPipeParameterCollection

public class TableToCircularROIAlgorithm
extends JIPipeSimpleIteratingAlgorithm

Wrapper around RoiManager

Nested Class Summary

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

JIPipeAlgorithm.StateSerializer

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterUIChangedEvent

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
TableToCircularROIAlgorithm(JIPipeNodeInfo info) Instantiates a new node type.
TableToCircularROIAlgorithm(TableToCircularROIAlgorithm other) Creates a copy

Method Summary

Modifier and Type	Method and Description
TableColumnSourceExpressionParameter	getColumnC()
TableColumnSourceExpressionParameter	getColumnRadius()
TableColumnSourceExpressionParameter	getColumnT()
TableColumnSourceExpressionParameter	getColumnX1()
TableColumnSourceExpressionParameter	getColumnY1()
TableColumnSourceExpressionParameter	getColumnZ()
boolean	isOneBasedPositions()
protected void	runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo) Runs code on one data row
void	setColumnC(TableColumnSourceExpressionParameter columnC)
void	setColumnRadius(TableColumnSourceExpressionParameter columnRadius)
void	setColumnT(TableColumnSourceExpressionParameter columnT)
void	setColumnX1(TableColumnSourceExpressionParameter columnX1)
void	setColumnY1(TableColumnSourceExpressionParameter columnY1)
void	setColumnZ(TableColumnSourceExpressionParameter columnZ)
void	setOneBasedPositions(boolean oneBasedPositions)

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

generateDataBatchesDryRun, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getParallelizationBatchSize, isParallelizationEnabled, isParameterUIVisible, isParameterUIVisible, reportValidity, runParameterSet, runPassThrough, setParallelizationEnabled, supportsParallelization

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, run

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, canPassThrough, getStateId, getThreadPool, isEnabled, isPassThrough, isPostprocessor, isPreprocessor, loadExample, runPassThrough, setEnabled, setPassThrough, setThreadPool

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, fromJson, fromJsonNode, getAliasIdInParentGraph, getBaseDirectory, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getDependencies, getDisplayName, getEventBus, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getLocations, getLocationWithin, getName, getNewScratch, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProjectCompartment, getProjectDirectory, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isVisibleIn, onDeserialized, onParameterChanged, onParameterStructureChanged, onParameterUIChanged, onSlotConfigurationChanged, onSlotConnected, onSlotDisconnected, registerSubParameter, renderInputSlots, renderOutputSlots, setAllSlotsVirtual, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setLocations, setLocationWithin, setLocationWithin, setParentGraph, setProjectDirectory, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, toggleSlot, toJson, triggerSlotsChangedEvent, updateGraphNodeSlots, updateSlotInheritance

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

addParameterChangeListener, addParameterChangeListener, getContextActions, getParameter, getParameterAccess, setParameter, triggerParameterChange, triggerParameterStructureChange, triggerParameterUIChange

Constructor Detail

TableToCircularROIAlgorithm

public TableToCircularROIAlgorithm(JIPipeNodeInfo info)

Instantiates a new node type.

Parameters:

info - the info

TableToCircularROIAlgorithm

public TableToCircularROIAlgorithm(TableToCircularROIAlgorithm other)

Creates a copy

Parameters:

other - the original

Method Detail

runIteration

protected void runIteration(JIPipeDataBatch dataBatch,
                            JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeSimpleIteratingAlgorithm

Runs code on one data row

Specified by:

runIteration in class JIPipeSimpleIteratingAlgorithm

Parameters:

dataBatch - The data interface

progressInfo - the progress info from the run

getColumnX1

public TableColumnSourceExpressionParameter getColumnX1()

setColumnX1

public void setColumnX1(TableColumnSourceExpressionParameter columnX1)

getColumnY1

public TableColumnSourceExpressionParameter getColumnY1()

setColumnY1

public void setColumnY1(TableColumnSourceExpressionParameter columnY1)

getColumnRadius

public TableColumnSourceExpressionParameter getColumnRadius()

setColumnRadius

public void setColumnRadius(TableColumnSourceExpressionParameter columnRadius)

getColumnZ

public TableColumnSourceExpressionParameter getColumnZ()

setColumnZ

public void setColumnZ(TableColumnSourceExpressionParameter columnZ)

getColumnC

public TableColumnSourceExpressionParameter getColumnC()

setColumnC

public void setColumnC(TableColumnSourceExpressionParameter columnC)

getColumnT

public TableColumnSourceExpressionParameter getColumnT()

setColumnT

public void setColumnT(TableColumnSourceExpressionParameter columnT)

isOneBasedPositions

public boolean isOneBasedPositions()

setOneBasedPositions

public void setOneBasedPositions(boolean oneBasedPositions)