org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics

Class KeyValueThresholdPartitionAveragesGenerator

java.lang.Object

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.KeyValueThresholdPartitionAveragesGenerator

All Implemented Interfaces:

JIPipeValidatable, JIPipeAdaptiveParametersAlgorithm, JIPipeDataBatchAlgorithm, JIPipeParallelizedAlgorithm, JIPipeParameterCollection

public class KeyValueThresholdPartitionAveragesGenerator
extends JIPipeIteratingAlgorithm

Nested Class Summary

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

JIPipeAlgorithm.StateSerializer

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterUIChangedEvent

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
KeyValueThresholdPartitionAveragesGenerator(JIPipeNodeInfo info)
KeyValueThresholdPartitionAveragesGenerator(KeyValueThresholdPartitionAveragesGenerator other)

Method Summary

Modifier and Type	Method and Description
OptionalStringParameter	getClass0CountColumnName()
OptionalStringParameter	getClass0MeanColumnName()
OptionalStringParameter	getClass0SumColumnName()
OptionalStringParameter	getClass1CountColumnName()
OptionalStringParameter	getClass1MeanColumnName()
OptionalStringParameter	getClass1SumColumnName()
OptionalStringParameter	getKeyColumnName()
ImageROITargetArea	getSourceArea()
protected void	runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo) Runs code on one data row
void	setClass0CountColumnName(OptionalStringParameter class0CountColumnName)
void	setClass0MeanColumnName(OptionalStringParameter class0MeanColumnName)
void	setClass0SumColumnName(OptionalStringParameter class0SumColumnName)
void	setClass1CountColumnName(OptionalStringParameter class1CountColumnName)
void	setClass1MeanColumnName(OptionalStringParameter class1MeanColumnName)
void	setClass1SumColumnName(OptionalStringParameter class1SumColumnName)
void	setKeyColumnName(OptionalStringParameter keyColumnName)
void	setSourceArea(ImageROITargetArea sourceArea)

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

generateDataBatchesDryRun, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getParallelizationBatchSize, isParallelizationEnabled, isParameterUIVisible, isParameterUIVisible, runParameterSet, runPassThrough, setParallelizationEnabled, supportsParallelization

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, run

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, canPassThrough, getStateId, getThreadPool, isEnabled, isPassThrough, isPostprocessor, isPreprocessor, loadExample, reportValidity, runPassThrough, setEnabled, setPassThrough, setThreadPool

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, fromJson, fromJsonNode, getAliasIdInParentGraph, getBaseDirectory, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getDependencies, getDisplayName, getEventBus, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getLocations, getLocationWithin, getName, getNewScratch, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProjectCompartment, getProjectDirectory, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isVisibleIn, onDeserialized, onParameterChanged, onParameterStructureChanged, onParameterUIChanged, onSlotConfigurationChanged, onSlotConnected, onSlotDisconnected, registerSubParameter, renderInputSlots, renderOutputSlots, setAllSlotsVirtual, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setLocations, setLocationWithin, setLocationWithin, setParentGraph, setProjectDirectory, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, toggleSlot, toJson, triggerSlotsChangedEvent, updateGraphNodeSlots, updateSlotInheritance

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

addParameterChangeListener, addParameterChangeListener, getContextActions, getParameter, getParameterAccess, setParameter, triggerParameterChange, triggerParameterStructureChange, triggerParameterUIChange

Constructor Detail

KeyValueThresholdPartitionAveragesGenerator

public KeyValueThresholdPartitionAveragesGenerator(JIPipeNodeInfo info)

KeyValueThresholdPartitionAveragesGenerator

public KeyValueThresholdPartitionAveragesGenerator(KeyValueThresholdPartitionAveragesGenerator other)

Method Detail

runIteration

protected void runIteration(JIPipeDataBatch dataBatch,
                            JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeIteratingAlgorithm

Runs code on one data row

Specified by:

runIteration in class JIPipeIteratingAlgorithm

Parameters:

dataBatch - The data interface

progressInfo - the progress info from the run

getSourceArea

public ImageROITargetArea getSourceArea()

setSourceArea

public void setSourceArea(ImageROITargetArea sourceArea)

getKeyColumnName

public OptionalStringParameter getKeyColumnName()

setKeyColumnName

public void setKeyColumnName(OptionalStringParameter keyColumnName)

getClass0CountColumnName

public OptionalStringParameter getClass0CountColumnName()

setClass0CountColumnName

public void setClass0CountColumnName(OptionalStringParameter class0CountColumnName)

getClass0SumColumnName

public OptionalStringParameter getClass0SumColumnName()

setClass0SumColumnName

public void setClass0SumColumnName(OptionalStringParameter class0SumColumnName)

getClass0MeanColumnName

public OptionalStringParameter getClass0MeanColumnName()

setClass0MeanColumnName

public void setClass0MeanColumnName(OptionalStringParameter class0MeanColumnName)

getClass1CountColumnName

public OptionalStringParameter getClass1CountColumnName()

setClass1CountColumnName

public void setClass1CountColumnName(OptionalStringParameter class1CountColumnName)

getClass1SumColumnName

public OptionalStringParameter getClass1SumColumnName()

setClass1SumColumnName

public void setClass1SumColumnName(OptionalStringParameter class1SumColumnName)

getClass1MeanColumnName

public OptionalStringParameter getClass1MeanColumnName()

setClass1MeanColumnName

public void setClass1MeanColumnName(OptionalStringParameter class1MeanColumnName)