public class UploadOMEROImageAlgorithm extends JIPipeMergingAlgorithm
JIPipeAlgorithm.StateSerializer
JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.Serializer
JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterUIChangedEvent
SLOT_PARAMETERS
Constructor and Description |
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UploadOMEROImageAlgorithm(JIPipeNodeInfo info) |
UploadOMEROImageAlgorithm(UploadOMEROImageAlgorithm other) |
Modifier and Type | Method and Description |
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OMEROCredentials |
getCredentials() |
JIPipeDataByMetadataExporter |
getExporter() |
AnnotationQueryExpression |
getUploadedAnnotationsFilter() |
boolean |
isUploadAnnotations() |
protected void |
runIteration(JIPipeMergingDataBatch dataBatch,
JIPipeProgressInfo progressInfo)
Runs code on one data row
|
void |
runParameterSet(JIPipeProgressInfo progressInfo,
List<JIPipeTextAnnotation> parameterAnnotations)
Runs a parameter set iteration
|
void |
setUploadAnnotations(boolean uploadAnnotations) |
void |
setUploadedAnnotationsFilter(AnnotationQueryExpression uploadedAnnotationsFilter) |
boolean |
supportsParallelization()
Indicates to the algorithm base implementation if parallelization is supported.
|
generateDataBatchesDryRun, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getIgnoredAnnotationColumns, getParallelizationBatchSize, isParallelizationEnabled, isParameterUIVisible, isParameterUIVisible, runPassThrough, setParallelizationEnabled
getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, run
canAutoPassThrough, canPassThrough, getStateId, getThreadPool, isEnabled, isPassThrough, isPostprocessor, isPreprocessor, loadExample, reportValidity, runPassThrough, setEnabled, setPassThrough, setThreadPool
canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, fromJson, fromJsonNode, getAliasIdInParentGraph, getBaseDirectory, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getDependencies, getDisplayName, getEventBus, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getLocations, getLocationWithin, getName, getNewScratch, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProjectCompartment, getProjectDirectory, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isVisibleIn, onDeserialized, onParameterChanged, onParameterStructureChanged, onParameterUIChanged, onSlotConfigurationChanged, onSlotConnected, onSlotDisconnected, registerSubParameter, renderInputSlots, renderOutputSlots, setAllSlotsVirtual, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setLocations, setLocationWithin, setLocationWithin, setParentGraph, setProjectDirectory, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, toggleSlot, toJson, triggerSlotsChangedEvent, updateGraphNodeSlots, updateSlotInheritance
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
generateValidityReport
addParameterChangeListener, addParameterChangeListener, getContextActions, getParameter, getParameterAccess, setParameter, triggerParameterChange, triggerParameterStructureChange, triggerParameterUIChange
public UploadOMEROImageAlgorithm(JIPipeNodeInfo info)
public UploadOMEROImageAlgorithm(UploadOMEROImageAlgorithm other)
public void runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
JIPipeParameterSlotAlgorithm
runParameterSet
in class JIPipeMergingAlgorithm
progressInfo
- progress info from the runparameterAnnotations
- parameter annotationsprotected void runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo)
JIPipeMergingAlgorithm
runIteration
in class JIPipeMergingAlgorithm
dataBatch
- The data interfaceprogressInfo
- the progress from the runpublic OMEROCredentials getCredentials()
public JIPipeDataByMetadataExporter getExporter()
public boolean isUploadAnnotations()
public void setUploadAnnotations(boolean uploadAnnotations)
public AnnotationQueryExpression getUploadedAnnotationsFilter()
public void setUploadedAnnotationsFilter(AnnotationQueryExpression uploadedAnnotationsFilter)
public boolean supportsParallelization()
JIPipeParallelizedAlgorithm
supportsParallelization
in interface JIPipeParallelizedAlgorithm
supportsParallelization
in class JIPipeMergingAlgorithm
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