org.hkijena.jipipe.extensions.cellpose

Class CellposeUtils

java.lang.Object

org.hkijena.jipipe.extensions.cellpose.CellposeUtils

public class CellposeUtils
extends Object

Method Summary

Modifier and Type	Method and Description
static ROIListData	cellposeROIJsonToImageJ(Path file) Converts ROI in a custom Json format to ROIListData
static ROIListData	cellposeROIToImageJ(Path file) Converts a Cellpose ROI to ROIListData according to ...
static void	extractCellposeOutputs(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo, Path outputRoiOutline, Path outputLabels, Path outputFlows, Path outputProbabilities, Path outputStyles, List<JIPipeTextAnnotation> annotationList, CellposeSegmentationOutputSettings_Old outputParameters)
static String	getCellposeCustomCode()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

getCellposeCustomCode

public static String getCellposeCustomCode()

cellposeROIToImageJ

public static ROIListData cellposeROIToImageJ(Path file)

Converts a Cellpose ROI to ROIListData according to ...

Parameters:

file - the Cellpose ROI

Returns:

ImageJ ROI

cellposeROIJsonToImageJ

public static ROIListData cellposeROIJsonToImageJ(Path file)

Converts ROI in a custom Json format to ROIListData

Parameters:

file - the ROI file

Returns:

ImageJ ROI

extractCellposeOutputs

public static void extractCellposeOutputs(JIPipeMergingDataBatch dataBatch,
                                          JIPipeProgressInfo progressInfo,
                                          Path outputRoiOutline,
                                          Path outputLabels,
                                          Path outputFlows,
                                          Path outputProbabilities,
                                          Path outputStyles,
                                          List<JIPipeTextAnnotation> annotationList,
                                          CellposeSegmentationOutputSettings_Old outputParameters)