org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold

Class CircularHoughSegmentation2DAlgorithm

java.lang.Object

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.CircularHoughSegmentation2DAlgorithm

All Implemented Interfaces:

JIPipeValidatable, JIPipeAdaptiveParametersAlgorithm, JIPipeDataBatchAlgorithm, JIPipeParallelizedAlgorithm, JIPipeParameterCollection

public class CircularHoughSegmentation2DAlgorithm
extends JIPipeSimpleIteratingAlgorithm

Segments using a Hough circle transform

Nested Class Summary

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

JIPipeAlgorithm.StateSerializer

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterUIChangedEvent

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
CircularHoughSegmentation2DAlgorithm(CircularHoughSegmentation2DAlgorithm other) Copies the algorithm
CircularHoughSegmentation2DAlgorithm(JIPipeNodeInfo info)

Method Summary

Modifier and Type	Method and Description
int	getBandwidth()
int	getLocalRadius()
int	getMaxNumCircles()
int	getMaxRadius()
int	getMinNumCircles()
int	getMinRadius()
int	getParallelizationBatchSize() Returns how many threads the actual algorithm requires.
int	getRadiusIncrement()
double	getRatio()
int	getResolution()
double	getThreshold()
boolean	isLocal()
protected void	runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo) Runs code on one data row
void	setBandwidth(int bandwidth)
void	setLocal(boolean local)
void	setLocalRadius(int localRadius)
void	setMaxNumCircles(int maxNumCircles)
void	setMaxRadius(int maxRadius)
void	setMinNumCircles(int minNumCircles)
void	setMinRadius(int minRadius)
void	setRadiusIncrement(int radiusIncrement)
void	setRatio(double ratio)
void	setResolution(int resolution)
void	setThreshold(double threshold)
boolean	supportsParallelization() Indicates to the algorithm base implementation if parallelization is supported.

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

generateDataBatchesDryRun, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, isParallelizationEnabled, isParameterUIVisible, isParameterUIVisible, reportValidity, runParameterSet, runPassThrough, setParallelizationEnabled

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, run

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, canPassThrough, getStateId, getThreadPool, isEnabled, isPassThrough, isPostprocessor, isPreprocessor, loadExample, runPassThrough, setEnabled, setPassThrough, setThreadPool

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, fromJson, fromJsonNode, getAliasIdInParentGraph, getBaseDirectory, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getDependencies, getDisplayName, getEventBus, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getLocations, getLocationWithin, getName, getNewScratch, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProjectCompartment, getProjectDirectory, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isVisibleIn, onDeserialized, onParameterChanged, onParameterStructureChanged, onParameterUIChanged, onSlotConfigurationChanged, onSlotConnected, onSlotDisconnected, registerSubParameter, renderInputSlots, renderOutputSlots, setAllSlotsVirtual, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setLocations, setLocationWithin, setLocationWithin, setParentGraph, setProjectDirectory, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, toggleSlot, toJson, triggerSlotsChangedEvent, updateGraphNodeSlots, updateSlotInheritance

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

addParameterChangeListener, addParameterChangeListener, getContextActions, getParameter, getParameterAccess, setParameter, triggerParameterChange, triggerParameterStructureChange, triggerParameterUIChange

Constructor Detail

CircularHoughSegmentation2DAlgorithm

public CircularHoughSegmentation2DAlgorithm(JIPipeNodeInfo info)

Parameters:

info - algorithm info

CircularHoughSegmentation2DAlgorithm

public CircularHoughSegmentation2DAlgorithm(CircularHoughSegmentation2DAlgorithm other)

Copies the algorithm

Parameters:

other - the original

Method Detail

supportsParallelization

public boolean supportsParallelization()

Description copied from interface: JIPipeParallelizedAlgorithm

Indicates to the algorithm base implementation if parallelization is supported. Use this function to indicate to the algorithm to conditionally enable/disable parallelization.

Specified by:

supportsParallelization in interface JIPipeParallelizedAlgorithm

Overrides:

supportsParallelization in class JIPipeSimpleIteratingAlgorithm

Returns:

If the algorithm supports automated parallelization.

getParallelizationBatchSize

public int getParallelizationBatchSize()

Description copied from interface: JIPipeParallelizedAlgorithm

Returns how many threads the actual algorithm requires. Based on this value, the base algorithm creates batches.

Specified by:

getParallelizationBatchSize in interface JIPipeParallelizedAlgorithm

Overrides:

getParallelizationBatchSize in class JIPipeSimpleIteratingAlgorithm

Returns:

number of threads used by the workload

runIteration

protected void runIteration(JIPipeDataBatch dataBatch,
                            JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeSimpleIteratingAlgorithm

Runs code on one data row

Specified by:

runIteration in class JIPipeSimpleIteratingAlgorithm

Parameters:

dataBatch - The data interface

progressInfo - the progress info from the run

getMinRadius

public int getMinRadius()

setMinRadius

public void setMinRadius(int minRadius)

getMaxRadius

public int getMaxRadius()

setMaxRadius

public void setMaxRadius(int maxRadius)

getRadiusIncrement

public int getRadiusIncrement()

setRadiusIncrement

public void setRadiusIncrement(int radiusIncrement)

getMinNumCircles

public int getMinNumCircles()

setMinNumCircles

public void setMinNumCircles(int minNumCircles)

getMaxNumCircles

public int getMaxNumCircles()

setMaxNumCircles

public void setMaxNumCircles(int maxNumCircles)

getThreshold

public double getThreshold()

setThreshold

public void setThreshold(double threshold)

getResolution

public int getResolution()

setResolution

public void setResolution(int resolution)

getRatio

public double getRatio()

setRatio

public void setRatio(double ratio)

getBandwidth

public int getBandwidth()

setBandwidth

public void setBandwidth(int bandwidth)

getLocalRadius

public int getLocalRadius()

setLocalRadius

public void setLocalRadius(int localRadius)

isLocal

public boolean isLocal()

setLocal

public void setLocal(boolean local)