org.hkijena.jipipe.extensions.imagejalgorithms.ij1.forms

Class DrawMaskAlgorithm

java.lang.Object

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeIteratingMissingDataGeneratorAlgorithm

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.forms.DrawMaskAlgorithm

All Implemented Interfaces:

JIPipeValidatable, JIPipeDataBatchAlgorithm, JIPipeParallelizedAlgorithm, JIPipeParameterCollection

public class DrawMaskAlgorithm
extends JIPipeIteratingMissingDataGeneratorAlgorithm

Nested Class Summary

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

JIPipeAlgorithm.StateSerializer

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterUIChangedEvent

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
DrawMaskAlgorithm(DrawMaskAlgorithm other)
DrawMaskAlgorithm(JIPipeNodeInfo info)

Method Summary

Modifier and Type	Method and Description
protected boolean	canPassThrough() Returns true if the algorithm can apply pass-through.
OptionalIntegerParameter	getOverwriteSizeC()
OptionalIntegerParameter	getOverwriteSizeT()
OptionalIntegerParameter	getOverwriteSizeZ()
protected void	runGenerator(JIPipeMergingDataBatch dataBatch, JIPipeDataSlot inputSlot, JIPipeDataSlot outputSlot, JIPipeProgressInfo progressInfo) Generates data and puts the output into the specified output slot
void	runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations) Runs a parameter set iteration
void	setOverwriteSizeC(OptionalIntegerParameter overwriteSizeC)
void	setOverwriteSizeT(OptionalIntegerParameter overwriteSizeT)
void	setOverwriteSizeZ(OptionalIntegerParameter overwriteSizeZ)
boolean	supportsParallelization() Indicates to the algorithm base implementation if parallelization is supported.

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeIteratingMissingDataGeneratorAlgorithm

generateDataBatchesDryRun, getCorrespondingOutputSlot, getDataBatchGenerationSettings, getGenerationSettingsInterface, getParallelizationBatchSize, isKeepOriginalAnnotations, isParallelizationEnabled, isParameterUIVisible, isParameterUIVisible, runIteration, setKeepOriginalAnnotations, setParallelizationEnabled

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, run

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, getStateId, getThreadPool, isEnabled, isPassThrough, isPostprocessor, isPreprocessor, loadExample, reportValidity, runPassThrough, setEnabled, setPassThrough, setThreadPool

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, fromJson, fromJsonNode, getAliasIdInParentGraph, getBaseDirectory, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getDependencies, getDisplayName, getEventBus, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getLocations, getLocationWithin, getName, getNewScratch, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProjectCompartment, getProjectDirectory, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isVisibleIn, onDeserialized, onParameterChanged, onParameterStructureChanged, onParameterUIChanged, onSlotConfigurationChanged, onSlotConnected, onSlotDisconnected, registerSubParameter, renderInputSlots, renderOutputSlots, setAllSlotsVirtual, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setLocations, setLocationWithin, setLocationWithin, setParentGraph, setProjectDirectory, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, toggleSlot, toJson, triggerSlotsChangedEvent, updateGraphNodeSlots, updateSlotInheritance

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

addParameterChangeListener, addParameterChangeListener, getContextActions, getParameter, getParameterAccess, setParameter, triggerParameterChange, triggerParameterStructureChange, triggerParameterUIChange

Constructor Detail

DrawMaskAlgorithm

public DrawMaskAlgorithm(JIPipeNodeInfo info)

DrawMaskAlgorithm

public DrawMaskAlgorithm(DrawMaskAlgorithm other)

Method Detail

runParameterSet

public void runParameterSet(JIPipeProgressInfo progressInfo,
                            List<JIPipeTextAnnotation> parameterAnnotations)

Description copied from class: JIPipeParameterSlotAlgorithm

Runs a parameter set iteration

Overrides:

runParameterSet in class JIPipeIteratingMissingDataGeneratorAlgorithm

Parameters:

progressInfo - progress info from the run

parameterAnnotations - parameter annotations

supportsParallelization

public boolean supportsParallelization()

Description copied from interface: JIPipeParallelizedAlgorithm

Indicates to the algorithm base implementation if parallelization is supported. Use this function to indicate to the algorithm to conditionally enable/disable parallelization.

Specified by:

supportsParallelization in interface JIPipeParallelizedAlgorithm

Overrides:

supportsParallelization in class JIPipeIteratingMissingDataGeneratorAlgorithm

Returns:

If the algorithm supports automated parallelization.

canPassThrough

protected boolean canPassThrough()

Description copied from class: JIPipeAlgorithm

Returns true if the algorithm can apply pass-through. Override this method to implement your own checks

Overrides:

canPassThrough in class JIPipeAlgorithm

Returns:

true if the algorithm can apply pass-through

runGenerator

protected void runGenerator(JIPipeMergingDataBatch dataBatch,
                            JIPipeDataSlot inputSlot,
                            JIPipeDataSlot outputSlot,
                            JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeIteratingMissingDataGeneratorAlgorithm

Generates data and puts the output into the specified output slot

Specified by:

runGenerator in class JIPipeIteratingMissingDataGeneratorAlgorithm

Parameters:

dataBatch - the data batch

inputSlot - the input slot that should be generated. Please note that it does not contain any data for this batch.

outputSlot - the output slot where data should be put.

progressInfo - the progress info

getOverwriteSizeZ

public OptionalIntegerParameter getOverwriteSizeZ()

setOverwriteSizeZ

public void setOverwriteSizeZ(OptionalIntegerParameter overwriteSizeZ)

getOverwriteSizeC

public OptionalIntegerParameter getOverwriteSizeC()

setOverwriteSizeC

public void setOverwriteSizeC(OptionalIntegerParameter overwriteSizeC)

getOverwriteSizeT

public OptionalIntegerParameter getOverwriteSizeT()

setOverwriteSizeT

public void setOverwriteSizeT(OptionalIntegerParameter overwriteSizeT)