org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions

Class ExpressionSlicerAlgorithm

java.lang.Object

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ExpressionSlicerAlgorithm

All Implemented Interfaces:

JIPipeValidatable, JIPipeAdaptiveParametersAlgorithm, JIPipeDataBatchAlgorithm, JIPipeParallelizedAlgorithm, JIPipeParameterCollection

public class ExpressionSlicerAlgorithm
extends JIPipeSimpleIteratingAlgorithm

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	ExpressionSlicerAlgorithm.VariableSource

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

JIPipeAlgorithm.StateSerializer

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterUIChangedEvent

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
ExpressionSlicerAlgorithm(ExpressionSlicerAlgorithm other)
ExpressionSlicerAlgorithm(JIPipeNodeInfo info)

Method Summary

Modifier and Type	Method and Description
OptionalAnnotationNameParameter	getAnnotateC()
OptionalAnnotationNameParameter	getAnnotateT()
OptionalAnnotationNameParameter	getAnnotateZ()
DefaultExpressionParameter	getExpressionC()
DefaultExpressionParameter	getExpressionT()
DefaultExpressionParameter	getExpressionZ()
boolean	isIteratePerC()
boolean	isIteratePerT()
boolean	isIteratePerZ()
boolean	isRemoveDuplicates()
protected void	runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo) Runs code on one data row
void	setAnnotateC(OptionalAnnotationNameParameter annotateC)
void	setAnnotateT(OptionalAnnotationNameParameter annotateT)
void	setAnnotateZ(OptionalAnnotationNameParameter annotateZ)
void	setExpressionC(DefaultExpressionParameter expressionC)
void	setExpressionT(DefaultExpressionParameter expressionT)
void	setExpressionZ(DefaultExpressionParameter expressionZ)
void	setIteratePerC(boolean iteratePerC)
void	setIteratePerT(boolean iteratePerT)
void	setIteratePerZ(boolean iteratePerZ)
void	setRemoveDuplicates(boolean removeDuplicates)

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

generateDataBatchesDryRun, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getParallelizationBatchSize, isParallelizationEnabled, isParameterUIVisible, isParameterUIVisible, reportValidity, runParameterSet, runPassThrough, setParallelizationEnabled, supportsParallelization

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, run

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, canPassThrough, getStateId, getThreadPool, isEnabled, isPassThrough, isPostprocessor, isPreprocessor, loadExample, runPassThrough, setEnabled, setPassThrough, setThreadPool

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, fromJson, fromJsonNode, getAliasIdInParentGraph, getBaseDirectory, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getDependencies, getDisplayName, getEventBus, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getLocations, getLocationWithin, getName, getNewScratch, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProjectCompartment, getProjectDirectory, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isVisibleIn, onDeserialized, onParameterChanged, onParameterStructureChanged, onParameterUIChanged, onSlotConfigurationChanged, onSlotConnected, onSlotDisconnected, registerSubParameter, renderInputSlots, renderOutputSlots, setAllSlotsVirtual, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setLocations, setLocationWithin, setLocationWithin, setParentGraph, setProjectDirectory, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, toggleSlot, toJson, triggerSlotsChangedEvent, updateGraphNodeSlots, updateSlotInheritance

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

addParameterChangeListener, addParameterChangeListener, getContextActions, getParameter, getParameterAccess, setParameter, triggerParameterChange, triggerParameterStructureChange, triggerParameterUIChange

Constructor Detail

ExpressionSlicerAlgorithm

public ExpressionSlicerAlgorithm(JIPipeNodeInfo info)

ExpressionSlicerAlgorithm

public ExpressionSlicerAlgorithm(ExpressionSlicerAlgorithm other)

Method Detail

runIteration

protected void runIteration(JIPipeDataBatch dataBatch,
                            JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeSimpleIteratingAlgorithm

Runs code on one data row

Specified by:

runIteration in class JIPipeSimpleIteratingAlgorithm

Parameters:

dataBatch - The data interface

progressInfo - the progress info from the run

getExpressionZ

public DefaultExpressionParameter getExpressionZ()

setExpressionZ

public void setExpressionZ(DefaultExpressionParameter expressionZ)

getExpressionC

public DefaultExpressionParameter getExpressionC()

setExpressionC

public void setExpressionC(DefaultExpressionParameter expressionC)

getExpressionT

public DefaultExpressionParameter getExpressionT()

setExpressionT

public void setExpressionT(DefaultExpressionParameter expressionT)

isIteratePerZ

public boolean isIteratePerZ()

setIteratePerZ

public void setIteratePerZ(boolean iteratePerZ)

isIteratePerC

public boolean isIteratePerC()

setIteratePerC

public void setIteratePerC(boolean iteratePerC)

isIteratePerT

public boolean isIteratePerT()

setIteratePerT

public void setIteratePerT(boolean iteratePerT)

isRemoveDuplicates

public boolean isRemoveDuplicates()

setRemoveDuplicates

public void setRemoveDuplicates(boolean removeDuplicates)

getAnnotateZ

public OptionalAnnotationNameParameter getAnnotateZ()

setAnnotateZ

public void setAnnotateZ(OptionalAnnotationNameParameter annotateZ)

getAnnotateC

public OptionalAnnotationNameParameter getAnnotateC()

setAnnotateC

public void setAnnotateC(OptionalAnnotationNameParameter annotateC)

getAnnotateT

public OptionalAnnotationNameParameter getAnnotateT()

setAnnotateT

public void setAnnotateT(OptionalAnnotationNameParameter annotateT)