org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics

Class KeyValueThresholdStatisticsGenerator

java.lang.Object

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.KeyValueThresholdStatisticsGenerator

All Implemented Interfaces:

JIPipeValidatable, JIPipeAdaptiveParametersAlgorithm, JIPipeDataBatchAlgorithm, JIPipeParallelizedAlgorithm, JIPipeParameterCollection

public class KeyValueThresholdStatisticsGenerator
extends JIPipeIteratingAlgorithm

Nested Class Summary

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

JIPipeAlgorithm.StateSerializer

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterUIChangedEvent

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
KeyValueThresholdStatisticsGenerator(JIPipeNodeInfo info)
KeyValueThresholdStatisticsGenerator(KeyValueThresholdStatisticsGenerator other)

Method Summary

Modifier and Type	Method and Description
DefaultExpressionParameter	getIntegrationFunctionBackground()
DefaultExpressionParameter	getIntegrationFunctionForeground()
String	getOutputBackgroundColumn()
String	getOutputForegroundColumn()
String	getOutputThresholdColumn()
boolean	isInvertThreshold()
protected void	runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo) Runs code on one data row
void	setIntegrationFunctionBackground(DefaultExpressionParameter integrationFunctionBackground)
void	setIntegrationFunctionForeground(DefaultExpressionParameter integrationFunctionForeground)
void	setInvertThreshold(boolean invertThreshold)
void	setOutputBackgroundColumn(String outputBackgroundColumn)
void	setOutputForegroundColumn(String outputForegroundColumn)
void	setOutputThresholdColumn(String outputThresholdColumn)

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

generateDataBatchesDryRun, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getParallelizationBatchSize, isParallelizationEnabled, isParameterUIVisible, isParameterUIVisible, runParameterSet, runPassThrough, setParallelizationEnabled, supportsParallelization

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, run

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, canPassThrough, getStateId, getThreadPool, isEnabled, isPassThrough, isPostprocessor, isPreprocessor, loadExample, reportValidity, runPassThrough, setEnabled, setPassThrough, setThreadPool

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, fromJson, fromJsonNode, getAliasIdInParentGraph, getBaseDirectory, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getDependencies, getDisplayName, getEventBus, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getLocations, getLocationWithin, getName, getNewScratch, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProjectCompartment, getProjectDirectory, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isVisibleIn, onDeserialized, onParameterChanged, onParameterStructureChanged, onParameterUIChanged, onSlotConfigurationChanged, onSlotConnected, onSlotDisconnected, registerSubParameter, renderInputSlots, renderOutputSlots, setAllSlotsVirtual, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setLocations, setLocationWithin, setLocationWithin, setParentGraph, setProjectDirectory, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, toggleSlot, toJson, triggerSlotsChangedEvent, updateGraphNodeSlots, updateSlotInheritance

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

addParameterChangeListener, addParameterChangeListener, getContextActions, getParameter, getParameterAccess, setParameter, triggerParameterChange, triggerParameterStructureChange, triggerParameterUIChange

Constructor Detail

KeyValueThresholdStatisticsGenerator

public KeyValueThresholdStatisticsGenerator(JIPipeNodeInfo info)

KeyValueThresholdStatisticsGenerator

public KeyValueThresholdStatisticsGenerator(KeyValueThresholdStatisticsGenerator other)

Method Detail

runIteration

protected void runIteration(JIPipeDataBatch dataBatch,
                            JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeIteratingAlgorithm

Runs code on one data row

Specified by:

runIteration in class JIPipeIteratingAlgorithm

Parameters:

dataBatch - The data interface

progressInfo - the progress info from the run

getOutputThresholdColumn

public String getOutputThresholdColumn()

setOutputThresholdColumn

public void setOutputThresholdColumn(String outputThresholdColumn)

getOutputForegroundColumn

public String getOutputForegroundColumn()

setOutputForegroundColumn

public void setOutputForegroundColumn(String outputForegroundColumn)

getOutputBackgroundColumn

public String getOutputBackgroundColumn()

setOutputBackgroundColumn

public void setOutputBackgroundColumn(String outputBackgroundColumn)

getIntegrationFunctionForeground

public DefaultExpressionParameter getIntegrationFunctionForeground()

setIntegrationFunctionForeground

public void setIntegrationFunctionForeground(DefaultExpressionParameter integrationFunctionForeground)

getIntegrationFunctionBackground

public DefaultExpressionParameter getIntegrationFunctionBackground()

setIntegrationFunctionBackground

public void setIntegrationFunctionBackground(DefaultExpressionParameter integrationFunctionBackground)

isInvertThreshold

public boolean isInvertThreshold()

setInvertThreshold

public void setInvertThreshold(boolean invertThreshold)