org.hkijena.jipipe.extensions.imagejalgorithms.ij1.calibration

Class SetPhysicalDimensionsByAnnotationsAlgorithm

java.lang.Object

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.calibration.SetPhysicalDimensionsByAnnotationsAlgorithm

All Implemented Interfaces:

JIPipeValidatable, JIPipeAdaptiveParametersAlgorithm, JIPipeDataBatchAlgorithm, JIPipeParallelizedAlgorithm, JIPipeParameterCollection

public class SetPhysicalDimensionsByAnnotationsAlgorithm
extends JIPipeSimpleIteratingAlgorithm

Nested Class Summary

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

JIPipeAlgorithm.StateSerializer

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterUIChangedEvent

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
SetPhysicalDimensionsByAnnotationsAlgorithm(JIPipeNodeInfo info)
SetPhysicalDimensionsByAnnotationsAlgorithm(SetPhysicalDimensionsByAnnotationsAlgorithm other)

Method Summary

Modifier and Type	Method and Description
OptionalAnnotationNameParameter	getPhysicalDimensionT()
OptionalAnnotationNameParameter	getPhysicalDimensionValue()
OptionalAnnotationNameParameter	getPhysicalDimensionX()
OptionalAnnotationNameParameter	getPhysicalDimensionY()
OptionalAnnotationNameParameter	getPhysicalDimensionZ()
protected void	runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo) Runs code on one data row
void	setPhysicalDimensionT(OptionalAnnotationNameParameter physicalDimensionT)
void	setPhysicalDimensionValue(OptionalAnnotationNameParameter physicalDimensionValue)
void	setPhysicalDimensionX(OptionalAnnotationNameParameter physicalDimensionX)
void	setPhysicalDimensionY(OptionalAnnotationNameParameter physicalDimensionY)
void	setPhysicalDimensionZ(OptionalAnnotationNameParameter physicalDimensionZ)

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

generateDataBatchesDryRun, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getParallelizationBatchSize, isParallelizationEnabled, isParameterUIVisible, isParameterUIVisible, reportValidity, runParameterSet, runPassThrough, setParallelizationEnabled, supportsParallelization

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, run

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, canPassThrough, getStateId, getThreadPool, isEnabled, isPassThrough, isPostprocessor, isPreprocessor, loadExample, runPassThrough, setEnabled, setPassThrough, setThreadPool

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, fromJson, fromJsonNode, getAliasIdInParentGraph, getBaseDirectory, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getDependencies, getDisplayName, getEventBus, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getLocations, getLocationWithin, getName, getNewScratch, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProjectCompartment, getProjectDirectory, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isVisibleIn, onDeserialized, onParameterChanged, onParameterStructureChanged, onParameterUIChanged, onSlotConfigurationChanged, onSlotConnected, onSlotDisconnected, registerSubParameter, renderInputSlots, renderOutputSlots, setAllSlotsVirtual, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setLocations, setLocationWithin, setLocationWithin, setParentGraph, setProjectDirectory, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, toggleSlot, toJson, triggerSlotsChangedEvent, updateGraphNodeSlots, updateSlotInheritance

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

addParameterChangeListener, addParameterChangeListener, getContextActions, getParameter, getParameterAccess, setParameter, triggerParameterChange, triggerParameterStructureChange, triggerParameterUIChange

Constructor Detail

SetPhysicalDimensionsByAnnotationsAlgorithm

public SetPhysicalDimensionsByAnnotationsAlgorithm(JIPipeNodeInfo info)

SetPhysicalDimensionsByAnnotationsAlgorithm

public SetPhysicalDimensionsByAnnotationsAlgorithm(SetPhysicalDimensionsByAnnotationsAlgorithm other)

Method Detail

runIteration

protected void runIteration(JIPipeDataBatch dataBatch,
                            JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeSimpleIteratingAlgorithm

Runs code on one data row

Specified by:

runIteration in class JIPipeSimpleIteratingAlgorithm

Parameters:

dataBatch - The data interface

progressInfo - the progress info from the run

getPhysicalDimensionX

public OptionalAnnotationNameParameter getPhysicalDimensionX()

setPhysicalDimensionX

public void setPhysicalDimensionX(OptionalAnnotationNameParameter physicalDimensionX)

getPhysicalDimensionY

public OptionalAnnotationNameParameter getPhysicalDimensionY()

setPhysicalDimensionY

public void setPhysicalDimensionY(OptionalAnnotationNameParameter physicalDimensionY)

getPhysicalDimensionZ

public OptionalAnnotationNameParameter getPhysicalDimensionZ()

setPhysicalDimensionZ

public void setPhysicalDimensionZ(OptionalAnnotationNameParameter physicalDimensionZ)

getPhysicalDimensionT

public OptionalAnnotationNameParameter getPhysicalDimensionT()

setPhysicalDimensionT

public void setPhysicalDimensionT(OptionalAnnotationNameParameter physicalDimensionT)

getPhysicalDimensionValue

public OptionalAnnotationNameParameter getPhysicalDimensionValue()

setPhysicalDimensionValue

public void setPhysicalDimensionValue(OptionalAnnotationNameParameter physicalDimensionValue)