org.hkijena.jipipe.extensions.imagejalgorithms.ij1.calibration

Class SetPhysicalDimensionsAlgorithm

java.lang.Object

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.calibration.SetPhysicalDimensionsAlgorithm

All Implemented Interfaces:

JIPipeValidatable, JIPipeAdaptiveParametersAlgorithm, JIPipeDataBatchAlgorithm, JIPipeParallelizedAlgorithm, JIPipeParameterCollection

public class SetPhysicalDimensionsAlgorithm
extends JIPipeSimpleIteratingAlgorithm

Nested Class Summary

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

JIPipeAlgorithm.StateSerializer

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterUIChangedEvent

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
SetPhysicalDimensionsAlgorithm(JIPipeNodeInfo info)
SetPhysicalDimensionsAlgorithm(SetPhysicalDimensionsAlgorithm other)

Method Summary

Modifier and Type	Method and Description
OptionalQuantity	getPhysicalDimensionT()
OptionalQuantity	getPhysicalDimensionValue()
OptionalQuantity	getPhysicalDimensionX()
OptionalQuantity	getPhysicalDimensionY()
OptionalQuantity	getPhysicalDimensionZ()
protected void	runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo) Runs code on one data row
void	setPhysicalDimensionT(OptionalQuantity physicalDimensionT)
void	setPhysicalDimensionValue(OptionalQuantity physicalDimensionValue)
void	setPhysicalDimensionX(OptionalQuantity physicalDimensionX)
void	setPhysicalDimensionY(OptionalQuantity physicalDimensionY)
void	setPhysicalDimensionZ(OptionalQuantity physicalDimensionZ)

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

generateDataBatchesDryRun, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getParallelizationBatchSize, isParallelizationEnabled, isParameterUIVisible, isParameterUIVisible, reportValidity, runParameterSet, runPassThrough, setParallelizationEnabled, supportsParallelization

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, run

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, canPassThrough, getStateId, getThreadPool, isEnabled, isPassThrough, isPostprocessor, isPreprocessor, loadExample, runPassThrough, setEnabled, setPassThrough, setThreadPool

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, fromJson, fromJsonNode, getAliasIdInParentGraph, getBaseDirectory, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getDependencies, getDisplayName, getEventBus, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getLocations, getLocationWithin, getName, getNewScratch, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProjectCompartment, getProjectDirectory, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isVisibleIn, onDeserialized, onParameterChanged, onParameterStructureChanged, onParameterUIChanged, onSlotConfigurationChanged, onSlotConnected, onSlotDisconnected, registerSubParameter, renderInputSlots, renderOutputSlots, setAllSlotsVirtual, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setLocations, setLocationWithin, setLocationWithin, setParentGraph, setProjectDirectory, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, toggleSlot, toJson, triggerSlotsChangedEvent, updateGraphNodeSlots, updateSlotInheritance

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

addParameterChangeListener, addParameterChangeListener, getContextActions, getParameter, getParameterAccess, setParameter, triggerParameterChange, triggerParameterStructureChange, triggerParameterUIChange

Constructor Detail

SetPhysicalDimensionsAlgorithm

public SetPhysicalDimensionsAlgorithm(JIPipeNodeInfo info)

SetPhysicalDimensionsAlgorithm

public SetPhysicalDimensionsAlgorithm(SetPhysicalDimensionsAlgorithm other)

Method Detail

runIteration

protected void runIteration(JIPipeDataBatch dataBatch,
                            JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeSimpleIteratingAlgorithm

Runs code on one data row

Specified by:

runIteration in class JIPipeSimpleIteratingAlgorithm

Parameters:

dataBatch - The data interface

progressInfo - the progress info from the run

getPhysicalDimensionX

public OptionalQuantity getPhysicalDimensionX()

setPhysicalDimensionX

public void setPhysicalDimensionX(OptionalQuantity physicalDimensionX)

getPhysicalDimensionY

public OptionalQuantity getPhysicalDimensionY()

setPhysicalDimensionY

public void setPhysicalDimensionY(OptionalQuantity physicalDimensionY)

getPhysicalDimensionZ

public OptionalQuantity getPhysicalDimensionZ()

setPhysicalDimensionZ

public void setPhysicalDimensionZ(OptionalQuantity physicalDimensionZ)

getPhysicalDimensionT

public OptionalQuantity getPhysicalDimensionT()

setPhysicalDimensionT

public void setPhysicalDimensionT(OptionalQuantity physicalDimensionT)

getPhysicalDimensionValue

public OptionalQuantity getPhysicalDimensionValue()

setPhysicalDimensionValue

public void setPhysicalDimensionValue(OptionalQuantity physicalDimensionValue)