ImageJAlgorithmsExtension (jipipe 1.76.1-SNAPSHOT API)

java.lang.Object
- org.scijava.AbstractContextual
- - org.scijava.plugin.AbstractRichPlugin
  - - org.scijava.service.AbstractService
    - - org.hkijena.jipipe.JIPipeDefaultJavaExtension
      - org.hkijena.jipipe.extensions.JIPipePrepackagedDefaultJavaExtension
        
        org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension

All Implemented Interfaces:

Comparable<Prioritized>, JIPipeValidatable, JIPipeDependency, JIPipeExtension, JIPipeJavaExtension, Contextual, Disposable, Identifiable, Initializable, Locatable, Logged, HasPluginInfo, RichPlugin, SciJavaPlugin, Prioritized, Service, Versioned
```
public class ImageJAlgorithmsExtension
extends JIPipePrepackagedDefaultJavaExtension
```
Extension that adds ImageJ2 algorithms

Field Summary

Fields
Modifier and Type	Field and Description
`static Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>>`	`ADD_MASK_QUALIFIER` Conversion rules that convert any input data type into their respective mask data type
`static JIPipeDependency`	`AS_DEPENDENCY` Dependency instance to be used for creating the set of dependencies
`static Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>>`	`DECREASE_DIMENSION_CONVERSION` Conversion rules convert higher-dimensional data to a lower-dimensional counterpart. 2D data remains 2D data.
`static Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>>`	`REMOVE_MASK_QUALIFIER` Conversion rules from mask data types to their respective 8-bit types
`static JIPipeResourceManager`	`RESOURCES`
`static Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>>`	`TO_2D_CONVERSION` Conversion rules convert higher-dimensional data to their 2D counterparts
`static Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>>`	`TO_3D_CONVERSION` Conversion rules convert data to their 3D counterparts
`static Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>>`	`TO_COLOR_RGB_CONVERSION` Conversion rules that convert color types into colored images
`static Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>>`	`TO_GRAYSCALE_CONVERSION` Conversion rules that convert color types into greyscale
`static Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>>`	`TO_GRAYSCALE32F_CONVERSION` Conversion rules that convert color types into colored images

Constructor Summary

Constructors
Constructor and Description

ImageJAlgorithmsExtension()

Constructors
Constructor and Description
`ImageJAlgorithmsExtension()`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`JIPipeAuthorMetadata.List`	`getAcknowledgements()` Returns additionally cited authors
`PluginCategoriesEnumParameter.List`	`getCategories()` The categories of this extension (see `PluginCategoriesEnumParameter` for predefined values)
`Set<JIPipeDependency>`	`getDependencies()` List of JIPipe dependencies.
`StringList`	`getDependencyCitations()` Returns all dependent work
`String`	`getDependencyId()`
`HTMLText`	`getDescription()`
`List<JIPipeImageJUpdateSiteDependency>`	`getImageJUpdateSiteDependencies()` List of ImageJ update sites that are dependencies
`String`	`getName()`
`ImageParameter`	`getThumbnail()` Returns the thumbnail
`void`	`register(JIPipe jiPipe, Context context, JIPipeProgressInfo progressInfo)` Registers custom modules into JIPipe

Methods inherited from class org.hkijena.jipipe.extensions.JIPipePrepackagedDefaultJavaExtension
getAuthors, getCitation, getLicense, getLogo, getWebsite

Methods inherited from class org.hkijena.jipipe.JIPipeDefaultJavaExtension
configureDefaultImageJAdapters, configureDefaultImageJAdapters, getDependencyLocation, getDependencyVersion, getMetadata, getRegistry, getSummary, registerContextMenuAction, registerDatatype, registerDatatype, registerDatatypeConversion, registerDatatypeDisplayOperation, registerDatatypeImportOperation, registerDatatypeOperation, registerEnumParameterType, registerEnvironment, registerEnvironmentInstaller, registerExpressionFunction, registerExpressionFunction, registerGraphEditorToolBarButtonExtension, registerImageJDataExporter, registerImageJDataImporter, registerMenuExtension, registerNodeExample, registerNodeExamplesFromResources, registerNodeExamplesFromResources, registerNodeType, registerNodeType, registerNodeType, registerNodeType, registerNodeType, registerNodeTypeCategory, registerParameterEditor, registerParameterGenerator, registerParameterType, registerParameterType, registerParameterType, registerParameterType, registerParameterType, registerParameterType, registerProjectTemplatesFromResources, registerProjectTemplatesFromResources, registerSettingsSheet, registerSettingsSheet, registerTableColumnOperation, registerTableColumnOperationAndExpressionFunction, registerUtility, reportValidity, setRegistry

Methods inherited from class org.scijava.service.AbstractService
getContext, setContext, toString

Methods inherited from class org.scijava.plugin.AbstractRichPlugin
getInfo, getPriority, setInfo, setPriority

Methods inherited from class org.scijava.AbstractContextual
context

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.JIPipeJavaExtension
getSplashIcons, postprocess

Methods inherited from interface org.hkijena.jipipe.JIPipeExtension
isActivated, isBeta, isCoreExtension, isScheduledForActivation, isScheduledForDeactivation

Methods inherited from interface org.hkijena.jipipe.JIPipeDependency
getAllDependencies, getAllDependencies, getAllImageJUpdateSiteDependencies, getImageJUpdateSites, simplifyAndMinimize, toHtmlElement

Methods inherited from interface org.hkijena.jipipe.api.JIPipeValidatable
generateValidityReport

Methods inherited from interface org.scijava.service.Service
initialize, registerEventHandlers

Methods inherited from interface org.scijava.plugin.RichPlugin
getIdentifier, log

Methods inherited from interface org.scijava.Contextual
context

Methods inherited from interface org.scijava.Prioritized
compareTo, getPriority, setPriority

Methods inherited from interface org.scijava.plugin.HasPluginInfo
getInfo, setInfo

Methods inherited from interface org.scijava.Locatable
getLocation

Methods inherited from interface org.scijava.Versioned
getVersion

Methods inherited from interface org.scijava.Disposable
dispose

- Field Detail
  - RESOURCES
```
public static final JIPipeResourceManager RESOURCES
```
  - AS_DEPENDENCY
```
public static final JIPipeDependency AS_DEPENDENCY
```
    Dependency instance to be used for creating the set of dependencies
  - REMOVE_MASK_QUALIFIER
```
public static final Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> REMOVE_MASK_QUALIFIER
```
    Conversion rules from mask data types to their respective 8-bit types
  - ADD_MASK_QUALIFIER
```
public static final Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> ADD_MASK_QUALIFIER
```
    Conversion rules that convert any input data type into their respective mask data type
  - TO_GRAYSCALE_CONVERSION
```
public static final Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> TO_GRAYSCALE_CONVERSION
```
    Conversion rules that convert color types into greyscale
  - TO_COLOR_RGB_CONVERSION
```
public static final Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> TO_COLOR_RGB_CONVERSION
```
    Conversion rules that convert color types into colored images
  - TO_GRAYSCALE32F_CONVERSION
```
public static final Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> TO_GRAYSCALE32F_CONVERSION
```
    Conversion rules that convert color types into colored images
  - DECREASE_DIMENSION_CONVERSION
```
public static final Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> DECREASE_DIMENSION_CONVERSION
```
    Conversion rules convert higher-dimensional data to a lower-dimensional counterpart. 2D data remains 2D data.
  - TO_2D_CONVERSION
```
public static final Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> TO_2D_CONVERSION
```
    Conversion rules convert higher-dimensional data to their 2D counterparts
  - TO_3D_CONVERSION
```
public static final Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> TO_3D_CONVERSION
```
    Conversion rules convert data to their 3D counterparts
- Constructor Detail
  - ImageJAlgorithmsExtension
```
public ImageJAlgorithmsExtension()
```
- Method Detail
  - getThumbnail
```
public ImageParameter getThumbnail()
```
    Description copied from class: JIPipeDefaultJavaExtension
    
    Returns the thumbnail
    
    Overrides:
    
    getThumbnail in class JIPipeDefaultJavaExtension
    
    Returns:
    
    the thumbnail
  - getDependencies
```
public Set<JIPipeDependency> getDependencies()
```
    Description copied from interface: JIPipeDependency
    
    List of JIPipe dependencies. This can contain nested or even cyclic dependencies. The storage of dependencies into JSON format is handled by getTraversedDependencies()
    
    Specified by:
    
    getDependencies in interface JIPipeDependency
    
    Overrides:
    
    getDependencies in class JIPipeDefaultJavaExtension
    
    Returns:
    
    the list of JIPipe dependencies
  - getCategories
```
public PluginCategoriesEnumParameter.List getCategories()
```
    Description copied from class: JIPipeDefaultJavaExtension
    
    The categories of this extension (see PluginCategoriesEnumParameter for predefined values)
    
    Overrides:
    
    getCategories in class JIPipeDefaultJavaExtension
    
    Returns:
    
    the categories
  - getAcknowledgements
```
public JIPipeAuthorMetadata.List getAcknowledgements()
```
    Description copied from class: JIPipeDefaultJavaExtension
    
    Returns additionally cited authors
    
    Overrides:
    
    getAcknowledgements in class JIPipeDefaultJavaExtension
    
    Returns:
    
    the authors
  - getDependencyCitations
```
public StringList getDependencyCitations()
```
    Description copied from class: JIPipeDefaultJavaExtension
    
    Returns all dependent work
    
    Specified by:
    
    getDependencyCitations in class JIPipeDefaultJavaExtension
    
    Returns:
    
    dependent work
  - getImageJUpdateSiteDependencies
```
public List<JIPipeImageJUpdateSiteDependency> getImageJUpdateSiteDependencies()
```
    Description copied from interface: JIPipeDependency
    
    List of ImageJ update sites that are dependencies
    
    Returns:
    
    the list of update sites
  - getName
```
public String getName()
```
    Specified by:
    
    getName in class JIPipeDefaultJavaExtension
    
    Returns:
    
    The extension name
  - getDescription
```
public HTMLText getDescription()
```
    Specified by:
    
    getDescription in class JIPipeDefaultJavaExtension
    
    Returns:
    
    The extension description
  - register
```
public void register(JIPipe jiPipe,
                     Context context,
                     JIPipeProgressInfo progressInfo)
```
    Description copied from interface: JIPipeJavaExtension
    
    Registers custom modules into JIPipe
    
    Parameters:
    
    jiPipe - the JIPipe instance that calls this function
    
    context - the SciJava Context
    
    progressInfo - the progress info
  - getDependencyId
```
public String getDependencyId()
```
    Returns:
    
    The unique dependency ID

Class ImageJAlgorithmsExtension

Field Summary

Constructor Summary

Method Summary

Methods inherited from class org.hkijena.jipipe.extensions.JIPipePrepackagedDefaultJavaExtension

Methods inherited from class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Methods inherited from class org.scijava.service.AbstractService

Methods inherited from class org.scijava.plugin.AbstractRichPlugin

Methods inherited from class org.scijava.AbstractContextual

Methods inherited from class java.lang.Object

Methods inherited from interface org.hkijena.jipipe.JIPipeJavaExtension

Methods inherited from interface org.hkijena.jipipe.JIPipeExtension

Methods inherited from interface org.hkijena.jipipe.JIPipeDependency

Methods inherited from interface org.hkijena.jipipe.api.JIPipeValidatable

Methods inherited from interface org.scijava.service.Service

Methods inherited from interface org.scijava.plugin.RichPlugin

Methods inherited from interface org.scijava.Contextual

Methods inherited from interface org.scijava.Prioritized

Methods inherited from interface org.scijava.plugin.HasPluginInfo

Methods inherited from interface org.scijava.Locatable

Methods inherited from interface org.scijava.Versioned

Methods inherited from interface org.scijava.Disposable

Field Detail

RESOURCES

AS_DEPENDENCY

REMOVE_MASK_QUALIFIER

ADD_MASK_QUALIFIER

TO_GRAYSCALE_CONVERSION

TO_COLOR_RGB_CONVERSION

TO_GRAYSCALE32F_CONVERSION

DECREASE_DIMENSION_CONVERSION

TO_2D_CONVERSION

TO_3D_CONVERSION

Constructor Detail

ImageJAlgorithmsExtension

Method Detail

getThumbnail

getDependencies

getCategories

getAcknowledgements

getDependencyCitations

getImageJUpdateSiteDependencies

getName

getDescription

register

getDependencyId