org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background

Class RollingBallBackgroundEstimator2DAlgorithm

java.lang.Object

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

All Implemented Interfaces:

JIPipeValidatable, JIPipeAdaptiveParametersAlgorithm, JIPipeDataBatchAlgorithm, JIPipeParallelizedAlgorithm, JIPipeParameterCollection

public class RollingBallBackgroundEstimator2DAlgorithm
extends JIPipeSimpleIteratingAlgorithm

Wrapper around RankFilters

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	RollingBallBackgroundEstimator2DAlgorithm.BackgroundType Available background types
static class	RollingBallBackgroundEstimator2DAlgorithm.Method Available methods

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

JIPipeAlgorithm.StateSerializer

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterUIChangedEvent

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
RollingBallBackgroundEstimator2DAlgorithm(JIPipeNodeInfo info) Instantiates a new node type.
RollingBallBackgroundEstimator2DAlgorithm(RollingBallBackgroundEstimator2DAlgorithm other) Instantiates a new node type.

Method Summary

Modifier and Type	Method and Description
RollingBallBackgroundEstimator2DAlgorithm.BackgroundType	getBackgroundType()
RollingBallBackgroundEstimator2DAlgorithm.Method	getMethod()
double	getRadius()
boolean	isCorrectCorners()
boolean	isPreSmoothing()
boolean	isSeparateChannels()
boolean	isSubtract()
void	reportValidity(JIPipeIssueReport report) Generates a validity report
protected void	runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo) Runs code on one data row
void	setBackgroundType(RollingBallBackgroundEstimator2DAlgorithm.BackgroundType backgroundType)
void	setCorrectCorners(boolean correctCorners)
void	setMethod(RollingBallBackgroundEstimator2DAlgorithm.Method method)
void	setPreSmoothing(boolean preSmoothing)
boolean	setRadius(double radius)
void	setSeparateChannels(boolean separateChannels)
void	setSubtract(boolean subtract)

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

generateDataBatchesDryRun, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getParallelizationBatchSize, isParallelizationEnabled, isParameterUIVisible, isParameterUIVisible, runParameterSet, runPassThrough, setParallelizationEnabled, supportsParallelization

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, run

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, canPassThrough, getStateId, getThreadPool, isEnabled, isPassThrough, isPostprocessor, isPreprocessor, loadExample, runPassThrough, setEnabled, setPassThrough, setThreadPool

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, fromJson, fromJsonNode, getAliasIdInParentGraph, getBaseDirectory, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getDependencies, getDisplayName, getEventBus, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getLocations, getLocationWithin, getName, getNewScratch, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProjectCompartment, getProjectDirectory, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isVisibleIn, onDeserialized, onParameterChanged, onParameterStructureChanged, onParameterUIChanged, onSlotConfigurationChanged, onSlotConnected, onSlotDisconnected, registerSubParameter, renderInputSlots, renderOutputSlots, setAllSlotsVirtual, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setLocations, setLocationWithin, setLocationWithin, setParentGraph, setProjectDirectory, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, toggleSlot, toJson, triggerSlotsChangedEvent, updateGraphNodeSlots, updateSlotInheritance

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

addParameterChangeListener, addParameterChangeListener, getContextActions, getParameter, getParameterAccess, setParameter, triggerParameterChange, triggerParameterStructureChange, triggerParameterUIChange

Constructor Detail

RollingBallBackgroundEstimator2DAlgorithm

public RollingBallBackgroundEstimator2DAlgorithm(JIPipeNodeInfo info)

Instantiates a new node type.

Parameters:

info - the info

RollingBallBackgroundEstimator2DAlgorithm

public RollingBallBackgroundEstimator2DAlgorithm(RollingBallBackgroundEstimator2DAlgorithm other)

Instantiates a new node type.

Parameters:

other - the other

Method Detail

runIteration

protected void runIteration(JIPipeDataBatch dataBatch,
                            JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeSimpleIteratingAlgorithm

Runs code on one data row

Specified by:

runIteration in class JIPipeSimpleIteratingAlgorithm

Parameters:

dataBatch - The data interface

progressInfo - the progress info from the run

reportValidity

public void reportValidity(JIPipeIssueReport report)

Description copied from interface: JIPipeValidatable

Generates a validity report

Specified by:

reportValidity in interface JIPipeValidatable

Overrides:

reportValidity in class JIPipeSimpleIteratingAlgorithm

Parameters:

report - the report to be added to

getRadius

public double getRadius()

setRadius

public boolean setRadius(double radius)

isSubtract

public boolean isSubtract()

setSubtract

public void setSubtract(boolean subtract)

getBackgroundType

public RollingBallBackgroundEstimator2DAlgorithm.BackgroundType getBackgroundType()

setBackgroundType

public void setBackgroundType(RollingBallBackgroundEstimator2DAlgorithm.BackgroundType backgroundType)

getMethod

public RollingBallBackgroundEstimator2DAlgorithm.Method getMethod()

setMethod

public void setMethod(RollingBallBackgroundEstimator2DAlgorithm.Method method)

isPreSmoothing

public boolean isPreSmoothing()

setPreSmoothing

public void setPreSmoothing(boolean preSmoothing)

isCorrectCorners

public boolean isCorrectCorners()

setCorrectCorners

public void setCorrectCorners(boolean correctCorners)

isSeparateChannels

public boolean isSeparateChannels()

setSeparateChannels

public void setSeparateChannels(boolean separateChannels)