org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.convert

Class UnreferencedRoiToRGBAlgorithm

java.lang.Object

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.convert.UnreferencedRoiToRGBAlgorithm

All Implemented Interfaces:

JIPipeValidatable, JIPipeAdaptiveParametersAlgorithm, JIPipeDataBatchAlgorithm, JIPipeParallelizedAlgorithm, JIPipeParameterCollection

public class UnreferencedRoiToRGBAlgorithm
extends JIPipeSimpleIteratingAlgorithm

Wrapper around RoiManager

Nested Class Summary

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

JIPipeAlgorithm.StateSerializer

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterUIChangedEvent

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
UnreferencedRoiToRGBAlgorithm(JIPipeNodeInfo info) Instantiates a new node type.
UnreferencedRoiToRGBAlgorithm(UnreferencedRoiToRGBAlgorithm other) Instantiates a new node type.

Method Summary

Modifier and Type	Method and Description
ROIElementDrawingMode	getDrawFilledOutlineMode()
ROIElementDrawingMode	getDrawOutlineMode()
Margin	getImageArea()
OptionalColorParameter	getOverrideFillColor()
OptionalColorParameter	getOverrideLineColor()
OptionalDoubleParameter	getOverrideLineWidth()
boolean	isDrawLabel()
boolean	isDrawOver()
boolean	isIgnoreC()
boolean	isIgnoreT()
boolean	isIgnoreZ()
boolean	isPreferAssociatedImage()
protected void	runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo) Runs code on one data row
void	setDrawFilledOutlineMode(ROIElementDrawingMode drawFilledOutlineMode)
void	setDrawLabel(boolean drawLabel)
void	setDrawOutlineMode(ROIElementDrawingMode drawOutlineMode)
void	setDrawOver(boolean drawOver)
void	setIgnoreC(boolean ignoreC)
void	setIgnoreT(boolean ignoreT)
void	setIgnoreZ(boolean ignoreZ)
void	setImageArea(Margin imageArea)
void	setOverrideFillColor(OptionalColorParameter overrideFillColor)
void	setOverrideLineColor(OptionalColorParameter overrideLineColor)
void	setOverrideLineWidth(OptionalDoubleParameter overrideLineWidth)
void	setPreferAssociatedImage(boolean preferAssociatedImage)

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

generateDataBatchesDryRun, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getParallelizationBatchSize, isParallelizationEnabled, isParameterUIVisible, isParameterUIVisible, reportValidity, runParameterSet, runPassThrough, setParallelizationEnabled, supportsParallelization

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, run

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, canPassThrough, getStateId, getThreadPool, isEnabled, isPassThrough, isPostprocessor, isPreprocessor, loadExample, runPassThrough, setEnabled, setPassThrough, setThreadPool

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, fromJson, fromJsonNode, getAliasIdInParentGraph, getBaseDirectory, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getDependencies, getDisplayName, getEventBus, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getLocations, getLocationWithin, getName, getNewScratch, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProjectCompartment, getProjectDirectory, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isVisibleIn, onDeserialized, onParameterChanged, onParameterStructureChanged, onParameterUIChanged, onSlotConfigurationChanged, onSlotConnected, onSlotDisconnected, registerSubParameter, renderInputSlots, renderOutputSlots, setAllSlotsVirtual, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setLocations, setLocationWithin, setLocationWithin, setParentGraph, setProjectDirectory, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, toggleSlot, toJson, triggerSlotsChangedEvent, updateGraphNodeSlots, updateSlotInheritance

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

addParameterChangeListener, addParameterChangeListener, getContextActions, getParameter, getParameterAccess, setParameter, triggerParameterChange, triggerParameterStructureChange, triggerParameterUIChange

Constructor Detail

UnreferencedRoiToRGBAlgorithm

public UnreferencedRoiToRGBAlgorithm(JIPipeNodeInfo info)

Instantiates a new node type.

Parameters:

info - the info

UnreferencedRoiToRGBAlgorithm

public UnreferencedRoiToRGBAlgorithm(UnreferencedRoiToRGBAlgorithm other)

Instantiates a new node type.

Parameters:

other - the other

Method Detail

isPreferAssociatedImage

public boolean isPreferAssociatedImage()

setPreferAssociatedImage

public void setPreferAssociatedImage(boolean preferAssociatedImage)

runIteration

protected void runIteration(JIPipeDataBatch dataBatch,
                            JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeSimpleIteratingAlgorithm

Runs code on one data row

Specified by:

runIteration in class JIPipeSimpleIteratingAlgorithm

Parameters:

dataBatch - The data interface

progressInfo - the progress info from the run

getImageArea

public Margin getImageArea()

setImageArea

public void setImageArea(Margin imageArea)

getDrawOutlineMode

public ROIElementDrawingMode getDrawOutlineMode()

setDrawOutlineMode

public void setDrawOutlineMode(ROIElementDrawingMode drawOutlineMode)

getDrawFilledOutlineMode

public ROIElementDrawingMode getDrawFilledOutlineMode()

setDrawFilledOutlineMode

public void setDrawFilledOutlineMode(ROIElementDrawingMode drawFilledOutlineMode)

getOverrideFillColor

public OptionalColorParameter getOverrideFillColor()

setOverrideFillColor

public void setOverrideFillColor(OptionalColorParameter overrideFillColor)

getOverrideLineColor

public OptionalColorParameter getOverrideLineColor()

setOverrideLineColor

public void setOverrideLineColor(OptionalColorParameter overrideLineColor)

getOverrideLineWidth

public OptionalDoubleParameter getOverrideLineWidth()

setOverrideLineWidth

public void setOverrideLineWidth(OptionalDoubleParameter overrideLineWidth)

isDrawLabel

public boolean isDrawLabel()

setDrawLabel

public void setDrawLabel(boolean drawLabel)

isDrawOver

public boolean isDrawOver()

setDrawOver

public void setDrawOver(boolean drawOver)

isIgnoreZ

public boolean isIgnoreZ()

setIgnoreZ

public void setIgnoreZ(boolean ignoreZ)

isIgnoreC

public boolean isIgnoreC()

setIgnoreC

public void setIgnoreC(boolean ignoreC)

isIgnoreT

public boolean isIgnoreT()

setIgnoreT

public void setIgnoreT(boolean ignoreT)