org.hkijena.jipipe.extensions.ijmultitemplatematching

Class MultiTemplateMatchingAlgorithm

java.lang.Object

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm

org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

All Implemented Interfaces:

JIPipeValidatable, JIPipeAdaptiveParametersAlgorithm, JIPipeDataBatchAlgorithm, JIPipeParallelizedAlgorithm, JIPipeParameterCollection

public class MultiTemplateMatchingAlgorithm
extends JIPipeMergingAlgorithm

Nested Class Summary

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

JIPipeAlgorithm.StateSerializer

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterUIChangedEvent

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
MultiTemplateMatchingAlgorithm(JIPipeNodeInfo info)
MultiTemplateMatchingAlgorithm(MultiTemplateMatchingAlgorithm other)

Method Summary

Modifier and Type	Method and Description
void	generateRotations(JIPipeWorkbench workbench)
OptionalColorParameter	getAssembleTemplatesBackground()
OptionalDataInfoRefParameter	getAssembleTemplatesOutput()
int	getExpectedNumberOfObjects()
double	getMultiObjectMaximumBoundingBoxOverlap()
double	getMultiObjectScoreThreshold()
IntegerRange	getRotateTemplate()
TemplateMatchingMethod	getTemplateMatchingMethod()
boolean	isAssembleTemplates()
boolean	isFlipTemplateHorizontally()
boolean	isFlipTemplateVertically()
boolean	isRestrictToROI()
boolean	isWithNonMaximaSuppression()
protected void	runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo) Runs code on one data row
void	setAssembleTemplates(boolean assembleTemplates)
void	setAssembleTemplatesBackground(OptionalColorParameter assembleTemplatesBackground)
void	setAssembleTemplatesOutput(OptionalDataInfoRefParameter assembleTemplatesOutput)
boolean	setExpectedNumberOfObjects(int expectedNumberOfObjects)
void	setFlipTemplateHorizontally(boolean flipTemplateHorizontally)
void	setFlipTemplateVertically(boolean flipTemplateVertically)
boolean	setMultiObjectMaximumBoundingBoxOverlap(double multiObjectMaximumBoundingBoxOverlap)
boolean	setMultiObjectScoreThreshold(double multiObjectScoreThreshold)
void	setRestrictToROI(boolean restrictToROI)
void	setRotateTemplate(IntegerRange rotateTemplate)
void	setTemplateMatchingMethod(TemplateMatchingMethod templateMatchingMethod)
void	setWithNonMaximaSuppression(boolean withNonMaximaSuppression)

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm

generateDataBatchesDryRun, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getIgnoredAnnotationColumns, getParallelizationBatchSize, isParallelizationEnabled, isParameterUIVisible, isParameterUIVisible, runParameterSet, runPassThrough, setParallelizationEnabled, supportsParallelization

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, run

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, canPassThrough, getStateId, getThreadPool, isEnabled, isPassThrough, isPostprocessor, isPreprocessor, loadExample, reportValidity, runPassThrough, setEnabled, setPassThrough, setThreadPool

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, fromJson, fromJsonNode, getAliasIdInParentGraph, getBaseDirectory, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getDependencies, getDisplayName, getEventBus, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getLocations, getLocationWithin, getName, getNewScratch, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProjectCompartment, getProjectDirectory, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isVisibleIn, onDeserialized, onParameterChanged, onParameterStructureChanged, onParameterUIChanged, onSlotConfigurationChanged, onSlotConnected, onSlotDisconnected, registerSubParameter, renderInputSlots, renderOutputSlots, setAllSlotsVirtual, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setLocations, setLocationWithin, setLocationWithin, setParentGraph, setProjectDirectory, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, toggleSlot, toJson, triggerSlotsChangedEvent, updateGraphNodeSlots, updateSlotInheritance

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

addParameterChangeListener, addParameterChangeListener, getContextActions, getParameter, getParameterAccess, setParameter, triggerParameterChange, triggerParameterStructureChange, triggerParameterUIChange

Constructor Detail

MultiTemplateMatchingAlgorithm

public MultiTemplateMatchingAlgorithm(JIPipeNodeInfo info)

MultiTemplateMatchingAlgorithm

public MultiTemplateMatchingAlgorithm(MultiTemplateMatchingAlgorithm other)

Method Detail

runIteration

protected void runIteration(JIPipeMergingDataBatch dataBatch,
                            JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeMergingAlgorithm

Runs code on one data row

Specified by:

runIteration in class JIPipeMergingAlgorithm

Parameters:

dataBatch - The data interface

progressInfo - the progress from the run

isFlipTemplateVertically

public boolean isFlipTemplateVertically()

setFlipTemplateVertically

public void setFlipTemplateVertically(boolean flipTemplateVertically)

isFlipTemplateHorizontally

public boolean isFlipTemplateHorizontally()

setFlipTemplateHorizontally

public void setFlipTemplateHorizontally(boolean flipTemplateHorizontally)

getRotateTemplate

public IntegerRange getRotateTemplate()

setRotateTemplate

public void setRotateTemplate(IntegerRange rotateTemplate)

getTemplateMatchingMethod

public TemplateMatchingMethod getTemplateMatchingMethod()

setTemplateMatchingMethod

public void setTemplateMatchingMethod(TemplateMatchingMethod templateMatchingMethod)

isWithNonMaximaSuppression

public boolean isWithNonMaximaSuppression()

setWithNonMaximaSuppression

public void setWithNonMaximaSuppression(boolean withNonMaximaSuppression)

getExpectedNumberOfObjects

public int getExpectedNumberOfObjects()

setExpectedNumberOfObjects

public boolean setExpectedNumberOfObjects(int expectedNumberOfObjects)

getMultiObjectScoreThreshold

public double getMultiObjectScoreThreshold()

setMultiObjectScoreThreshold

public boolean setMultiObjectScoreThreshold(double multiObjectScoreThreshold)

getMultiObjectMaximumBoundingBoxOverlap

public double getMultiObjectMaximumBoundingBoxOverlap()

setMultiObjectMaximumBoundingBoxOverlap

public boolean setMultiObjectMaximumBoundingBoxOverlap(double multiObjectMaximumBoundingBoxOverlap)

isRestrictToROI

public boolean isRestrictToROI()

setRestrictToROI

public void setRestrictToROI(boolean restrictToROI)

generateRotations

public void generateRotations(JIPipeWorkbench workbench)

isAssembleTemplates

public boolean isAssembleTemplates()

setAssembleTemplates

public void setAssembleTemplates(boolean assembleTemplates)

getAssembleTemplatesBackground

public OptionalColorParameter getAssembleTemplatesBackground()

setAssembleTemplatesBackground

public void setAssembleTemplatesBackground(OptionalColorParameter assembleTemplatesBackground)

getAssembleTemplatesOutput

public OptionalDataInfoRefParameter getAssembleTemplatesOutput()

setAssembleTemplatesOutput

public void setAssembleTemplatesOutput(OptionalDataInfoRefParameter assembleTemplatesOutput)