org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.assemble

Class ExtractFromROIAlgorithm

java.lang.Object

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.assemble.ExtractFromROIAlgorithm

All Implemented Interfaces:

JIPipeValidatable, JIPipeAdaptiveParametersAlgorithm, JIPipeDataBatchAlgorithm, JIPipeParallelizedAlgorithm, JIPipeParameterCollection

public class ExtractFromROIAlgorithm
extends JIPipeIteratingAlgorithm

Nested Class Summary

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

JIPipeAlgorithm.StateSerializer

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterUIChangedEvent

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
ExtractFromROIAlgorithm(ExtractFromROIAlgorithm other)
ExtractFromROIAlgorithm(JIPipeNodeInfo info)

Method Summary

Modifier and Type	Method and Description
OptionalAnnotationNameParameter	getAnnotationBoundingHeight()
OptionalAnnotationNameParameter	getAnnotationBoundingWidth()
OptionalAnnotationNameParameter	getAnnotationC()
JIPipeTextAnnotationMergeMode	getAnnotationMergeStrategy()
OptionalAnnotationNameParameter	getAnnotationT()
OptionalAnnotationNameParameter	getAnnotationX()
OptionalAnnotationNameParameter	getAnnotationY()
OptionalAnnotationNameParameter	getAnnotationZ()
OptionalColorParameter	getOutsideColor()
Anchor	getXyAnchor()
protected void	runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo) Runs code on one data row
void	setAnnotationBoundingHeight(OptionalAnnotationNameParameter annotationBoundingHeight)
void	setAnnotationBoundingWidth(OptionalAnnotationNameParameter annotationBoundingWidth)
void	setAnnotationC(OptionalAnnotationNameParameter annotationC)
void	setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	setAnnotationT(OptionalAnnotationNameParameter annotationT)
void	setAnnotationX(OptionalAnnotationNameParameter annotationX)
void	setAnnotationY(OptionalAnnotationNameParameter annotationY)
void	setAnnotationZ(OptionalAnnotationNameParameter annotationZ)
void	setOutsideColor(OptionalColorParameter outsideColor)
void	setXyAnchor(Anchor xyAnchor)

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

generateDataBatchesDryRun, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getParallelizationBatchSize, isParallelizationEnabled, isParameterUIVisible, isParameterUIVisible, runParameterSet, runPassThrough, setParallelizationEnabled, supportsParallelization

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, run

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, canPassThrough, getStateId, getThreadPool, isEnabled, isPassThrough, isPostprocessor, isPreprocessor, loadExample, reportValidity, runPassThrough, setEnabled, setPassThrough, setThreadPool

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, fromJson, fromJsonNode, getAliasIdInParentGraph, getBaseDirectory, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getDependencies, getDisplayName, getEventBus, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getLocations, getLocationWithin, getName, getNewScratch, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProjectCompartment, getProjectDirectory, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isVisibleIn, onDeserialized, onParameterChanged, onParameterStructureChanged, onParameterUIChanged, onSlotConfigurationChanged, onSlotConnected, onSlotDisconnected, registerSubParameter, renderInputSlots, renderOutputSlots, setAllSlotsVirtual, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setLocations, setLocationWithin, setLocationWithin, setParentGraph, setProjectDirectory, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, toggleSlot, toJson, triggerSlotsChangedEvent, updateGraphNodeSlots, updateSlotInheritance

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

addParameterChangeListener, addParameterChangeListener, getContextActions, getParameter, getParameterAccess, setParameter, triggerParameterChange, triggerParameterStructureChange, triggerParameterUIChange

Constructor Detail

ExtractFromROIAlgorithm

public ExtractFromROIAlgorithm(JIPipeNodeInfo info)

ExtractFromROIAlgorithm

public ExtractFromROIAlgorithm(ExtractFromROIAlgorithm other)

Method Detail

runIteration

protected void runIteration(JIPipeDataBatch dataBatch,
                            JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeIteratingAlgorithm

Runs code on one data row

Specified by:

runIteration in class JIPipeIteratingAlgorithm

Parameters:

dataBatch - The data interface

progressInfo - the progress info from the run

getOutsideColor

public OptionalColorParameter getOutsideColor()

setOutsideColor

public void setOutsideColor(OptionalColorParameter outsideColor)

getAnnotationX

public OptionalAnnotationNameParameter getAnnotationX()

setAnnotationX

public void setAnnotationX(OptionalAnnotationNameParameter annotationX)

getAnnotationY

public OptionalAnnotationNameParameter getAnnotationY()

setAnnotationY

public void setAnnotationY(OptionalAnnotationNameParameter annotationY)

getAnnotationZ

public OptionalAnnotationNameParameter getAnnotationZ()

setAnnotationZ

public void setAnnotationZ(OptionalAnnotationNameParameter annotationZ)

getAnnotationC

public OptionalAnnotationNameParameter getAnnotationC()

setAnnotationC

public void setAnnotationC(OptionalAnnotationNameParameter annotationC)

getAnnotationT

public OptionalAnnotationNameParameter getAnnotationT()

setAnnotationT

public void setAnnotationT(OptionalAnnotationNameParameter annotationT)

getXyAnchor

public Anchor getXyAnchor()

setXyAnchor

public void setXyAnchor(Anchor xyAnchor)

getAnnotationBoundingWidth

public OptionalAnnotationNameParameter getAnnotationBoundingWidth()

setAnnotationBoundingWidth

public void setAnnotationBoundingWidth(OptionalAnnotationNameParameter annotationBoundingWidth)

getAnnotationBoundingHeight

public OptionalAnnotationNameParameter getAnnotationBoundingHeight()

setAnnotationBoundingHeight

public void setAnnotationBoundingHeight(OptionalAnnotationNameParameter annotationBoundingHeight)

getAnnotationMergeStrategy

public JIPipeTextAnnotationMergeMode getAnnotationMergeStrategy()

setAnnotationMergeStrategy

public void setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)