org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.assemble

Class AssembleExtractedROIAlgorithm

java.lang.Object

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.assemble.AssembleExtractedROIAlgorithm

All Implemented Interfaces:

JIPipeValidatable, JIPipeAdaptiveParametersAlgorithm, JIPipeDataBatchAlgorithm, JIPipeParallelizedAlgorithm, JIPipeParameterCollection

public class AssembleExtractedROIAlgorithm
extends JIPipeMergingAlgorithm

Nested Class Summary

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

JIPipeAlgorithm.StateSerializer

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterUIChangedEvent

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
AssembleExtractedROIAlgorithm(AssembleExtractedROIAlgorithm other)
AssembleExtractedROIAlgorithm(JIPipeNodeInfo info)

Method Summary

Modifier and Type	Method and Description
OptionalStringParameter	getAnnotationC()
OptionalStringParameter	getAnnotationT()
String	getAnnotationX()
String	getAnnotationY()
OptionalStringParameter	getAnnotationZ()
Anchor	getXyAnchor()
boolean	isDoScaling()
protected void	runIteration(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo) Runs code on one data row
void	setAnnotationC(OptionalStringParameter annotationC)
void	setAnnotationT(OptionalStringParameter annotationT)
void	setAnnotationX(String annotationX)
void	setAnnotationY(String annotationY)
void	setAnnotationZ(OptionalStringParameter annotationZ)
void	setDoScaling(boolean doScaling)
void	setXyAnchor(Anchor xyAnchor)

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm

generateDataBatchesDryRun, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getIgnoredAnnotationColumns, getParallelizationBatchSize, isParallelizationEnabled, isParameterUIVisible, isParameterUIVisible, runParameterSet, runPassThrough, setParallelizationEnabled, supportsParallelization

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, run

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, canPassThrough, getStateId, getThreadPool, isEnabled, isPassThrough, isPostprocessor, isPreprocessor, loadExample, reportValidity, runPassThrough, setEnabled, setPassThrough, setThreadPool

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, fromJson, fromJsonNode, getAliasIdInParentGraph, getBaseDirectory, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getDependencies, getDisplayName, getEventBus, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getLocations, getLocationWithin, getName, getNewScratch, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProjectCompartment, getProjectDirectory, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isVisibleIn, onDeserialized, onParameterChanged, onParameterStructureChanged, onParameterUIChanged, onSlotConfigurationChanged, onSlotConnected, onSlotDisconnected, registerSubParameter, renderInputSlots, renderOutputSlots, setAllSlotsVirtual, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setLocations, setLocationWithin, setLocationWithin, setParentGraph, setProjectDirectory, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, toggleSlot, toJson, triggerSlotsChangedEvent, updateGraphNodeSlots, updateSlotInheritance

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

addParameterChangeListener, addParameterChangeListener, getContextActions, getParameter, getParameterAccess, setParameter, triggerParameterChange, triggerParameterStructureChange, triggerParameterUIChange

Constructor Detail

AssembleExtractedROIAlgorithm

public AssembleExtractedROIAlgorithm(JIPipeNodeInfo info)

AssembleExtractedROIAlgorithm

public AssembleExtractedROIAlgorithm(AssembleExtractedROIAlgorithm other)

Method Detail

runIteration

protected void runIteration(JIPipeMergingDataBatch dataBatch,
                            JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeMergingAlgorithm

Runs code on one data row

Specified by:

runIteration in class JIPipeMergingAlgorithm

Parameters:

dataBatch - The data interface

progressInfo - the progress from the run

getAnnotationX

public String getAnnotationX()

setAnnotationX

public void setAnnotationX(String annotationX)

getAnnotationY

public String getAnnotationY()

setAnnotationY

public void setAnnotationY(String annotationY)

getAnnotationZ

public OptionalStringParameter getAnnotationZ()

setAnnotationZ

public void setAnnotationZ(OptionalStringParameter annotationZ)

getAnnotationC

public OptionalStringParameter getAnnotationC()

setAnnotationC

public void setAnnotationC(OptionalStringParameter annotationC)

getAnnotationT

public OptionalStringParameter getAnnotationT()

setAnnotationT

public void setAnnotationT(OptionalStringParameter annotationT)

getXyAnchor

public Anchor getXyAnchor()

setXyAnchor

public void setXyAnchor(Anchor xyAnchor)

isDoScaling

public boolean isDoScaling()

setDoScaling

public void setDoScaling(boolean doScaling)