org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.measure

Class RoiStatisticsAlgorithm

java.lang.Object

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.measure.RoiStatisticsAlgorithm

All Implemented Interfaces:

JIPipeValidatable, JIPipeAdaptiveParametersAlgorithm, JIPipeDataBatchAlgorithm, JIPipeParallelizedAlgorithm, JIPipeParameterCollection

public class RoiStatisticsAlgorithm
extends JIPipeIteratingAlgorithm

Wrapper around RoiManager

Nested Class Summary

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

JIPipeAlgorithm.StateSerializer

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterUIChangedEvent

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
RoiStatisticsAlgorithm(JIPipeNodeInfo info) Instantiates a new node type.
RoiStatisticsAlgorithm(RoiStatisticsAlgorithm other) Instantiates a new node type.

Method Summary

Modifier and Type	Method and Description
OptionalStringParameter	getIndexAnnotation()
ImageStatisticsSetParameter	getMeasurements()
boolean	isAddNameToTable()
boolean	isApplyPerChannel()
boolean	isApplyPerFrame()
boolean	isApplyPerSlice()
boolean	isMeasureInPhysicalUnits()
protected void	runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo) Runs code on one data row
void	setAddNameToTable(boolean addNameToTable)
void	setApplyPerChannel(boolean applyPerChannel)
void	setApplyPerFrame(boolean applyPerFrame)
void	setApplyPerSlice(boolean applyPerSlice)
void	setIndexAnnotation(OptionalStringParameter indexAnnotation)
void	setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	setMeasurements(ImageStatisticsSetParameter measurements)

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

generateDataBatchesDryRun, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getParallelizationBatchSize, isParallelizationEnabled, isParameterUIVisible, isParameterUIVisible, runParameterSet, runPassThrough, setParallelizationEnabled, supportsParallelization

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, run

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, canPassThrough, getStateId, getThreadPool, isEnabled, isPassThrough, isPostprocessor, isPreprocessor, loadExample, reportValidity, runPassThrough, setEnabled, setPassThrough, setThreadPool

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, fromJson, fromJsonNode, getAliasIdInParentGraph, getBaseDirectory, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getDependencies, getDisplayName, getEventBus, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getLocations, getLocationWithin, getName, getNewScratch, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProjectCompartment, getProjectDirectory, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isVisibleIn, onDeserialized, onParameterChanged, onParameterStructureChanged, onParameterUIChanged, onSlotConfigurationChanged, onSlotConnected, onSlotDisconnected, registerSubParameter, renderInputSlots, renderOutputSlots, setAllSlotsVirtual, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setLocations, setLocationWithin, setLocationWithin, setParentGraph, setProjectDirectory, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, toggleSlot, toJson, triggerSlotsChangedEvent, updateGraphNodeSlots, updateSlotInheritance

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

addParameterChangeListener, addParameterChangeListener, getContextActions, getParameter, getParameterAccess, setParameter, triggerParameterChange, triggerParameterStructureChange, triggerParameterUIChange

Constructor Detail

RoiStatisticsAlgorithm

public RoiStatisticsAlgorithm(JIPipeNodeInfo info)

Instantiates a new node type.

Parameters:

info - the info

RoiStatisticsAlgorithm

public RoiStatisticsAlgorithm(RoiStatisticsAlgorithm other)

Instantiates a new node type.

Parameters:

other - the other

Method Detail

runIteration

protected void runIteration(JIPipeDataBatch dataBatch,
                            JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeIteratingAlgorithm

Runs code on one data row

Specified by:

runIteration in class JIPipeIteratingAlgorithm

Parameters:

dataBatch - The data interface

progressInfo - the progress info from the run

getMeasurements

public ImageStatisticsSetParameter getMeasurements()

setMeasurements

public void setMeasurements(ImageStatisticsSetParameter measurements)

getIndexAnnotation

public OptionalStringParameter getIndexAnnotation()

setIndexAnnotation

public void setIndexAnnotation(OptionalStringParameter indexAnnotation)

isApplyPerSlice

public boolean isApplyPerSlice()

setApplyPerSlice

public void setApplyPerSlice(boolean applyPerSlice)

isApplyPerChannel

public boolean isApplyPerChannel()

setApplyPerChannel

public void setApplyPerChannel(boolean applyPerChannel)

isApplyPerFrame

public boolean isApplyPerFrame()

setApplyPerFrame

public void setApplyPerFrame(boolean applyPerFrame)

isAddNameToTable

public boolean isAddNameToTable()

setAddNameToTable

public void setAddNameToTable(boolean addNameToTable)

isMeasureInPhysicalUnits

public boolean isMeasureInPhysicalUnits()

setMeasureInPhysicalUnits

public void setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)