org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate

Class GenerateMissingImageFromMathExpression2D

java.lang.Object

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeMissingDataGeneratorAlgorithm

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.GenerateMissingImageFromMathExpression2D

All Implemented Interfaces:

JIPipeValidatable, JIPipeDataBatchAlgorithm, JIPipeParallelizedAlgorithm, JIPipeParameterCollection

public class GenerateMissingImageFromMathExpression2D
extends JIPipeMissingDataGeneratorAlgorithm

Wrapper around ImageProcessor

Nested Class Summary

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

JIPipeAlgorithm.StateSerializer

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterUIChangedEvent

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
GenerateMissingImageFromMathExpression2D(GenerateMissingImageFromMathExpression2D other) Instantiates a new node type.
GenerateMissingImageFromMathExpression2D(JIPipeNodeInfo info) Instantiates a new node type.

Method Summary

Modifier and Type	Method and Description
DefaultExpressionParameter	getFunction()
OptionalIntegerParameter	getOverwriteHeight()
OptionalBitDepth	getOverwriteOutputBitDepth()
OptionalIntegerParameter	getOverwriteSizeC()
OptionalIntegerParameter	getOverwriteSizeT()
OptionalIntegerParameter	getOverwriteSizeZ()
OptionalIntegerParameter	getOverwriteWidth()
boolean	isGenerateOnePerBatch()
protected void	runGenerator(JIPipeMergingDataBatch dataBatch, JIPipeDataSlot inputSlot, JIPipeDataSlot outputSlot, JIPipeProgressInfo progressInfo) Generates data and puts the output into the specified output slot
void	setFunction(DefaultExpressionParameter transformation)
void	setGenerateOnePerBatch(boolean generateOnePerBatch)
void	setOverwriteHeight(OptionalIntegerParameter overwriteHeight)
void	setOverwriteOutputBitDepth(OptionalBitDepth overwriteOutputBitDepth)
void	setOverwriteSizeC(OptionalIntegerParameter overwriteSizeC)
void	setOverwriteSizeT(OptionalIntegerParameter overwriteSizeT)
void	setOverwriteSizeZ(OptionalIntegerParameter overwriteSizeZ)
void	setOverwriteWidth(OptionalIntegerParameter overwriteWidth)
boolean	supportsParallelization() Indicates to the algorithm base implementation if parallelization is supported.

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeMissingDataGeneratorAlgorithm

generateDataBatchesDryRun, getCorrespondingOutputSlot, getDataBatchGenerationSettings, getGenerationSettingsInterface, getParallelizationBatchSize, isKeepOriginalAnnotations, isParallelizationEnabled, isParameterUIVisible, runIteration, runParameterSet, setKeepOriginalAnnotations, setParallelizationEnabled

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, isParameterUIVisible, run

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, canPassThrough, getStateId, getThreadPool, isEnabled, isPassThrough, isPostprocessor, isPreprocessor, loadExample, reportValidity, runPassThrough, setEnabled, setPassThrough, setThreadPool

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, fromJson, fromJsonNode, getAliasIdInParentGraph, getBaseDirectory, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getDependencies, getDisplayName, getEventBus, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getLocations, getLocationWithin, getName, getNewScratch, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProjectCompartment, getProjectDirectory, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isVisibleIn, onDeserialized, onParameterChanged, onParameterStructureChanged, onParameterUIChanged, onSlotConfigurationChanged, onSlotConnected, onSlotDisconnected, registerSubParameter, renderInputSlots, renderOutputSlots, setAllSlotsVirtual, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setLocations, setLocationWithin, setLocationWithin, setParentGraph, setProjectDirectory, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, toggleSlot, toJson, triggerSlotsChangedEvent, updateGraphNodeSlots, updateSlotInheritance

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

addParameterChangeListener, addParameterChangeListener, getContextActions, getParameter, getParameterAccess, setParameter, triggerParameterChange, triggerParameterStructureChange, triggerParameterUIChange

Constructor Detail

GenerateMissingImageFromMathExpression2D

public GenerateMissingImageFromMathExpression2D(JIPipeNodeInfo info)

Instantiates a new node type.

Parameters:

info - the info

GenerateMissingImageFromMathExpression2D

public GenerateMissingImageFromMathExpression2D(GenerateMissingImageFromMathExpression2D other)

Instantiates a new node type.

Parameters:

other - the other

Method Detail

supportsParallelization

public boolean supportsParallelization()

Description copied from interface: JIPipeParallelizedAlgorithm

Indicates to the algorithm base implementation if parallelization is supported. Use this function to indicate to the algorithm to conditionally enable/disable parallelization.

Specified by:

supportsParallelization in interface JIPipeParallelizedAlgorithm

Overrides:

supportsParallelization in class JIPipeMissingDataGeneratorAlgorithm

Returns:

If the algorithm supports automated parallelization.

runGenerator

protected void runGenerator(JIPipeMergingDataBatch dataBatch,
                            JIPipeDataSlot inputSlot,
                            JIPipeDataSlot outputSlot,
                            JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeMissingDataGeneratorAlgorithm

Generates data and puts the output into the specified output slot

Specified by:

runGenerator in class JIPipeMissingDataGeneratorAlgorithm

Parameters:

dataBatch - the data batch

inputSlot - the input slot that should be generated. Please note that it does not contain any data for this batch.

outputSlot - the output slot where data should be put.

progressInfo - the progress info

isGenerateOnePerBatch

public boolean isGenerateOnePerBatch()

setGenerateOnePerBatch

public void setGenerateOnePerBatch(boolean generateOnePerBatch)

getOverwriteOutputBitDepth

public OptionalBitDepth getOverwriteOutputBitDepth()

setOverwriteOutputBitDepth

public void setOverwriteOutputBitDepth(OptionalBitDepth overwriteOutputBitDepth)

getFunction

public DefaultExpressionParameter getFunction()

setFunction

public void setFunction(DefaultExpressionParameter transformation)

getOverwriteWidth

public OptionalIntegerParameter getOverwriteWidth()

setOverwriteWidth

public void setOverwriteWidth(OptionalIntegerParameter overwriteWidth)

getOverwriteHeight

public OptionalIntegerParameter getOverwriteHeight()

setOverwriteHeight

public void setOverwriteHeight(OptionalIntegerParameter overwriteHeight)

getOverwriteSizeZ

public OptionalIntegerParameter getOverwriteSizeZ()

setOverwriteSizeZ

public void setOverwriteSizeZ(OptionalIntegerParameter overwriteSizeZ)

getOverwriteSizeC

public OptionalIntegerParameter getOverwriteSizeC()

setOverwriteSizeC

public void setOverwriteSizeC(OptionalIntegerParameter overwriteSizeC)

getOverwriteSizeT

public OptionalIntegerParameter getOverwriteSizeT()

setOverwriteSizeT

public void setOverwriteSizeT(OptionalIntegerParameter overwriteSizeT)