org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform

Class TileImage2DAlgorithm

java.lang.Object

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TileImage2DAlgorithm

All Implemented Interfaces:

JIPipeValidatable, JIPipeAdaptiveParametersAlgorithm, JIPipeDataBatchAlgorithm, JIPipeParallelizedAlgorithm, JIPipeParameterCollection

public class TileImage2DAlgorithm
extends JIPipeSimpleIteratingAlgorithm

Nested Class Summary

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

JIPipeAlgorithm.StateSerializer

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterUIChangedEvent

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
TileImage2DAlgorithm(JIPipeNodeInfo info)
TileImage2DAlgorithm(TileImage2DAlgorithm other)

Method Summary

Modifier and Type	Method and Description
JIPipeTextAnnotationMergeMode	getAnnotationMergeStrategy()
BorderMode	getBorderMode()
OptionalAnnotationNameParameter	getImageHeightAnnotation()
OptionalAnnotationNameParameter	getImageWidthAnnotation()
OptionalAnnotationNameParameter	getNumTilesX()
OptionalAnnotationNameParameter	getNumTilesY()
int	getOverlapX()
int	getOverlapY()
OptionalAnnotationNameParameter	getTileInsetXAnnotation()
OptionalAnnotationNameParameter	getTileInsetYAnnotation()
OptionalAnnotationNameParameter	getTileRealXAnnotation()
OptionalAnnotationNameParameter	getTileRealYAnnotation()
int	getTileSizeX()
int	getTileSizeY()
OptionalAnnotationNameParameter	getTileXAnnotation()
OptionalAnnotationNameParameter	getTileYAnnotation()
void	reportValidity(JIPipeIssueReport report) Generates a validity report
protected void	runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo) Runs code on one data row
void	setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	setBorderMode(BorderMode borderMode)
void	setImageHeightAnnotation(OptionalAnnotationNameParameter imageHeightAnnotation)
void	setImageWidthAnnotation(OptionalAnnotationNameParameter imageWidthAnnotation)
void	setNumTilesX(OptionalAnnotationNameParameter numTilesX)
void	setNumTilesY(OptionalAnnotationNameParameter numTilesY)
boolean	setOverlapX(int overlapX)
void	setOverlapY(int overlapY)
void	setTileInsetXAnnotation(OptionalAnnotationNameParameter tileInsetXAnnotation)
void	setTileInsetYAnnotation(OptionalAnnotationNameParameter tileInsetYAnnotation)
void	setTileRealXAnnotation(OptionalAnnotationNameParameter tileRealXAnnotation)
void	setTileRealYAnnotation(OptionalAnnotationNameParameter tileRealYAnnotation)
void	setTileSizeX(int tileSizeX)
void	setTileSizeY(int tileSizeY)
void	setTileXAnnotation(OptionalAnnotationNameParameter tileXAnnotation)
void	setTileYAnnotation(OptionalAnnotationNameParameter tileYAnnotation)

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

generateDataBatchesDryRun, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getParallelizationBatchSize, isParallelizationEnabled, isParameterUIVisible, isParameterUIVisible, runParameterSet, runPassThrough, setParallelizationEnabled, supportsParallelization

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, run

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, canPassThrough, getStateId, getThreadPool, isEnabled, isPassThrough, isPostprocessor, isPreprocessor, loadExample, runPassThrough, setEnabled, setPassThrough, setThreadPool

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, fromJson, fromJsonNode, getAliasIdInParentGraph, getBaseDirectory, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getDependencies, getDisplayName, getEventBus, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getLocations, getLocationWithin, getName, getNewScratch, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProjectCompartment, getProjectDirectory, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isVisibleIn, onDeserialized, onParameterChanged, onParameterStructureChanged, onParameterUIChanged, onSlotConfigurationChanged, onSlotConnected, onSlotDisconnected, registerSubParameter, renderInputSlots, renderOutputSlots, setAllSlotsVirtual, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setLocations, setLocationWithin, setLocationWithin, setParentGraph, setProjectDirectory, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, toggleSlot, toJson, triggerSlotsChangedEvent, updateGraphNodeSlots, updateSlotInheritance

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

addParameterChangeListener, addParameterChangeListener, getContextActions, getParameter, getParameterAccess, setParameter, triggerParameterChange, triggerParameterStructureChange, triggerParameterUIChange

Constructor Detail

TileImage2DAlgorithm

public TileImage2DAlgorithm(JIPipeNodeInfo info)

TileImage2DAlgorithm

public TileImage2DAlgorithm(TileImage2DAlgorithm other)

Method Detail

runIteration

protected void runIteration(JIPipeDataBatch dataBatch,
                            JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeSimpleIteratingAlgorithm

Runs code on one data row

Specified by:

runIteration in class JIPipeSimpleIteratingAlgorithm

Parameters:

dataBatch - The data interface

progressInfo - the progress info from the run

getAnnotationMergeStrategy

public JIPipeTextAnnotationMergeMode getAnnotationMergeStrategy()

setAnnotationMergeStrategy

public void setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)

reportValidity

public void reportValidity(JIPipeIssueReport report)

Description copied from interface: JIPipeValidatable

Generates a validity report

Specified by:

reportValidity in interface JIPipeValidatable

Overrides:

reportValidity in class JIPipeSimpleIteratingAlgorithm

Parameters:

report - the report to be added to

getTileXAnnotation

public OptionalAnnotationNameParameter getTileXAnnotation()

setTileXAnnotation

public void setTileXAnnotation(OptionalAnnotationNameParameter tileXAnnotation)

getTileYAnnotation

public OptionalAnnotationNameParameter getTileYAnnotation()

setTileYAnnotation

public void setTileYAnnotation(OptionalAnnotationNameParameter tileYAnnotation)

getNumTilesX

public OptionalAnnotationNameParameter getNumTilesX()

setNumTilesX

public void setNumTilesX(OptionalAnnotationNameParameter numTilesX)

getNumTilesY

public OptionalAnnotationNameParameter getNumTilesY()

setNumTilesY

public void setNumTilesY(OptionalAnnotationNameParameter numTilesY)

getTileSizeX

public int getTileSizeX()

setTileSizeX

public void setTileSizeX(int tileSizeX)

getTileSizeY

public int getTileSizeY()

setTileSizeY

public void setTileSizeY(int tileSizeY)

getTileRealXAnnotation

public OptionalAnnotationNameParameter getTileRealXAnnotation()

setTileRealXAnnotation

public void setTileRealXAnnotation(OptionalAnnotationNameParameter tileRealXAnnotation)

getTileRealYAnnotation

public OptionalAnnotationNameParameter getTileRealYAnnotation()

setTileRealYAnnotation

public void setTileRealYAnnotation(OptionalAnnotationNameParameter tileRealYAnnotation)

getImageWidthAnnotation

public OptionalAnnotationNameParameter getImageWidthAnnotation()

setImageWidthAnnotation

public void setImageWidthAnnotation(OptionalAnnotationNameParameter imageWidthAnnotation)

getImageHeightAnnotation

public OptionalAnnotationNameParameter getImageHeightAnnotation()

setImageHeightAnnotation

public void setImageHeightAnnotation(OptionalAnnotationNameParameter imageHeightAnnotation)

getOverlapX

public int getOverlapX()

setOverlapX

public boolean setOverlapX(int overlapX)

getOverlapY

public int getOverlapY()

setOverlapY

public void setOverlapY(int overlapY)

getTileInsetXAnnotation

public OptionalAnnotationNameParameter getTileInsetXAnnotation()

setTileInsetXAnnotation

public void setTileInsetXAnnotation(OptionalAnnotationNameParameter tileInsetXAnnotation)

getTileInsetYAnnotation

public OptionalAnnotationNameParameter getTileInsetYAnnotation()

setTileInsetYAnnotation

public void setTileInsetYAnnotation(OptionalAnnotationNameParameter tileInsetYAnnotation)

getBorderMode

public BorderMode getBorderMode()

setBorderMode

public void setBorderMode(BorderMode borderMode)