org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast

Class HistogramContrastEnhancerAlgorithm

java.lang.Object

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.HistogramContrastEnhancerAlgorithm

All Implemented Interfaces:

JIPipeValidatable, JIPipeAdaptiveParametersAlgorithm, JIPipeDataBatchAlgorithm, JIPipeParallelizedAlgorithm, JIPipeParameterCollection

public class HistogramContrastEnhancerAlgorithm
extends JIPipeSimpleIteratingAlgorithm

This class is based on ContrastEnhancer This class is not very portable, so I adapted the code here

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	HistogramContrastEnhancerAlgorithm.Method

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

JIPipeAlgorithm.StateSerializer

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterUIChangedEvent

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
HistogramContrastEnhancerAlgorithm(HistogramContrastEnhancerAlgorithm other)
HistogramContrastEnhancerAlgorithm(JIPipeNodeInfo info)

Method Summary

Modifier and Type	Method and Description
void	equalize(ij.ImagePlus imp, boolean classicEqualization)
void	equalize(ij.process.ImageProcessor ip, boolean classicEqualization) Changes the tone curves of images.
HistogramContrastEnhancerAlgorithm.Method	getMethod()
double	getSaturatedPixels()
boolean	isUseStackHistogram()
protected void	runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo) Runs code on one data row
void	setMethod(HistogramContrastEnhancerAlgorithm.Method method)
boolean	setSaturatedPixels(double saturatedPixels)
void	setUseStackHistogram(boolean useStackHistogram)
void	stretchHistogram(ij.ImagePlus imp, double saturated, boolean normalize)
void	stretchHistogram(ij.process.ImageProcessor ip, double saturated, boolean normalize)
void	stretchHistogram(ij.process.ImageProcessor ip, double saturated, ij.process.ImageStatistics stats, boolean normalize)

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

generateDataBatchesDryRun, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getParallelizationBatchSize, isParallelizationEnabled, isParameterUIVisible, isParameterUIVisible, reportValidity, runParameterSet, runPassThrough, setParallelizationEnabled, supportsParallelization

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, run

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, canPassThrough, getStateId, getThreadPool, isEnabled, isPassThrough, isPostprocessor, isPreprocessor, loadExample, runPassThrough, setEnabled, setPassThrough, setThreadPool

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, fromJson, fromJsonNode, getAliasIdInParentGraph, getBaseDirectory, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getDependencies, getDisplayName, getEventBus, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getLocations, getLocationWithin, getName, getNewScratch, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProjectCompartment, getProjectDirectory, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isVisibleIn, onDeserialized, onParameterChanged, onParameterStructureChanged, onParameterUIChanged, onSlotConfigurationChanged, onSlotConnected, onSlotDisconnected, registerSubParameter, renderInputSlots, renderOutputSlots, setAllSlotsVirtual, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setLocations, setLocationWithin, setLocationWithin, setParentGraph, setProjectDirectory, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, toggleSlot, toJson, triggerSlotsChangedEvent, updateGraphNodeSlots, updateSlotInheritance

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

addParameterChangeListener, addParameterChangeListener, getContextActions, getParameter, getParameterAccess, setParameter, triggerParameterChange, triggerParameterStructureChange, triggerParameterUIChange

Constructor Detail

HistogramContrastEnhancerAlgorithm

public HistogramContrastEnhancerAlgorithm(JIPipeNodeInfo info)

HistogramContrastEnhancerAlgorithm

public HistogramContrastEnhancerAlgorithm(HistogramContrastEnhancerAlgorithm other)

Method Detail

runIteration

protected void runIteration(JIPipeDataBatch dataBatch,
                            JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeSimpleIteratingAlgorithm

Runs code on one data row

Specified by:

runIteration in class JIPipeSimpleIteratingAlgorithm

Parameters:

dataBatch - The data interface

progressInfo - the progress info from the run

getSaturatedPixels

public double getSaturatedPixels()

setSaturatedPixels

public boolean setSaturatedPixels(double saturatedPixels)

getMethod

public HistogramContrastEnhancerAlgorithm.Method getMethod()

setMethod

public void setMethod(HistogramContrastEnhancerAlgorithm.Method method)

isUseStackHistogram

public boolean isUseStackHistogram()

setUseStackHistogram

public void setUseStackHistogram(boolean useStackHistogram)

stretchHistogram

public void stretchHistogram(ij.ImagePlus imp,
                             double saturated,
                             boolean normalize)

stretchHistogram

public void stretchHistogram(ij.process.ImageProcessor ip,
                             double saturated,
                             boolean normalize)

stretchHistogram

public void stretchHistogram(ij.process.ImageProcessor ip,
                             double saturated,
                             ij.process.ImageStatistics stats,
                             boolean normalize)

equalize

public void equalize(ij.ImagePlus imp,
                     boolean classicEqualization)

equalize

public void equalize(ij.process.ImageProcessor ip,
                     boolean classicEqualization)

Changes the tone curves of images. It should bring up the detail in the flat regions of your image. Histogram Equalization can enhance meaningless detail and hide important but small high-contrast features. This method uses a similar algorithm, but uses the square root of the histogram values, so its effects are less extreme. Hold the alt key down to use the standard histogram equalization algorithm. This code was contributed by Richard Kirk (rak@cre.canon.co.uk).