org.hkijena.jipipe.extensions.r

Class RUtils

java.lang.Object

org.hkijena.jipipe.extensions.r.RUtils

public class RUtils
extends Object

Field Summary

Fields

Modifier and Type	Field and Description
static Class<?>[]	ALLOWED_PARAMETER_CLASSES

Constructor Summary

Constructors

Constructor and Description
RUtils()

Method Summary

Modifier and Type	Method and Description
static void	inputSlotsToR(StringBuilder code, Map<String,Path> inputSlotPaths, List<JIPipeInputDataSlot> inputSlots)
static void	installInputLoaderCode(StringBuilder code)
static void	installOutputGeneratorCode(StringBuilder code)
static void	installPostprocessorCode(StringBuilder code)
static void	outputSlotsToR(StringBuilder code, List<JIPipeOutputDataSlot> outputSlots, Map<String,Path> outputSlotPaths)
static void	parametersToR(StringBuilder code, JIPipeParameterCollection parameterCollection) Converts parameters into R code.
static void	runR(Path scriptFile, REnvironment environment, JIPipeProgressInfo progressInfo)
static void	runR(String script, REnvironment environment, JIPipeProgressInfo progressInfo)
static void	textAnnotationsToR(StringBuilder code, Collection<JIPipeTextAnnotation> annotations) Converts annotations into R code.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

ALLOWED_PARAMETER_CLASSES

public static Class<?>[] ALLOWED_PARAMETER_CLASSES

Constructor Detail

RUtils

public RUtils()

Method Detail

textAnnotationsToR

public static void textAnnotationsToR(StringBuilder code,
                                      Collection<JIPipeTextAnnotation> annotations)

Converts annotations into R code.

Parameters:

code - the code

annotations - the annotations

parametersToR

public static void parametersToR(StringBuilder code,
                                 JIPipeParameterCollection parameterCollection)

Converts parameters into R code. Only parameters in ALLOWED_PARAMETER_CLASSES are converted. All parameters are also available in a list JIPipe.Variables

Parameters:

code - the code

parameterCollection - the parameters

inputSlotsToR

public static void inputSlotsToR(StringBuilder code,
                                 Map<String,Path> inputSlotPaths,
                                 List<JIPipeInputDataSlot> inputSlots)

outputSlotsToR

public static void outputSlotsToR(StringBuilder code,
                                  List<JIPipeOutputDataSlot> outputSlots,
                                  Map<String,Path> outputSlotPaths)

installInputLoaderCode

public static void installInputLoaderCode(StringBuilder code)

installOutputGeneratorCode

public static void installOutputGeneratorCode(StringBuilder code)

installPostprocessorCode

public static void installPostprocessorCode(StringBuilder code)

runR

public static void runR(String script,
                        REnvironment environment,
                        JIPipeProgressInfo progressInfo)

runR

public static void runR(Path scriptFile,
                        REnvironment environment,
                        JIPipeProgressInfo progressInfo)