org.hkijena.jipipe.extensions.imagejalgorithms.ij1.overlay

Class RenderOverlayAlgorithm

java.lang.Object

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.overlay.RenderOverlayAlgorithm

All Implemented Interfaces:

JIPipeValidatable, JIPipeAdaptiveParametersAlgorithm, JIPipeDataBatchAlgorithm, JIPipeParallelizedAlgorithm, JIPipeParameterCollection

public class RenderOverlayAlgorithm
extends JIPipeSimpleIteratingAlgorithm

Wrapper around RoiDrawer

Nested Class Summary

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

JIPipeAlgorithm.StateSerializer

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterUIChangedEvent

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
RenderOverlayAlgorithm(JIPipeNodeInfo info) Instantiates a new node type.
RenderOverlayAlgorithm(RenderOverlayAlgorithm other) Instantiates a new node type.

Method Summary

Modifier and Type	Method and Description
protected boolean	canPassThrough() Returns true if the algorithm can apply pass-through.
ROIElementDrawingMode	getDrawFilledOutlineMode()
RoiLabel	getDrawnLabel()
ROIElementDrawingMode	getDrawOutlineMode()
OptionalColorParameter	getLabelBackground()
Color	getLabelForeground()
int	getLabelSize()
double	getMagnification()
double	getOpacity()
OptionalColorParameter	getOverrideFillColor()
OptionalColorParameter	getOverrideLineColor()
OptionalDoubleParameter	getOverrideLineWidth()
boolean	isIgnoreC()
boolean	isIgnoreT()
boolean	isIgnoreZ()
boolean	isPreferRenderViaOverlay()
protected void	runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo) Runs code on one data row
void	setDrawFilledOutlineMode(ROIElementDrawingMode drawFilledOutlineMode)
void	setDrawnLabel(RoiLabel drawnLabel)
void	setDrawOutlineMode(ROIElementDrawingMode drawOutlineMode)
void	setIgnoreC(boolean ignoreC)
void	setIgnoreT(boolean ignoreT)
void	setIgnoreZ(boolean ignoreZ)
void	setLabelBackground(OptionalColorParameter labelBackground)
void	setLabelForeground(Color labelForeground)
boolean	setLabelSize(int labelSize)
void	setMagnification(double magnification)
boolean	setOpacity(double opacity)
void	setOverrideFillColor(OptionalColorParameter overrideFillColor)
void	setOverrideLineColor(OptionalColorParameter overrideLineColor)
void	setOverrideLineWidth(OptionalDoubleParameter overrideLineWidth)
void	setPreferRenderViaOverlay(boolean preferRenderViaOverlay)

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

generateDataBatchesDryRun, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getParallelizationBatchSize, isParallelizationEnabled, isParameterUIVisible, isParameterUIVisible, reportValidity, runParameterSet, runPassThrough, setParallelizationEnabled, supportsParallelization

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, run

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, getStateId, getThreadPool, isEnabled, isPassThrough, isPostprocessor, isPreprocessor, loadExample, runPassThrough, setEnabled, setPassThrough, setThreadPool

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, fromJson, fromJsonNode, getAliasIdInParentGraph, getBaseDirectory, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getDependencies, getDisplayName, getEventBus, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getLocations, getLocationWithin, getName, getNewScratch, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProjectCompartment, getProjectDirectory, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isVisibleIn, onDeserialized, onParameterChanged, onParameterStructureChanged, onParameterUIChanged, onSlotConfigurationChanged, onSlotConnected, onSlotDisconnected, registerSubParameter, renderInputSlots, renderOutputSlots, setAllSlotsVirtual, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setLocations, setLocationWithin, setLocationWithin, setParentGraph, setProjectDirectory, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, toggleSlot, toJson, triggerSlotsChangedEvent, updateGraphNodeSlots, updateSlotInheritance

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

addParameterChangeListener, addParameterChangeListener, getContextActions, getParameter, getParameterAccess, setParameter, triggerParameterChange, triggerParameterStructureChange, triggerParameterUIChange

Constructor Detail

RenderOverlayAlgorithm

public RenderOverlayAlgorithm(JIPipeNodeInfo info)

Instantiates a new node type.

Parameters:

info - the info

RenderOverlayAlgorithm

public RenderOverlayAlgorithm(RenderOverlayAlgorithm other)

Instantiates a new node type.

Parameters:

other - the other

Method Detail

canPassThrough

protected boolean canPassThrough()

Description copied from class: JIPipeAlgorithm

Returns true if the algorithm can apply pass-through. Override this method to implement your own checks

Overrides:

canPassThrough in class JIPipeAlgorithm

Returns:

true if the algorithm can apply pass-through

runIteration

protected void runIteration(JIPipeDataBatch dataBatch,
                            JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeSimpleIteratingAlgorithm

Runs code on one data row

Specified by:

runIteration in class JIPipeSimpleIteratingAlgorithm

Parameters:

dataBatch - The data interface

progressInfo - the progress info from the run

getOpacity

public double getOpacity()

setOpacity

public boolean setOpacity(double opacity)

getDrawOutlineMode

public ROIElementDrawingMode getDrawOutlineMode()

setDrawOutlineMode

public void setDrawOutlineMode(ROIElementDrawingMode drawOutlineMode)

getDrawFilledOutlineMode

public ROIElementDrawingMode getDrawFilledOutlineMode()

setDrawFilledOutlineMode

public void setDrawFilledOutlineMode(ROIElementDrawingMode drawFilledOutlineMode)

getDrawnLabel

public RoiLabel getDrawnLabel()

setDrawnLabel

public void setDrawnLabel(RoiLabel drawnLabel)

getLabelForeground

public Color getLabelForeground()

setLabelForeground

public void setLabelForeground(Color labelForeground)

getLabelBackground

public OptionalColorParameter getLabelBackground()

setLabelBackground

public void setLabelBackground(OptionalColorParameter labelBackground)

getLabelSize

public int getLabelSize()

setLabelSize

public boolean setLabelSize(int labelSize)

getOverrideFillColor

public OptionalColorParameter getOverrideFillColor()

setOverrideFillColor

public void setOverrideFillColor(OptionalColorParameter overrideFillColor)

getOverrideLineColor

public OptionalColorParameter getOverrideLineColor()

setOverrideLineColor

public void setOverrideLineColor(OptionalColorParameter overrideLineColor)

getOverrideLineWidth

public OptionalDoubleParameter getOverrideLineWidth()

setOverrideLineWidth

public void setOverrideLineWidth(OptionalDoubleParameter overrideLineWidth)

isIgnoreZ

public boolean isIgnoreZ()

setIgnoreZ

public void setIgnoreZ(boolean ignoreZ)

isIgnoreC

public boolean isIgnoreC()

setIgnoreC

public void setIgnoreC(boolean ignoreC)

isIgnoreT

public boolean isIgnoreT()

setIgnoreT

public void setIgnoreT(boolean ignoreT)

getMagnification

public double getMagnification()

setMagnification

public void setMagnification(double magnification)

isPreferRenderViaOverlay

public boolean isPreferRenderViaOverlay()

setPreferRenderViaOverlay

public void setPreferRenderViaOverlay(boolean preferRenderViaOverlay)