Uses of Class
org.hkijena.jipipe.api.parameters.JIPipeParameter

Packages that use JIPipeParameter

Package	Description
org.hkijena.jipipe
org.hkijena.jipipe.api
org.hkijena.jipipe.api.annotation
org.hkijena.jipipe.api.compartments.algorithms
org.hkijena.jipipe.api.compat
org.hkijena.jipipe.api.data
org.hkijena.jipipe.api.environments
org.hkijena.jipipe.api.grouping
org.hkijena.jipipe.api.grouping.parameters
org.hkijena.jipipe.api.looping
org.hkijena.jipipe.api.nodes
org.hkijena.jipipe.extensions.annotation.algorithms
org.hkijena.jipipe.extensions.cellpose
org.hkijena.jipipe.extensions.cellpose.algorithms
org.hkijena.jipipe.extensions.cellpose.algorithms.deprecated
org.hkijena.jipipe.extensions.cellpose.installers
org.hkijena.jipipe.extensions.cellpose.parameters
org.hkijena.jipipe.extensions.cellpose.parameters.deprecated
org.hkijena.jipipe.extensions.clij2
org.hkijena.jipipe.extensions.clij2.algorithms
org.hkijena.jipipe.extensions.core.nodes
org.hkijena.jipipe.extensions.filesystem
org.hkijena.jipipe.extensions.filesystem.algorithms
org.hkijena.jipipe.extensions.filesystem.datasources
org.hkijena.jipipe.extensions.forms.algorithms
org.hkijena.jipipe.extensions.forms.datatypes
org.hkijena.jipipe.extensions.forms.utils
org.hkijena.jipipe.extensions.ijmultitemplatematching
org.hkijena.jipipe.extensions.ijtrackmate.nodes.converters
org.hkijena.jipipe.extensions.ijtrackmate.nodes.detectors
org.hkijena.jipipe.extensions.ijtrackmate.nodes.spots
org.hkijena.jipipe.extensions.ijtrackmate.nodes.tracks
org.hkijena.jipipe.extensions.ijtrackmate.parameters
org.hkijena.jipipe.extensions.ijtrackmate.settings
org.hkijena.jipipe.extensions.ijtrackmate.utils
org.hkijena.jipipe.extensions.ijweka.nodes
org.hkijena.jipipe.extensions.ijweka.parameters
org.hkijena.jipipe.extensions.ijweka.parameters.collections
org.hkijena.jipipe.extensions.imagej2
org.hkijena.jipipe.extensions.imagej2.algorithms
org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds
org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds.constant
org.hkijena.jipipe.extensions.imagej2.datatypes.shapes
org.hkijena.jipipe.extensions.imagejalgorithms.ij1
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.calibration
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.colocalization
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convert
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.forms
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.labels
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.labels.filter
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.distancemap
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.local
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.opticalflow
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.overlay
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.annotations
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.assemble
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.convert
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.draw
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.filter
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.generate
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.measure
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.merge
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.modify
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.properties
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.sort
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.split
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.segment
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.color
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.iterative
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.local
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform
org.hkijena.jipipe.extensions.imagejalgorithms.utils
org.hkijena.jipipe.extensions.imagejdatatypes
org.hkijena.jipipe.extensions.imagejdatatypes.algorithms
org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.color
org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.datasources
org.hkijena.jipipe.extensions.imagejdatatypes.parameters
org.hkijena.jipipe.extensions.imagejdatatypes.settings
org.hkijena.jipipe.extensions.imagejdatatypes.util
org.hkijena.jipipe.extensions.imageviewer.plugins.maskdrawer
org.hkijena.jipipe.extensions.imageviewer.plugins.roimanager
org.hkijena.jipipe.extensions.multiparameters.nodes
org.hkijena.jipipe.extensions.omero
org.hkijena.jipipe.extensions.omero.algorithms
org.hkijena.jipipe.extensions.omero.datasources
org.hkijena.jipipe.extensions.omnipose
org.hkijena.jipipe.extensions.omnipose.algorithms
org.hkijena.jipipe.extensions.omnipose.parameters
org.hkijena.jipipe.extensions.parameters.api.enums
org.hkijena.jipipe.extensions.parameters.library.primitives
org.hkijena.jipipe.extensions.parameters.library.references
org.hkijena.jipipe.extensions.parameters.library.roi
org.hkijena.jipipe.extensions.pipelinerender
org.hkijena.jipipe.extensions.plots.datatypes
org.hkijena.jipipe.extensions.plots.nodes
org.hkijena.jipipe.extensions.processes
org.hkijena.jipipe.extensions.python
org.hkijena.jipipe.extensions.python.algorithms
org.hkijena.jipipe.extensions.python.installers
org.hkijena.jipipe.extensions.r
org.hkijena.jipipe.extensions.r.algorithms
org.hkijena.jipipe.extensions.r.installers
org.hkijena.jipipe.extensions.settings
org.hkijena.jipipe.extensions.strings.datasources
org.hkijena.jipipe.extensions.tables.nodes
org.hkijena.jipipe.extensions.tables.nodes.annotations
org.hkijena.jipipe.extensions.tables.nodes.columns
org.hkijena.jipipe.extensions.tables.nodes.filter
org.hkijena.jipipe.extensions.tables.nodes.merge
org.hkijena.jipipe.extensions.tables.nodes.rows
org.hkijena.jipipe.extensions.tables.nodes.split
org.hkijena.jipipe.extensions.tables.nodes.transform
org.hkijena.jipipe.extensions.tables.parameters.enums
org.hkijena.jipipe.extensions.utils.algorithms
org.hkijena.jipipe.extensions.utils.algorithms.datatable
org.hkijena.jipipe.extensions.utils.algorithms.distribute
org.hkijena.jipipe.extensions.utils.algorithms.meta
org.hkijena.jipipe.extensions.utils.algorithms.processes
org.hkijena.jipipe.ui.cache.exporters
org.hkijena.jipipe.ui.components
org.hkijena.jipipe.ui.components.tabs
org.hkijena.jipipe.ui.grapheditor.general.properties
org.hkijena.jipipe.ui.parameters
org.hkijena.jipipe.ui.plotbuilder
org.hkijena.jipipe.ui.quickrun
org.hkijena.jipipe.ui.settings

Uses of JIPipeParameter in org.hkijena.jipipe

Methods in org.hkijena.jipipe with annotations of type JIPipeParameter

Modifier and Type	Method and Description
String	JIPipeMutableDependency.getDependencyId()
String	JIPipeJsonExtension.getDependencyId()
String	JIPipeMutableDependency.getDependencyVersion()
String	JIPipeJsonExtension.getDependencyVersion()
String	JIPipeImageJUpdateSiteDependency.getDescription()
String	JIPipeImageJUpdateSiteDependency.getMaintainer()
JIPipeMetadata	JIPipeMutableDependency.getMetadata()
JIPipeMetadata	JIPipeJsonExtension.getMetadata()
String	JIPipeImageJUpdateSiteDependency.getName()
JIPipeImageJUpdateSiteDependency.List	JIPipeJsonExtension.getUpdateSiteDependenciesParameter()
String	JIPipeImageJUpdateSiteDependency.getUrl()
void	JIPipeMutableDependency.setDependencyId(String dependencyId) Sets the ID
void	JIPipeMutableDependency.setDependencyVersion(String dependencyVersion) Sets the version
void	JIPipeImageJUpdateSiteDependency.setDescription(String description)
void	JIPipeJsonExtension.setId(String id) Sets the ID
void	JIPipeImageJUpdateSiteDependency.setMaintainer(String maintainer)
void	JIPipeImageJUpdateSiteDependency.setName(String name)
void	JIPipeJsonExtension.setUpdateSiteDependenciesParameter(JIPipeImageJUpdateSiteDependency.List updateSiteDependenciesParameter)
void	JIPipeImageJUpdateSiteDependency.setUrl(String url)
void	JIPipeJsonExtension.setVersion(String version) Sets the version

Uses of JIPipeParameter in org.hkijena.jipipe.api

Methods in org.hkijena.jipipe.api with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeAuthorMetadata.List	JIPipeMetadata.getAcknowledgements() Gets the list of acknowledged authors
StringList	JIPipeAuthorMetadata.getAffiliations()
JIPipeAuthorMetadata.List	JIPipeMetadata.getAuthors()
Color	JIPipeNodeTemplate.getBorderColor()
PluginCategoriesEnumParameter.List	JIPipeMetadata.getCategories()
String	JIPipeMetadata.getCitation()
String	JIPipeAuthorMetadata.getContact()
HTMLText	JIPipeAuthorMetadata.getCustomText()
String	JIPipeNodeTemplate.getData()
StringList	JIPipeMetadata.getDependencyCitations()
HTMLText	JIPipeNodeTemplate.getDescription()
HTMLText	JIPipeMetadata.getDescription()
Color	JIPipeNodeTemplate.getFillColor()
String	JIPipeAuthorMetadata.getFirstName()
IconRef	JIPipeNodeTemplate.getIcon()
String	JIPipeAuthorMetadata.getLastName()
String	JIPipeMetadata.getLicense()
StringList	JIPipeNodeTemplate.getMenuPath()
String	JIPipeNodeTemplate.getName()
String	JIPipeMetadata.getName()
JIPipeNodeTemplate.List	JIPipeProjectMetadata.getNodeTemplates()
int	JIPipeRunSettings.getNumThreads()
Path	JIPipeRunSettings.getOutputPath()
JIPipeProjectPermissions	JIPipeProjectMetadata.getPermissions()
String	JIPipeNodeTemplate.getSource()
HTMLText	JIPipeMetadata.getSummary()
String	JIPipeProjectMetadata.getTemplateDescription()
ImageParameter	JIPipeMetadata.getThumbnail()
String	JIPipeAuthorMetadata.getTitle()
JIPipeImageJUpdateSiteDependency.List	JIPipeProjectMetadata.getUpdateSiteDependencies()
String	JIPipeMetadata.getWebsite()
String	JIPipeAuthorMetadata.getWebsite()
boolean	JIPipeAuthorMetadata.isCorrespondingAuthor()
boolean	JIPipeAuthorMetadata.isFirstAuthor()
boolean	JIPipeRunSettings.isLoadFromCache()
boolean	JIPipeProjectPermissions.isPreventAddingDeletingNodes()
boolean	JIPipeProjectPermissions.isPreventModifyingSlots()
boolean	JIPipeProjectMetadata.isRestoreTabs()
boolean	JIPipeRunSettings.isStoreToCache()
void	JIPipeMetadata.setAcknowledgements(JIPipeAuthorMetadata.List acknowledgements) Sets the list of acknowledged authors
void	JIPipeAuthorMetadata.setAffiliations(StringList affiliations)
void	JIPipeMetadata.setAuthors(JIPipeAuthorMetadata.List authors) Sets the authors
void	JIPipeNodeTemplate.setBorderColor(Color borderColor)
void	JIPipeMetadata.setCategories(PluginCategoriesEnumParameter.List categories)
void	JIPipeMetadata.setCitation(String citation) Sets the citation
void	JIPipeAuthorMetadata.setContact(String contact)
void	JIPipeAuthorMetadata.setCorrespondingAuthor(boolean correspondingAuthor)
void	JIPipeAuthorMetadata.setCustomText(HTMLText customText)
void	JIPipeNodeTemplate.setData(String data)
void	JIPipeMetadata.setDependencyCitations(StringList dependencyCitations)
void	JIPipeNodeTemplate.setDescription(HTMLText description)
void	JIPipeMetadata.setDescription(HTMLText description) Sets the description
void	JIPipeNodeTemplate.setFillColor(Color fillColor)
void	JIPipeAuthorMetadata.setFirstAuthor(boolean firstAuthor)
void	JIPipeAuthorMetadata.setFirstName(String firstName)
void	JIPipeNodeTemplate.setIcon(IconRef icon)
void	JIPipeAuthorMetadata.setLastName(String lastName)
void	JIPipeMetadata.setLicense(String license) Sets the license
void	JIPipeRunSettings.setLoadFromCache(boolean loadFromCache)
void	JIPipeNodeTemplate.setMenuPath(StringList menuPath)
void	JIPipeNodeTemplate.setName(String name)
void	JIPipeMetadata.setName(String name) Sets the name
void	JIPipeProjectMetadata.setNodeTemplates(JIPipeNodeTemplate.List nodeTemplates)
void	JIPipeRunSettings.setNumThreads(int numThreads)
void	JIPipeRunSettings.setOutputPath(Path outputPath) Sets the output path
void	JIPipeProjectPermissions.setPreventAddingDeletingNodes(boolean preventAddingDeletingNodes)
void	JIPipeProjectPermissions.setPreventModifyingSlots(boolean preventModifyingSlots)
void	JIPipeProjectMetadata.setRestoreTabs(boolean restoreTabs)
void	JIPipeNodeTemplate.setSource(String source)
void	JIPipeRunSettings.setStoreToCache(boolean storeToCache)
void	JIPipeMetadata.setSummary(HTMLText summary)
void	JIPipeProjectMetadata.setTemplateDescription(String templateDescription)
void	JIPipeMetadata.setThumbnail(ImageParameter thumbnail)
void	JIPipeAuthorMetadata.setTitle(String title)
void	JIPipeProjectMetadata.setUpdateSiteDependencies(JIPipeImageJUpdateSiteDependency.List updateSiteDependencies)
void	JIPipeMetadata.setWebsite(String website) Sets the website
void	JIPipeAuthorMetadata.setWebsite(String website)

Uses of JIPipeParameter in org.hkijena.jipipe.api.annotation

Methods in org.hkijena.jipipe.api.annotation with annotations of type JIPipeParameter

Modifier and Type	Method and Description
DefaultExpressionParameter	JIPipeDataByMetadataExporter.getFileNameGenerator()
boolean	JIPipeDataByMetadataExporter.isForceName()
boolean	JIPipeDataByMetadataExporter.isMakeFilesystemCompatible()
void	JIPipeDataByMetadataExporter.setFileNameGenerator(DefaultExpressionParameter fileNameGenerator)
void	JIPipeDataByMetadataExporter.setForceName(boolean forceName)
void	JIPipeDataByMetadataExporter.setMakeFilesystemCompatible(boolean makeFilesystemCompatible)

Uses of JIPipeParameter in org.hkijena.jipipe.api.compartments.algorithms

Methods in org.hkijena.jipipe.api.compartments.algorithms with annotations of type JIPipeParameter

Modifier and Type	Method and Description
GraphNodeParameterReferenceGroupCollection	JIPipeProjectCompartment.getExportedParameters()
boolean	JIPipeProjectCompartment.isShowLimitedParameters()
void	JIPipeProjectCompartment.setCustomName(String customName)
void	JIPipeProjectCompartment.setExportedParameters(GraphNodeParameterReferenceGroupCollection exportedParameters)
void	JIPipeProjectCompartment.setShowLimitedParameters(boolean showLimitedParameters)

Uses of JIPipeParameter in org.hkijena.jipipe.api.compat

Methods in org.hkijena.jipipe.api.compat with annotations of type JIPipeParameter

Modifier and Type	Method and Description
String	ImageJDataExportOperation.getExporterId()
String	ImageJDataImportOperation.getImporterId()
String	ImageJImportParameters.getName()
String	ImageJExportParameters.getName()
boolean	ImageJExportParameters.isActivate()
boolean	ImageJExportParameters.isAppend()
boolean	ImageJImportParameters.isDuplicate()
boolean	ImageJExportParameters.isDuplicate()
boolean	ImageJExportParameters.isNoWindows()
void	ImageJExportParameters.setActivate(boolean activate)
void	ImageJExportParameters.setAppend(boolean append)
void	ImageJImportParameters.setDuplicate(boolean duplicate)
void	ImageJExportParameters.setDuplicate(boolean duplicate)
void	ImageJDataExportOperation.setExporterId(String exporterId)
void	ImageJDataImportOperation.setImporterId(String importerId)
void	ImageJImportParameters.setName(String name)
void	ImageJExportParameters.setName(String name)
void	ImageJExportParameters.setNoWindows(boolean noWindows)

Uses of JIPipeParameter in org.hkijena.jipipe.api.data

Methods in org.hkijena.jipipe.api.data with annotations of type JIPipeParameter

Modifier and Type	Method and Description
String	JIPipeDataSlotInfo.getCustomName()
String	JIPipeDataSlotInfo.getDescription()
boolean	JIPipeDataSlotInfo.isOptional()
boolean	JIPipeDataSlotInfo.isSaveOutputs()
boolean	JIPipeDataSlotInfo.isVirtual()
void	JIPipeDataSlotInfo.setCustomName(String customName) Overrides the name displayed in the UI
void	JIPipeDataSlotInfo.setDescription(String description)
void	JIPipeDataSlotInfo.setOptional(boolean optional)
void	JIPipeDataSlotInfo.setSaveOutputs(boolean saveOutputs)
void	JIPipeDataSlotInfo.setVirtual(boolean virtual)

Uses of JIPipeParameter in org.hkijena.jipipe.api.environments

Methods in org.hkijena.jipipe.api.environments with annotations of type JIPipeParameter

Modifier and Type	Method and Description
String	ExternalEnvironment.getName()
void	ExternalEnvironment.setName(String name)

Uses of JIPipeParameter in org.hkijena.jipipe.api.grouping

Methods in org.hkijena.jipipe.api.grouping with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeMergingAlgorithmDataBatchGenerationSettings	JsonAlgorithm.getBatchGenerationSettings()
JIPipeMergingAlgorithmDataBatchGenerationSettings	NodeGroup.getBatchGenerationSettings()
DynamicCategoryEnumParameter	JsonNodeInfo.getCategoryParameter()
NodeGroupContents	NodeGroup.getContents()
IconRef	JsonNodeInfo.getCustomIcon()
HTMLText	JsonNodeInfo.getDescription()
GraphNodeParameterReferenceGroupCollection	JsonNodeInfo.getExportedParameters()
GraphNodeParameterReferenceGroupCollection	NodeGroup.getExportedParameters()
String	JsonNodeInfo.getId()
GraphWrapperAlgorithm.IterationMode	JsonAlgorithm.getIterationMode()
GraphWrapperAlgorithm.IterationMode	NodeGroup.getIterationMode()
StringList	JsonNodeInfo.getMenuPathList()
String	JsonNodeInfo.getName()
boolean	JsonNodeInfo.isHidden()
boolean	NodeGroup.isShowLimitedParameters()
void	JsonNodeInfo.setCategoryParameter(DynamicCategoryEnumParameter parameter)
void	NodeGroup.setContents(NodeGroupContents contents)
void	JsonNodeInfo.setCustomIcon(IconRef customIcon)
void	JsonNodeInfo.setDescription(HTMLText description)
void	JsonNodeInfo.setExportedParameters(GraphNodeParameterReferenceGroupCollection exportedParameters)
void	NodeGroup.setExportedParameters(GraphNodeParameterReferenceGroupCollection exportedParameters)
void	JsonNodeInfo.setHidden(boolean hidden)
void	JsonNodeInfo.setId(String id)
void	JsonAlgorithm.setIterationMode(GraphWrapperAlgorithm.IterationMode iterationMode)
void	NodeGroup.setIterationMode(GraphWrapperAlgorithm.IterationMode iterationMode)
void	JsonNodeInfo.setMenuPathList(StringList value)
void	JsonNodeInfo.setName(String name)
void	NodeGroup.setShowLimitedParameters(boolean showLimitedParameters)

Uses of JIPipeParameter in org.hkijena.jipipe.api.grouping.parameters

Methods in org.hkijena.jipipe.api.grouping.parameters with annotations of type JIPipeParameter

Modifier and Type	Method and Description
HTMLText	GraphNodeParameterReference.getCustomDescription()
String	GraphNodeParameterReference.getCustomName()
HTMLText	GraphNodeParameterReferenceGroup.getDescription()
String	GraphNodeParameterReferenceGroup.getName()
String	GraphNodeParameterReference.getPath()
void	GraphNodeParameterReference.setCustomDescription(HTMLText customDescription)
void	GraphNodeParameterReference.setCustomName(String customName)
void	GraphNodeParameterReferenceGroup.setDescription(HTMLText description)
void	GraphNodeParameterReferenceGroup.setName(String name)
void	GraphNodeParameterReference.setPath(String path)

Uses of JIPipeParameter in org.hkijena.jipipe.api.looping

Methods in org.hkijena.jipipe.api.looping with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeMergingAlgorithmDataBatchGenerationSettings	LoopStartNode.getBatchGenerationSettings()
GraphWrapperAlgorithm.IterationMode	LoopStartNode.getIterationMode()
void	LoopStartNode.setIterationMode(GraphWrapperAlgorithm.IterationMode iterationMode)

Uses of JIPipeParameter in org.hkijena.jipipe.api.nodes

Methods in org.hkijena.jipipe.api.nodes with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeAdaptiveParameterSettings	JIPipeSingleIterationAlgorithm.getAdaptiveParameterSettings()
JIPipeAdaptiveParameterSettings	JIPipeMergingAlgorithm.getAdaptiveParameterSettings()
JIPipeAdaptiveParameterSettings	JIPipeIteratingAlgorithm.getAdaptiveParameterSettings()
JIPipeAdaptiveParameterSettings	JIPipeSimpleIteratingAlgorithm.getAdaptiveParameterSettings()
JIPipeTextAnnotationMatchingMethod	JIPipeIteratingMissingDataGeneratorDataBatchGenerationSettings.getAnnotationMatchingMethod()
JIPipeTextAnnotationMatchingMethod	JIPipeIteratingAlgorithmDataBatchGenerationSettings.getAnnotationMatchingMethod()
JIPipeTextAnnotationMatchingMethod	JIPipeMergingAlgorithmDataBatchGenerationSettings.getAnnotationMatchingMethod()
JIPipeTextAnnotationMergeMode	JIPipeSingleIterationAlgorithmDataBatchGenerationSettings.getAnnotationMergeStrategy()
JIPipeTextAnnotationMergeMode	JIPipeIteratingMissingDataGeneratorDataBatchGenerationSettings.getAnnotationMergeStrategy()
JIPipeTextAnnotationMergeMode	JIPipeIteratingAlgorithmDataBatchGenerationSettings.getAnnotationMergeStrategy()
JIPipeTextAnnotationMergeMode	JIPipeMergingAlgorithmDataBatchGenerationSettings.getAnnotationMergeStrategy()
JIPipeTextAnnotationMergeMode	JIPipeMissingDataGeneratorDataBatchGenerationSettings.getAnnotationMergeStrategy()
JIPipeColumMatching	JIPipeIteratingMissingDataGeneratorDataBatchGenerationSettings.getColumnMatching()
JIPipeColumMatching	JIPipeIteratingAlgorithmDataBatchGenerationSettings.getColumnMatching()
JIPipeColumMatching	JIPipeMergingAlgorithmDataBatchGenerationSettings.getColumnMatching()
DefaultExpressionParameter	JIPipeIteratingMissingDataGeneratorDataBatchGenerationSettings.getCustomAnnotationMatching()
DefaultExpressionParameter	JIPipeIteratingAlgorithmDataBatchGenerationSettings.getCustomAnnotationMatching()
DefaultExpressionParameter	JIPipeMergingAlgorithmDataBatchGenerationSettings.getCustomAnnotationMatching()
StringQueryExpression	JIPipeIteratingMissingDataGeneratorDataBatchGenerationSettings.getCustomColumns()
StringQueryExpression	JIPipeIteratingAlgorithmDataBatchGenerationSettings.getCustomColumns()
StringQueryExpression	JIPipeMergingAlgorithmDataBatchGenerationSettings.getCustomColumns()
StringQueryExpression	JIPipeMissingDataGeneratorDataBatchGenerationSettings.getCustomColumns()
HTMLText	JIPipeGraphNode.getCustomDescription() Returns the custom description that is set by the user
JIPipeDataAnnotationMergeMode	JIPipeSingleIterationAlgorithmDataBatchGenerationSettings.getDataAnnotationMergeStrategy()
JIPipeDataAnnotationMergeMode	JIPipeIteratingMissingDataGeneratorDataBatchGenerationSettings.getDataAnnotationMergeStrategy()
JIPipeDataAnnotationMergeMode	JIPipeIteratingAlgorithmDataBatchGenerationSettings.getDataAnnotationMergeStrategy()
JIPipeDataAnnotationMergeMode	JIPipeMergingAlgorithmDataBatchGenerationSettings.getDataAnnotationMergeStrategy()
JIPipeDataAnnotationMergeMode	JIPipeMissingDataGeneratorDataBatchGenerationSettings.getDataAnnotationMergeStrategy()
JIPipeSingleIterationAlgorithmDataBatchGenerationSettings	JIPipeSingleIterationAlgorithm.getDataBatchGenerationSettings()
JIPipeIteratingMissingDataGeneratorDataBatchGenerationSettings	JIPipeIteratingMissingDataGeneratorAlgorithm.getDataBatchGenerationSettings()
JIPipeMergingAlgorithmDataBatchGenerationSettings	JIPipeMergingAlgorithm.getDataBatchGenerationSettings()
JIPipeParameterlessSimpleIteratingAlgorithm.DataBatchGenerationSettings	JIPipeParameterlessSimpleIteratingAlgorithm.getDataBatchGenerationSettings()
JIPipeMissingDataGeneratorDataBatchGenerationSettings	JIPipeMissingDataGeneratorAlgorithm.getDataBatchGenerationSettings()
JIPipeIteratingAlgorithmDataBatchGenerationSettings	JIPipeIteratingAlgorithm.getDataBatchGenerationSettings()
JIPipeSimpleIteratingAlgorithmDataBatchGenerationSettings	JIPipeSimpleIteratingAlgorithm.getDataBatchGenerationSettings()
JIPipeColumMatching	JIPipeMissingDataGeneratorDataBatchGenerationSettings.getDataSetMatching()
OptionalIntegerRange	JIPipeSimpleIteratingAlgorithmDataBatchGenerationSettings.getLimit()
OptionalIntegerRange	JIPipeParameterlessSimpleIteratingAlgorithm.DataBatchGenerationSettings.getLimit()
OptionalIntegerRange	JIPipeIteratingMissingDataGeneratorDataBatchGenerationSettings.getLimit()
OptionalIntegerRange	JIPipeIteratingAlgorithmDataBatchGenerationSettings.getLimit()
OptionalIntegerRange	JIPipeMergingAlgorithmDataBatchGenerationSettings.getLimit()
OptionalIntegerRange	JIPipeMissingDataGeneratorDataBatchGenerationSettings.getLimit()
String	JIPipeGraphNode.getName() Returns the algorithm name
StringQueryExpressionAndStringPairParameter.List	JIPipeAdaptiveParameterSettings.getOverriddenParameters()
String	JIPipeAdaptiveParameterSettings.getParameterAnnotationsPrefix()
String	JIPipeParameterSlotAlgorithmSettings.getParameterAnnotationsPrefix()
JIPipeParameterSlotAlgorithmSettings	JIPipeParameterSlotAlgorithm.getParameterSlotAlgorithmSettings()
boolean	JIPipeMissingDataGeneratorDataBatchGenerationSettings.isAllowMerging()
boolean	JIPipeAdaptiveParameterSettings.isAttachOnlyNonDefaultParameterAnnotations()
boolean	JIPipeParameterSlotAlgorithmSettings.isAttachOnlyNonDefaultParameterAnnotations()
boolean	JIPipeAdaptiveParameterSettings.isAttachParameterAnnotations()
boolean	JIPipeParameterSlotAlgorithmSettings.isAttachParameterAnnotations()
boolean	JIPipeGraphNode.isBookmarked()
boolean	JIPipeAlgorithm.isEnabled()
boolean	JIPipeAdaptiveParameterSettings.isEnabled()
boolean	JIPipeIteratingMissingDataGeneratorDataBatchGenerationSettings.isForceFlowGraphSolver()
boolean	JIPipeIteratingAlgorithmDataBatchGenerationSettings.isForceFlowGraphSolver()
boolean	JIPipeMergingAlgorithmDataBatchGenerationSettings.isForceFlowGraphSolver()
boolean	JIPipeMissingDataGeneratorDataBatchGenerationSettings.isForceFlowGraphSolver()
boolean	JIPipeParameterSlotAlgorithmSettings.isHasParameterSlot()
boolean	JIPipeIteratingMissingDataGeneratorAlgorithm.isKeepOriginalAnnotations()
boolean	JIPipeMissingDataGeneratorAlgorithm.isKeepOriginalAnnotations()
boolean	JIPipeSingleIterationAlgorithm.isParallelizationEnabled()
boolean	JIPipeIteratingMissingDataGeneratorAlgorithm.isParallelizationEnabled()
boolean	JIPipeMergingAlgorithm.isParallelizationEnabled()
boolean	JIPipeParameterlessSimpleIteratingAlgorithm.isParallelizationEnabled()
boolean	JIPipeMissingDataGeneratorAlgorithm.isParallelizationEnabled()
boolean	JIPipeIteratingAlgorithm.isParallelizationEnabled()
boolean	JIPipeSimpleIteratingAlgorithm.isParallelizationEnabled()
boolean	JIPipeAdaptiveParameterSettings.isParameterAnnotationsUseInternalNames()
boolean	JIPipeParameterSlotAlgorithmSettings.isParameterAnnotationsUseInternalNames()
boolean	JIPipeAlgorithm.isPassThrough()
boolean	JIPipeIteratingAlgorithmDataBatchGenerationSettings.isSkipIncompleteDataSets()
boolean	JIPipeMergingAlgorithmDataBatchGenerationSettings.isSkipIncompleteDataSets()
void	JIPipeMissingDataGeneratorDataBatchGenerationSettings.setAllowMerging(boolean allowMerging)
void	JIPipeIteratingMissingDataGeneratorDataBatchGenerationSettings.setAnnotationMatchingMethod(JIPipeTextAnnotationMatchingMethod annotationMatchingMethod)
void	JIPipeIteratingAlgorithmDataBatchGenerationSettings.setAnnotationMatchingMethod(JIPipeTextAnnotationMatchingMethod annotationMatchingMethod)
void	JIPipeMergingAlgorithmDataBatchGenerationSettings.setAnnotationMatchingMethod(JIPipeTextAnnotationMatchingMethod annotationMatchingMethod)
void	JIPipeSingleIterationAlgorithmDataBatchGenerationSettings.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	JIPipeIteratingMissingDataGeneratorDataBatchGenerationSettings.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	JIPipeIteratingAlgorithmDataBatchGenerationSettings.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	JIPipeMergingAlgorithmDataBatchGenerationSettings.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	JIPipeMissingDataGeneratorDataBatchGenerationSettings.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	JIPipeAdaptiveParameterSettings.setAttachOnlyNonDefaultParameterAnnotations(boolean attachOnlyNonDefaultParameterAnnotations)
void	JIPipeParameterSlotAlgorithmSettings.setAttachOnlyNonDefaultParameterAnnotations(boolean attachOnlyNonDefaultParameterAnnotations)
void	JIPipeAdaptiveParameterSettings.setAttachParameterAnnotations(boolean attachParameterAnnotations)
void	JIPipeParameterSlotAlgorithmSettings.setAttachParameterAnnotations(boolean attachParameterAnnotations)
void	JIPipeGraphNode.setBookmarked(boolean bookmarked)
void	JIPipeIteratingMissingDataGeneratorDataBatchGenerationSettings.setColumnMatching(JIPipeColumMatching columnMatching)
void	JIPipeIteratingAlgorithmDataBatchGenerationSettings.setColumnMatching(JIPipeColumMatching columnMatching)
void	JIPipeMergingAlgorithmDataBatchGenerationSettings.setColumnMatching(JIPipeColumMatching columnMatching)
void	JIPipeIteratingMissingDataGeneratorDataBatchGenerationSettings.setCustomAnnotationMatching(DefaultExpressionParameter customAnnotationMatching)
void	JIPipeIteratingAlgorithmDataBatchGenerationSettings.setCustomAnnotationMatching(DefaultExpressionParameter customAnnotationMatching)
void	JIPipeMergingAlgorithmDataBatchGenerationSettings.setCustomAnnotationMatching(DefaultExpressionParameter customAnnotationMatching)
void	JIPipeIteratingMissingDataGeneratorDataBatchGenerationSettings.setCustomColumns(StringQueryExpression customColumns)
void	JIPipeIteratingAlgorithmDataBatchGenerationSettings.setCustomColumns(StringQueryExpression customColumns)
void	JIPipeMergingAlgorithmDataBatchGenerationSettings.setCustomColumns(StringQueryExpression customColumns)
void	JIPipeMissingDataGeneratorDataBatchGenerationSettings.setCustomColumns(StringQueryExpression customColumns)
void	JIPipeGraphNode.setCustomDescription(HTMLText customDescription) Sets a custom description.
void	JIPipeGraphNode.setCustomName(String customName) Sets a custom name.
void	JIPipeSingleIterationAlgorithmDataBatchGenerationSettings.setDataAnnotationMergeStrategy(JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy)
void	JIPipeIteratingMissingDataGeneratorDataBatchGenerationSettings.setDataAnnotationMergeStrategy(JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy)
void	JIPipeIteratingAlgorithmDataBatchGenerationSettings.setDataAnnotationMergeStrategy(JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy)
void	JIPipeMergingAlgorithmDataBatchGenerationSettings.setDataAnnotationMergeStrategy(JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy)
void	JIPipeMissingDataGeneratorDataBatchGenerationSettings.setDataAnnotationMergeStrategy(JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy)
void	JIPipeMissingDataGeneratorDataBatchGenerationSettings.setDataSetMatching(JIPipeColumMatching dataSetMatching)
void	JIPipeAlgorithm.setEnabled(boolean enabled)
void	JIPipeAdaptiveParameterSettings.setEnabled(boolean enabled)
void	JIPipeIteratingMissingDataGeneratorDataBatchGenerationSettings.setForceFlowGraphSolver(boolean forceFlowGraphSolver)
void	JIPipeIteratingAlgorithmDataBatchGenerationSettings.setForceFlowGraphSolver(boolean forceFlowGraphSolver)
void	JIPipeMergingAlgorithmDataBatchGenerationSettings.setForceFlowGraphSolver(boolean forceFlowGraphSolver)
void	JIPipeMissingDataGeneratorDataBatchGenerationSettings.setForceFlowGraphSolver(boolean forceFlowGraphSolver)
void	JIPipeParameterSlotAlgorithmSettings.setHasParameterSlot(boolean hasParameterSlot)
void	JIPipeIteratingMissingDataGeneratorAlgorithm.setKeepOriginalAnnotations(boolean keepOriginalAnnotations)
void	JIPipeMissingDataGeneratorAlgorithm.setKeepOriginalAnnotations(boolean keepOriginalAnnotations)
void	JIPipeSimpleIteratingAlgorithmDataBatchGenerationSettings.setLimit(OptionalIntegerRange limit)
void	JIPipeParameterlessSimpleIteratingAlgorithm.DataBatchGenerationSettings.setLimit(OptionalIntegerRange limit)
void	JIPipeIteratingMissingDataGeneratorDataBatchGenerationSettings.setLimit(OptionalIntegerRange limit)
void	JIPipeIteratingAlgorithmDataBatchGenerationSettings.setLimit(OptionalIntegerRange limit)
void	JIPipeMergingAlgorithmDataBatchGenerationSettings.setLimit(OptionalIntegerRange limit)
void	JIPipeMissingDataGeneratorDataBatchGenerationSettings.setLimit(OptionalIntegerRange limit)
void	JIPipeAdaptiveParameterSettings.setOverriddenParameters(StringQueryExpressionAndStringPairParameter.List overriddenParameters)
void	JIPipeSingleIterationAlgorithm.setParallelizationEnabled(boolean parallelizationEnabled)
void	JIPipeIteratingMissingDataGeneratorAlgorithm.setParallelizationEnabled(boolean parallelizationEnabled)
void	JIPipeMergingAlgorithm.setParallelizationEnabled(boolean parallelizationEnabled)
void	JIPipeParameterlessSimpleIteratingAlgorithm.setParallelizationEnabled(boolean parallelizationEnabled)
void	JIPipeMissingDataGeneratorAlgorithm.setParallelizationEnabled(boolean parallelizationEnabled)
void	JIPipeIteratingAlgorithm.setParallelizationEnabled(boolean parallelizationEnabled)
void	JIPipeSimpleIteratingAlgorithm.setParallelizationEnabled(boolean parallelizationEnabled)
void	JIPipeAdaptiveParameterSettings.setParameterAnnotationsPrefix(String parameterAnnotationsPrefix)
void	JIPipeParameterSlotAlgorithmSettings.setParameterAnnotationsPrefix(String parameterAnnotationsPrefix)
void	JIPipeAdaptiveParameterSettings.setParameterAnnotationsUseInternalNames(boolean parameterAnnotationsUseInternalNames)
void	JIPipeParameterSlotAlgorithmSettings.setParameterAnnotationsUseInternalNames(boolean parameterAnnotationsUseInternalNames)
void	JIPipeAlgorithm.setPassThrough(boolean passThrough)
void	JIPipeIteratingAlgorithmDataBatchGenerationSettings.setSkipIncompleteDataSets(boolean skipIncompleteDataSets)
void	JIPipeMergingAlgorithmDataBatchGenerationSettings.setSkipIncompleteDataSets(boolean skipIncompleteDataSets)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.annotation.algorithms

Methods in org.hkijena.jipipe.extensions.annotation.algorithms with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalAnnotationNameParameter	ConvertToAnnotationTable.getAddDataToString()
OptionalStringParameter	ExtractDataAnnotation.getAnnotateWithCurrentData()
AnnotationQueryExpression	RemoveAnnotationAlgorithm.getAnnotationExpression()
AnnotationQueryExpression	SimplifyAnnotationsAlgorithm.getAnnotationFilter()
JIPipeDataAnnotationMergeMode	RenameDataAnnotation.getAnnotationMergeStrategy()
JIPipeTextAnnotationMergeMode	GenerateRandomUniqueAnnotation.getAnnotationMergeStrategy()
JIPipeTextAnnotationMergeMode	GenerateUniqueAnnotation.getAnnotationMergeStrategy()
JIPipeTextAnnotationMergeMode	AnnotateWithData.getAnnotationMergeStrategy()
JIPipeTextAnnotationMergeMode	AnnotateWithSourceSlot.getAnnotationMergeStrategy()
JIPipeTextAnnotationMergeMode	DataAnnotationToStringAnnotation.getAnnotationMergeStrategy()
JIPipeTextAnnotationMergeMode	AnnotateByExpression.getAnnotationMergeStrategy()
JIPipeTextAnnotationMergeMode	RenameAnnotation.getAnnotationMergeStrategy()
JIPipeTextAnnotationMergeMode	AnnotateWithDataString.getAnnotationMergeStrategy()
JIPipeTextAnnotationMergeMode	ExtractAndReplaceAnnotation.getAnnotationMergeStrategy()
String	AnnotateWithData.getAnnotationName()
StringQueryExpression	SetSingleAnnotation.getAnnotationName()
StringQueryExpression	RemoveArrayAnnotationsAlgorithm.getAnnotationNameFilter()
StringQueryExpression	RemoveNAAnnotationColumnsAlgorithm.getAnnotationNameFilter()
StringQueryExpression	ExtractDataAnnotation.getAnnotationNameQuery()
SimplifyAnnotationsAlgorithm.AnnotationRemovalMode	SimplifyAnnotationsAlgorithm.getAnnotationRemovalMode()
NamedTextAnnotationGeneratorExpression.List	AnnotateByExpression.getAnnotations()
StringQueryExpression	SetSingleAnnotation.getAnnotationValue()
String	GenerateUniqueAnnotation.getBaseName()
PythonScript	SplitByAnnotationScript.getCode()
PythonScript	ModifyAnnotationScript.getCode()
DefaultExpressionParameter	SimplifyAnnotationsAlgorithm.getCombinationFunction()
CustomExpressionVariablesParameter	SplitByAnnotation.getCustomVariables()
CustomExpressionVariablesParameter	AnnotateByExpression.getCustomVariables()
CustomExpressionVariablesParameter	FilterByAnnotation.getCustomVariables()
CustomExpressionVariablesParameter	OverwriteAnnotations.getCustomVariables()
AnnotationFilterExpression	FilterByAnnotation.getFilter()
StringPatternExtractionFunction.List	ExtractAndReplaceAnnotation.getFunctions()
String	GenerateRandomUniqueAnnotation.getGeneratedAnnotation()
String	GenerateUniqueAnnotation.getGeneratedAnnotation()
String	AnnotateWithSourceSlot.getGeneratedAnnotation()
String	AnnotateWithDataString.getGeneratedAnnotation()
String	SimplifyAnnotationsAlgorithm.getGeneratedAnnotationName()
JIPipeTextAnnotationMergeMode	OverwriteAnnotations.getMergeMode()
StringQueryExpression	DataAnnotationToStringAnnotation.getNameFilter()
StringQueryExpression	RemoveDataAnnotations.getNameFilter()
DefaultExpressionParameter	OverwriteAnnotations.getRemoveExistingAnnotationsFilter()
StringQueryExpression	SimplifyAnnotationsAlgorithm.getRenameFunction()
StringQueryExpressionAndStringPairParameter.List	RenameDataAnnotation.getRenamingItems()
StringQueryExpressionAndStringPairParameter.List	RenameAnnotation.getRenamingItems()
JIPipeDynamicParameterCollection	SplitByAnnotationScript.getScriptParameters()
JIPipeDynamicParameterCollection	ModifyAnnotationScript.getScriptParameters()
DefaultExpressionParameter	OverwriteAnnotations.getSourceAnnotationFilter()
JIPipeIteratingAlgorithmDataBatchGenerationSettings	AnnotateWithAnnotationTable.getTableMergeSettings()
OutputSlotMapParameterCollection	SplitByAnnotation.getTargetSlots()
boolean	AnnotateWithDataString.isDetailedDataString()
boolean	AnnotateWithAnnotationTable.isDiscardExistingAnnotations()
boolean	ExtractDataAnnotation.isIgnoreMissingAnnotations()
boolean	ExtractDataAnnotation.isKeepCurrentAnnotation()
boolean	DataAnnotationToStringAnnotation.isKeepDataAnnotations()
boolean	ExtractDataAnnotation.isKeepOtherDataAnnotations()
boolean	AnnotateWithData.isMergeInputAnnotations()
boolean	AnnotateWithData.isMergeLabelAnnotations()
boolean	RemoveArrayAnnotationsAlgorithm.isRemoveColumn()
boolean	ConvertToAnnotationTable.isRemoveOutputAnnotations()
void	ConvertToAnnotationTable.setAddDataToString(OptionalAnnotationNameParameter addDataToString)
void	ExtractDataAnnotation.setAnnotateWithCurrentData(OptionalStringParameter annotateWithCurrentData)
void	RemoveAnnotationAlgorithm.setAnnotationExpression(AnnotationQueryExpression annotationExpression)
void	SimplifyAnnotationsAlgorithm.setAnnotationFilter(AnnotationQueryExpression annotationFilter)
void	RenameDataAnnotation.setAnnotationMergeStrategy(JIPipeDataAnnotationMergeMode annotationMergeStrategy)
void	GenerateRandomUniqueAnnotation.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	GenerateUniqueAnnotation.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	AnnotateWithData.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	AnnotateWithSourceSlot.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	DataAnnotationToStringAnnotation.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	AnnotateByExpression.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	RenameAnnotation.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	AnnotateWithDataString.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	ExtractAndReplaceAnnotation.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	AnnotateWithData.setAnnotationName(String annotationName)
void	SetSingleAnnotation.setAnnotationName(StringQueryExpression annotationName)
void	RemoveArrayAnnotationsAlgorithm.setAnnotationNameFilter(StringQueryExpression annotationNameFilter)
void	RemoveNAAnnotationColumnsAlgorithm.setAnnotationNameFilter(StringQueryExpression annotationNameFilter)
void	ExtractDataAnnotation.setAnnotationNameQuery(StringQueryExpression annotationNameQuery)
void	SimplifyAnnotationsAlgorithm.setAnnotationRemovalMode(SimplifyAnnotationsAlgorithm.AnnotationRemovalMode annotationRemovalMode)
void	AnnotateByExpression.setAnnotations(NamedTextAnnotationGeneratorExpression.List annotations)
void	SetSingleAnnotation.setAnnotationValue(StringQueryExpression annotationValue)
void	GenerateUniqueAnnotation.setBaseName(String baseName)
void	SplitByAnnotationScript.setCode(PythonScript code)
void	ModifyAnnotationScript.setCode(PythonScript code)
void	SimplifyAnnotationsAlgorithm.setCombinationFunction(DefaultExpressionParameter combinationFunction)
void	AnnotateWithDataString.setDetailedDataString(boolean detailedDataString)
void	AnnotateWithAnnotationTable.setDiscardExistingAnnotations(boolean discardExistingAnnotations)
void	FilterByAnnotation.setFilter(AnnotationFilterExpression filter)
void	ExtractAndReplaceAnnotation.setFunctions(StringPatternExtractionFunction.List functions)
void	GenerateRandomUniqueAnnotation.setGeneratedAnnotation(String generatedAnnotation) Sets generated annotation type
void	GenerateUniqueAnnotation.setGeneratedAnnotation(String generatedAnnotation) Sets generated annotation type
void	AnnotateWithSourceSlot.setGeneratedAnnotation(String generatedAnnotation) Sets generated annotation type
void	AnnotateWithDataString.setGeneratedAnnotation(String generatedAnnotation) Sets generated annotation type
void	SimplifyAnnotationsAlgorithm.setGeneratedAnnotationName(String generatedAnnotationName)
void	ExtractDataAnnotation.setIgnoreMissingAnnotations(boolean ignoreMissingAnnotations)
void	ExtractDataAnnotation.setKeepCurrentAnnotation(boolean keepCurrentAnnotation)
void	DataAnnotationToStringAnnotation.setKeepDataAnnotations(boolean keepDataAnnotations)
void	ExtractDataAnnotation.setKeepOtherDataAnnotations(boolean keepOtherDataAnnotations)
void	AnnotateWithData.setMergeInputAnnotations(boolean mergeInputAnnotations)
void	AnnotateWithData.setMergeLabelAnnotations(boolean mergeLabelAnnotations)
void	OverwriteAnnotations.setMergeMode(JIPipeTextAnnotationMergeMode mergeMode)
void	DataAnnotationToStringAnnotation.setNameFilter(StringQueryExpression nameFilter)
void	RemoveDataAnnotations.setNameFilter(StringQueryExpression nameFilter)
void	RemoveArrayAnnotationsAlgorithm.setRemoveColumn(boolean removeColumn)
void	OverwriteAnnotations.setRemoveExistingAnnotationsFilter(DefaultExpressionParameter removeExistingAnnotationsFilter)
void	ConvertToAnnotationTable.setRemoveOutputAnnotations(boolean removeOutputAnnotations)
void	SimplifyAnnotationsAlgorithm.setRenameFunction(StringQueryExpression renameFunction)
void	RenameDataAnnotation.setRenamingItems(StringQueryExpressionAndStringPairParameter.List renamingItems)
void	RenameAnnotation.setRenamingItems(StringQueryExpressionAndStringPairParameter.List renamingItems)
void	OverwriteAnnotations.setSourceAnnotationFilter(DefaultExpressionParameter sourceAnnotationFilter)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.cellpose

Methods in org.hkijena.jipipe.extensions.cellpose with annotations of type JIPipeParameter

Modifier and Type	Method and Description
StringList	CellposeSettings.getEasyInstallerRepositories()
OptionalPythonEnvironment	CellposeSettings.getOverridePythonEnvironment()
void	CellposeSettings.setEasyInstallerRepositories(StringList easyInstallerRepositories)
void	CellposeSettings.setOverridePythonEnvironment(OptionalPythonEnvironment overridePythonEnvironment)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.cellpose.algorithms

Methods in org.hkijena.jipipe.extensions.cellpose.algorithms with annotations of type JIPipeParameter

Modifier and Type	Method and Description
CellposeChannelSettings	CellposeTrainingAlgorithm.getChannelSettings()
CellposeChannelSettings	CellposeAlgorithm.getChannelSettings()
OptionalDoubleParameter	CellposeTrainingAlgorithm.getDiameter()
OptionalDoubleParameter	CellposeAlgorithm.getDiameter()
OptionalAnnotationNameParameter	CellposeAlgorithm.getDiameterAnnotation()
CellposeSegmentationTweaksSettings	CellposeAlgorithm.getEnhancementParameters()
CellposeGPUSettings	CellposeTrainingAlgorithm.getGpuSettings()
CellposeGPUSettings	CellposeAlgorithm.getGpuSettings()
DataAnnotationQueryExpression	CellposeTrainingAlgorithm.getLabelDataAnnotation()
CellposeModel	CellposeAlgorithm.getModel()
int	CellposeTrainingAlgorithm.getNumEpochs()
OptionalPythonEnvironment	CellposeTrainingAlgorithm.getOverrideEnvironment()
OptionalPythonEnvironment	CellposeAlgorithm.getOverrideEnvironment()
CellposePretrainedModel	CellposeTrainingAlgorithm.getPretrainedModel()
CellposeSegmentationOutputSettings	CellposeAlgorithm.getSegmentationOutputSettings()
CellposeSegmentationThresholdSettings	CellposeAlgorithm.getThresholdParameters()
CellposeTrainingTweaksSettings	CellposeTrainingAlgorithm.getTweaksSettings()
boolean	CellposeTrainingAlgorithm.isCleanUpAfterwards()
boolean	CellposeAlgorithm.isCleanUpAfterwards()
boolean	CellposeTrainingAlgorithm.isEnable3DSegmentation()
boolean	CellposeAlgorithm.isEnable3DSegmentation()
boolean	CellposeTrainingAlgorithm.isTrainSizeModel()
void	CellposeTrainingAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards)
void	CellposeAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards)
void	CellposeTrainingAlgorithm.setDiameter(OptionalDoubleParameter diameter)
void	CellposeAlgorithm.setDiameter(OptionalDoubleParameter diameter)
void	CellposeAlgorithm.setDiameterAnnotation(OptionalAnnotationNameParameter diameterAnnotation)
void	CellposeTrainingAlgorithm.setEnable3DSegmentation(boolean enable3DSegmentation)
void	CellposeAlgorithm.setEnable3DSegmentation(boolean enable3DSegmentation)
void	CellposeTrainingAlgorithm.setLabelDataAnnotation(DataAnnotationQueryExpression labelDataAnnotation)
void	CellposeAlgorithm.setModel(CellposeModel model)
void	CellposeTrainingAlgorithm.setNumEpochs(int numEpochs)
void	CellposeTrainingAlgorithm.setOverrideEnvironment(OptionalPythonEnvironment overrideEnvironment)
void	CellposeAlgorithm.setOverrideEnvironment(OptionalPythonEnvironment overrideEnvironment)
void	CellposeTrainingAlgorithm.setPretrainedModel(CellposePretrainedModel pretrainedModel)
void	CellposeTrainingAlgorithm.setTrainSizeModel(boolean trainSizeModel)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.cellpose.algorithms.deprecated

Methods in org.hkijena.jipipe.extensions.cellpose.algorithms.deprecated with annotations of type JIPipeParameter

Modifier and Type	Method and Description
int	CellposeTrainingAlgorithm_Old.getBatchSize() Deprecated.
int	CellposeTrainingAlgorithm_Old.getDiameter() Deprecated.
OptionalDoubleParameter	CellposeAlgorithm_Old.getDiameter() Deprecated.
OptionalAnnotationNameParameter	CellposeAlgorithm_Old.getDiameterAnnotation() Deprecated.
CellposeSegmentationEnhancementSettings_Old	CellposeAlgorithm_Old.getEnhancementParameters() Deprecated.
CellposeGPUSettings	CellposeTrainingAlgorithm_Old.getGpuSettings() Deprecated.
DataAnnotationQueryExpression	CellposeTrainingAlgorithm_Old.getLabelDataAnnotation() Deprecated.
double	CellposeTrainingAlgorithm_Old.getLearningRate() Deprecated.
int	CellposeTrainingAlgorithm_Old.getMinTrainMasks() Deprecated.
CellposeSegmentationModelSettings_Old	CellposeAlgorithm_Old.getModelParameters() Deprecated.
OptionalIntegerParameter	CellposeTrainingAlgorithm_Old.getNuclearChannel() Deprecated.
int	CellposeTrainingAlgorithm_Old.getNumEpochs() Deprecated.
CellposeSegmentationOutputSettings_Old	CellposeAlgorithm_Old.getOutputParameters() Deprecated.
OptionalPythonEnvironment	CellposeTrainingAlgorithm_Old.getOverrideEnvironment() Deprecated.
OptionalPythonEnvironment	CellposeAlgorithm_Old.getOverrideEnvironment() Deprecated.
CellposeSegmentationPerformanceSettings_Old	CellposeAlgorithm_Old.getPerformanceParameters() Deprecated.
CellposePretrainedModel	CellposeTrainingAlgorithm_Old.getPretrainedModel() Deprecated.
OptionalIntegerParameter	CellposeTrainingAlgorithm_Old.getSegmentedChannel() Deprecated.
CellposeSegmentationThresholdSettings_Old	CellposeAlgorithm_Old.getThresholdParameters() Deprecated.
double	CellposeTrainingAlgorithm_Old.getWeightDecay() Deprecated.
boolean	CellposeTrainingAlgorithm_Old.isCleanUpAfterwards() Deprecated.
boolean	CellposeAlgorithm_Old.isCleanUpAfterwards() Deprecated.
boolean	CellposeTrainingAlgorithm_Old.isConcatenateDownsampledLayers() Deprecated.
boolean	CellposeTrainingAlgorithm_Old.isEnable3DSegmentation() Deprecated.
boolean	CellposeAlgorithm_Old.isEnable3DSegmentation() Deprecated.
boolean	CellposeTrainingAlgorithm_Old.isGenerateConnectedComponents() Deprecated.
boolean	CellposeTrainingAlgorithm_Old.isTrainSizeModel() Deprecated.
boolean	CellposeTrainingAlgorithm_Old.isUseResidualConnections() Deprecated.
boolean	CellposeTrainingAlgorithm_Old.isUseStyleVector() Deprecated.
void	CellposeTrainingAlgorithm_Old.setBatchSize(int batchSize) Deprecated.
void	CellposeTrainingAlgorithm_Old.setCleanUpAfterwards(boolean cleanUpAfterwards) Deprecated.
void	CellposeAlgorithm_Old.setCleanUpAfterwards(boolean cleanUpAfterwards) Deprecated.
void	CellposeTrainingAlgorithm_Old.setConcatenateDownsampledLayers(boolean concatenateDownsampledLayers) Deprecated.
void	CellposeTrainingAlgorithm_Old.setDiameter(int diameter) Deprecated.
void	CellposeAlgorithm_Old.setDiameter(OptionalDoubleParameter diameter) Deprecated.
void	CellposeAlgorithm_Old.setDiameterAnnotation(OptionalAnnotationNameParameter diameterAnnotation) Deprecated.
void	CellposeTrainingAlgorithm_Old.setEnable3DSegmentation(boolean enable3DSegmentation) Deprecated.
void	CellposeAlgorithm_Old.setEnable3DSegmentation(boolean enable3DSegmentation) Deprecated.
void	CellposeTrainingAlgorithm_Old.setGenerateConnectedComponents(boolean generateConnectedComponents) Deprecated.
void	CellposeTrainingAlgorithm_Old.setLabelDataAnnotation(DataAnnotationQueryExpression labelDataAnnotation) Deprecated.
void	CellposeTrainingAlgorithm_Old.setLearningRate(double learningRate) Deprecated.
void	CellposeTrainingAlgorithm_Old.setMinTrainMasks(int minTrainMasks) Deprecated.
void	CellposeTrainingAlgorithm_Old.setNuclearChannel(OptionalIntegerParameter nuclearChannel) Deprecated.
void	CellposeTrainingAlgorithm_Old.setNumEpochs(int numEpochs) Deprecated.
void	CellposeTrainingAlgorithm_Old.setOverrideEnvironment(OptionalPythonEnvironment overrideEnvironment) Deprecated.
void	CellposeAlgorithm_Old.setOverrideEnvironment(OptionalPythonEnvironment overrideEnvironment) Deprecated.
void	CellposeTrainingAlgorithm_Old.setPretrainedModel(CellposePretrainedModel pretrainedModel) Deprecated.
void	CellposeTrainingAlgorithm_Old.setSegmentedChannel(OptionalIntegerParameter segmentedChannel) Deprecated.
void	CellposeTrainingAlgorithm_Old.setTrainSizeModel(boolean trainSizeModel) Deprecated.
void	CellposeTrainingAlgorithm_Old.setUseResidualConnections(boolean useResidualConnections) Deprecated.
void	CellposeTrainingAlgorithm_Old.setUseStyleVector(boolean useStyleVector) Deprecated.
void	CellposeTrainingAlgorithm_Old.setWeightDecay(double weightDecay) Deprecated.

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.cellpose.installers

Methods in org.hkijena.jipipe.extensions.cellpose.installers with annotations of type JIPipeParameter

Modifier and Type	Method and Description
String	MinicondaCellposeGPUEnvInstaller.Configuration.getCudaToolkitVersion()
String	PortableCellposeGPUEnvInstaller.Configuration.getPyTorchPipPackage()
void	MinicondaCellposeGPUEnvInstaller.Configuration.setCudaToolkitVersion(String cudaToolkitVersion)
void	PortableCellposeGPUEnvInstaller.Configuration.setPyTorchPipPackage(String pyTorchPipPackage)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.cellpose.parameters

Methods in org.hkijena.jipipe.extensions.cellpose.parameters with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalDoubleParameter	CellposeSegmentationTweaksSettings.getAnisotropy()
int	CellposeTrainingTweaksSettings.getBatchSize()
double	CellposeSegmentationThresholdSettings.getCellProbabilityThreshold()
double	CellposeSegmentationThresholdSettings.getFlowThreshold()
OptionalIntegerParameter	CellposeGPUSettings.getGpuDevice()
double	CellposeTrainingTweaksSettings.getLearningRate()
int	CellposeTrainingTweaksSettings.getMinTrainMasks()
OptionalIntegerParameter	CellposeChannelSettings.getNuclearChannel()
OptionalIntegerParameter	CellposeChannelSettings.getSegmentedChannel()
OptionalDoubleParameter	CellposeSegmentationThresholdSettings.getStitchThreshold()
double	CellposeTrainingTweaksSettings.getWeightDecay()
boolean	CellposeChannelSettings.isAllChannels()
boolean	CellposeTrainingTweaksSettings.isConcatenateDownsampledLayers()
boolean	CellposeSegmentationTweaksSettings.isDisableResample()
boolean	CellposeGPUSettings.isEnableGPU()
boolean	CellposeSegmentationThresholdSettings.isExcludeOnEdges()
boolean	CellposeTrainingTweaksSettings.isGenerateConnectedComponents()
boolean	CellposeSegmentationTweaksSettings.isInterpolate()
boolean	CellposeChannelSettings.isInvert()
boolean	CellposeSegmentationTweaksSettings.isNetAverage()
boolean	CellposeSegmentationTweaksSettings.isNormalize()
boolean	CellposeSegmentationOutputSettings.isOutputFlowsD()
boolean	CellposeSegmentationOutputSettings.isOutputFlowsXY()
boolean	CellposeSegmentationOutputSettings.isOutputFlowsZ()
boolean	CellposeSegmentationOutputSettings.isOutputLabels()
boolean	CellposeSegmentationOutputSettings.isOutputProbabilities()
boolean	CellposeSegmentationOutputSettings.isOutputROI()
boolean	CellposeTrainingTweaksSettings.isUseResidualConnections()
boolean	CellposeTrainingTweaksSettings.isUseStyleVector()
void	CellposeChannelSettings.setAllChannels(boolean allChannels)
void	CellposeSegmentationTweaksSettings.setAnisotropy(OptionalDoubleParameter anisotropy)
void	CellposeTrainingTweaksSettings.setBatchSize(int batchSize)
void	CellposeSegmentationThresholdSettings.setCellProbabilityThreshold(double cellProbabilityThreshold)
void	CellposeTrainingTweaksSettings.setConcatenateDownsampledLayers(boolean concatenateDownsampledLayers)
void	CellposeSegmentationTweaksSettings.setDisableResample(boolean disableResample)
void	CellposeGPUSettings.setEnableGPU(boolean enableGPU)
void	CellposeSegmentationThresholdSettings.setExcludeOnEdges(boolean excludeOnEdges)
void	CellposeSegmentationThresholdSettings.setFlowThreshold(double flowThreshold)
void	CellposeTrainingTweaksSettings.setGenerateConnectedComponents(boolean generateConnectedComponents)
void	CellposeGPUSettings.setGpuDevice(OptionalIntegerParameter gpuDevice)
void	CellposeSegmentationTweaksSettings.setInterpolate(boolean interpolate)
void	CellposeChannelSettings.setInvert(boolean invert)
void	CellposeTrainingTweaksSettings.setLearningRate(double learningRate)
void	CellposeTrainingTweaksSettings.setMinTrainMasks(int minTrainMasks)
void	CellposeSegmentationTweaksSettings.setNetAverage(boolean netAverage)
void	CellposeSegmentationTweaksSettings.setNormalize(boolean normalize)
void	CellposeChannelSettings.setNuclearChannel(OptionalIntegerParameter nuclearChannel)
void	CellposeSegmentationOutputSettings.setOutputFlowsD(boolean outputFlowsD)
void	CellposeSegmentationOutputSettings.setOutputFlowsXY(boolean outputFlowsXY)
void	CellposeSegmentationOutputSettings.setOutputFlowsZ(boolean outputFlowsZ)
void	CellposeSegmentationOutputSettings.setOutputLabels(boolean outputLabels)
void	CellposeSegmentationOutputSettings.setOutputProbabilities(boolean outputProbabilities)
void	CellposeSegmentationOutputSettings.setOutputROI(boolean outputROI)
void	CellposeChannelSettings.setSegmentedChannel(OptionalIntegerParameter segmentedChannel)
void	CellposeSegmentationThresholdSettings.setStitchThreshold(OptionalDoubleParameter stitchThreshold)
void	CellposeTrainingTweaksSettings.setUseResidualConnections(boolean useResidualConnections)
void	CellposeTrainingTweaksSettings.setUseStyleVector(boolean useStyleVector)
void	CellposeTrainingTweaksSettings.setWeightDecay(double weightDecay)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.cellpose.parameters.deprecated

Methods in org.hkijena.jipipe.extensions.cellpose.parameters.deprecated with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalDoubleParameter	CellposeSegmentationEnhancementSettings_Old.getAnisotropy() Deprecated.
int	CellposeSegmentationPerformanceSettings_Old.getBatchSize() Deprecated.
double	CellposeSegmentationThresholdSettings_Old.getCellProbabilityThreshold() Deprecated.
double	CellposeSegmentationThresholdSettings_Old.getFlowThreshold() Deprecated.
double	CellposeSegmentationModelSettings_Old.getMeanDiameter() Deprecated.
int	CellposeSegmentationThresholdSettings_Old.getMinSize() Deprecated.
CellposeModel	CellposeSegmentationModelSettings_Old.getModel() Deprecated.
double	CellposeSegmentationThresholdSettings_Old.getStitchThreshold() Deprecated.
double	CellposeSegmentationPerformanceSettings_Old.getTileOverlap() Deprecated.
boolean	CellposeSegmentationEnhancementSettings_Old.isAugment() Deprecated.
boolean	CellposeSegmentationModelSettings_Old.isEnableGPU() Deprecated.
boolean	CellposeSegmentationEnhancementSettings_Old.isInterpolate() Deprecated.
boolean	CellposeSegmentationEnhancementSettings_Old.isNetAverage() Deprecated.
boolean	CellposeSegmentationEnhancementSettings_Old.isNormalize() Deprecated.
boolean	CellposeSegmentationOutputSettings_Old.isOutputFlows() Deprecated.
boolean	CellposeSegmentationOutputSettings_Old.isOutputLabels() Deprecated.
boolean	CellposeSegmentationOutputSettings_Old.isOutputProbabilities() Deprecated.
boolean	CellposeSegmentationOutputSettings_Old.isOutputROI() Deprecated.
boolean	CellposeSegmentationOutputSettings_Old.isOutputStyles() Deprecated.
boolean	CellposeSegmentationPerformanceSettings_Old.isResample() Deprecated.
boolean	CellposeSegmentationPerformanceSettings_Old.isTile() Deprecated.
void	CellposeSegmentationEnhancementSettings_Old.setAnisotropy(OptionalDoubleParameter anisotropy) Deprecated.
void	CellposeSegmentationEnhancementSettings_Old.setAugment(boolean augment) Deprecated.
void	CellposeSegmentationPerformanceSettings_Old.setBatchSize(int batchSize) Deprecated.
void	CellposeSegmentationThresholdSettings_Old.setCellProbabilityThreshold(double cellProbabilityThreshold) Deprecated.
void	CellposeSegmentationModelSettings_Old.setEnableGPU(boolean enableGPU) Deprecated.
void	CellposeSegmentationThresholdSettings_Old.setFlowThreshold(double flowThreshold) Deprecated.
void	CellposeSegmentationEnhancementSettings_Old.setInterpolate(boolean interpolate) Deprecated.
void	CellposeSegmentationModelSettings_Old.setMeanDiameter(double meanDiameter) Deprecated.
void	CellposeSegmentationThresholdSettings_Old.setMinSize(int minSize) Deprecated.
void	CellposeSegmentationModelSettings_Old.setModel(CellposeModel model) Deprecated.
void	CellposeSegmentationEnhancementSettings_Old.setNetAverage(boolean netAverage) Deprecated.
void	CellposeSegmentationEnhancementSettings_Old.setNormalize(boolean normalize) Deprecated.
void	CellposeSegmentationOutputSettings_Old.setOutputFlows(boolean outputFlows) Deprecated.
void	CellposeSegmentationOutputSettings_Old.setOutputLabels(boolean outputLabels) Deprecated.
void	CellposeSegmentationOutputSettings_Old.setOutputProbabilities(boolean outputProbabilities) Deprecated.
void	CellposeSegmentationOutputSettings_Old.setOutputROI(boolean outputROI) Deprecated.
void	CellposeSegmentationOutputSettings_Old.setOutputStyles(boolean outputStyles) Deprecated.
void	CellposeSegmentationPerformanceSettings_Old.setResample(boolean resample) Deprecated.
void	CellposeSegmentationThresholdSettings_Old.setStitchThreshold(double stitchThreshold) Deprecated.
void	CellposeSegmentationPerformanceSettings_Old.setTile(boolean tile) Deprecated.
void	CellposeSegmentationPerformanceSettings_Old.setTileOverlap(double tileOverlap) Deprecated.

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.clij2

Methods in org.hkijena.jipipe.extensions.clij2 with annotations of type JIPipeParameter

Modifier and Type	Method and Description
ImageJCalibrationMode	CLIJSettings.ContrastEnhancerSettings.getCalibrationMode()
JIPipeDynamicParameterCollection	CLIJCommandNode.getClijParameters()
CLIJSettings.ContrastEnhancerSettings	CLIJSettings.getContrastEnhancerSettings()
double	CLIJSettings.ContrastEnhancerSettings.getCustomMax()
double	CLIJSettings.ContrastEnhancerSettings.getCustomMin()
int	CLIJSettings.getDevice()
boolean	CLIJSettings.ContrastEnhancerSettings.isApplyToAllPlanes()
boolean	CLIJSettings.isAutoCalibrateAfterPulling()
boolean	CLIJSettings.ContrastEnhancerSettings.isDuplicateImage()
void	CLIJSettings.ContrastEnhancerSettings.setApplyToAllPlanes(boolean applyToAllPlanes)
void	CLIJSettings.setAutoCalibrateAfterPulling(boolean autoCalibrateAfterPulling)
void	CLIJSettings.ContrastEnhancerSettings.setCalibrationMode(ImageJCalibrationMode calibrationMode)
void	CLIJSettings.ContrastEnhancerSettings.setCustomMax(double customMax)
void	CLIJSettings.ContrastEnhancerSettings.setCustomMin(double customMin)
void	CLIJSettings.setDevice(int device)
void	CLIJSettings.ContrastEnhancerSettings.setDuplicateImage(boolean duplicateImage)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.clij2.algorithms

Methods in org.hkijena.jipipe.extensions.clij2.algorithms with annotations of type JIPipeParameter

Modifier and Type	Method and Description
String	Clij2ExecuteKernelIterating.getKernelFunction()
String	Clij2ExecuteKernelSimpleIterating.getKernelFunction()
OpenCLKernelScript	Clij2ExecuteKernelIterating.getKernelScript()
OpenCLKernelScript	Clij2ExecuteKernelSimpleIterating.getKernelScript()
PythonScript	Clij2ExecuteKernelIterating.getPreprocessingScript()
PythonScript	Clij2ExecuteKernelSimpleIterating.getPreprocessingScript()
JIPipeDynamicParameterCollection	Clij2ExecuteKernelIterating.getScriptParameters()
JIPipeDynamicParameterCollection	Clij2ExecuteKernelSimpleIterating.getScriptParameters()
void	Clij2ExecuteKernelIterating.setKernelFunction(String kernelFunction)
void	Clij2ExecuteKernelSimpleIterating.setKernelFunction(String kernelFunction)
void	Clij2ExecuteKernelIterating.setKernelScript(OpenCLKernelScript kernelScript)
void	Clij2ExecuteKernelSimpleIterating.setKernelScript(OpenCLKernelScript kernelScript)
void	Clij2ExecuteKernelIterating.setPreprocessingScript(PythonScript preprocessingScript)
void	Clij2ExecuteKernelSimpleIterating.setPreprocessingScript(PythonScript preprocessingScript)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.core.nodes

Methods in org.hkijena.jipipe.extensions.core.nodes with annotations of type JIPipeParameter

Modifier and Type	Method and Description
Color	JIPipeCommentNode.getBackgroundColor()
IconRef	JIPipeCommentNode.getIcon()
Color	JIPipeCommentNode.getTextColor()
void	JIPipeCommentNode.setBackgroundColor(Color backgroundColor)
void	JIPipeCommentNode.setIcon(IconRef icon)
void	JIPipeCommentNode.setTextColor(Color textColor)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.filesystem

Methods in org.hkijena.jipipe.extensions.filesystem with annotations of type JIPipeParameter

Modifier and Type	Method and Description
boolean	FilesystemExtensionSettings.isAutoLabelOutputWithFileName()
boolean	FilesystemExtensionSettings.isRelativizePaths()
void	FilesystemExtensionSettings.setAutoLabelOutputWithFileName(boolean autoLabelOutputWithFileName)
void	FilesystemExtensionSettings.setRelativizePaths(boolean relativizePaths)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.filesystem.algorithms

Methods in org.hkijena.jipipe.extensions.filesystem.algorithms with annotations of type JIPipeParameter

Modifier and Type	Method and Description
AnnotationQueryExpression	AnnotationToPath.getAnnotationExpression()
JIPipeTextAnnotationMergeMode	SimplePathAnnotationGenerator.getAnnotationMergeStrategy()
StringAndStringPairParameter.List	ImportDataRowFolder.getAnnotations()
TableColumnSourceExpressionParameter	AnnotationTableToPaths.getColumn()
JIPipeDataAnnotationMergeMode	ImportDataTableDirectory.getDataAnnotationMergeMode()
JIPipeDataAnnotationMergeMode	ImportDataTableArchive.getDataAnnotationMergeMode()
JIPipeDataInfoRef	ImportDataRowFolder.getDataType()
JIPipeDataByMetadataExporter	ExportData.getExporter()
JIPipeDataByMetadataExporter	ExportDataByParameter.getExporter()
PathQueryExpression	ModifyPath.getExpression()
OptionalAnnotationNameParameter	AnnotateWithPathProperties.getFileNameAnnotation()
PathQueryExpression	FilterPaths.getFilters()
PathQueryExpression	ListFiles.getFilters()
PathQueryExpression	ListSubfolders.getFilters()
String	SimpleFolderAnnotationGenerator.getGeneratedAnnotation()
String	SimplePathAnnotationGenerator.getGeneratedAnnotation()
String	SimpleFileAnnotationGenerator.getGeneratedAnnotation()
String	ImportDataTableArchive.getInternalPath()
OptionalAnnotationNameParameter	AnnotateWithPathProperties.getLastModifiedTime()
int	ExtractParent.getOrder()
Path	ExportDataByParameter.getOutputDirectory()
Path	ExportDataTableByParameter.getOutputDirectory()
Path	RelativizeByParameter.getParentPath()
OptionalAnnotationNameParameter	AnnotateWithPathProperties.getParentPathAnnotation()
String	RenameByString.getPathName()
OptionalAnnotationNameParameter	AnnotateWithPathProperties.getSizeAnnotation()
String	ListFiles.getSubFolder()
String	ListSubfolders.getSubFolder()
Path	ConcatenateByParameter.getSubPath()
JIPipeTextAnnotationMergeMode	ImportDataTableDirectory.getTextAnnotationMergeMode()
JIPipeTextAnnotationMergeMode	ImportDataTableArchive.getTextAnnotationMergeMode()
OptionalAnnotationNameParameter	AnnotateWithPathProperties.getTypeAnnotation()
boolean	ModifyPath.isAccessAnnotations()
boolean	CopyPath.isAppendDirectoryNameToTarget()
boolean	SimplePathAnnotationGenerator.isFullPath()
boolean	ImportDataTableDirectory.isIgnoreImportedDataAnnotations()
boolean	ImportDataTableArchive.isIgnoreImportedDataAnnotations()
boolean	ImportDataTableDirectory.isIgnoreImportedTextAnnotations()
boolean	ImportDataTableArchive.isIgnoreImportedTextAnnotations()
boolean	ImportDataTableDirectory.isIgnoreInputDataAnnotations()
boolean	ImportDataTableArchive.isIgnoreInputDataAnnotations()
boolean	ImportDataTableDirectory.isIgnoreInputTextAnnotations()
boolean	ImportDataTableArchive.isIgnoreInputTextAnnotations()
boolean	FilterPaths.isOutputFiles()
boolean	FilterPaths.isOutputFolders()
boolean	FilterPaths.isOutputNonExisting()
boolean	ListFiles.isRecursive()
boolean	ListSubfolders.isRecursive()
boolean	ListFiles.isRecursiveFollowsLinks()
boolean	ListSubfolders.isRecursiveFollowsLinks()
boolean	ExportDataByParameter.isRelativeToProjectDir()
boolean	ExportDataTableByParameter.isRelativeToProjectDir()
boolean	SimplePathAnnotationGenerator.isRemoveExtensions()
boolean	CopyPath.isSkipExisting()
boolean	CopyPath.isSkipInvalid()
boolean	ExportData.isSplitBySlotName()
boolean	ExportDataByParameter.isSplitBySlotName()
boolean	CreateDirectory.isWithParents()
void	ModifyPath.setAccessAnnotations(boolean accessAnnotations)
void	AnnotationToPath.setAnnotationExpression(AnnotationQueryExpression annotationExpression)
void	SimplePathAnnotationGenerator.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	ImportDataRowFolder.setAnnotations(StringAndStringPairParameter.List annotations)
void	CopyPath.setAppendDirectoryNameToTarget(boolean appendDirectoryNameToTarget)
void	AnnotationTableToPaths.setColumn(TableColumnSourceExpressionParameter column)
void	ImportDataTableDirectory.setDataAnnotationMergeMode(JIPipeDataAnnotationMergeMode dataAnnotationMergeMode)
void	ImportDataTableArchive.setDataAnnotationMergeMode(JIPipeDataAnnotationMergeMode dataAnnotationMergeMode)
void	ImportDataRowFolder.setDataType(JIPipeDataInfoRef dataType)
void	ModifyPath.setExpression(PathQueryExpression expression)
void	AnnotateWithPathProperties.setFileNameAnnotation(OptionalAnnotationNameParameter fileNameAnnotation)
void	FilterPaths.setFilters(PathQueryExpression filters)
void	ListFiles.setFilters(PathQueryExpression filters)
void	ListSubfolders.setFilters(PathQueryExpression filters)
void	SimplePathAnnotationGenerator.setFullPath(boolean fullPath)
void	SimpleFolderAnnotationGenerator.setGeneratedAnnotation(String generatedAnnotation) Sets the generated annotation type
void	SimplePathAnnotationGenerator.setGeneratedAnnotation(String generatedAnnotation)
void	SimpleFileAnnotationGenerator.setGeneratedAnnotation(String generatedAnnotation) Sets generated annotation type
void	ImportDataTableDirectory.setIgnoreImportedDataAnnotations(boolean ignoreImportedDataAnnotations)
void	ImportDataTableArchive.setIgnoreImportedDataAnnotations(boolean ignoreImportedDataAnnotations)
void	ImportDataTableDirectory.setIgnoreImportedTextAnnotations(boolean ignoreImportedTextAnnotations)
void	ImportDataTableArchive.setIgnoreImportedTextAnnotations(boolean ignoreImportedTextAnnotations)
void	ImportDataTableDirectory.setIgnoreInputDataAnnotations(boolean ignoreInputDataAnnotations)
void	ImportDataTableArchive.setIgnoreInputDataAnnotations(boolean ignoreInputDataAnnotations)
void	ImportDataTableDirectory.setIgnoreInputTextAnnotations(boolean ignoreInputTextAnnotations)
void	ImportDataTableArchive.setIgnoreInputTextAnnotations(boolean ignoreInputTextAnnotations)
void	ImportDataTableArchive.setInternalPath(String internalPath)
void	AnnotateWithPathProperties.setLastModifiedTime(OptionalAnnotationNameParameter lastModifiedTime)
void	ExtractParent.setOrder(int order)
void	ExportDataByParameter.setOutputDirectory(Path outputDirectory)
void	ExportDataTableByParameter.setOutputDirectory(Path outputDirectory)
void	FilterPaths.setOutputFiles(boolean outputFiles)
void	FilterPaths.setOutputFolders(boolean outputFolders)
void	FilterPaths.setOutputNonExisting(boolean outputNonExisting)
void	RelativizeByParameter.setParentPath(Path parentPath) Sets the subfolder
void	AnnotateWithPathProperties.setParentPathAnnotation(OptionalAnnotationNameParameter parentPathAnnotation)
void	RenameByString.setPathName(String pathName) Sets the subfolder
void	ListFiles.setRecursive(boolean recursive)
void	ListSubfolders.setRecursive(boolean recursive)
void	ListFiles.setRecursiveFollowsLinks(boolean recursiveFollowsLinks)
void	ListSubfolders.setRecursiveFollowsLinks(boolean recursiveFollowsLinks)
void	ExportDataByParameter.setRelativeToProjectDir(boolean relativeToProjectDir)
void	ExportDataTableByParameter.setRelativeToProjectDir(boolean relativeToProjectDir)
void	SimplePathAnnotationGenerator.setRemoveExtensions(boolean removeExtensions)
void	AnnotateWithPathProperties.setSizeAnnotation(OptionalAnnotationNameParameter sizeAnnotation)
void	CopyPath.setSkipExisting(boolean skipExisting)
void	CopyPath.setSkipInvalid(boolean skipInvalid)
void	ExportData.setSplitBySlotName(boolean splitBySlotName)
void	ExportDataByParameter.setSplitBySlotName(boolean splitBySlotName)
void	ListFiles.setSubFolder(String subFolder)
void	ListSubfolders.setSubFolder(String subFolder)
void	ConcatenateByParameter.setSubPath(Path subPath) Sets the subfolder
void	ImportDataTableDirectory.setTextAnnotationMergeMode(JIPipeTextAnnotationMergeMode textAnnotationMergeMode)
void	ImportDataTableArchive.setTextAnnotationMergeMode(JIPipeTextAnnotationMergeMode textAnnotationMergeMode)
void	AnnotateWithPathProperties.setTypeAnnotation(OptionalAnnotationNameParameter typeAnnotation)
void	CreateDirectory.setWithParents(boolean withParents) Sets the subfolder

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.filesystem.datasources

Methods in org.hkijena.jipipe.extensions.filesystem.datasources with annotations of type JIPipeParameter

Modifier and Type	Method and Description
String	TemporaryFolderDataSource.getBaseName()
Path	FileDataSource.getFileName()
PathList	FileListDataSource.getFiles()
Path	FolderDataSource.getFolderPath()
PathList	FolderListDataSource.getFolderPaths()
Path	PathDataSource.getPath()
PathIOMode	PathFromUserDataSource.getPathIOMode()
PathList	PathListDataSource.getPaths()
PathType	PathFromUserDataSource.getPathType()
String	TemporaryFileDataSource.getPrefix()
String	TemporaryFileDataSource.getSuffix()
StringList	DownloadFilesDataSource.getUrls()
boolean	PathFromUserDataSource.isMultiple()
boolean	PathDataSource.isNeedsToExist()
boolean	FolderDataSource.isNeedsToExist()
boolean	FileDataSource.isNeedsToExist()
boolean	TemporaryFolderDataSource.isUseScratchDirectory()
void	TemporaryFolderDataSource.setBaseName(String baseName)
void	FileDataSource.setFileName(Path fileName) Sets the file name
void	FileListDataSource.setFiles(PathList files) Sets the file names
void	FolderDataSource.setFolderPath(Path folderPath) Sets the folder path
void	FolderListDataSource.setFolderPaths(PathList folderPaths) Sets the folder path
void	PathFromUserDataSource.setMultiple(boolean multiple)
void	PathDataSource.setNeedsToExist(boolean needsToExist)
void	FolderDataSource.setNeedsToExist(boolean needsToExist)
void	FileDataSource.setNeedsToExist(boolean needsToExist)
void	PathDataSource.setPath(Path path) Sets the file name
void	PathFromUserDataSource.setPathIOMode(PathIOMode pathIOMode)
void	PathListDataSource.setPaths(PathList paths) Sets the folder path
void	PathFromUserDataSource.setPathType(PathType pathType)
void	TemporaryFileDataSource.setPrefix(String prefix)
void	TemporaryFileDataSource.setSuffix(String suffix)
void	DownloadFilesDataSource.setUrls(StringList urls)
void	TemporaryFolderDataSource.setUseScratchDirectory(boolean useScratchDirectory)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.forms.algorithms

Methods in org.hkijena.jipipe.extensions.forms.algorithms with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeMergingAlgorithmDataBatchGenerationSettings	MergingFormProcessorAlgorithm.getDataBatchGenerationSettings()
JIPipeSimpleIteratingAlgorithmDataBatchGenerationSettings	SimpleIteratingFormProcessorAlgorithm.getDataBatchGenerationSettings()
JIPipeMergingAlgorithmDataBatchGenerationSettings	IteratingFormProcessorAlgorithm.getDataBatchGenerationSettings()
FormData	SimpleFormGeneratorAlgorithm.getFormData()
String	MergingFormProcessorAlgorithm.getTabAnnotation()
String	SimpleIteratingFormProcessorAlgorithm.getTabAnnotation()
String	IteratingFormProcessorAlgorithm.getTabAnnotation()
boolean	IteratingFormProcessorAlgorithm.isRestoreAnnotations()
void	IteratingFormProcessorAlgorithm.setRestoreAnnotations(boolean restoreAnnotations)
void	MergingFormProcessorAlgorithm.setTabAnnotation(String tabAnnotation)
void	SimpleIteratingFormProcessorAlgorithm.setTabAnnotation(String tabAnnotation)
void	IteratingFormProcessorAlgorithm.setTabAnnotation(String tabAnnotation)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.forms.datatypes

Methods in org.hkijena.jipipe.extensions.forms.datatypes with annotations of type JIPipeParameter

Modifier and Type	Method and Description
SingleAnnotationIOSettings	IntegerFormData.getAnnotationIOSettings()
SingleAnnotationIOSettings	DoubleFormData.getAnnotationIOSettings()
SingleAnnotationIOSettings	EnumFormData.getAnnotationIOSettings()
SingleAnnotationIOSettings	BooleanFormData.getAnnotationIOSettings()
SingleAnnotationIOSettings	StringFormData.getAnnotationIOSettings()
SingleAnnotationIOSettings	PathFormData.getAnnotationIOSettings()
HTMLText	ParameterFormData.getDescription()
StringList	PathFormData.getExtensions()
OptionalStringParameter	BooleanFormData.getFalseString()
PathIOMode	PathFormData.getIoMode()
StringAndStringPairParameter.List	EnumFormData.getItems()
String	ParameterFormData.getName()
PathType	PathFormData.getPathType()
String	FormData.TabSettings.getTab()
OptionalAnnotationNameParameter	FormData.TabSettings.getTabAnnotation()
FormData.TabSettings	FormData.getTabSettings()
OptionalStringParameter	BooleanFormData.getTrueString()
DefaultExpressionParameter	IntegerFormData.getValidationExpression()
DefaultExpressionParameter	DoubleFormData.getValidationExpression()
StringQueryExpression	StringFormData.getValidationExpression()
StringQueryExpression	PathFormData.getValidationExpression()
int	IntegerFormData.getValue()
double	DoubleFormData.getValue()
String	EnumFormData.getValue()
boolean	BooleanFormData.getValue()
String	StringFormData.getValue()
Path	PathFormData.getValue()
boolean	ParameterFormData.isShowName()
void	ParameterFormData.setDescription(HTMLText description)
void	PathFormData.setExtensions(StringList extensions)
void	BooleanFormData.setFalseString(OptionalStringParameter falseString)
void	PathFormData.setIoMode(PathIOMode ioMode)
void	EnumFormData.setItems(StringAndStringPairParameter.List items)
void	ParameterFormData.setName(String name)
void	PathFormData.setPathType(PathType pathType)
void	ParameterFormData.setShowName(boolean showName)
void	FormData.TabSettings.setTab(String tab)
void	FormData.TabSettings.setTabAnnotation(OptionalAnnotationNameParameter tabAnnotation)
void	BooleanFormData.setTrueString(OptionalStringParameter trueString)
void	IntegerFormData.setValidationExpression(DefaultExpressionParameter validationExpression)
void	DoubleFormData.setValidationExpression(DefaultExpressionParameter validationExpression)
void	StringFormData.setValidationExpression(StringQueryExpression validationExpression)
void	PathFormData.setValidationExpression(StringQueryExpression validationExpression)
void	BooleanFormData.setValue(boolean value)
void	DoubleFormData.setValue(double value)
void	IntegerFormData.setValue(int value)
void	PathFormData.setValue(Path value)
void	EnumFormData.setValue(String value)
void	StringFormData.setValue(String value)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.forms.utils

Methods in org.hkijena.jipipe.extensions.forms.utils with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeTextAnnotationMergeMode	SingleAnnotationIOSettings.getAnnotationMergeStrategy()
OptionalAnnotationNameParameter	SingleAnnotationIOSettings.getInputAnnotation()
OptionalAnnotationNameParameter	SingleAnnotationIOSettings.getOutputAnnotation()
void	SingleAnnotationIOSettings.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	SingleAnnotationIOSettings.setInputAnnotation(OptionalAnnotationNameParameter inputAnnotation)
void	SingleAnnotationIOSettings.setOutputAnnotation(OptionalAnnotationNameParameter outputAnnotation)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.ijmultitemplatematching

Methods in org.hkijena.jipipe.extensions.ijmultitemplatematching with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalColorParameter	MultiTemplateMatchingAlgorithm.getAssembleTemplatesBackground()
OptionalDataInfoRefParameter	MultiTemplateMatchingAlgorithm.getAssembleTemplatesOutput()
int	MultiTemplateMatchingAlgorithm.getExpectedNumberOfObjects()
double	MultiTemplateMatchingAlgorithm.getMultiObjectMaximumBoundingBoxOverlap()
double	MultiTemplateMatchingAlgorithm.getMultiObjectScoreThreshold()
IntegerRange	MultiTemplateMatchingAlgorithm.getRotateTemplate()
TemplateMatchingMethod	MultiTemplateMatchingAlgorithm.getTemplateMatchingMethod()
boolean	MultiTemplateMatchingAlgorithm.isAssembleTemplates()
boolean	MultiTemplateMatchingAlgorithm.isFlipTemplateHorizontally()
boolean	MultiTemplateMatchingAlgorithm.isFlipTemplateVertically()
boolean	MultiTemplateMatchingAlgorithm.isRestrictToROI()
boolean	MultiTemplateMatchingAlgorithm.isWithNonMaximaSuppression()
void	MultiTemplateMatchingAlgorithm.setAssembleTemplates(boolean assembleTemplates)
void	MultiTemplateMatchingAlgorithm.setAssembleTemplatesBackground(OptionalColorParameter assembleTemplatesBackground)
void	MultiTemplateMatchingAlgorithm.setAssembleTemplatesOutput(OptionalDataInfoRefParameter assembleTemplatesOutput)
boolean	MultiTemplateMatchingAlgorithm.setExpectedNumberOfObjects(int expectedNumberOfObjects)
void	MultiTemplateMatchingAlgorithm.setFlipTemplateHorizontally(boolean flipTemplateHorizontally)
void	MultiTemplateMatchingAlgorithm.setFlipTemplateVertically(boolean flipTemplateVertically)
boolean	MultiTemplateMatchingAlgorithm.setMultiObjectMaximumBoundingBoxOverlap(double multiObjectMaximumBoundingBoxOverlap)
boolean	MultiTemplateMatchingAlgorithm.setMultiObjectScoreThreshold(double multiObjectScoreThreshold)
void	MultiTemplateMatchingAlgorithm.setRestrictToROI(boolean restrictToROI)
void	MultiTemplateMatchingAlgorithm.setRotateTemplate(IntegerRange rotateTemplate)
void	MultiTemplateMatchingAlgorithm.setTemplateMatchingMethod(TemplateMatchingMethod templateMatchingMethod)
void	MultiTemplateMatchingAlgorithm.setWithNonMaximaSuppression(boolean withNonMaximaSuppression)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.ijtrackmate.nodes.converters

Methods in org.hkijena.jipipe.extensions.ijtrackmate.nodes.converters with annotations of type JIPipeParameter

Modifier and Type	Method and Description
NamedTextAnnotationGeneratorExpression.List	ConvertTracksToRoiNode.getAnnotationGenerator()
OptionalDefaultExpressionParameter	ConvertSpotsToRoiNode.getFillColor()
OptionalDefaultExpressionParameter	ConvertTracksToRoiNode.getFillColor()
OptionalDefaultExpressionParameter	ConvertSpotsToRoiNode.getLineColor()
OptionalDefaultExpressionParameter	ConvertTracksToRoiNode.getLineColor()
OptionalDefaultExpressionParameter	ConvertSpotsToRoiNode.getLineWidth()
OptionalDefaultExpressionParameter	ConvertTracksToRoiNode.getLineWidth()
OptionalDefaultExpressionParameter	ConvertSpotsToRoiNode.getRoiName()
OptionalDefaultExpressionParameter	ConvertTracksToRoiNode.getRoiName()
void	ConvertTracksToRoiNode.setAnnotationGenerator(NamedTextAnnotationGeneratorExpression.List annotationGenerator)
void	ConvertSpotsToRoiNode.setFillColor(OptionalDefaultExpressionParameter fillColor)
void	ConvertTracksToRoiNode.setFillColor(OptionalDefaultExpressionParameter fillColor)
void	ConvertSpotsToRoiNode.setLineColor(OptionalDefaultExpressionParameter lineColor)
void	ConvertTracksToRoiNode.setLineColor(OptionalDefaultExpressionParameter lineColor)
void	ConvertSpotsToRoiNode.setLineWidth(OptionalDefaultExpressionParameter lineWidth)
void	ConvertTracksToRoiNode.setLineWidth(OptionalDefaultExpressionParameter lineWidth)
void	ConvertSpotsToRoiNode.setRoiName(OptionalDefaultExpressionParameter roiName)
void	ConvertTracksToRoiNode.setRoiName(OptionalDefaultExpressionParameter roiName)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.ijtrackmate.nodes.detectors

Methods in org.hkijena.jipipe.extensions.ijtrackmate.nodes.detectors with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeDynamicParameterCollection	CreateSpotDetectorNode.getParameters()
JIPipeDynamicParameterCollection	CreateSpotTrackerNode.getParameters()

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.ijtrackmate.nodes.spots

Methods in org.hkijena.jipipe.extensions.ijtrackmate.nodes.spots with annotations of type JIPipeParameter

Modifier and Type	Method and Description
NamedTextAnnotationGeneratorExpression.List	SplitSpotsNode.getAnnotationGenerator()
CustomExpressionVariablesParameter	SpotFilterNode.getCustomVariables()
CustomExpressionVariablesParameter	SplitSpotsNode.getCustomVariables()
DefaultExpressionParameter	SpotFilterNode.getFilter()
double	SpotsToRGBNode.getMagnification()
SpotDrawer	SpotsToRGBNode.getSpotDrawer()
void	SplitSpotsNode.setAnnotationGenerator(NamedTextAnnotationGeneratorExpression.List annotationGenerator)
void	SpotFilterNode.setFilter(DefaultExpressionParameter filter)
void	SpotsToRGBNode.setMagnification(double magnification)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.ijtrackmate.nodes.tracks

Methods in org.hkijena.jipipe.extensions.ijtrackmate.nodes.tracks with annotations of type JIPipeParameter

Modifier and Type	Method and Description
NamedTextAnnotationGeneratorExpression.List	SplitTracksNode.getAnnotationGenerator()
CustomExpressionVariablesParameter	TrackFilterNode.getCustomVariables()
DefaultExpressionParameter	TrackFilterNode.getFilter()
double	TracksToRGBNode.getMagnification()
int	FollowSpotsPerTrackNode.getMinHeight()
int	FollowSpotsPerTrackNode.getMinWidth()
TrackDrawer	TracksToRGBNode.getTrackDrawer()
OptionalAnnotationNameParameter	FollowSpotsPerTrackNode.getTrackIDAnnotation()
boolean	FollowSpotsPerTrackNode.isCropT()
boolean	FollowSpotsPerTrackNode.isCropXY()
boolean	FollowSpotsPerTrackNode.isCropZ()
void	SplitTracksNode.setAnnotationGenerator(NamedTextAnnotationGeneratorExpression.List annotationGenerator)
void	FollowSpotsPerTrackNode.setCropT(boolean cropT)
void	FollowSpotsPerTrackNode.setCropXY(boolean cropXY)
void	FollowSpotsPerTrackNode.setCropZ(boolean cropZ)
void	TrackFilterNode.setFilter(DefaultExpressionParameter filter)
void	TracksToRGBNode.setMagnification(double magnification)
void	FollowSpotsPerTrackNode.setMinHeight(int minHeight)
void	FollowSpotsPerTrackNode.setMinWidth(int minWidth)
void	FollowSpotsPerTrackNode.setTrackIDAnnotation(OptionalAnnotationNameParameter trackIDAnnotation)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.ijtrackmate.parameters

Methods in org.hkijena.jipipe.extensions.ijtrackmate.parameters with annotations of type JIPipeParameter

Modifier and Type	Method and Description
SpotFeature	SpotFeatureFilterParameter.getFeature()
TrackFeature	TrackFeatureFilterParameter.getFeature()
SpotFeature	SpotFeaturePenaltyParameter.getFeature()
double	SpotFeaturePenaltyParameter.getPenalty()
double	SpotFeatureFilterParameter.getValue()
double	TrackFeatureFilterParameter.getValue()
boolean	SpotFeatureFilterParameter.isAbove()
boolean	TrackFeatureFilterParameter.isAbove()
void	SpotFeatureFilterParameter.setAbove(boolean above)
void	TrackFeatureFilterParameter.setAbove(boolean above)
void	SpotFeatureFilterParameter.setFeature(SpotFeature feature)
void	SpotFeaturePenaltyParameter.setFeature(SpotFeature feature)
void	TrackFeatureFilterParameter.setFeature(TrackFeature feature)
void	SpotFeaturePenaltyParameter.setPenalty(double penalty)
void	SpotFeatureFilterParameter.setValue(double value)
void	TrackFeatureFilterParameter.setValue(double value)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.ijtrackmate.settings

Methods in org.hkijena.jipipe.extensions.ijtrackmate.settings with annotations of type JIPipeParameter

Modifier and Type	Method and Description
SpotDrawer	ImageViewerUISpotsDisplaySettings.getSpotDrawer()
TrackDrawer	ImageViewerUITracksDisplaySettings.getTrackDrawer()
boolean	ImageViewerUISpotsDisplaySettings.isShowSpots()
boolean	ImageViewerUITracksDisplaySettings.isShowTracks()
void	ImageViewerUISpotsDisplaySettings.setShowSpots(boolean showSpots)
void	ImageViewerUITracksDisplaySettings.setShowTracks(boolean showTracks)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.ijtrackmate.utils

Methods in org.hkijena.jipipe.extensions.ijtrackmate.utils with annotations of type JIPipeParameter

Modifier and Type	Method and Description
SpotFeature	SpotDrawer.LabelSettings.getDrawnFeature()
int	TrackDrawer.getFadeTrackRange()
OptionalColorParameter	DrawerLabelSettings.getLabelBackground()
Color	DrawerLabelSettings.getLabelForeground()
SpotDrawer.LabelSettings	SpotDrawer.getLabelSettings()
int	DrawerLabelSettings.getLabelSize()
Color	TrackDrawer.getStrokeColor()
Color	SpotDrawer.getStrokeColor()
EdgeFeature	TrackDrawer.getStrokeColorEdgeFeature()
SpotFeature	SpotDrawer.getStrokeColorFeature()
TrackDrawer.StrokeColorMode	TrackDrawer.getStrokeColorMode()
TrackFeature	TrackDrawer.getStrokeColorTrackFeature()
int	TrackDrawer.getStrokeWidth()
int	SpotDrawer.getStrokeWidth()
DisplaySettings.TrackDisplayMode	TrackDrawer.getTrackDisplayMode()
boolean	DrawerLabelSettings.isDrawLabels()
boolean	SpotDrawer.LabelSettings.isDrawName()
boolean	SpotDrawer.isFillSpots()
boolean	SpotDrawer.isUniformStrokeColor()
void	DrawerLabelSettings.setDrawLabels(boolean drawLabels)
void	SpotDrawer.LabelSettings.setDrawName(boolean drawName)
void	SpotDrawer.LabelSettings.setDrawnFeature(SpotFeature drawnFeature)
void	TrackDrawer.setFadeTrackRange(int fadeTrackRange)
void	SpotDrawer.setFillSpots(boolean fillSpots)
void	DrawerLabelSettings.setLabelBackground(OptionalColorParameter labelBackground)
void	DrawerLabelSettings.setLabelForeground(Color labelForeground)
boolean	DrawerLabelSettings.setLabelSize(int labelSize)
void	TrackDrawer.setStrokeColor(Color strokeColor)
void	SpotDrawer.setStrokeColor(Color strokeColor)
void	TrackDrawer.setStrokeColorEdgeFeature(EdgeFeature strokeColorEdgeFeature)
void	SpotDrawer.setStrokeColorFeature(SpotFeature strokeColorFeature)
void	TrackDrawer.setStrokeColorMode(TrackDrawer.StrokeColorMode strokeColorMode)
void	TrackDrawer.setStrokeColorTrackFeature(TrackFeature strokeColorTrackFeature)
void	TrackDrawer.setStrokeWidth(int strokeWidth)
void	SpotDrawer.setStrokeWidth(int strokeWidth)
void	TrackDrawer.setTrackDisplayMode(DisplaySettings.TrackDisplayMode trackDisplayMode)
void	SpotDrawer.setUniformStrokeColor(boolean uniformStrokeColor)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.ijweka.nodes

Methods in org.hkijena.jipipe.extensions.ijweka.nodes with annotations of type JIPipeParameter

Modifier and Type	Method and Description
InputSlotMapParameterCollection	WekaTrainingROI3DAlgorithm.getClassAssignment()
InputSlotMapParameterCollection	WekaTrainingROI2DAlgorithm.getClassAssignment()
WekaClassifierSettings	WekaTrainingROI3DAlgorithm.getClassifierSettings()
WekaClassifierSettings	WekaTrainingROI2DAlgorithm.getClassifierSettings()
WekaClassifierSettings	WekaTrainingLabels2DAlgorithm.getClassifierSettings()
WekaClassifierSettings	WekaTrainingMask2DAlgorithm.getClassifierSettings()
WekaFeature3DSettings	WekaTrainingROI3DAlgorithm.getFeatureSettings()
WekaFeature2DSettings	WekaTrainingROI2DAlgorithm.getFeatureSettings()
WekaFeature2DSettings	WekaTrainingLabels2DAlgorithm.getFeatureSettings()
WekaFeature2DSettings	WekaTrainingMask2DAlgorithm.getFeatureSettings()
OptionalIntegerParameter	WekaClassification2DAlgorithm.getNumThreads()
OptionalIntegerParameter	WekaClassification3DAlgorithm.getNumThreads()
WekaTiling3DSettings	WekaClassification3DAlgorithm.getTilingParameters()
WekaTiling2DSettings	WekaClassification2DAlgorithm.getTilingSettings()
boolean	WekaClassification2DAlgorithm.isOutputProbabilityMaps()
boolean	WekaClassification3DAlgorithm.isOutputProbabilityMaps()
boolean	ImportWekaModelFromFileAlgorithm.isProcessing3D()
void	WekaClassification2DAlgorithm.setNumThreads(OptionalIntegerParameter numThreads)
void	WekaClassification3DAlgorithm.setNumThreads(OptionalIntegerParameter numThreads)
void	WekaClassification2DAlgorithm.setOutputProbabilityMaps(boolean outputProbabilityMaps)
void	WekaClassification3DAlgorithm.setOutputProbabilityMaps(boolean outputProbabilityMaps)
void	ImportWekaModelFromFileAlgorithm.setProcessing3D(boolean processing3D)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.ijweka.parameters

Methods in org.hkijena.jipipe.extensions.ijweka.parameters with annotations of type JIPipeParameter

Modifier and Type	Method and Description
WekaClassifierParameter	WekaClassifierSettings.getClassifier()
boolean	WekaClassifierSettings.isBalanceClasses()
void	WekaClassifierSettings.setBalanceClasses(boolean balanceClasses)
void	WekaClassifierSettings.setClassifier(WekaClassifierParameter classifier)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.ijweka.parameters.collections

Methods in org.hkijena.jipipe.extensions.ijweka.parameters.collections with annotations of type JIPipeParameter

Modifier and Type	Method and Description
BorderMode	WekaTiling2DSettings.getBorderMode()
float	WekaFeature2DSettings.getMaxSigma()
float	WekaFeature3DSettings.getMaxSigma()
int	WekaFeature2DSettings.getMembranePatchSize()
int	WekaFeature3DSettings.getMembranePatchSize()
int	WekaFeature2DSettings.getMembraneSize()
int	WekaFeature3DSettings.getMembraneSize()
float	WekaFeature2DSettings.getMinSigma()
float	WekaFeature3DSettings.getMinSigma()
int	WekaTiling2DSettings.getOverlapX()
int	WekaTiling2DSettings.getOverlapY()
int	WekaTiling2DSettings.getTileSizeX()
int	WekaTiling3DSettings.getTileSizeX()
int	WekaTiling2DSettings.getTileSizeY()
int	WekaTiling3DSettings.getTileSizeY()
int	WekaTiling3DSettings.getTileSizeZ()
WekaFeatureSet2D	WekaFeature2DSettings.getTrainingFeatures()
WekaFeatureSet3D	WekaFeature3DSettings.getTrainingFeatures()
boolean	WekaTiling2DSettings.isApplyTiling()
boolean	WekaTiling3DSettings.isApplyTiling()
boolean	WekaFeature2DSettings.isUseNeighbors()
boolean	WekaFeature3DSettings.isUseNeighbors()
boolean	WekaTiling2DSettings.isUseWekaNativeTiling()
void	WekaTiling2DSettings.setApplyTiling(boolean applyTiling)
void	WekaTiling3DSettings.setApplyTiling(boolean applyTiling)
void	WekaTiling2DSettings.setBorderMode(BorderMode borderMode)
void	WekaFeature2DSettings.setMaxSigma(float maxSigma)
void	WekaFeature3DSettings.setMaxSigma(float maxSigma)
void	WekaFeature2DSettings.setMembranePatchSize(int membranePatchSize)
void	WekaFeature3DSettings.setMembranePatchSize(int membranePatchSize)
void	WekaFeature2DSettings.setMembraneSize(int membraneSize)
void	WekaFeature3DSettings.setMembraneSize(int membraneSize)
void	WekaFeature2DSettings.setMinSigma(float minSigma)
void	WekaFeature3DSettings.setMinSigma(float minSigma)
boolean	WekaTiling2DSettings.setOverlapX(int overlapX)
boolean	WekaTiling2DSettings.setOverlapY(int overlapY)
void	WekaTiling2DSettings.setTileSizeX(int tileSizeX)
void	WekaTiling3DSettings.setTileSizeX(int tileSizeX)
void	WekaTiling2DSettings.setTileSizeY(int tileSizeY)
void	WekaTiling3DSettings.setTileSizeY(int tileSizeY)
void	WekaTiling3DSettings.setTileSizeZ(int tileSizeZ)
void	WekaFeature2DSettings.setTrainingFeatures(WekaFeatureSet2D trainingFeatures)
void	WekaFeature3DSettings.setTrainingFeatures(WekaFeatureSet3D trainingFeatures)
void	WekaFeature2DSettings.setUseNeighbors(boolean useNeighbors)
void	WekaFeature3DSettings.setUseNeighbors(boolean useNeighbors)
void	WekaTiling2DSettings.setUseWekaNativeTiling(boolean useWekaNativeTiling)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagej2

Methods in org.hkijena.jipipe.extensions.imagej2 with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeDynamicParameterCollection	ImageJ2OpNode.getModuleParameters()

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagej2.algorithms

Methods in org.hkijena.jipipe.extensions.imagej2.algorithms with annotations of type JIPipeParameter

Modifier and Type	Method and Description
ImageJ2OutOfBoundsFactoryData	CreateIJ2OutOfBoundsFactoryAlgorithm.getFactoryData()
JIPipeDataInfoRef	CreateIJ2OutOfBoundsFactoryAlgorithm.getFactoryType()
ImageJ2ShapeData	CreateIJ2ShapeAlgorithm.getShapeData()
JIPipeDataInfoRef	CreateIJ2ShapeAlgorithm.getShapeType()
void	CreateIJ2OutOfBoundsFactoryAlgorithm.setFactoryType(JIPipeDataInfoRef factoryType)
void	CreateIJ2ShapeAlgorithm.setShapeType(JIPipeDataInfoRef shapeType)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds

Methods in org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OutOfBoundsMirrorFactory.Boundary	MirrorImageJ2OutOfBoundsFactoryData.getBoundary()
void	MirrorImageJ2OutOfBoundsFactoryData.setBoundary(OutOfBoundsMirrorFactory.Boundary boundary)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds.constant

Methods in org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds.constant with annotations of type JIPipeParameter

Modifier and Type	Method and Description
byte	ByteConstantValueImageJ2OutOfBoundsFactoryData.getValue()
int	IntegerConstantValueImageJ2OutOfBoundsFactoryData.getValue()
float	FloatConstantValueImageJ2OutOfBoundsFactoryData.getValue()
long	LongConstantValueImageJ2OutOfBoundsFactoryData.getValue()
double	DoubleConstantValueImageJ2OutOfBoundsFactoryData.getValue()
short	ShortConstantValueImageJ2OutOfBoundsFactoryData.getValue()
void	ByteConstantValueImageJ2OutOfBoundsFactoryData.setValue(byte value)
void	DoubleConstantValueImageJ2OutOfBoundsFactoryData.setValue(double value)
void	FloatConstantValueImageJ2OutOfBoundsFactoryData.setValue(float value)
void	IntegerConstantValueImageJ2OutOfBoundsFactoryData.setValue(int value)
void	LongConstantValueImageJ2OutOfBoundsFactoryData.setValue(long value)
void	ShortConstantValueImageJ2OutOfBoundsFactoryData.setValue(short value)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagej2.datatypes.shapes

Methods in org.hkijena.jipipe.extensions.imagej2.datatypes.shapes with annotations of type JIPipeParameter

Modifier and Type	Method and Description
IntegerList	PeriodicLineImageJ2ShapeData.getIncrements()
int	HorizontalLineImageJ2ShapeData.getLineDimension()
LongList	PairOfPointsImageJ2ShapeData.getOffset()
long	DiamondImageJ2ShapeData.getRadius()
long	DiamondTipsImageJ2ShapeData.getRadius()
long	HyperSphereImageJ2ShapeData.getRadius()
IntegerList	CenteredRectangleImageJ2ShapeData.getSpan()
int	RectangleImageJ2ShapeData.getSpan()
long	HorizontalLineImageJ2ShapeData.getSpan()
long	PeriodicLineImageJ2ShapeData.getSpan()
boolean	CenteredRectangleImageJ2ShapeData.isSkipCenter()
boolean	RectangleImageJ2ShapeData.isSkipCenter()
boolean	HorizontalLineImageJ2ShapeData.isSkipCenter()
void	PeriodicLineImageJ2ShapeData.setIncrements(IntegerList increments)
void	HorizontalLineImageJ2ShapeData.setLineDimension(int lineDimension)
void	PairOfPointsImageJ2ShapeData.setOffset(LongList offset)
void	DiamondImageJ2ShapeData.setRadius(long radius)
void	DiamondTipsImageJ2ShapeData.setRadius(long radius)
void	HyperSphereImageJ2ShapeData.setRadius(long radius)
void	CenteredRectangleImageJ2ShapeData.setSkipCenter(boolean skipCenter)
void	RectangleImageJ2ShapeData.setSkipCenter(boolean skipCenter)
void	HorizontalLineImageJ2ShapeData.setSkipCenter(boolean skipCenter)
void	RectangleImageJ2ShapeData.setSpan(int span)
void	CenteredRectangleImageJ2ShapeData.setSpan(IntegerList span)
void	HorizontalLineImageJ2ShapeData.setSpan(long span)
void	PeriodicLineImageJ2ShapeData.setSpan(long span)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1 with annotations of type JIPipeParameter

Modifier and Type	Method and Description
ImageJMacro	MacroWrapperAlgorithm.getCode()
int	MacroWrapperAlgorithm.getExportDelay()
int	MacroWrapperAlgorithm.getImportDelay()
InputSlotMapParameterCollection	MacroWrapperAlgorithm.getInputToImageJExporters()
JIPipeDynamicParameterCollection	MacroWrapperAlgorithm.getMacroParameters()
OutputSlotMapParameterCollection	MacroWrapperAlgorithm.getOutputFromImageJImporters()
void	MacroWrapperAlgorithm.setCode(ImageJMacro code)
void	MacroWrapperAlgorithm.setExportDelay(int exportDelay)
void	MacroWrapperAlgorithm.setImportDelay(int importDelay)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze with annotations of type JIPipeParameter

Modifier and Type	Method and Description
ExpressionTableColumnGeneratorProcessorParameterList	AnnotateByImageStatisticsExpressionAlgorithm.getAnnotations()
OptionalStringParameter	FindParticles2D.getAnnotationType()
ExpressionTableColumnGeneratorProcessorParameterList	ImageStatisticsExpressionAlgorithm.getColumns()
OptionalStringParameter	ImageStatisticsAlgorithm.getIndexAnnotation()
double	FindParticles2D.getMaxParticleCircularity()
double	FindParticles2D.getMaxParticleSize()
ImageStatisticsSetParameter	ImageStatisticsAlgorithm.getMeasurements()
double	FindParticles2D.getMinParticleCircularity()
double	FindParticles2D.getMinParticleSize()
Neighborhood2D	FindParticles2D.getNeighborhood()
AnalyzeSkeleton2D3DAlgorithm.OutputParameters	AnalyzeSkeleton2D3DAlgorithm.getOutputParameters()
AnalyzeSkeleton2D3DAlgorithm.CycleRemovalMethod	AnalyzeSkeleton2D3DAlgorithm.getPruneCyclesMethod()
AnalyzeSkeleton2D3DAlgorithm.EndRemovalMethod	AnalyzeSkeleton2D3DAlgorithm.getPruneEndsMethod()
ImageStatisticsSetParameter	FindParticles2D.getStatisticsParameters()
ImageROITargetArea	AnnotateByImageStatisticsExpressionAlgorithm.getTargetArea()
ImageROITargetArea	ImageStatisticsExpressionAlgorithm.getTargetArea()
boolean	ImageStatisticsExpressionAlgorithm.isApplyPerChannel()
boolean	ImageStatisticsAlgorithm.isApplyPerChannel()
boolean	ImageStatisticsExpressionAlgorithm.isApplyPerFrame()
boolean	ImageStatisticsAlgorithm.isApplyPerFrame()
boolean	ImageStatisticsExpressionAlgorithm.isApplyPerSlice()
boolean	ImageStatisticsAlgorithm.isApplyPerSlice()
boolean	FindParticles2D.isBlackBackground()
boolean	FindParticles2D.isExcludeEdges()
boolean	FindParticles2D.isIncludeHoles()
boolean	ImageStatisticsAlgorithm.isMeasureInPhysicalUnits()
boolean	FindParticles2D.isMeasureInPhysicalUnits()
boolean	AnalyzeSkeleton2D3DAlgorithm.OutputParameters.isOutputBranchTable()
boolean	AnalyzeSkeleton2D3DAlgorithm.OutputParameters.isOutputLargestShortestPaths()
boolean	AnalyzeSkeleton2D3DAlgorithm.OutputParameters.isOutputSkeletonLabels()
boolean	AnalyzeSkeleton2D3DAlgorithm.OutputParameters.isOutputSkeletonTable()
boolean	AnalyzeSkeleton2D3DAlgorithm.OutputParameters.isOutputTaggedSkeletons()
boolean	FindParticles2D.isSplitSlices()
void	AnnotateByImageStatisticsExpressionAlgorithm.setAnnotations(ExpressionTableColumnGeneratorProcessorParameterList annotations)
void	FindParticles2D.setAnnotationType(OptionalStringParameter annotationType)
void	ImageStatisticsExpressionAlgorithm.setApplyPerChannel(boolean applyPerChannel)
void	ImageStatisticsAlgorithm.setApplyPerChannel(boolean applyPerChannel)
void	ImageStatisticsExpressionAlgorithm.setApplyPerFrame(boolean applyPerFrame)
void	ImageStatisticsAlgorithm.setApplyPerFrame(boolean applyPerFrame)
void	ImageStatisticsExpressionAlgorithm.setApplyPerSlice(boolean applyPerSlice)
void	ImageStatisticsAlgorithm.setApplyPerSlice(boolean applyPerSlice)
void	FindParticles2D.setBlackBackground(boolean blackBackground)
void	ImageStatisticsExpressionAlgorithm.setColumns(ExpressionTableColumnGeneratorProcessorParameterList columns)
void	FindParticles2D.setExcludeEdges(boolean excludeEdges)
void	FindParticles2D.setIncludeHoles(boolean includeHoles)
void	ImageStatisticsAlgorithm.setIndexAnnotation(OptionalStringParameter indexAnnotation)
boolean	FindParticles2D.setMaxParticleCircularity(double maxParticleCircularity)
void	FindParticles2D.setMaxParticleSize(double maxParticleSize)
void	ImageStatisticsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	FindParticles2D.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	ImageStatisticsAlgorithm.setMeasurements(ImageStatisticsSetParameter measurements)
boolean	FindParticles2D.setMinParticleCircularity(double minParticleCircularity)
void	FindParticles2D.setMinParticleSize(double minParticleSize)
void	FindParticles2D.setNeighborhood(Neighborhood2D neighborhood)
void	AnalyzeSkeleton2D3DAlgorithm.OutputParameters.setOutputBranchTable(boolean outputBranchTable)
void	AnalyzeSkeleton2D3DAlgorithm.OutputParameters.setOutputLargestShortestPaths(boolean outputLargestShortestPaths)
void	AnalyzeSkeleton2D3DAlgorithm.OutputParameters.setOutputSkeletonLabels(boolean outputSkeletonLabels)
void	AnalyzeSkeleton2D3DAlgorithm.OutputParameters.setOutputSkeletonTable(boolean outputSkeletonTable)
void	AnalyzeSkeleton2D3DAlgorithm.OutputParameters.setOutputTaggedSkeletons(boolean outputTaggedSkeletons)
void	AnalyzeSkeleton2D3DAlgorithm.setPruneCyclesMethod(AnalyzeSkeleton2D3DAlgorithm.CycleRemovalMethod pruneCyclesMethod)
void	AnalyzeSkeleton2D3DAlgorithm.setPruneEndsMethod(AnalyzeSkeleton2D3DAlgorithm.EndRemovalMethod pruneEndsMethod)
void	FindParticles2D.setSplitSlices(boolean splitSlices)
void	FindParticles2D.setStatisticsParameters(ImageStatisticsSetParameter statisticsParameters)
void	AnnotateByImageStatisticsExpressionAlgorithm.setTargetArea(ImageROITargetArea targetArea)
void	ImageStatisticsExpressionAlgorithm.setTargetArea(ImageROITargetArea targetArea)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background with annotations of type JIPipeParameter

Modifier and Type	Method and Description
RollingBallBackgroundEstimator2DAlgorithm.BackgroundType	RollingBallBackgroundEstimator2DAlgorithm.getBackgroundType()
RollingBallBackgroundEstimator2DAlgorithm.Method	RollingBallBackgroundEstimator2DAlgorithm.getMethod()
double	RollingBallBackgroundEstimator2DAlgorithm.getRadius()
boolean	RollingBallBackgroundEstimator2DAlgorithm.isCorrectCorners()
boolean	RollingBallBackgroundEstimator2DAlgorithm.isPreSmoothing()
boolean	RollingBallBackgroundEstimator2DAlgorithm.isSeparateChannels()
boolean	RollingBallBackgroundEstimator2DAlgorithm.isSubtract()
void	RollingBallBackgroundEstimator2DAlgorithm.setBackgroundType(RollingBallBackgroundEstimator2DAlgorithm.BackgroundType backgroundType)
void	RollingBallBackgroundEstimator2DAlgorithm.setCorrectCorners(boolean correctCorners)
void	RollingBallBackgroundEstimator2DAlgorithm.setMethod(RollingBallBackgroundEstimator2DAlgorithm.Method method)
void	RollingBallBackgroundEstimator2DAlgorithm.setPreSmoothing(boolean preSmoothing)
boolean	RollingBallBackgroundEstimator2DAlgorithm.setRadius(double radius)
void	RollingBallBackgroundEstimator2DAlgorithm.setSeparateChannels(boolean separateChannels)
void	RollingBallBackgroundEstimator2DAlgorithm.setSubtract(boolean subtract)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary with annotations of type JIPipeParameter

Modifier and Type	Method and Description
DefaultExpressionParameter	ConditionalInverterAlgorithm.getCondition()
Neighborhood2D	ConnectedComponentsLabeling2DAlgorithm.getConnectivity()
Neighborhood2D	ConnectedComponentsLabeling3DAlgorithm.getConnectivity()
int	RemoveLargestRegionAlgorithm.getIterations()
LogicalOperation	BitwiseLogicalOperationAlgorithm.getLogicalOperation()
int	VolumeOpening3DAlgorithm.getMinPixels()
int	VolumeOpening2DAlgorithm.getMinPixels()
JIPipeDataInfoRef	ConnectedComponentsLabeling2DAlgorithm.getOutputType()
JIPipeDataInfoRef	ConnectedComponentsLabeling3DAlgorithm.getOutputType()
boolean	ConditionalInverterAlgorithm.isApplyPerSlice()
boolean	Voronoi2DAlgorithm.isBinarize()
void	ConditionalInverterAlgorithm.setApplyPerSlice(boolean applyPerSlice)
void	Voronoi2DAlgorithm.setBinarize(boolean binarize)
void	ConditionalInverterAlgorithm.setCondition(DefaultExpressionParameter condition)
void	ConnectedComponentsLabeling2DAlgorithm.setConnectivity(Neighborhood2D connectivity)
void	ConnectedComponentsLabeling3DAlgorithm.setConnectivity(Neighborhood2D connectivity)
void	RemoveLargestRegionAlgorithm.setIterations(int iterations)
void	BitwiseLogicalOperationAlgorithm.setLogicalOperation(LogicalOperation logicalOperation)
void	VolumeOpening3DAlgorithm.setMinPixels(int minPixels)
void	VolumeOpening2DAlgorithm.setMinPixels(int minPixels)
void	ConnectedComponentsLabeling2DAlgorithm.setOutputType(JIPipeDataInfoRef outputType)
void	ConnectedComponentsLabeling3DAlgorithm.setOutputType(JIPipeDataInfoRef outputType)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur with annotations of type JIPipeParameter

Modifier and Type	Method and Description
double	MedianBlurFilter2DAlgorithm.getRadius()
float	BoxFilter3DAlgorithm.getRadiusX()
float	MedianBlurFilter3DAlgorithm.getRadiusX()
float	BoxFilter3DAlgorithm.getRadiusY()
float	MedianBlurFilter3DAlgorithm.getRadiusY()
float	BoxFilter3DAlgorithm.getRadiusZ()
float	MedianBlurFilter3DAlgorithm.getRadiusZ()
double	GaussianBlur2DAlgorithm.getSigmaX()
double	GaussianBlur3DAlgorithm.getSigmaX()
double	GaussianBlur2DAlgorithm.getSigmaY()
double	GaussianBlur3DAlgorithm.getSigmaY()
double	GaussianBlur3DAlgorithm.getSigmaZ()
boolean	MedianBlurFilter2DAlgorithm.setRadius(double radius)
void	BoxFilter3DAlgorithm.setRadiusX(float radiusX)
void	MedianBlurFilter3DAlgorithm.setRadiusX(float radiusX)
void	BoxFilter3DAlgorithm.setRadiusY(float radiusY)
void	MedianBlurFilter3DAlgorithm.setRadiusY(float radiusY)
void	BoxFilter3DAlgorithm.setRadiusZ(float radiusZ)
void	MedianBlurFilter3DAlgorithm.setRadiusZ(float radiusZ)
void	GaussianBlur2DAlgorithm.setSigmaX(double sigmaX)
void	GaussianBlur3DAlgorithm.setSigmaX(double sigmaX)
void	GaussianBlur2DAlgorithm.setSigmaY(double sigmaY)
void	GaussianBlur3DAlgorithm.setSigmaY(double sigmaY)
void	GaussianBlur3DAlgorithm.setSigmaZ(double sigmaZ)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.calibration

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.calibration with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalColorParameter	DrawScaleBarAlgorithm.getBackgroundColor()
Color	DrawScaleBarAlgorithm.getBarColor()
int	DrawScaleBarAlgorithm.getBarThickness()
FontFamilyParameter	DrawScaleBarAlgorithm.TextSettings.getFontFamily()
int	DrawScaleBarAlgorithm.TextSettings.getFontSize()
FontStyleParameter	DrawScaleBarAlgorithm.TextSettings.getFontStyle()
OptionalQuantity	DrawScaleBarAlgorithm.getHorizontalBarSize()
DefaultExpressionParameter	DrawScaleBarAlgorithm.TextSettings.getHorizontalLabel()
ScaleBarGenerator.ScaleBarPosition	DrawScaleBarAlgorithm.getLocation()
OptionalDefaultExpressionParameter	SetPhysicalDimensionsByExpressionsAlgorithm.getPhysicalDimensionT()
OptionalQuantity	SetPhysicalDimensionsAlgorithm.getPhysicalDimensionT()
OptionalAnnotationNameParameter	SetPhysicalDimensionsByAnnotationsAlgorithm.getPhysicalDimensionT()
OptionalDefaultExpressionParameter	SetPhysicalDimensionsByExpressionsAlgorithm.getPhysicalDimensionValue()
OptionalQuantity	SetPhysicalDimensionsAlgorithm.getPhysicalDimensionValue()
OptionalAnnotationNameParameter	SetPhysicalDimensionsByAnnotationsAlgorithm.getPhysicalDimensionValue()
OptionalDefaultExpressionParameter	SetPhysicalDimensionsByExpressionsAlgorithm.getPhysicalDimensionX()
OptionalQuantity	SetPhysicalDimensionsAlgorithm.getPhysicalDimensionX()
OptionalAnnotationNameParameter	SetPhysicalDimensionsByAnnotationsAlgorithm.getPhysicalDimensionX()
OptionalDefaultExpressionParameter	SetPhysicalDimensionsByExpressionsAlgorithm.getPhysicalDimensionY()
OptionalQuantity	SetPhysicalDimensionsAlgorithm.getPhysicalDimensionY()
OptionalAnnotationNameParameter	SetPhysicalDimensionsByAnnotationsAlgorithm.getPhysicalDimensionY()
OptionalDefaultExpressionParameter	SetPhysicalDimensionsByExpressionsAlgorithm.getPhysicalDimensionZ()
OptionalQuantity	SetPhysicalDimensionsAlgorithm.getPhysicalDimensionZ()
OptionalAnnotationNameParameter	SetPhysicalDimensionsByAnnotationsAlgorithm.getPhysicalDimensionZ()
Color	DrawScaleBarAlgorithm.TextSettings.getTextColor()
DrawScaleBarAlgorithm.TextSettings	DrawScaleBarAlgorithm.getTextSettings()
OptionalQuantity	DrawScaleBarAlgorithm.getVerticalBarSize()
DefaultExpressionParameter	DrawScaleBarAlgorithm.TextSettings.getVerticalLabel()
boolean	DrawScaleBarAlgorithm.isDrawHorizontal()
boolean	DrawScaleBarAlgorithm.isDrawVertical()
boolean	DrawScaleBarAlgorithm.TextSettings.isHideLabels()
void	DrawScaleBarAlgorithm.setBackgroundColor(OptionalColorParameter backgroundColor)
void	DrawScaleBarAlgorithm.setBarColor(Color barColor)
void	DrawScaleBarAlgorithm.setBarThickness(int barThickness)
void	DrawScaleBarAlgorithm.setDrawHorizontal(boolean drawHorizontal)
void	DrawScaleBarAlgorithm.setDrawVertical(boolean drawVertical)
void	DrawScaleBarAlgorithm.TextSettings.setFontFamily(FontFamilyParameter fontFamily)
void	DrawScaleBarAlgorithm.TextSettings.setFontSize(int fontSize)
void	DrawScaleBarAlgorithm.TextSettings.setFontStyle(FontStyleParameter fontStyle)
void	DrawScaleBarAlgorithm.TextSettings.setHideLabels(boolean hideLabels)
void	DrawScaleBarAlgorithm.setHorizontalBarSize(OptionalQuantity horizontalBarSize)
void	DrawScaleBarAlgorithm.TextSettings.setHorizontalLabel(DefaultExpressionParameter horizontalLabel)
void	DrawScaleBarAlgorithm.setLocation(ScaleBarGenerator.ScaleBarPosition location)
void	SetPhysicalDimensionsByAnnotationsAlgorithm.setPhysicalDimensionT(OptionalAnnotationNameParameter physicalDimensionT)
void	SetPhysicalDimensionsByExpressionsAlgorithm.setPhysicalDimensionT(OptionalDefaultExpressionParameter physicalDimensionT)
void	SetPhysicalDimensionsAlgorithm.setPhysicalDimensionT(OptionalQuantity physicalDimensionT)
void	SetPhysicalDimensionsByAnnotationsAlgorithm.setPhysicalDimensionValue(OptionalAnnotationNameParameter physicalDimensionValue)
void	SetPhysicalDimensionsByExpressionsAlgorithm.setPhysicalDimensionValue(OptionalDefaultExpressionParameter physicalDimensionValue)
void	SetPhysicalDimensionsAlgorithm.setPhysicalDimensionValue(OptionalQuantity physicalDimensionValue)
void	SetPhysicalDimensionsByAnnotationsAlgorithm.setPhysicalDimensionX(OptionalAnnotationNameParameter physicalDimensionX)
void	SetPhysicalDimensionsByExpressionsAlgorithm.setPhysicalDimensionX(OptionalDefaultExpressionParameter physicalDimensionX)
void	SetPhysicalDimensionsAlgorithm.setPhysicalDimensionX(OptionalQuantity physicalDimensionX)
void	SetPhysicalDimensionsByAnnotationsAlgorithm.setPhysicalDimensionY(OptionalAnnotationNameParameter physicalDimensionY)
void	SetPhysicalDimensionsByExpressionsAlgorithm.setPhysicalDimensionY(OptionalDefaultExpressionParameter physicalDimensionY)
void	SetPhysicalDimensionsAlgorithm.setPhysicalDimensionY(OptionalQuantity physicalDimensionY)
void	SetPhysicalDimensionsByAnnotationsAlgorithm.setPhysicalDimensionZ(OptionalAnnotationNameParameter physicalDimensionZ)
void	SetPhysicalDimensionsByExpressionsAlgorithm.setPhysicalDimensionZ(OptionalDefaultExpressionParameter physicalDimensionZ)
void	SetPhysicalDimensionsAlgorithm.setPhysicalDimensionZ(OptionalQuantity physicalDimensionZ)
void	DrawScaleBarAlgorithm.TextSettings.setTextColor(Color textColor)
void	DrawScaleBarAlgorithm.setVerticalBarSize(OptionalQuantity verticalBarSize)
void	DrawScaleBarAlgorithm.TextSettings.setVerticalLabel(DefaultExpressionParameter verticalLabel)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.colocalization

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.colocalization with annotations of type JIPipeParameter

Modifier and Type	Method and Description
String	Coloc2Node.getChannel1Name()
String	Coloc2Node.getChannel2Name()
int	Coloc2Node.Settings.getCostesRandomizations()
OptionalAnnotationNameParameter	Coloc2Node.getHistogramNameAnnotation()
OptionalAnnotationNameParameter	Coloc2Node.getPlotNameAnnotation()
int	Coloc2Node.Settings.getPsf()
Coloc2Node.Settings	Coloc2Node.getSettings()
AutoThresholdRegression.Implementation	Coloc2Node.Settings.getThresholdRegression()
boolean	Coloc2Node.Settings.isCostesSignificanceTest()
boolean	Coloc2Node.isInputMasks()
boolean	Coloc2Node.Settings.isIntensityHistogram2D()
boolean	Coloc2Node.Settings.isKendallTauRankCorrelation()
boolean	Coloc2Node.Settings.isLiHistogramChannel1()
boolean	Coloc2Node.Settings.isLiHistogramChannel2()
boolean	Coloc2Node.Settings.isLiICQ()
boolean	Coloc2Node.Settings.isMandersCorrelation()
boolean	Coloc2Node.isOutputWarnings()
boolean	Coloc2Node.Settings.isSpearmanRankCorrelation()
void	Coloc2Node.setChannel1Name(String channel1Name)
void	Coloc2Node.setChannel2Name(String channel2Name)
void	Coloc2Node.Settings.setCostesRandomizations(int costesRandomizations)
void	Coloc2Node.Settings.setCostesSignificanceTest(boolean costesSignificanceTest)
void	Coloc2Node.setHistogramNameAnnotation(OptionalAnnotationNameParameter histogramNameAnnotation)
void	Coloc2Node.setInputMasks(boolean inputMasks)
void	Coloc2Node.Settings.setIntensityHistogram2D(boolean intensityHistogram2D)
void	Coloc2Node.Settings.setKendallTauRankCorrelation(boolean kendallTauRankCorrelation)
void	Coloc2Node.Settings.setLiHistogramChannel1(boolean liHistogramChannel1)
void	Coloc2Node.Settings.setLiHistogramChannel2(boolean liHistogramChannel2)
void	Coloc2Node.Settings.setLiICQ(boolean liICQ)
void	Coloc2Node.Settings.setMandersCorrelation(boolean mandersCorrelation)
void	Coloc2Node.setOutputWarnings(boolean outputWarnings)
void	Coloc2Node.setPlotNameAnnotation(OptionalAnnotationNameParameter plotNameAnnotation)
void	Coloc2Node.Settings.setPsf(int psf)
void	Coloc2Node.Settings.setSpearmanRankCorrelation(boolean spearmanRankCorrelation)
void	Coloc2Node.Settings.setThresholdRegression(AutoThresholdRegression.Implementation thresholdRegression)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color with annotations of type JIPipeParameter

Modifier and Type	Method and Description
String	SplitChannelsAlgorithm.getAnnotationColumnChannelIndex() Deprecated.
String	SplitChannelsAlgorithm.getAnnotationColumnSlotName() Deprecated.
BlendImagesAlgorithm.BlendMode	BlendImagesAlgorithm.Layer.getBlendMode()
InputSlotMapParameterCollection	OverlayImagesAlgorithm.getChannelColorAssignment() Deprecated.
InputSlotMapParameterCollection	MergeChannelsAlgorithm.getChannelColorAssignment()
OptionalAnnotationNameParameter	NewSplitChannelsAlgorithm.getChannelIndexAnnotation()
OptionalAnnotationNameParameter	NewSplitChannelsAlgorithm.getChannelNameAnnotation()
IntegerAndIntegerPairParameter.List	ArrangeChannelsAlgorithm.getChannelReordering()
OutputSlotMapParameterCollection	SplitChannelsAlgorithm.getChannelToSlotAssignment() Deprecated.
OutputSlotMapParameterCollection	NewSplitChannelsAlgorithm.getChannelToSlotAssignment()
Color	OverlayImagesAlgorithm.Channel.getColor()
Color	SetToColorAlgorithm.getColor()
DefaultExpressionParameter	ColorToGreyscaleExpression2D.getExpression()
InputSlotMapParameterCollection	BlendImagesAlgorithm.getLayers()
double	OverlayImagesAlgorithm.Channel.getOpacity()
double	BlendImagesAlgorithm.Layer.getOpacity()
JIPipeDataInfoRef	ColorToGreyscaleExpression2D.getOutputType()
int	BlendImagesAlgorithm.Layer.getPriority()
double	SetToValueAlgorithm.getValue()
boolean	SplitChannelsAlgorithm.isAnnotateWithChannelIndex() Deprecated.
boolean	SplitChannelsAlgorithm.isAnnotateWithSlotName() Deprecated.
boolean	OverlayImagesAlgorithm.Channel.isBlackToAlpha()
boolean	MergeChannelsAlgorithm.isCreateComposite()
boolean	SplitChannelsAlgorithm.isIgnoreMissingChannels() Deprecated.
boolean	NewSplitChannelsAlgorithm.isIgnoreMissingChannels()
boolean	ArrangeChannelsAlgorithm.isKeepSameChannelCount()
boolean	BlendImagesAlgorithm.isRenderGreyscaleImages()
void	SplitChannelsAlgorithm.setAnnotateWithChannelIndex(boolean annotateWithChannelIndex) Deprecated.
void	SplitChannelsAlgorithm.setAnnotateWithSlotName(boolean annotateWithSlotName) Deprecated.
void	SplitChannelsAlgorithm.setAnnotationColumnChannelIndex(String annotationColumnChannelIndex) Deprecated.
void	SplitChannelsAlgorithm.setAnnotationColumnSlotName(String annotationColumnSlotName) Deprecated.
void	OverlayImagesAlgorithm.Channel.setBlackToAlpha(boolean blackToAlpha)
void	BlendImagesAlgorithm.Layer.setBlendMode(BlendImagesAlgorithm.BlendMode blendMode)
void	NewSplitChannelsAlgorithm.setChannelIndexAnnotation(OptionalAnnotationNameParameter channelIndexAnnotation)
void	NewSplitChannelsAlgorithm.setChannelNameAnnotation(OptionalAnnotationNameParameter channelNameAnnotation)
void	ArrangeChannelsAlgorithm.setChannelReordering(IntegerAndIntegerPairParameter.List channelReordering)
void	OverlayImagesAlgorithm.Channel.setColor(Color color)
void	SetToColorAlgorithm.setColor(Color color)
void	MergeChannelsAlgorithm.setCreateComposite(boolean createComposite)
void	ColorToGreyscaleExpression2D.setExpression(DefaultExpressionParameter expression)
void	SplitChannelsAlgorithm.setIgnoreMissingChannels(boolean ignoreMissingChannels) Deprecated.
void	NewSplitChannelsAlgorithm.setIgnoreMissingChannels(boolean ignoreMissingChannels)
void	ArrangeChannelsAlgorithm.setKeepSameChannelCount(boolean keepSameChannelCount)
void	OverlayImagesAlgorithm.Channel.setOpacity(double opacity)
void	BlendImagesAlgorithm.Layer.setOpacity(double opacity)
void	ColorToGreyscaleExpression2D.setOutputType(JIPipeDataInfoRef outputType)
void	BlendImagesAlgorithm.Layer.setPriority(int priority)
void	BlendImagesAlgorithm.setRenderGreyscaleImages(boolean renderGreyscaleImages)
void	SetToValueAlgorithm.setValue(double value)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast with annotations of type JIPipeParameter

Modifier and Type	Method and Description
int	CLAHEContrastEnhancer.getBins()
int	CLAHEContrastEnhancer.getBlockRadius()
GaussianBlur2DAlgorithm	IlluminationCorrection2DAlgorithm.getGaussianAlgorithm()
float	CLAHEContrastEnhancer.getMaxSlope()
HistogramContrastEnhancerAlgorithm.Method	HistogramContrastEnhancerAlgorithm.getMethod()
double	HistogramContrastEnhancerAlgorithm.getSaturatedPixels()
boolean	CLAHEContrastEnhancer.isFastMode()
boolean	HistogramContrastEnhancerAlgorithm.isUseStackHistogram()
void	CLAHEContrastEnhancer.setBins(int bins)
void	CLAHEContrastEnhancer.setBlockRadius(int blockRadius)
void	CLAHEContrastEnhancer.setFastMode(boolean fastMode)
void	CLAHEContrastEnhancer.setMaxSlope(float maxSlope)
void	HistogramContrastEnhancerAlgorithm.setMethod(HistogramContrastEnhancerAlgorithm.Method method)
boolean	HistogramContrastEnhancerAlgorithm.setSaturatedPixels(double saturatedPixels)
void	HistogramContrastEnhancerAlgorithm.setUseStackHistogram(boolean useStackHistogram)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convert

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convert with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeDynamicParameterCollection	TableToImageAlgorithm.getColumnAssignment()
OptionalIntegerParameter	TableToImageAlgorithm.getCustomHeight()
OptionalIntegerParameter	TableToImageAlgorithm.getCustomSizeC()
OptionalIntegerParameter	TableToImageAlgorithm.getCustomSizeT()
OptionalIntegerParameter	TableToImageAlgorithm.getCustomSizeZ()
OptionalIntegerParameter	TableToImageAlgorithm.getCustomWidth()
JIPipeDataInfoRef	ConvertImageAlgorithm.getGeneratedImageType()
JIPipeDataInfoRef	MatrixToImageAlgorithm.getOutputImageType()
JIPipeDataInfoRef	TableToImageAlgorithm.getOutputImageType()
String	ImageToTableAlgorithm.getSliceAnnotation()
boolean	ImageToTableAlgorithm.isApplyPerSlice()
void	ImageToTableAlgorithm.setApplyPerSlice(boolean applyPerSlice)
void	TableToImageAlgorithm.setCustomHeight(OptionalIntegerParameter customHeight)
void	TableToImageAlgorithm.setCustomSizeC(OptionalIntegerParameter customSizeC)
void	TableToImageAlgorithm.setCustomSizeT(OptionalIntegerParameter customSizeT)
void	TableToImageAlgorithm.setCustomSizeZ(OptionalIntegerParameter customSizeZ)
void	TableToImageAlgorithm.setCustomWidth(OptionalIntegerParameter customWidth)
void	ConvertImageAlgorithm.setGeneratedImageType(JIPipeDataInfoRef generatedImageType)
void	MatrixToImageAlgorithm.setOutputImageType(JIPipeDataInfoRef outputImageType)
void	TableToImageAlgorithm.setOutputImageType(JIPipeDataInfoRef outputImageType)
void	ImageToTableAlgorithm.setSliceAnnotation(String sliceAnnotation)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve with annotations of type JIPipeParameter

Modifier and Type	Method and Description
Matrix2DFloat	ConvolveByParameter2DAlgorithm.getMatrix()
boolean	ConvolveByParameter2DAlgorithm.isNormalize()
boolean	ConvolveByImage2DAlgorithm.isNormalize()
void	ConvolveByParameter2DAlgorithm.setMatrix(Matrix2DFloat matrix)
void	ConvolveByParameter2DAlgorithm.setNormalize(boolean normalize)
void	ConvolveByImage2DAlgorithm.setNormalize(boolean normalize)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OMEExporterSettings	OMEImageFromImagePlus.getExporterSettings()
PathQueryExpression	ImageStackFromFolder.getFilterExpression()
JIPipeDataInfoRef	ImageStackFromFolder.getGeneratedImageType()
HyperstackDimension	ImageStackFromFolder.getOutputDimension()
IntegerRange	ImageStackFromFolder.getSlicesToImport()
boolean	ImageStackFromFolder.isIgnoreInvalidSlices()
boolean	ImageStackFromFolder.isRemoveLut()
boolean	ImageStackFromFolder.isSortFilesNumerically()
void	ImageStackFromFolder.setFilterExpression(PathQueryExpression filterExpression)
void	ImageStackFromFolder.setGeneratedImageType(JIPipeDataInfoRef generatedImageType)
void	ImageStackFromFolder.setIgnoreInvalidSlices(boolean ignoreInvalidSlices)
void	ImageStackFromFolder.setOutputDimension(HyperstackDimension outputDimension)
void	ImageStackFromFolder.setRemoveLut(boolean removeLut)
void	ImageStackFromFolder.setSlicesToImport(IntegerRange slicesToImport)
void	ImageStackFromFolder.setSortFilesNumerically(boolean sortFilesNumerically)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalAnnotationNameParameter	HyperstackSlicerAlgorithm.getAnnotateC()
OptionalAnnotationNameParameter	ExpressionSlicerAlgorithm.getAnnotateC()
OptionalAnnotationNameParameter	HyperstackSlicerAlgorithm.getAnnotateT()
OptionalAnnotationNameParameter	ExpressionSlicerAlgorithm.getAnnotateT()
OptionalAnnotationNameParameter	HyperstackSlicerAlgorithm.getAnnotateZ()
OptionalAnnotationNameParameter	ExpressionSlicerAlgorithm.getAnnotateZ()
OptionalAnnotationNameParameter	StackTo2DAlgorithm.getAnnotationC()
OptionalAnnotationNameParameter	StackTo2DAlgorithm.getAnnotationIndex()
JIPipeTextAnnotationMergeMode	SplitByDimensionAlgorithm.getAnnotationMergeStrategy()
OptionalAnnotationNameParameter	StackTo2DAlgorithm.getAnnotationT()
String	StackSplitterAlgorithm.getAnnotationType()
OptionalAnnotationNameParameter	StackTo2DAlgorithm.getAnnotationZ()
Color	InputImagesToMontage.getBackgroundColor()
Color	StackToMontageAlgorithm.getBackgroundColor()
int	MontageToStackAlgorithm.getBorderWidth()
int	InputImagesToMontage.getBorderWidth()
int	StackToMontageAlgorithm.getBorderWidth()
CanvasEqualizer	InputImagesToMontage.getCanvasEqualizer()
int	MontageToStackAlgorithm.getColumns()
OptionalIntegerParameter	InputImagesToMontage.getColumns()
OptionalIntegerParameter	StackToMontageAlgorithm.getColumns()
String	CreateStackAlgorithm.getCounterAnnotation()
HyperstackDimension	StackToDimensionMergerAlgorithm.getCreatedDimension()
DefaultExpressionParameter	ExpressionSlicerAlgorithm.getExpressionC()
DefaultExpressionParameter	ExpressionSlicerAlgorithm.getExpressionT()
DefaultExpressionParameter	ExpressionSlicerAlgorithm.getExpressionZ()
OptionalIntegerParameter	StackToMontageAlgorithm.getFirstIndex()
int	InputImagesToMontage.getFontSize()
int	StackToMontageAlgorithm.getFontSize()
Color	InputImagesToMontage.getForegroundColor()
Color	StackToMontageAlgorithm.getForegroundColor()
int	StackToMontageAlgorithm.getIndexIncrement()
IntegerRange	HyperstackSlicerAlgorithm.getIndicesC()
IntegerRange	HyperstackSlicerAlgorithm.getIndicesT()
IntegerRange	HyperstackSlicerAlgorithm.getIndicesZ()
JIPipeDataByMetadataExporter	InputImagesToMontage.getLabelGenerator()
OptionalIntegerParameter	StackToMontageAlgorithm.getLastIndex()
ZProjectorAlgorithm.Method	ZProjectorAlgorithm.getMethod()
ZProjectorAlgorithm.Method	NewZProjectorAlgorithm.getMethod()
HyperstackDimension	CreateStackAlgorithm.getOutputDimension()
OutputSlotMapParameterCollection	SplitByDimensionAlgorithm.getOutputIndices()
Anchor	ResliceAlgorithm.getPlaneStartLocation()
HyperstackDimension	NewZProjectorAlgorithm.getProjectedAxis()
OptionalIntegerRange	NewZProjectorAlgorithm.getRestrictToIndices()
int	MontageToStackAlgorithm.getRows()
OptionalIntegerParameter	InputImagesToMontage.getRows()
OptionalIntegerParameter	StackToMontageAlgorithm.getRows()
double	InputImagesToMontage.getScale()
double	StackToMontageAlgorithm.getScale()
DefaultExpressionParameter	Merge2DToHyperstackAlgorithm.getSliceCLocation()
DefaultExpressionParameter	Merge2DToHyperstackAlgorithm.getSliceTLocation()
DefaultExpressionParameter	Merge2DToHyperstackAlgorithm.getSliceZLocation()
OutputSlotMapParameterCollection	StackSplitterAlgorithm.getStackAssignments()
int	ZProjectorAlgorithm.getStartSlice()
int	ZProjectorAlgorithm.getStopSlice()
HyperstackDimension	ReorderDimensionsAlgorithm.getTargetC()
HyperstackDimension	StackCombinerAlgorithm.getTargetDimension()
HyperstackDimension	SplitByDimensionAlgorithm.getTargetDimension()
OptionalAnnotationNameParameter	SplitByDimensionAlgorithm.getTargetDimensionAnnotation()
HyperstackDimension	ReorderDimensionsAlgorithm.getTargetT()
HyperstackDimension	ReorderDimensionsAlgorithm.getTargetZ()
boolean	InputImagesToMontage.isDrawLabels()
boolean	ResliceAlgorithm.isFlipVertical()
boolean	StackSplitterAlgorithm.isIgnoreMissingSlices()
boolean	ExpressionSlicerAlgorithm.isIteratePerC()
boolean	ExpressionSlicerAlgorithm.isIteratePerT()
boolean	ExpressionSlicerAlgorithm.isIteratePerZ()
boolean	StackToMontageAlgorithm.isLabels()
boolean	ResliceAlgorithm.isNoInterpolation()
boolean	ZProjectorAlgorithm.isProjectAllHyperstackTimePoints()
boolean	ExpressionSlicerAlgorithm.isRemoveDuplicates()
boolean	ResliceAlgorithm.isRotate()
boolean	StackSplitterAlgorithm.isSortedStackIds()
boolean	StackSplitterAlgorithm.isUniqueStackIds()
void	HyperstackSlicerAlgorithm.setAnnotateC(OptionalAnnotationNameParameter annotateC)
void	ExpressionSlicerAlgorithm.setAnnotateC(OptionalAnnotationNameParameter annotateC)
void	HyperstackSlicerAlgorithm.setAnnotateT(OptionalAnnotationNameParameter annotateT)
void	ExpressionSlicerAlgorithm.setAnnotateT(OptionalAnnotationNameParameter annotateT)
void	HyperstackSlicerAlgorithm.setAnnotateZ(OptionalAnnotationNameParameter annotateZ)
void	ExpressionSlicerAlgorithm.setAnnotateZ(OptionalAnnotationNameParameter annotateZ)
void	StackTo2DAlgorithm.setAnnotationC(OptionalAnnotationNameParameter annotationC)
void	StackTo2DAlgorithm.setAnnotationIndex(OptionalAnnotationNameParameter annotationIndex)
void	SplitByDimensionAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	StackTo2DAlgorithm.setAnnotationT(OptionalAnnotationNameParameter annotationT)
void	StackSplitterAlgorithm.setAnnotationType(String annotationType)
void	StackTo2DAlgorithm.setAnnotationZ(OptionalAnnotationNameParameter annotationZ)
void	InputImagesToMontage.setBackgroundColor(Color backgroundColor)
void	StackToMontageAlgorithm.setBackgroundColor(Color backgroundColor)
void	MontageToStackAlgorithm.setBorderWidth(int borderWidth)
void	InputImagesToMontage.setBorderWidth(int borderWidth)
void	StackToMontageAlgorithm.setBorderWidth(int borderWidth)
void	MontageToStackAlgorithm.setColumns(int columns)
void	InputImagesToMontage.setColumns(OptionalIntegerParameter columns)
void	StackToMontageAlgorithm.setColumns(OptionalIntegerParameter columns)
void	CreateStackAlgorithm.setCounterAnnotation(String counterAnnotation)
void	StackToDimensionMergerAlgorithm.setCreatedDimension(HyperstackDimension createdDimension)
void	InputImagesToMontage.setDrawLabels(boolean drawLabels)
void	ExpressionSlicerAlgorithm.setExpressionC(DefaultExpressionParameter expressionC)
void	ExpressionSlicerAlgorithm.setExpressionT(DefaultExpressionParameter expressionT)
void	ExpressionSlicerAlgorithm.setExpressionZ(DefaultExpressionParameter expressionZ)
void	StackToMontageAlgorithm.setFirstIndex(OptionalIntegerParameter firstIndex)
void	ResliceAlgorithm.setFlipVertical(boolean flipVertical)
void	InputImagesToMontage.setFontSize(int fontSize)
void	StackToMontageAlgorithm.setFontSize(int fontSize)
void	InputImagesToMontage.setForegroundColor(Color foregroundColor)
void	StackToMontageAlgorithm.setForegroundColor(Color foregroundColor)
void	StackSplitterAlgorithm.setIgnoreMissingSlices(boolean ignoreMissingSlices)
void	StackToMontageAlgorithm.setIndexIncrement(int indexIncrement)
void	HyperstackSlicerAlgorithm.setIndicesC(IntegerRange indicesC)
void	HyperstackSlicerAlgorithm.setIndicesT(IntegerRange indicesT)
void	HyperstackSlicerAlgorithm.setIndicesZ(IntegerRange indicesZ)
void	ExpressionSlicerAlgorithm.setIteratePerC(boolean iteratePerC)
void	ExpressionSlicerAlgorithm.setIteratePerT(boolean iteratePerT)
void	ExpressionSlicerAlgorithm.setIteratePerZ(boolean iteratePerZ)
void	StackToMontageAlgorithm.setLabels(boolean labels)
void	StackToMontageAlgorithm.setLastIndex(OptionalIntegerParameter lastIndex)
void	ZProjectorAlgorithm.setMethod(ZProjectorAlgorithm.Method method)
void	NewZProjectorAlgorithm.setMethod(ZProjectorAlgorithm.Method method)
void	ResliceAlgorithm.setNoInterpolation(boolean noInterpolation)
void	CreateStackAlgorithm.setOutputDimension(HyperstackDimension outputDimension)
void	ResliceAlgorithm.setPlaneStartLocation(Anchor planeStartLocation)
void	ZProjectorAlgorithm.setProjectAllHyperstackTimePoints(boolean projectAllHyperstackTimePoints)
void	NewZProjectorAlgorithm.setProjectedAxis(HyperstackDimension projectedAxis)
void	ExpressionSlicerAlgorithm.setRemoveDuplicates(boolean removeDuplicates)
void	NewZProjectorAlgorithm.setRestrictToIndices(OptionalIntegerRange restrictToIndices)
void	ResliceAlgorithm.setRotate(boolean rotate)
void	MontageToStackAlgorithm.setRows(int rows)
void	InputImagesToMontage.setRows(OptionalIntegerParameter rows)
void	StackToMontageAlgorithm.setRows(OptionalIntegerParameter rows)
void	InputImagesToMontage.setScale(double scale)
void	StackToMontageAlgorithm.setScale(double scale)
void	Merge2DToHyperstackAlgorithm.setSliceCLocation(DefaultExpressionParameter sliceCLocation)
void	Merge2DToHyperstackAlgorithm.setSliceTLocation(DefaultExpressionParameter sliceTLocation)
void	Merge2DToHyperstackAlgorithm.setSliceZLocation(DefaultExpressionParameter sliceZLocation)
void	StackSplitterAlgorithm.setSortedStackIds(boolean sortedStackIds)
boolean	ZProjectorAlgorithm.setStartSlice(int startSlice)
boolean	ZProjectorAlgorithm.setStopSlice(int stopSlice)
void	ReorderDimensionsAlgorithm.setTargetC(HyperstackDimension targetC)
void	StackCombinerAlgorithm.setTargetDimension(HyperstackDimension targetDimension)
void	SplitByDimensionAlgorithm.setTargetDimension(HyperstackDimension targetDimension)
void	SplitByDimensionAlgorithm.setTargetDimensionAnnotation(OptionalAnnotationNameParameter targetDimensionAnnotation)
void	ReorderDimensionsAlgorithm.setTargetT(HyperstackDimension targetT)
void	ReorderDimensionsAlgorithm.setTargetZ(HyperstackDimension targetZ)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge with annotations of type JIPipeParameter

Modifier and Type	Method and Description
float	CannyEdgeDetectorAlgorithm.getGaussianKernelRadius()
int	CannyEdgeDetectorAlgorithm.getGaussianKernelWidth()
double	CannyEdgeDetectorAlgorithm.getHighThreshold()
double	CannyEdgeDetectorAlgorithm.getLowThreshold()
LaplacianEdgeDetectorAlgorithm.Mode	LaplacianEdgeDetectorAlgorithm.getMode()
boolean	CannyEdgeDetectorAlgorithm.isNormalizeContrast()
boolean	LaplacianEdgeDetectorAlgorithm.isRemoveNegativeValues()
void	CannyEdgeDetectorAlgorithm.setGaussianKernelRadius(float gaussianKernelRadius)
void	CannyEdgeDetectorAlgorithm.setGaussianKernelWidth(int gaussianKernelWidth)
void	CannyEdgeDetectorAlgorithm.setHighThreshold(double highThreshold)
void	CannyEdgeDetectorAlgorithm.setLowThreshold(double lowThreshold)
void	LaplacianEdgeDetectorAlgorithm.setMode(LaplacianEdgeDetectorAlgorithm.Mode mode)
void	CannyEdgeDetectorAlgorithm.setNormalizeContrast(boolean normalizeContrast)
void	LaplacianEdgeDetectorAlgorithm.setRemoveNegativeValues(boolean removeNegativeValues)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features with annotations of type JIPipeParameter

Modifier and Type	Method and Description
double	MeijeringVesselness2DFeatures.getAlpha()
double	LocalMaxima2DAlgorithm.getHeightTolerance()
int	DirectionalFilter2DAlgorithm.getLineLength()
double	FrangiVesselnessFeatures.getMaximumScale()
double	FrangiVesselnessFeatures.getMinimumScale()
int	DirectionalFilter2DAlgorithm.getnDirections()
int	FrangiVesselnessFeatures.getNumScales()
inra.ijpb.morphology.directional.DirectionalFilter.Operation	DirectionalFilter2DAlgorithm.getOperation()
LocalMaxima2DAlgorithm.OutputType	LocalMaxima2DAlgorithm.getOutputType()
int	LaplacianOfGaussian2DAlgorithm.getRadius()
DoubleList	MeijeringVesselness2DFeatures.getScales()
double	DifferenceOfGaussian2DAlgorithm.getSigma0X()
double	DifferenceOfGaussian2DAlgorithm.getSigma0Y()
double	DifferenceOfGaussian2DAlgorithm.getSigma1X()
double	DifferenceOfGaussian2DAlgorithm.getSigma1Y()
FrangiVesselnessFeatures.SlicingMode	FrangiVesselnessFeatures.getSlicingMode()
double	LocalMaxima2DAlgorithm.getThreshold()
inra.ijpb.morphology.directional.DirectionalFilter.Type	DirectionalFilter2DAlgorithm.getType()
boolean	LocalMaxima2DAlgorithm.isExcludeOnEdges()
boolean	LocalMaxima2DAlgorithm.isInputIsEDM()
boolean	FrangiVesselnessFeatures.isInvert()
boolean	MeijeringVesselness2DFeatures.isInvert()
boolean	LocalMaxima2DAlgorithm.isStrict()
void	MeijeringVesselness2DFeatures.setAlpha(double alpha)
void	LocalMaxima2DAlgorithm.setExcludeOnEdges(boolean excludeOnEdges)
void	LocalMaxima2DAlgorithm.setHeightTolerance(double heightTolerance)
void	LocalMaxima2DAlgorithm.setInputIsEDM(boolean inputIsEDM)
void	FrangiVesselnessFeatures.setInvert(boolean invert)
void	MeijeringVesselness2DFeatures.setInvert(boolean invert)
void	DirectionalFilter2DAlgorithm.setLineLength(int lineLength)
void	FrangiVesselnessFeatures.setMaximumScale(double maximumScale)
void	FrangiVesselnessFeatures.setMinimumScale(double minimumScale)
void	DirectionalFilter2DAlgorithm.setnDirections(int nDirections)
void	FrangiVesselnessFeatures.setNumScales(int numScales)
void	DirectionalFilter2DAlgorithm.setOperation(inra.ijpb.morphology.directional.DirectionalFilter.Operation operation)
void	LocalMaxima2DAlgorithm.setOutputType(LocalMaxima2DAlgorithm.OutputType outputType)
void	LaplacianOfGaussian2DAlgorithm.setRadius(int radius)
void	MeijeringVesselness2DFeatures.setScales(DoubleList scales)
void	DifferenceOfGaussian2DAlgorithm.setSigma0X(double sigma0X)
void	DifferenceOfGaussian2DAlgorithm.setSigma0Y(double sigma0Y)
void	DifferenceOfGaussian2DAlgorithm.setSigma1X(double sigma1X)
void	DifferenceOfGaussian2DAlgorithm.setSigma1Y(double sigma1Y)
void	FrangiVesselnessFeatures.setSlicingMode(FrangiVesselnessFeatures.SlicingMode slicingMode)
void	LocalMaxima2DAlgorithm.setStrict(boolean strict)
void	LocalMaxima2DAlgorithm.setThreshold(double threshold)
void	DirectionalFilter2DAlgorithm.setType(inra.ijpb.morphology.directional.DirectionalFilter.Type type)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.forms

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.forms with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalIntegerParameter	DrawROIAlgorithm.getOverwriteSizeC()
OptionalIntegerParameter	DrawMaskAlgorithm.getOverwriteSizeC()
OptionalIntegerParameter	DrawROIAlgorithm.getOverwriteSizeT()
OptionalIntegerParameter	DrawMaskAlgorithm.getOverwriteSizeT()
OptionalIntegerParameter	DrawROIAlgorithm.getOverwriteSizeZ()
OptionalIntegerParameter	DrawMaskAlgorithm.getOverwriteSizeZ()
void	DrawROIAlgorithm.setOverwriteSizeC(OptionalIntegerParameter overwriteSizeC)
void	DrawMaskAlgorithm.setOverwriteSizeC(OptionalIntegerParameter overwriteSizeC)
void	DrawROIAlgorithm.setOverwriteSizeT(OptionalIntegerParameter overwriteSizeT)
void	DrawMaskAlgorithm.setOverwriteSizeT(OptionalIntegerParameter overwriteSizeT)
void	DrawROIAlgorithm.setOverwriteSizeZ(OptionalIntegerParameter overwriteSizeZ)
void	DrawMaskAlgorithm.setOverwriteSizeZ(OptionalIntegerParameter overwriteSizeZ)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate with annotations of type JIPipeParameter

Modifier and Type	Method and Description
ColorMap	GenerateLUTImageFromColorMap.getColorMap()
JIPipeDataInfoRef	GenerateZeroImage.getDataType()
inra.ijpb.morphology.Strel3D.Shape	GenerateStructureElement3DAlgorithm.getElement()
inra.ijpb.morphology.Strel.Shape	GenerateStructureElement2DAlgorithm.getElement()
DefaultExpressionParameter	GenerateMissingImageFromMathExpression2D.getFunction()
int	GenerateZeroImage.getHeight()
int	GenerateLUTImageFromColorMap.getHeight()
Matrix2DFloat	ImageFromMatrix2DAlgorithm.getMatrix()
OptionalIntegerParameter	GenerateMissingImageFromMathExpression2D.getOverwriteHeight()
OptionalIntegerParameter	GenerateMissingZeroImage.getOverwriteHeight()
OptionalBitDepth	GenerateMissingImageFromMathExpression2D.getOverwriteOutputBitDepth()
OptionalBitDepth	GenerateMissingZeroImage.getOverwriteOutputBitDepth()
OptionalIntegerParameter	GenerateMissingImageFromMathExpression2D.getOverwriteSizeC()
OptionalIntegerParameter	GenerateMissingZeroImage.getOverwriteSizeC()
OptionalIntegerParameter	GenerateMissingImageFromMathExpression2D.getOverwriteSizeT()
OptionalIntegerParameter	GenerateMissingZeroImage.getOverwriteSizeT()
OptionalIntegerParameter	GenerateMissingImageFromMathExpression2D.getOverwriteSizeZ()
OptionalIntegerParameter	GenerateMissingZeroImage.getOverwriteSizeZ()
OptionalIntegerParameter	GenerateMissingImageFromMathExpression2D.getOverwriteWidth()
OptionalIntegerParameter	GenerateMissingZeroImage.getOverwriteWidth()
ResultsTableData	GenerateMissingTablesAlgorithm.getPlaceholderTable()
int	GenerateStructureElement3DAlgorithm.getRadius()
int	GenerateStructureElement2DAlgorithm.getRadius()
int	GenerateZeroImage.getSizeC()
int	GenerateZeroImage.getSizeT()
int	GenerateZeroImage.getSizeZ()
int	GenerateZeroImage.getWidth()
int	GenerateLUTImageFromColorMap.getWidth()
boolean	GenerateMissingImageFromMathExpression2D.isGenerateOnePerBatch()
boolean	GenerateMissingZeroImage.isGenerateOnePerBatch()
void	GenerateLUTImageFromColorMap.setColorMap(ColorMap colorMap)
void	GenerateZeroImage.setDataType(JIPipeDataInfoRef dataType)
void	GenerateStructureElement2DAlgorithm.setElement(inra.ijpb.morphology.Strel.Shape element)
void	GenerateStructureElement3DAlgorithm.setElement(inra.ijpb.morphology.Strel3D.Shape element)
void	GenerateMissingImageFromMathExpression2D.setFunction(DefaultExpressionParameter transformation)
void	GenerateMissingImageFromMathExpression2D.setGenerateOnePerBatch(boolean generateOnePerBatch)
void	GenerateMissingZeroImage.setGenerateOnePerBatch(boolean generateOnePerBatch)
void	GenerateZeroImage.setHeight(int height)
void	GenerateLUTImageFromColorMap.setHeight(int height)
void	ImageFromMatrix2DAlgorithm.setMatrix(Matrix2DFloat matrix)
void	GenerateMissingImageFromMathExpression2D.setOverwriteHeight(OptionalIntegerParameter overwriteHeight)
void	GenerateMissingZeroImage.setOverwriteHeight(OptionalIntegerParameter overwriteHeight)
void	GenerateMissingImageFromMathExpression2D.setOverwriteOutputBitDepth(OptionalBitDepth overwriteOutputBitDepth)
void	GenerateMissingZeroImage.setOverwriteOutputBitDepth(OptionalBitDepth overwriteOutputBitDepth)
void	GenerateMissingImageFromMathExpression2D.setOverwriteSizeC(OptionalIntegerParameter overwriteSizeC)
void	GenerateMissingZeroImage.setOverwriteSizeC(OptionalIntegerParameter overwriteSizeC)
void	GenerateMissingImageFromMathExpression2D.setOverwriteSizeT(OptionalIntegerParameter overwriteSizeT)
void	GenerateMissingZeroImage.setOverwriteSizeT(OptionalIntegerParameter overwriteSizeT)
void	GenerateMissingImageFromMathExpression2D.setOverwriteSizeZ(OptionalIntegerParameter overwriteSizeZ)
void	GenerateMissingZeroImage.setOverwriteSizeZ(OptionalIntegerParameter overwriteSizeZ)
void	GenerateMissingImageFromMathExpression2D.setOverwriteWidth(OptionalIntegerParameter overwriteWidth)
void	GenerateMissingZeroImage.setOverwriteWidth(OptionalIntegerParameter overwriteWidth)
void	GenerateMissingTablesAlgorithm.setPlaceholderTable(ResultsTableData placeholderTable)
void	GenerateStructureElement3DAlgorithm.setRadius(int radius)
void	GenerateStructureElement2DAlgorithm.setRadius(int radius)
void	GenerateZeroImage.setSizeC(int sizeC)
void	GenerateZeroImage.setSizeT(int sizeT)
void	GenerateZeroImage.setSizeZ(int sizeZ)
void	GenerateZeroImage.setWidth(int width)
void	GenerateLUTImageFromColorMap.setWidth(int width)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io with annotations of type JIPipeParameter

Modifier and Type	Method and Description
AVICompression	ExportImageAlgorithm.getAviCompression()
AVICompression	ExportImage2Algorithm.getAviCompression()
JIPipeDataByMetadataExporter	ExportImageAlgorithm.getExporter()
JIPipeDataByMetadataExporter	ExportROIAlgorithm.getExporter()
JIPipeDataByMetadataExporter	ExportImage2Algorithm.getExporter()
JIPipeDataByMetadataExporter	ExportTableAlgorithm.getExporter()
JIPipeDataByMetadataExporter	ExportTableAsXLSXAlgorithm.getExporter()
ImageJDataExporterRef	RunImageJExporterAlgorithm.getExporterType()
ImageJExportParameters	RunImageJExporterAlgorithm.getExportParameters()
ExportImageAlgorithm.FileFormat	ExportImageAlgorithm.getFileFormat()
ExportImageAlgorithm.FileFormat	ExportImage2Algorithm.getFileFormat()
ExportTableAlgorithm.FileFormat	ExportTableAlgorithm.getFileFormat()
DefaultExpressionParameter	ImagePlusFromGUI.getImageFilters()
LogicalOperation	ImagePlusFromGUI.getImageFiltersOperation()
ImageJDataImporterRef	RunImageJImporterAlgorithm.getImporterType()
ImageJImportParameters	RunImageJImporterAlgorithm.getImportParameters()
int	ExportImageAlgorithm.getJpegQuality()
int	ExportImage2Algorithm.getJpegQuality()
HyperstackDimension	ExportImageAlgorithm.getMovieAnimatedDimension()
HyperstackDimension	ExportImage2Algorithm.getMovieAnimatedDimension()
int	ExportImageAlgorithm.getMovieFrameTime()
int	ExportImage2Algorithm.getMovieFrameTime()
DefaultExpressionParameter	ExportTableAsXLSXAlgorithm.getOrderExpression()
Path	ExportImageAlgorithm.getOutputDirectory()
Path	ExportROIAlgorithm.getOutputDirectory()
Path	ExportTableAlgorithm.getOutputDirectory()
Path	ExportTableAsXLSXAlgorithm.getOutputDirectory()
DefaultExpressionParameter	ExportTableAsXLSXAlgorithm.getSheetNameExpression()
DefaultExpressionParameter	ResultsTableFromGUI.getTitleFilterExpression()
boolean	ExportROIAlgorithm.isExportAsROIFile()
boolean	ImagePlusFromGUI.isOnlyActiveImage()
boolean	ExportImageAlgorithm.isRelativeToProjectDir()
boolean	ExportROIAlgorithm.isRelativeToProjectDir()
boolean	ExportTableAlgorithm.isRelativeToProjectDir()
boolean	ExportTableAsXLSXAlgorithm.isRelativeToProjectDir()
void	ExportImageAlgorithm.setAviCompression(AVICompression aviCompression)
void	ExportImage2Algorithm.setAviCompression(AVICompression aviCompression)
void	ExportROIAlgorithm.setExportAsROIFile(boolean exportAsROIFile)
void	RunImageJExporterAlgorithm.setExporterType(ImageJDataExporterRef exporterType)
void	ExportImageAlgorithm.setFileFormat(ExportImageAlgorithm.FileFormat fileFormat)
void	ExportImage2Algorithm.setFileFormat(ExportImageAlgorithm.FileFormat fileFormat)
void	ExportTableAlgorithm.setFileFormat(ExportTableAlgorithm.FileFormat fileFormat)
void	ImagePlusFromGUI.setImageFilters(DefaultExpressionParameter imageFilters)
void	ImagePlusFromGUI.setImageFiltersOperation(LogicalOperation imageFiltersOperation)
void	RunImageJImporterAlgorithm.setImporterType(ImageJDataImporterRef importerType)
boolean	ExportImageAlgorithm.setJpegQuality(int jpegQuality)
boolean	ExportImage2Algorithm.setJpegQuality(int jpegQuality)
void	ExportImageAlgorithm.setMovieAnimatedDimension(HyperstackDimension movieAnimatedDimension)
void	ExportImage2Algorithm.setMovieAnimatedDimension(HyperstackDimension movieAnimatedDimension)
void	ExportImageAlgorithm.setMovieFrameTime(int movieFrameTime)
void	ExportImage2Algorithm.setMovieFrameTime(int movieFrameTime)
void	ImagePlusFromGUI.setOnlyActiveImage(boolean onlyActiveImage)
void	ExportTableAsXLSXAlgorithm.setOrderExpression(DefaultExpressionParameter orderExpression)
void	ExportImageAlgorithm.setOutputDirectory(Path outputDirectory)
void	ExportROIAlgorithm.setOutputDirectory(Path outputDirectory)
void	ExportTableAlgorithm.setOutputDirectory(Path outputDirectory)
void	ExportTableAsXLSXAlgorithm.setOutputDirectory(Path outputDirectory)
void	ExportImageAlgorithm.setRelativeToProjectDir(boolean relativeToProjectDir)
void	ExportROIAlgorithm.setRelativeToProjectDir(boolean relativeToProjectDir)
void	ExportTableAlgorithm.setRelativeToProjectDir(boolean relativeToProjectDir)
void	ExportTableAsXLSXAlgorithm.setRelativeToProjectDir(boolean relativeToProjectDir)
void	ResultsTableFromGUI.setTitleFilterExpression(DefaultExpressionParameter titleFilterExpression)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.labels

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.labels with annotations of type JIPipeParameter

Modifier and Type	Method and Description
Color	LabelsToRGBAlgorithm.getBackgroundColor()
int	CropLabelsAlgorithm.getBorder()
inra.ijpb.color.ColorMaps.CommonLabelMaps	LabelsToRGBAlgorithm.getColorMap()
Neighborhood2D	LabelsToROIAlgorithm.getConnectivity()
OptionalAnnotationNameParameter	AnnotateWithOverlapMeasureLabelsAlgorithm.getDiceCoefficientAnnotation()
OptionalAnnotationNameParameter	AnnotateWithOverlapMeasureLabelsAlgorithm.getFalseNegativeErrorAnnotation()
OptionalAnnotationNameParameter	AnnotateWithOverlapMeasureLabelsAlgorithm.getFalsePositiveErrorAnnotation()
OptionalAnnotationNameParameter	AnnotateWithOverlapMeasureLabelsAlgorithm.getJaccardIndexAnnotation()
OptionalAnnotationNameParameter	CropLabelsAlgorithm.getLabelIdAnnotation()
OptionalIntegerRange	CropLabelsAlgorithm.getLabelIdLimit()
DefaultExpressionParameter	LabelsToROIAlgorithm.getLabelNameExpression()
double	DilateLabelsAlgorithm.getMaxRadius()
OverlapStatisticsSetParameter	OverlapMeasureLabelsAlgorithm.getMeasurements()
ImageStatisticsSetParameter	ExtractLabelStatisticsAlgorithm.getMeasurements()
LabelsToROIAlgorithm.Method	LabelsToROIAlgorithm.getMethod()
int	MergeSmallLabelsAlgorithm.getMinimumNumberOfPixels()
float	ExpandLabelsAlgorithm.getRatio()
IntRangeAndIntegerPairParameter.List	ReplaceLabelsAlgorithm.getReplacements()
ImageROITargetArea	MergeSmallLabelsAlgorithm.getSourceArea()
OptionalAnnotationNameParameter	AnnotateWithOverlapMeasureLabelsAlgorithm.getTotalOverlapAnnotation()
OptionalAnnotationNameParameter	AnnotateWithOverlapMeasureLabelsAlgorithm.getVolumeSimilarityAnnotation()
boolean	MergeSmallLabelsAlgorithm.isExcludeZero()
boolean	ExtractLabelStatisticsAlgorithm.isMeasureInPhysicalUnits()
boolean	MergeSmallLabelsAlgorithm.isMergeToLargerLabel()
boolean	LabelsToRGBAlgorithm.isShuffleLut()
void	LabelsToRGBAlgorithm.setBackgroundColor(Color backgroundColor)
void	CropLabelsAlgorithm.setBorder(int border)
void	LabelsToRGBAlgorithm.setColorMap(inra.ijpb.color.ColorMaps.CommonLabelMaps colorMap)
void	LabelsToROIAlgorithm.setConnectivity(Neighborhood2D connectivity)
void	AnnotateWithOverlapMeasureLabelsAlgorithm.setDiceCoefficientAnnotation(OptionalAnnotationNameParameter diceCoefficientAnnotation)
void	MergeSmallLabelsAlgorithm.setExcludeZero(boolean excludeZero)
void	AnnotateWithOverlapMeasureLabelsAlgorithm.setFalseNegativeErrorAnnotation(OptionalAnnotationNameParameter falseNegativeErrorAnnotation)
void	AnnotateWithOverlapMeasureLabelsAlgorithm.setFalsePositiveErrorAnnotation(OptionalAnnotationNameParameter falsePositiveErrorAnnotation)
void	AnnotateWithOverlapMeasureLabelsAlgorithm.setJaccardIndexAnnotation(OptionalAnnotationNameParameter jaccardIndexAnnotation)
void	CropLabelsAlgorithm.setLabelIdAnnotation(OptionalAnnotationNameParameter labelIdAnnotation)
void	CropLabelsAlgorithm.setLabelIdLimit(OptionalIntegerRange labelIdLimit)
void	LabelsToROIAlgorithm.setLabelNameExpression(DefaultExpressionParameter labelNameExpression)
void	DilateLabelsAlgorithm.setMaxRadius(double maxRadius)
void	ExtractLabelStatisticsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	ExtractLabelStatisticsAlgorithm.setMeasurements(ImageStatisticsSetParameter measurements)
void	OverlapMeasureLabelsAlgorithm.setMeasurements(OverlapStatisticsSetParameter measurements)
void	MergeSmallLabelsAlgorithm.setMergeToLargerLabel(boolean mergeToLargerLabel)
void	LabelsToROIAlgorithm.setMethod(LabelsToROIAlgorithm.Method method)
void	MergeSmallLabelsAlgorithm.setMinimumNumberOfPixels(int minimumNumberOfPixels)
void	ExpandLabelsAlgorithm.setRatio(float ratio)
void	ReplaceLabelsAlgorithm.setReplacements(IntRangeAndIntegerPairParameter.List replacements)
void	LabelsToRGBAlgorithm.setShuffleLut(boolean shuffleLut)
void	MergeSmallLabelsAlgorithm.setSourceArea(ImageROITargetArea sourceArea)
void	AnnotateWithOverlapMeasureLabelsAlgorithm.setTotalOverlapAnnotation(OptionalAnnotationNameParameter totalOverlapAnnotation)
void	AnnotateWithOverlapMeasureLabelsAlgorithm.setVolumeSimilarityAnnotation(OptionalAnnotationNameParameter volumeSimilarityAnnotation)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.labels.filter

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.labels.filter with annotations of type JIPipeParameter

Modifier and Type	Method and Description
CustomExpressionVariablesParameter	FilterLabelsByStatisticsAlgorithm.getCustomFilterVariables()
CustomExpressionVariablesParameter	FilterLabelsByOverlapAlgorithm.getCustomVariables()
DefaultExpressionParameter	FilterLabelsByExpression2DAlgorithm.getExpression()
DefaultExpressionParameter	FilterLabelsByExpression3DAlgorithm.getExpression()
DefaultExpressionParameter	FilterLabelsByStatisticsAlgorithm.getFilters()
int	RemoveLargestLabelAlgorithm.getIterations()
FilterLabelsByOverlapAlgorithm.LabelFilterSettings	FilterLabelsByOverlapAlgorithm.getLabels1Settings()
FilterLabelsByOverlapAlgorithm.LabelFilterSettings	FilterLabelsByOverlapAlgorithm.getLabels2Settings()
ImageStatisticsSetParameter	FilterLabelsByStatisticsAlgorithm.getMeasurements()
DefaultExpressionParameter	FilterLabelsByOverlapAlgorithm.LabelFilterSettings.getOverlapFilter()
ImageStatisticsSetParameter	FilterLabelsByOverlapAlgorithm.getOverlapFilterMeasurements()
IntegerRange	FilterLabelsByIdAlgorithm.getValues()
boolean	FilterLabelsByMaskAlgorithm.isDeleteMaskedLabels()
boolean	FilterLabelsByOverlapAlgorithm.LabelFilterSettings.isEnabled()
boolean	FilterLabelsByOverlapAlgorithm.LabelFilterSettings.isInvert()
boolean	FilterLabelsByIdAlgorithm.isKeepValues()
boolean	FilterLabelsByStatisticsAlgorithm.isMeasureInPhysicalUnits()
boolean	FilterLabelsByOverlapAlgorithm.LabelFilterSettings.isMeasureInPhysicalUnits()
boolean	FilterLabelsByOverlapAlgorithm.LabelFilterSettings.isOutputOverlaps()
void	FilterLabelsByMaskAlgorithm.setDeleteMaskedLabels(boolean deleteMaskedLabels)
void	FilterLabelsByOverlapAlgorithm.LabelFilterSettings.setEnabled(boolean enabled)
void	FilterLabelsByExpression2DAlgorithm.setExpression(DefaultExpressionParameter expression)
void	FilterLabelsByExpression3DAlgorithm.setExpression(DefaultExpressionParameter expression)
void	FilterLabelsByStatisticsAlgorithm.setFilters(DefaultExpressionParameter filters)
void	FilterLabelsByOverlapAlgorithm.LabelFilterSettings.setInvert(boolean invert)
void	RemoveLargestLabelAlgorithm.setIterations(int iterations)
void	FilterLabelsByIdAlgorithm.setKeepValues(boolean keepValues)
void	FilterLabelsByStatisticsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	FilterLabelsByOverlapAlgorithm.LabelFilterSettings.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	FilterLabelsByStatisticsAlgorithm.setMeasurements(ImageStatisticsSetParameter measurements)
void	FilterLabelsByOverlapAlgorithm.LabelFilterSettings.setOutputOverlaps(boolean outputOverlaps)
void	FilterLabelsByOverlapAlgorithm.LabelFilterSettings.setOverlapFilter(DefaultExpressionParameter overlapFilter)
void	FilterLabelsByOverlapAlgorithm.setOverlapFilterMeasurements(ImageStatisticsSetParameter overlapFilterMeasurements)
void	FilterLabelsByIdAlgorithm.setValues(IntegerRange values)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut with annotations of type JIPipeParameter

Modifier and Type	Method and Description
ColorMap	SetLUTFromColorMapAlgorithm.getColorMap()
Color	SetLUTFromColorsAlgorithm.getFirstColor()
Color	SetLUTFromColorsAlgorithm.getSecondColor()
boolean	SetLUTFromColorMapAlgorithm.isApplyToAllPlanes()
boolean	RemoveLUTAlgorithm.isApplyToAllPlanes()
boolean	SetLUTFromColorsAlgorithm.isApplyToAllPlanes()
boolean	LUTInverterAlgorithm.isApplyToAllPlanes()
boolean	SetLUTFromImageAlgorithm.isApplyToAllPlanes()
boolean	SetLUTFromColorMapAlgorithm.isDuplicateImage()
boolean	RemoveLUTAlgorithm.isDuplicateImage()
boolean	SetLUTFromColorsAlgorithm.isDuplicateImage()
boolean	LUTInverterAlgorithm.isDuplicateImage()
boolean	SetLUTFromImageAlgorithm.isDuplicateImage()
void	SetLUTFromColorMapAlgorithm.setApplyToAllPlanes(boolean applyToAllPlanes)
void	RemoveLUTAlgorithm.setApplyToAllPlanes(boolean applyToAllPlanes)
void	SetLUTFromColorsAlgorithm.setApplyToAllPlanes(boolean applyToAllPlanes)
void	LUTInverterAlgorithm.setApplyToAllPlanes(boolean applyToAllPlanes)
void	SetLUTFromImageAlgorithm.setApplyToAllPlanes(boolean applyToAllPlanes)
void	SetLUTFromColorMapAlgorithm.setColorMap(ColorMap colorMap)
void	SetLUTFromColorMapAlgorithm.setDuplicateImage(boolean duplicateImage)
void	RemoveLUTAlgorithm.setDuplicateImage(boolean duplicateImage)
void	SetLUTFromColorsAlgorithm.setDuplicateImage(boolean duplicateImage)
void	LUTInverterAlgorithm.setDuplicateImage(boolean duplicateImage)
void	SetLUTFromImageAlgorithm.setDuplicateImage(boolean duplicateImage)
void	SetLUTFromColorsAlgorithm.setFirstColor(Color firstColor)
void	SetLUTFromColorsAlgorithm.setSecondColor(Color secondColor)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math with annotations of type JIPipeParameter

Modifier and Type	Method and Description
HyperstackDimension	ApplyVectorMathExpression2DAlgorithm.getComponentDimension()
HyperstackDimension	GenerateVectorFromMathExpression.getComponentDimension()
int	RoundFloatImageAlgorithm.getDecimals()
EigenvalueSelection2D	Hessian2DAlgorithm.getEigenvalueSelection2D()
DefaultExpressionParameter	ImageCalculator2DExpression.getExpression()
DefaultExpressionParameter	ApplyColorMathExpression2DExpression.getExpression()
DefaultExpressionParameter	GenerateFromMathExpression2D.getFunction()
DefaultExpressionParameter	GenerateVectorFromMathExpression.getFunction()
int	GenerateFromMathExpression2D.getHeight()
int	GenerateVectorFromMathExpression.getHeight()
InputSlotMapParameterCollection	ImageCalculator2DAlgorithm.getOperands()
ImageCalculator2DAlgorithm.Operation	ImageCalculator2DAlgorithm.getOperation()
JIPipeDataInfoRef	ApplyColorMathExpression2DExpression.getOutputType()
int	ApplyVectorMathExpression2DAlgorithm.getOutputVectorSize()
double	RemoveNaNFilter2DAlgorithm.getRadius()
int	GenerateFromMathExpression2D.getSizeC()
int	GenerateVectorFromMathExpression.getSizeC()
int	GenerateFromMathExpression2D.getSizeT()
int	GenerateVectorFromMathExpression.getSizeT()
int	GenerateFromMathExpression2D.getSizeZ()
int	GenerateVectorFromMathExpression.getSizeZ()
double	Hessian2DAlgorithm.getSmoothing()
ApplyTransform2DAlgorithm.Transformation	ApplyTransform2DAlgorithm.getTransformation()
DefaultExpressionParameter	ApplyVectorMathExpression2DAlgorithm.getTransformation()
ApplyMath2DAlgorithm.Transformation	ApplyMath2DAlgorithm.getTransformation()
DefaultExpressionParameter	ApplyMathExpression2DAlgorithm.getTransformation()
double	ApplyMath2DAlgorithm.getValue()
int	GenerateFromMathExpression2D.getWidth()
int	GenerateVectorFromMathExpression.getWidth()
boolean	Hessian2DAlgorithm.isCompareAbsolute()
boolean	ImageCalculator2DAlgorithm.isFloatingPointOutput()
boolean	DivideByMaximumAlgorithm.isRecalibrate()
void	Hessian2DAlgorithm.setCompareAbsolute(boolean compareAbsolute)
void	ApplyVectorMathExpression2DAlgorithm.setComponentDimension(HyperstackDimension componentDimension)
void	GenerateVectorFromMathExpression.setComponentDimension(HyperstackDimension componentDimension)
void	RoundFloatImageAlgorithm.setDecimals(int decimals)
void	Hessian2DAlgorithm.setEigenvalueSelection2D(EigenvalueSelection2D eigenvalueSelection2D)
void	ImageCalculator2DExpression.setExpression(DefaultExpressionParameter expression)
void	ApplyColorMathExpression2DExpression.setExpression(DefaultExpressionParameter expression)
void	ImageCalculator2DAlgorithm.setFloatingPointOutput(boolean floatingPointOutput)
void	GenerateFromMathExpression2D.setFunction(DefaultExpressionParameter transformation)
void	GenerateVectorFromMathExpression.setFunction(DefaultExpressionParameter transformation)
void	GenerateFromMathExpression2D.setHeight(int height)
void	GenerateVectorFromMathExpression.setHeight(int height)
void	ImageCalculator2DAlgorithm.setOperation(ImageCalculator2DAlgorithm.Operation operation)
void	ApplyColorMathExpression2DExpression.setOutputType(JIPipeDataInfoRef outputType)
void	ApplyVectorMathExpression2DAlgorithm.setOutputVectorSize(int outputVectorSize)
boolean	RemoveNaNFilter2DAlgorithm.setRadius(double radius)
void	DivideByMaximumAlgorithm.setRecalibrate(boolean recalibrate)
void	GenerateFromMathExpression2D.setSizeC(int sizeC)
void	GenerateVectorFromMathExpression.setSizeC(int sizeC)
void	GenerateFromMathExpression2D.setSizeT(int sizeT)
void	GenerateVectorFromMathExpression.setSizeT(int sizeT)
void	GenerateFromMathExpression2D.setSizeZ(int sizeZ)
void	GenerateVectorFromMathExpression.setSizeZ(int sizeZ)
void	Hessian2DAlgorithm.setSmoothing(double smoothing)
void	ApplyMath2DAlgorithm.setTransformation(ApplyMath2DAlgorithm.Transformation transformation)
void	ApplyTransform2DAlgorithm.setTransformation(ApplyTransform2DAlgorithm.Transformation transformation)
void	ApplyVectorMathExpression2DAlgorithm.setTransformation(DefaultExpressionParameter transformation)
void	ApplyMathExpression2DAlgorithm.setTransformation(DefaultExpressionParameter transformation)
void	ApplyMath2DAlgorithm.setValue(double value)
void	GenerateFromMathExpression2D.setWidth(int width)
void	GenerateVectorFromMathExpression.setWidth(int width)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.distancemap

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.distancemap with annotations of type JIPipeParameter

Modifier and Type	Method and Description
int	ApplyDistanceTransform2DAlgorithm.getBackgroundValue()
inra.ijpb.binary.ChamferWeights3D	LabelChamferDistanceMap3DAlgorithm.getChamferWeights()
inra.ijpb.binary.ChamferWeights	ChamferDistanceMap2DAlgorithm.getChamferWeights()
inra.ijpb.binary.ChamferWeights3D	ChamferDistanceMap3DAlgorithm.getChamferWeights()
inra.ijpb.binary.ChamferWeights	GeodesicDistanceMap2DAlgorithm.getChamferWeights()
JIPipeDataInfoRef	LabelChamferDistanceMap3DAlgorithm.getOutputType()
JIPipeDataInfoRef	ChamferDistanceMap2DAlgorithm.getOutputType()
JIPipeDataInfoRef	ChamferDistanceMap3DAlgorithm.getOutputType()
JIPipeDataInfoRef	GeodesicDistanceMap2DAlgorithm.getOutputType()
boolean	ApplyDistanceTransform2DAlgorithm.isEdgesAreBackground()
boolean	LabelChamferDistanceMap3DAlgorithm.isNormalize()
boolean	ChamferDistanceMap2DAlgorithm.isNormalize()
boolean	ChamferDistanceMap3DAlgorithm.isNormalize()
boolean	GeodesicDistanceMap2DAlgorithm.isNormalize()
void	ApplyDistanceTransform2DAlgorithm.setBackgroundValue(int backgroundValue)
void	ChamferDistanceMap2DAlgorithm.setChamferWeights(inra.ijpb.binary.ChamferWeights chamferWeights)
void	GeodesicDistanceMap2DAlgorithm.setChamferWeights(inra.ijpb.binary.ChamferWeights chamferWeights)
void	LabelChamferDistanceMap3DAlgorithm.setChamferWeights(inra.ijpb.binary.ChamferWeights3D chamferWeights)
void	ChamferDistanceMap3DAlgorithm.setChamferWeights(inra.ijpb.binary.ChamferWeights3D chamferWeights)
void	ApplyDistanceTransform2DAlgorithm.setEdgesAreBackground(boolean edgesAreBackground)
void	LabelChamferDistanceMap3DAlgorithm.setNormalize(boolean normalize)
void	ChamferDistanceMap2DAlgorithm.setNormalize(boolean normalize)
void	ChamferDistanceMap3DAlgorithm.setNormalize(boolean normalize)
void	GeodesicDistanceMap2DAlgorithm.setNormalize(boolean normalize)
void	LabelChamferDistanceMap3DAlgorithm.setOutputType(JIPipeDataInfoRef outputType)
void	ChamferDistanceMap2DAlgorithm.setOutputType(JIPipeDataInfoRef outputType)
void	ChamferDistanceMap3DAlgorithm.setOutputType(JIPipeDataInfoRef outputType)
void	GeodesicDistanceMap2DAlgorithm.setOutputType(JIPipeDataInfoRef outputType)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.local

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.local with annotations of type JIPipeParameter

Modifier and Type	Method and Description
Neighborhood2D	ExtendedMinima2DAlgorithm.getConnectivity()
Neighborhood3D	ExtendedMinima3DAlgorithm.getConnectivity()
Neighborhood2D	RegionalMinima2DAlgorithm.getConnectivity()
Neighborhood3D	ExtendedMaxima3DAlgorithm.getConnectivity()
Neighborhood3D	RegionalMaxima3DAlgorithm.getConnectivity()
Neighborhood3D	RegionalMinima3DAlgorithm.getConnectivity()
Neighborhood2D	RegionalMaxima2DAlgorithm.getConnectivity()
Neighborhood2D	ExtendedMaxima2DAlgorithm.getConnectivity()
double	ExtendedMinima2DAlgorithm.getDynamic()
double	ExtendedMinima3DAlgorithm.getDynamic()
double	ExtendedMaxima3DAlgorithm.getDynamic()
double	ExtendedMaxima2DAlgorithm.getDynamic()
DefaultExpressionParameter	LocalImageCalculator2DExpression.getExpression()
int	LocalImageCalculator2DExpression.getLocalWindowHeight()
int	LocalImageCalculator2DExpression.getLocalWindowWidth()
double	LocalMinimumFilter2DAlgorithm.getRadius()
double	LocalVarianceFilter2DAlgorithm.getRadius()
double	LocalMaximumFilter2DAlgorithm.getRadius()
float	LocalMinimumFilter3DAlgorithm.getRadiusX()
float	LocalVarianceFilter3DAlgorithm.getRadiusX()
float	LocalMaximumFilter3DAlgorithm.getRadiusX()
float	LocalMinimumFilter3DAlgorithm.getRadiusY()
float	LocalVarianceFilter3DAlgorithm.getRadiusY()
float	LocalMaximumFilter3DAlgorithm.getRadiusY()
float	LocalMinimumFilter3DAlgorithm.getRadiusZ()
float	LocalVarianceFilter3DAlgorithm.getRadiusZ()
float	LocalMaximumFilter3DAlgorithm.getRadiusZ()
SourceWrapMode	LocalImageCalculator2DExpression.getSourceWrapMode()
void	ExtendedMinima2DAlgorithm.setConnectivity(Neighborhood2D connectivity)
void	RegionalMinima2DAlgorithm.setConnectivity(Neighborhood2D connectivity)
void	RegionalMaxima2DAlgorithm.setConnectivity(Neighborhood2D connectivity)
void	ExtendedMaxima2DAlgorithm.setConnectivity(Neighborhood2D connectivity)
void	ExtendedMinima3DAlgorithm.setConnectivity(Neighborhood3D connectivity)
void	ExtendedMaxima3DAlgorithm.setConnectivity(Neighborhood3D connectivity)
void	RegionalMaxima3DAlgorithm.setConnectivity(Neighborhood3D connectivity)
void	RegionalMinima3DAlgorithm.setConnectivity(Neighborhood3D connectivity)
void	ExtendedMinima2DAlgorithm.setDynamic(double dynamic)
void	ExtendedMinima3DAlgorithm.setDynamic(double dynamic)
void	ExtendedMaxima3DAlgorithm.setDynamic(double dynamic)
void	ExtendedMaxima2DAlgorithm.setDynamic(double dynamic)
void	LocalImageCalculator2DExpression.setExpression(DefaultExpressionParameter expression)
void	LocalImageCalculator2DExpression.setLocalWindowHeight(int localWindowHeight)
void	LocalImageCalculator2DExpression.setLocalWindowWidth(int localWindowWidth)
boolean	LocalMinimumFilter2DAlgorithm.setRadius(double radius)
boolean	LocalVarianceFilter2DAlgorithm.setRadius(double radius)
boolean	LocalMaximumFilter2DAlgorithm.setRadius(double radius)
void	LocalMinimumFilter3DAlgorithm.setRadiusX(float radiusX)
void	LocalVarianceFilter3DAlgorithm.setRadiusX(float radiusX)
void	LocalMaximumFilter3DAlgorithm.setRadiusX(float radiusX)
void	LocalMinimumFilter3DAlgorithm.setRadiusY(float radiusY)
void	LocalVarianceFilter3DAlgorithm.setRadiusY(float radiusY)
void	LocalMaximumFilter3DAlgorithm.setRadiusY(float radiusY)
void	LocalMinimumFilter3DAlgorithm.setRadiusZ(float radiusZ)
void	LocalVarianceFilter3DAlgorithm.setRadiusZ(float radiusZ)
void	LocalMaximumFilter3DAlgorithm.setRadiusZ(float radiusZ)
void	LocalImageCalculator2DExpression.setSourceWrapMode(SourceWrapMode sourceWrapMode)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc with annotations of type JIPipeParameter

Modifier and Type	Method and Description
int	DataToPreviewAlgorithm.getPreviewHeight()
int	DataToPreviewAlgorithm.getPreviewWidth()
RenderPipelineRunSettings	RenderJIPipeProjectAlgorithm.getSettings()
void	DataToPreviewAlgorithm.setPreviewHeight(int previewHeight)
void	DataToPreviewAlgorithm.setPreviewWidth(int previewWidth)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology with annotations of type JIPipeParameter

Modifier and Type	Method and Description
AddBorder2DAlgorithm	Morphology2DAlgorithm.getAddBorder2DAlgorithm()
GrayscaleAttributeFiltering2DAlgorithm.Attribute	GrayscaleAttributeFiltering2DAlgorithm.getAttribute()
GrayscaleAttributeFiltering3DAlgorithm.Attribute	GrayscaleAttributeFiltering3DAlgorithm.getAttribute()
Neighborhood2D	MorphologicalReconstruction3DAlgorithm.getConnectivity()
Neighborhood2D	MorphologicalReconstruction2DAlgorithm.getConnectivity()
Neighborhood2D	GrayscaleAttributeFiltering2DAlgorithm.getConnectivity()
Neighborhood3D	GrayscaleAttributeFiltering3DAlgorithm.getConnectivity()
inra.ijpb.morphology.Strel3D.Shape	Morphology3DAlgorithm.getElement()
inra.ijpb.morphology.Strel.Shape	Morphology2DAlgorithm.getElement()
int	MorphologyBinary2DAlgorithm.getIterations()
int	GrayscaleAttributeFiltering2DAlgorithm.getMinimumValue()
int	GrayscaleAttributeFiltering3DAlgorithm.getMinVoxelNumber()
inra.ijpb.morphology.Morphology.Operation	Morphology3DAlgorithm.getOperation()
MorphologyBinary2DAlgorithm.Operation	MorphologyBinary2DAlgorithm.getOperation()
GrayscaleAttributeFiltering2DAlgorithm.Operation	GrayscaleAttributeFiltering2DAlgorithm.getOperation()
inra.ijpb.morphology.Morphology.Operation	Morphology2DAlgorithm.getOperation()
GrayscaleAttributeFiltering3DAlgorithm.Operation	GrayscaleAttributeFiltering3DAlgorithm.getOperation()
int	Morphology3DAlgorithm.getRadius()
double	MorphologyInternalGradient2DAlgorithm.getRadius()
int	Morphology2DAlgorithm.getRadius()
boolean	Morphology2DAlgorithm.isAddBorder()
boolean	MorphologicalReconstruction3DAlgorithm.isApplyDilation()
boolean	MorphologicalReconstruction2DAlgorithm.isApplyDilation()
boolean	FindHoles2DAlgorithm.isBlackBackground()
boolean	MorphologyFillHoles2DAlgorithm.isBlackBackground()
boolean	MorphologySkeletonize2DAlgorithm.isDarkBackground()
void	Morphology2DAlgorithm.setAddBorder(boolean addBorder)
void	MorphologicalReconstruction3DAlgorithm.setApplyDilation(boolean applyDilation)
void	MorphologicalReconstruction2DAlgorithm.setApplyDilation(boolean applyDilation)
void	GrayscaleAttributeFiltering2DAlgorithm.setAttribute(GrayscaleAttributeFiltering2DAlgorithm.Attribute attribute)
void	GrayscaleAttributeFiltering3DAlgorithm.setAttribute(GrayscaleAttributeFiltering3DAlgorithm.Attribute attribute)
void	FindHoles2DAlgorithm.setBlackBackground(boolean blackBackground)
void	MorphologyFillHoles2DAlgorithm.setBlackBackground(boolean blackBackground)
void	MorphologicalReconstruction3DAlgorithm.setConnectivity(Neighborhood2D connectivity)
void	MorphologicalReconstruction2DAlgorithm.setConnectivity(Neighborhood2D connectivity)
void	GrayscaleAttributeFiltering2DAlgorithm.setConnectivity(Neighborhood2D connectivity)
void	GrayscaleAttributeFiltering3DAlgorithm.setConnectivity(Neighborhood3D connectivity)
void	MorphologySkeletonize2DAlgorithm.setDarkBackground(boolean darkBackground)
void	Morphology2DAlgorithm.setElement(inra.ijpb.morphology.Strel.Shape element)
void	Morphology3DAlgorithm.setElement(inra.ijpb.morphology.Strel3D.Shape element)
void	MorphologyBinary2DAlgorithm.setIterations(int iterations)
void	GrayscaleAttributeFiltering2DAlgorithm.setMinimumValue(int minimumValue)
void	GrayscaleAttributeFiltering3DAlgorithm.setMinVoxelNumber(int minVoxelNumber)
void	GrayscaleAttributeFiltering2DAlgorithm.setOperation(GrayscaleAttributeFiltering2DAlgorithm.Operation operation)
void	GrayscaleAttributeFiltering3DAlgorithm.setOperation(GrayscaleAttributeFiltering3DAlgorithm.Operation operation)
void	Morphology3DAlgorithm.setOperation(inra.ijpb.morphology.Morphology.Operation operation)
void	Morphology2DAlgorithm.setOperation(inra.ijpb.morphology.Morphology.Operation operation)
void	MorphologyBinary2DAlgorithm.setOperation(MorphologyBinary2DAlgorithm.Operation operation)
void	MorphologyInternalGradient2DAlgorithm.setRadius(double radius)
void	Morphology3DAlgorithm.setRadius(int radius)
void	Morphology2DAlgorithm.setRadius(int radius)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise with annotations of type JIPipeParameter

Modifier and Type	Method and Description
RemoveOutliersFilter2DAlgorithm.Mode	RemoveOutliersFilter2DAlgorithm.getMode()
double	AddSaltAndPepperNoise2DAlgorithm.getPercent()
double	RemoveOutliersFilter2DAlgorithm.getRadius()
double	AddNoise2DAlgorithm.getSigma()
float	RemoveOutliersFilter2DAlgorithm.getThreshold()
void	RemoveOutliersFilter2DAlgorithm.setMode(RemoveOutliersFilter2DAlgorithm.Mode mode)
void	AddSaltAndPepperNoise2DAlgorithm.setPercent(double percent)
boolean	RemoveOutliersFilter2DAlgorithm.setRadius(double radius)
void	AddNoise2DAlgorithm.setSigma(double sigma)
boolean	RemoveOutliersFilter2DAlgorithm.setThreshold(float threshold)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.opticalflow

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.opticalflow with annotations of type JIPipeParameter

Modifier and Type	Method and Description
int	PMCCBlockFlowAlgorithm.getBlockRadius()
int	MSEBlockFlowAlgorithm.getBlockRadius()
int	MSEGaussianFlowAlgorithm.getMaxDistance()
int	PMCCBlockFlowAlgorithm.getMaxDistance()
int	MSEBlockFlowAlgorithm.getMaxDistance()
int	MSEGaussianFlowAlgorithm.getSigma()
boolean	MSEGaussianFlowAlgorithm.isAddLastIdentityField()
boolean	PMCCBlockFlowAlgorithm.isAddLastIdentityField()
boolean	MSEBlockFlowAlgorithm.isAddLastIdentityField()
boolean	MSEGaussianFlowAlgorithm.isOutputPolarCoordinates()
boolean	PMCCBlockFlowAlgorithm.isOutputPolarCoordinates()
boolean	MSEBlockFlowAlgorithm.isOutputPolarCoordinates()
boolean	MSEGaussianFlowAlgorithm.isRelativeDistances()
boolean	PMCCBlockFlowAlgorithm.isRelativeDistances()
boolean	MSEBlockFlowAlgorithm.isRelativeDistances()
void	MSEGaussianFlowAlgorithm.setAddLastIdentityField(boolean addLastIdentityField)
void	PMCCBlockFlowAlgorithm.setAddLastIdentityField(boolean addLastIdentityField)
void	MSEBlockFlowAlgorithm.setAddLastIdentityField(boolean addLastIdentityField)
boolean	MSEGaussianFlowAlgorithm.setBlockRadius(int blockRadius)
boolean	PMCCBlockFlowAlgorithm.setBlockRadius(int blockRadius)
boolean	MSEBlockFlowAlgorithm.setBlockRadius(int blockRadius)
boolean	MSEGaussianFlowAlgorithm.setMaxDistance(int maxDistance)
boolean	PMCCBlockFlowAlgorithm.setMaxDistance(int maxDistance)
boolean	MSEBlockFlowAlgorithm.setMaxDistance(int maxDistance)
void	MSEGaussianFlowAlgorithm.setOutputPolarCoordinates(boolean outputPolarCoordinates)
void	PMCCBlockFlowAlgorithm.setOutputPolarCoordinates(boolean outputPolarCoordinates)
void	MSEBlockFlowAlgorithm.setOutputPolarCoordinates(boolean outputPolarCoordinates)
void	MSEGaussianFlowAlgorithm.setRelativeDistances(boolean relativeDistances)
void	PMCCBlockFlowAlgorithm.setRelativeDistances(boolean relativeDistances)
void	MSEBlockFlowAlgorithm.setRelativeDistances(boolean relativeDistances)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.overlay

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.overlay with annotations of type JIPipeParameter

Modifier and Type	Method and Description
ROIElementDrawingMode	RenderOverlayAlgorithm.getDrawFilledOutlineMode()
RoiLabel	RenderOverlayAlgorithm.getDrawnLabel()
ROIElementDrawingMode	RenderOverlayAlgorithm.getDrawOutlineMode()
OptionalColorParameter	RenderOverlayAlgorithm.getLabelBackground()
Color	RenderOverlayAlgorithm.getLabelForeground()
int	RenderOverlayAlgorithm.getLabelSize()
double	RenderOverlayAlgorithm.getMagnification()
double	RenderOverlayAlgorithm.getOpacity()
OptionalColorParameter	RenderOverlayAlgorithm.getOverrideFillColor()
OptionalColorParameter	RenderOverlayAlgorithm.getOverrideLineColor()
OptionalDoubleParameter	RenderOverlayAlgorithm.getOverrideLineWidth()
boolean	RenderOverlayAlgorithm.isIgnoreC()
boolean	RenderOverlayAlgorithm.isIgnoreT()
boolean	RenderOverlayAlgorithm.isIgnoreZ()
boolean	RenderOverlayAlgorithm.isPreferRenderViaOverlay()
void	RenderOverlayAlgorithm.setDrawFilledOutlineMode(ROIElementDrawingMode drawFilledOutlineMode)
void	RenderOverlayAlgorithm.setDrawnLabel(RoiLabel drawnLabel)
void	RenderOverlayAlgorithm.setDrawOutlineMode(ROIElementDrawingMode drawOutlineMode)
void	RenderOverlayAlgorithm.setIgnoreC(boolean ignoreC)
void	RenderOverlayAlgorithm.setIgnoreT(boolean ignoreT)
void	RenderOverlayAlgorithm.setIgnoreZ(boolean ignoreZ)
void	RenderOverlayAlgorithm.setLabelBackground(OptionalColorParameter labelBackground)
void	RenderOverlayAlgorithm.setLabelForeground(Color labelForeground)
boolean	RenderOverlayAlgorithm.setLabelSize(int labelSize)
void	RenderOverlayAlgorithm.setMagnification(double magnification)
boolean	RenderOverlayAlgorithm.setOpacity(double opacity)
void	RenderOverlayAlgorithm.setOverrideFillColor(OptionalColorParameter overrideFillColor)
void	RenderOverlayAlgorithm.setOverrideLineColor(OptionalColorParameter overrideLineColor)
void	RenderOverlayAlgorithm.setOverrideLineWidth(OptionalDoubleParameter overrideLineWidth)
void	RenderOverlayAlgorithm.setPreferRenderViaOverlay(boolean preferRenderViaOverlay)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalAnnotationNameParameter	ExtractImageInRoiAlgorithm.getAnnotationCLocation()
OptionalAnnotationNameParameter	ExtractImageInRoiAlgorithm.getAnnotationTLocation()
OptionalAnnotationNameParameter	ExtractImageInRoiAlgorithm.getAnnotationXLocation()
OptionalAnnotationNameParameter	ExtractImageInRoiAlgorithm.getAnnotationYLocation()
OptionalAnnotationNameParameter	ExtractImageInRoiAlgorithm.getAnnotationZLocation()
OptionalAnnotationNameParameter	SplitRoiConnectedComponentsAlgorithm.getComponentNameAnnotation()
SplitRoiConnectedComponentsAlgorithm.DimensionOperation	SplitRoiConnectedComponentsAlgorithm.getDimensionCOperation()
SplitRoiConnectedComponentsAlgorithm.DimensionOperation	SplitRoiConnectedComponentsAlgorithm.getDimensionTOperation()
SplitRoiConnectedComponentsAlgorithm.DimensionOperation	SplitRoiConnectedComponentsAlgorithm.getDimensionZOperation()
DefaultExpressionParameter	SplitRoiConnectedComponentsAlgorithm.getGraphPostprocessing()
LogicalOperation	RoiCalculatorAlgorithm.getOperation()
DefaultExpressionParameter	SplitRoiConnectedComponentsAlgorithm.getOverlapFilter()
ImageStatisticsSetParameter	SplitRoiConnectedComponentsAlgorithm.getOverlapFilterMeasurements()
boolean	RoiCalculatorAlgorithm.isApplyPerChannel()
boolean	RoiCalculatorAlgorithm.isApplyPerFrame()
boolean	RoiCalculatorAlgorithm.isApplyPerSlice()
boolean	CropToRoiAlgorithm.isCropC()
boolean	CropToRoiAlgorithm.isCropT()
boolean	CropToRoiAlgorithm.isCropXY()
boolean	CropToRoiAlgorithm.isCropZ()
boolean	ExtractImageInRoiAlgorithm.isIgnoreC()
boolean	ExtractImageInRoiAlgorithm.isIgnoreT()
boolean	ExtractImageInRoiAlgorithm.isIgnoreZ()
boolean	SplitRoiConnectedComponentsAlgorithm.isMeasureInPhysicalUnits()
boolean	RoiCalculatorAlgorithm.isSplitAfterwards()
boolean	SplitRoiConnectedComponentsAlgorithm.isSplitAtJunctions()
boolean	SplitRoiConnectedComponentsAlgorithm.isTrySolveJunctions()
void	ExtractImageInRoiAlgorithm.setAnnotationCLocation(OptionalAnnotationNameParameter annotationCLocation)
void	ExtractImageInRoiAlgorithm.setAnnotationTLocation(OptionalAnnotationNameParameter annotationTLocation)
void	ExtractImageInRoiAlgorithm.setAnnotationXLocation(OptionalAnnotationNameParameter annotationXLocation)
void	ExtractImageInRoiAlgorithm.setAnnotationYLocation(OptionalAnnotationNameParameter annotationYLocation)
void	ExtractImageInRoiAlgorithm.setAnnotationZLocation(OptionalAnnotationNameParameter annotationZLocation)
void	RoiCalculatorAlgorithm.setApplyPerChannel(boolean applyPerChannel)
void	RoiCalculatorAlgorithm.setApplyPerFrame(boolean applyPerFrame)
void	RoiCalculatorAlgorithm.setApplyPerSlice(boolean applyPerSlice)
void	SplitRoiConnectedComponentsAlgorithm.setComponentNameAnnotation(OptionalAnnotationNameParameter componentNameAnnotation)
void	CropToRoiAlgorithm.setCropC(boolean cropC)
void	CropToRoiAlgorithm.setCropT(boolean cropT)
void	CropToRoiAlgorithm.setCropXY(boolean cropXY)
void	CropToRoiAlgorithm.setCropZ(boolean cropZ)
void	SplitRoiConnectedComponentsAlgorithm.setDimensionCOperation(SplitRoiConnectedComponentsAlgorithm.DimensionOperation dimensionCOperation)
void	SplitRoiConnectedComponentsAlgorithm.setDimensionTOperation(SplitRoiConnectedComponentsAlgorithm.DimensionOperation dimensionTOperation)
void	SplitRoiConnectedComponentsAlgorithm.setDimensionZOperation(SplitRoiConnectedComponentsAlgorithm.DimensionOperation dimensionZOperation)
void	SplitRoiConnectedComponentsAlgorithm.setGraphPostprocessing(DefaultExpressionParameter graphPostprocessing)
void	ExtractImageInRoiAlgorithm.setIgnoreC(boolean ignoreC)
void	ExtractImageInRoiAlgorithm.setIgnoreT(boolean ignoreT)
void	ExtractImageInRoiAlgorithm.setIgnoreZ(boolean ignoreZ)
void	SplitRoiConnectedComponentsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	RoiCalculatorAlgorithm.setOperation(LogicalOperation operation)
void	SplitRoiConnectedComponentsAlgorithm.setOverlapFilter(DefaultExpressionParameter overlapFilter)
void	SplitRoiConnectedComponentsAlgorithm.setOverlapFilterMeasurements(ImageStatisticsSetParameter overlapFilterMeasurements)
void	RoiCalculatorAlgorithm.setSplitAfterwards(boolean splitAfterwards)
void	SplitRoiConnectedComponentsAlgorithm.setSplitAtJunctions(boolean splitAtJunctions)
void	SplitRoiConnectedComponentsAlgorithm.setTrySolveJunctions(boolean trySolveJunctions)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.annotations

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.annotations with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeTextAnnotationMergeMode	RoiPropertiesToAnnotationsAlgorithm.getAnnotationMergeStrategy()
OptionalAnnotationNameParameter	RoiPropertiesToAnnotationsAlgorithm.getCountAnnotation()
OptionalAnnotationNameParameter	RoiPropertiesToAnnotationsAlgorithm.getFillColorAnnotation()
OptionalAnnotationNameParameter	RoiPropertiesToAnnotationsAlgorithm.getLineColorAnnotation()
OptionalAnnotationNameParameter	RoiPropertiesToAnnotationsAlgorithm.getLineWidthAnnotation()
OptionalAnnotationNameParameter	RoiPropertiesToAnnotationsAlgorithm.getLocationCAnnotation()
OptionalAnnotationNameParameter	RoiPropertiesToAnnotationsAlgorithm.getLocationTAnnotation()
OptionalAnnotationNameParameter	RoiPropertiesToAnnotationsAlgorithm.getLocationXAnnotation()
OptionalAnnotationNameParameter	RoiPropertiesToAnnotationsAlgorithm.getLocationYAnnotation()
OptionalAnnotationNameParameter	RoiPropertiesToAnnotationsAlgorithm.getLocationZAnnotation()
OptionalAnnotationNameParameter	RoiPropertiesToAnnotationsAlgorithm.getNameAnnotation()
boolean	RoiPropertiesToAnnotationsAlgorithm.isDeduplicate()
boolean	RoiPropertiesToAnnotationsAlgorithm.isOnlyFirst()
void	RoiPropertiesToAnnotationsAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	RoiPropertiesToAnnotationsAlgorithm.setCountAnnotation(OptionalAnnotationNameParameter countAnnotation)
void	RoiPropertiesToAnnotationsAlgorithm.setDeduplicate(boolean deduplicate)
void	RoiPropertiesToAnnotationsAlgorithm.setFillColorAnnotation(OptionalAnnotationNameParameter fillColorAnnotation)
void	RoiPropertiesToAnnotationsAlgorithm.setLineColorAnnotation(OptionalAnnotationNameParameter lineColorAnnotation)
void	RoiPropertiesToAnnotationsAlgorithm.setLineWidthAnnotation(OptionalAnnotationNameParameter lineWidthAnnotation)
void	RoiPropertiesToAnnotationsAlgorithm.setLocationCAnnotation(OptionalAnnotationNameParameter locationCAnnotation)
void	RoiPropertiesToAnnotationsAlgorithm.setLocationTAnnotation(OptionalAnnotationNameParameter locationTAnnotation)
void	RoiPropertiesToAnnotationsAlgorithm.setLocationXAnnotation(OptionalAnnotationNameParameter locationXAnnotation)
void	RoiPropertiesToAnnotationsAlgorithm.setLocationYAnnotation(OptionalAnnotationNameParameter locationYAnnotation)
void	RoiPropertiesToAnnotationsAlgorithm.setLocationZAnnotation(OptionalAnnotationNameParameter locationZAnnotation)
void	RoiPropertiesToAnnotationsAlgorithm.setNameAnnotation(OptionalAnnotationNameParameter nameAnnotation)
void	RoiPropertiesToAnnotationsAlgorithm.setOnlyFirst(boolean onlyFirst)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.assemble

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.assemble with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalAnnotationNameParameter	ExtractFromROIAlgorithm.getAnnotationBoundingHeight()
OptionalAnnotationNameParameter	ExtractFromROIAlgorithm.getAnnotationBoundingWidth()
OptionalStringParameter	AssembleExtractedROIAlgorithm.getAnnotationC()
OptionalAnnotationNameParameter	ExtractFromROIAlgorithm.getAnnotationC()
JIPipeTextAnnotationMergeMode	ExtractFromROIAlgorithm.getAnnotationMergeStrategy()
OptionalStringParameter	AssembleExtractedROIAlgorithm.getAnnotationT()
OptionalAnnotationNameParameter	ExtractFromROIAlgorithm.getAnnotationT()
String	AssembleExtractedROIAlgorithm.getAnnotationX()
OptionalAnnotationNameParameter	ExtractFromROIAlgorithm.getAnnotationX()
String	AssembleExtractedROIAlgorithm.getAnnotationY()
OptionalAnnotationNameParameter	ExtractFromROIAlgorithm.getAnnotationY()
OptionalStringParameter	AssembleExtractedROIAlgorithm.getAnnotationZ()
OptionalAnnotationNameParameter	ExtractFromROIAlgorithm.getAnnotationZ()
OptionalColorParameter	ExtractFromROIAlgorithm.getOutsideColor()
Anchor	AssembleExtractedROIAlgorithm.getXyAnchor()
Anchor	ExtractFromROIAlgorithm.getXyAnchor()
boolean	AssembleExtractedROIAlgorithm.isDoScaling()
void	ExtractFromROIAlgorithm.setAnnotationBoundingHeight(OptionalAnnotationNameParameter annotationBoundingHeight)
void	ExtractFromROIAlgorithm.setAnnotationBoundingWidth(OptionalAnnotationNameParameter annotationBoundingWidth)
void	ExtractFromROIAlgorithm.setAnnotationC(OptionalAnnotationNameParameter annotationC)
void	AssembleExtractedROIAlgorithm.setAnnotationC(OptionalStringParameter annotationC)
void	ExtractFromROIAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	ExtractFromROIAlgorithm.setAnnotationT(OptionalAnnotationNameParameter annotationT)
void	AssembleExtractedROIAlgorithm.setAnnotationT(OptionalStringParameter annotationT)
void	ExtractFromROIAlgorithm.setAnnotationX(OptionalAnnotationNameParameter annotationX)
void	AssembleExtractedROIAlgorithm.setAnnotationX(String annotationX)
void	ExtractFromROIAlgorithm.setAnnotationY(OptionalAnnotationNameParameter annotationY)
void	AssembleExtractedROIAlgorithm.setAnnotationY(String annotationY)
void	ExtractFromROIAlgorithm.setAnnotationZ(OptionalAnnotationNameParameter annotationZ)
void	AssembleExtractedROIAlgorithm.setAnnotationZ(OptionalStringParameter annotationZ)
void	AssembleExtractedROIAlgorithm.setDoScaling(boolean doScaling)
void	ExtractFromROIAlgorithm.setOutsideColor(OptionalColorParameter outsideColor)
void	AssembleExtractedROIAlgorithm.setXyAnchor(Anchor xyAnchor)
void	ExtractFromROIAlgorithm.setXyAnchor(Anchor xyAnchor)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.convert

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.convert with annotations of type JIPipeParameter

Modifier and Type	Method and Description
ROIElementDrawingMode	RoiToRGBAlgorithm.getDrawFilledOutlineMode()
ROIElementDrawingMode	UnreferencedRoiToRGBAlgorithm.getDrawFilledOutlineMode()
RoiLabel	RoiToRGBAlgorithm.getDrawnLabel()
ROIElementDrawingMode	RoiToRGBAlgorithm.getDrawOutlineMode()
ROIElementDrawingMode	UnreferencedRoiToRGBAlgorithm.getDrawOutlineMode()
Margin	UnreferencedRoiToRGBAlgorithm.getImageArea()
Margin	UnreferencedRoiToMaskAlgorithm.getImageArea()
int	ROIToLabelsByNameAlgorithm.ROINameToLabelEntry.getLabel()
ParameterCollectionList	ROIToLabelsByNameAlgorithm.getLabelAssignment()
OptionalColorParameter	RoiToRGBAlgorithm.getLabelBackground()
FontFamilyParameter	RoiToRGBAlgorithm.getLabelFontFamily()
Color	RoiToRGBAlgorithm.getLabelForeground()
int	RoiToRGBAlgorithm.getLabelSize()
int	RoiToMaskAlgorithm.getLineThickness()
int	UnreferencedRoiToMaskAlgorithm.getLineThickness()
double	RoiToRGBAlgorithm.getMagnification()
String	ROIToLabelsByNameAlgorithm.ROINameToLabelEntry.getName()
double	RoiToRGBAlgorithm.getOpacity()
OptionalColorParameter	RoiToRGBAlgorithm.getOverrideFillColor()
OptionalColorParameter	UnreferencedRoiToRGBAlgorithm.getOverrideFillColor()
OptionalColorParameter	RoiToRGBAlgorithm.getOverrideLineColor()
OptionalColorParameter	UnreferencedRoiToRGBAlgorithm.getOverrideLineColor()
OptionalDoubleParameter	RoiToRGBAlgorithm.getOverrideLineWidth()
OptionalDoubleParameter	UnreferencedRoiToRGBAlgorithm.getOverrideLineWidth()
OptionalDefaultExpressionParameter	ROIToLabelsExpressionAlgorithm.getRoiToLabelTransformation()
boolean	RoiToMaskAlgorithm.isDrawFilledOutline()
boolean	UnreferencedRoiToMaskAlgorithm.isDrawFilledOutline()
boolean	UnreferencedRoiToRGBAlgorithm.isDrawLabel()
boolean	RoiToMaskAlgorithm.isDrawOutline()
boolean	ROIToLabelsExpressionAlgorithm.isDrawOutline()
boolean	ROIToLabelsByNameAlgorithm.isDrawOutline()
boolean	UnreferencedRoiToMaskAlgorithm.isDrawOutline()
boolean	RoiToRGBAlgorithm.isDrawOver()
boolean	UnreferencedRoiToRGBAlgorithm.isDrawOver()
boolean	RoiToMaskAlgorithm.isDrawOver()
boolean	ROIToLabelsExpressionAlgorithm.isFillOutline()
boolean	ROIToLabelsByNameAlgorithm.isFillOutline()
boolean	RoiToRGBAlgorithm.isIgnoreC()
boolean	UnreferencedRoiToRGBAlgorithm.isIgnoreC()
boolean	RoiToRGBAlgorithm.isIgnoreT()
boolean	UnreferencedRoiToRGBAlgorithm.isIgnoreT()
boolean	RoiToRGBAlgorithm.isIgnoreZ()
boolean	UnreferencedRoiToRGBAlgorithm.isIgnoreZ()
boolean	UnreferencedRoiToRGBAlgorithm.isPreferAssociatedImage()
boolean	UnreferencedRoiToMaskAlgorithm.isPreferAssociatedImage()
boolean	RoiToRGBAlgorithm.isPreferRenderViaOverlay()
void	RoiToMaskAlgorithm.setDrawFilledOutline(boolean drawFilledOutline)
void	UnreferencedRoiToMaskAlgorithm.setDrawFilledOutline(boolean drawFilledOutline)
void	RoiToRGBAlgorithm.setDrawFilledOutlineMode(ROIElementDrawingMode drawFilledOutlineMode)
void	UnreferencedRoiToRGBAlgorithm.setDrawFilledOutlineMode(ROIElementDrawingMode drawFilledOutlineMode)
void	UnreferencedRoiToRGBAlgorithm.setDrawLabel(boolean drawLabel)
void	RoiToRGBAlgorithm.setDrawnLabel(RoiLabel drawnLabel)
void	RoiToMaskAlgorithm.setDrawOutline(boolean drawOutline)
void	ROIToLabelsExpressionAlgorithm.setDrawOutline(boolean drawOutline)
void	ROIToLabelsByNameAlgorithm.setDrawOutline(boolean drawOutline)
void	UnreferencedRoiToMaskAlgorithm.setDrawOutline(boolean drawOutline)
void	RoiToRGBAlgorithm.setDrawOutlineMode(ROIElementDrawingMode drawOutlineMode)
void	UnreferencedRoiToRGBAlgorithm.setDrawOutlineMode(ROIElementDrawingMode drawOutlineMode)
void	RoiToRGBAlgorithm.setDrawOver(boolean drawOver)
void	UnreferencedRoiToRGBAlgorithm.setDrawOver(boolean drawOver)
void	RoiToMaskAlgorithm.setDrawOver(boolean drawOver)
void	ROIToLabelsExpressionAlgorithm.setFillOutline(boolean fillOutline)
void	ROIToLabelsByNameAlgorithm.setFillOutline(boolean fillOutline)
void	RoiToRGBAlgorithm.setIgnoreC(boolean ignoreC)
void	UnreferencedRoiToRGBAlgorithm.setIgnoreC(boolean ignoreC)
void	RoiToRGBAlgorithm.setIgnoreT(boolean ignoreT)
void	UnreferencedRoiToRGBAlgorithm.setIgnoreT(boolean ignoreT)
void	RoiToRGBAlgorithm.setIgnoreZ(boolean ignoreZ)
void	UnreferencedRoiToRGBAlgorithm.setIgnoreZ(boolean ignoreZ)
void	UnreferencedRoiToRGBAlgorithm.setImageArea(Margin imageArea)
void	UnreferencedRoiToMaskAlgorithm.setImageArea(Margin imageArea)
void	ROIToLabelsByNameAlgorithm.ROINameToLabelEntry.setLabel(int label)
void	ROIToLabelsByNameAlgorithm.setLabelAssignment(ParameterCollectionList labelAssignment)
void	RoiToRGBAlgorithm.setLabelBackground(OptionalColorParameter labelBackground)
void	RoiToRGBAlgorithm.setLabelFontFamily(FontFamilyParameter labelFontFamily)
void	RoiToRGBAlgorithm.setLabelForeground(Color labelForeground)
boolean	RoiToRGBAlgorithm.setLabelSize(int labelSize)
void	RoiToMaskAlgorithm.setLineThickness(int lineThickness)
void	UnreferencedRoiToMaskAlgorithm.setLineThickness(int lineThickness)
void	RoiToRGBAlgorithm.setMagnification(double magnification)
void	ROIToLabelsByNameAlgorithm.ROINameToLabelEntry.setName(String name)
boolean	RoiToRGBAlgorithm.setOpacity(double opacity)
void	RoiToRGBAlgorithm.setOverrideFillColor(OptionalColorParameter overrideFillColor)
void	UnreferencedRoiToRGBAlgorithm.setOverrideFillColor(OptionalColorParameter overrideFillColor)
void	RoiToRGBAlgorithm.setOverrideLineColor(OptionalColorParameter overrideLineColor)
void	UnreferencedRoiToRGBAlgorithm.setOverrideLineColor(OptionalColorParameter overrideLineColor)
void	RoiToRGBAlgorithm.setOverrideLineWidth(OptionalDoubleParameter overrideLineWidth)
void	UnreferencedRoiToRGBAlgorithm.setOverrideLineWidth(OptionalDoubleParameter overrideLineWidth)
void	UnreferencedRoiToRGBAlgorithm.setPreferAssociatedImage(boolean preferAssociatedImage)
void	UnreferencedRoiToMaskAlgorithm.setPreferAssociatedImage(boolean preferAssociatedImage)
void	RoiToRGBAlgorithm.setPreferRenderViaOverlay(boolean preferRenderViaOverlay)
void	ROIToLabelsExpressionAlgorithm.setRoiToLabelTransformation(OptionalDefaultExpressionParameter roiToLabelTransformation)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.draw

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.draw with annotations of type JIPipeParameter

Modifier and Type	Method and Description
double	DrawTextRoiAlgorithm.getAngle()
int	DrawRectangleRoiAlgorithm.getArcHeight()
int	DrawRectangleRoiAlgorithm.getArcWidth()
OptionalColorParameter	DrawScaleBarRoiAlgorithm.getBackgroundColor()
Color	DrawScaleBarRoiAlgorithm.getBarColor()
int	DrawScaleBarRoiAlgorithm.getBarThickness()
OptionalColorParameter	ROIProperties.getFillColor()
FontFamilyParameter	DrawScaleBarRoiAlgorithm.TextSettings.getFontFamily()
FontFamilyParameter	DrawTextRoiAlgorithm.getFontFamily()
int	DrawScaleBarRoiAlgorithm.TextSettings.getFontSize()
int	DrawTextRoiAlgorithm.getFontSize()
FontStyleParameter	DrawScaleBarRoiAlgorithm.TextSettings.getFontStyle()
FontStyleParameter	DrawTextRoiAlgorithm.getFontStyle()
OptionalQuantity	DrawScaleBarRoiAlgorithm.getHorizontalBarSize()
DefaultExpressionParameter	DrawScaleBarRoiAlgorithm.TextSettings.getHorizontalLabel()
OptionalColorParameter	ROIProperties.getLineColor()
double	ROIProperties.getLineWidth()
ScaleBarGenerator.ScaleBarPosition	DrawScaleBarRoiAlgorithm.getLocation()
FixedMargin	DrawTextRoiAlgorithm.getLocation()
int	ROIProperties.getPositionC()
int	ROIProperties.getPositionT()
int	ROIProperties.getPositionZ()
Margin.List	DrawRectangleRoiAlgorithm.getRectangles()
Margin.List	DrawOvalRoiAlgorithm.getRectangles()
DefaultExpressionParameter	ROIProperties.getRoiName()
ROIProperties	DrawRectangleRoiAlgorithm.getRoiProperties()
ROIProperties	DrawOvalRoiAlgorithm.getRoiProperties()
ROIProperties	DrawTextRoiAlgorithm.getRoiProperties()
DefaultExpressionParameter	DrawTextRoiAlgorithm.getText()
Color	DrawScaleBarRoiAlgorithm.TextSettings.getTextColor()
DrawScaleBarRoiAlgorithm.TextSettings	DrawScaleBarRoiAlgorithm.getTextSettings()
OptionalQuantity	DrawScaleBarRoiAlgorithm.getVerticalBarSize()
DefaultExpressionParameter	DrawScaleBarRoiAlgorithm.TextSettings.getVerticalLabel()
boolean	DrawTextRoiAlgorithm.isAntialiased()
boolean	DrawRectangleRoiAlgorithm.isCenter()
boolean	DrawOvalRoiAlgorithm.isCenter()
boolean	DrawTextRoiAlgorithm.isCenter()
boolean	DrawScaleBarRoiAlgorithm.isDrawHorizontal()
boolean	DrawScaleBarRoiAlgorithm.isDrawVertical()
boolean	DrawScaleBarRoiAlgorithm.TextSettings.isHideLabels()
void	DrawTextRoiAlgorithm.setAngle(double angle)
void	DrawTextRoiAlgorithm.setAntialiased(boolean antialiased)
void	DrawRectangleRoiAlgorithm.setArcHeight(int arcHeight)
void	DrawRectangleRoiAlgorithm.setArcWidth(int arcWidth)
void	DrawScaleBarRoiAlgorithm.setBackgroundColor(OptionalColorParameter backgroundColor)
void	DrawScaleBarRoiAlgorithm.setBarColor(Color barColor)
void	DrawScaleBarRoiAlgorithm.setBarThickness(int barThickness)
void	DrawRectangleRoiAlgorithm.setCenter(boolean center)
void	DrawOvalRoiAlgorithm.setCenter(boolean center)
void	DrawTextRoiAlgorithm.setCenter(boolean center)
void	DrawScaleBarRoiAlgorithm.setDrawHorizontal(boolean drawHorizontal)
void	DrawScaleBarRoiAlgorithm.setDrawVertical(boolean drawVertical)
void	ROIProperties.setFillColor(OptionalColorParameter fillColor)
void	DrawScaleBarRoiAlgorithm.TextSettings.setFontFamily(FontFamilyParameter fontFamily)
void	DrawTextRoiAlgorithm.setFontFamily(FontFamilyParameter fontFamily)
void	DrawScaleBarRoiAlgorithm.TextSettings.setFontSize(int fontSize)
void	DrawTextRoiAlgorithm.setFontSize(int fontSize)
void	DrawScaleBarRoiAlgorithm.TextSettings.setFontStyle(FontStyleParameter fontStyle)
void	DrawTextRoiAlgorithm.setFontStyle(FontStyleParameter fontStyle)
void	DrawScaleBarRoiAlgorithm.TextSettings.setHideLabels(boolean hideLabels)
void	DrawScaleBarRoiAlgorithm.setHorizontalBarSize(OptionalQuantity horizontalBarSize)
void	DrawScaleBarRoiAlgorithm.TextSettings.setHorizontalLabel(DefaultExpressionParameter horizontalLabel)
void	ROIProperties.setLineColor(OptionalColorParameter lineColor)
void	ROIProperties.setLineWidth(double lineWidth)
void	DrawTextRoiAlgorithm.setLocation(FixedMargin location)
void	DrawScaleBarRoiAlgorithm.setLocation(ScaleBarGenerator.ScaleBarPosition location)
void	ROIProperties.setPositionC(int positionC)
void	ROIProperties.setPositionT(int positionT)
void	ROIProperties.setPositionZ(int positionZ)
void	DrawRectangleRoiAlgorithm.setRectangles(Margin.List rectangles)
void	DrawOvalRoiAlgorithm.setRectangles(Margin.List rectangles)
void	ROIProperties.setRoiName(DefaultExpressionParameter roiName)
void	DrawTextRoiAlgorithm.setText(DefaultExpressionParameter text)
void	DrawScaleBarRoiAlgorithm.TextSettings.setTextColor(Color textColor)
void	DrawScaleBarRoiAlgorithm.setVerticalBarSize(OptionalQuantity verticalBarSize)
void	DrawScaleBarRoiAlgorithm.TextSettings.setVerticalLabel(DefaultExpressionParameter verticalLabel)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.filter

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.filter with annotations of type JIPipeParameter

Modifier and Type	Method and Description
Margin	RemoveBorderRoisAlgorithm.getBorderDefinition()
PythonScript	FilterRoiByStatisticsScriptAlgorithm.getCode()
CustomExpressionVariablesParameter	FilterRoiByStatisticsAlgorithm.getCustomFilterVariables()
CustomExpressionVariablesParameter	FilterROIByOverlapAlgorithm.getCustomVariables()
DefaultExpressionParameter	FilterROIListsAlgorithm.getFilter()
DefaultExpressionParameter	FilterRoiByStatisticsAlgorithm.getFilters()
DefaultExpressionParameter	FilterRoiByNameAlgorithm.getFilters()
ImageStatisticsSetParameter	FilterRoiByStatisticsAlgorithm.getMeasurements()
RoiOutline	RemoveBorderRoisAlgorithm.getOutline()
DefaultExpressionParameter	FilterROIByOverlapAlgorithm.ROIFilterSettings.getOverlapFilter()
ImageStatisticsSetParameter	FilterROIByOverlapAlgorithm.getOverlapFilterMeasurements()
FilterROIByOverlapAlgorithm.ROIFilterSettings	FilterROIByOverlapAlgorithm.getRoi1Settings()
FilterROIByOverlapAlgorithm.ROIFilterSettings	FilterROIByOverlapAlgorithm.getRoi2Settings()
JIPipeDynamicParameterCollection	FilterRoiByStatisticsScriptAlgorithm.getScriptParameters()
IntegerRange	SliceROIListAlgorithm.getSelectedIndices()
boolean	SliceROIListAlgorithm.isAutoClamp()
boolean	FilterROIByOverlapAlgorithm.ROIFilterSettings.isConsumeOnOverlap()
boolean	FilterROIByOverlapAlgorithm.ROIFilterSettings.isEnabled()
boolean	FilterROIByOverlapAlgorithm.ROIFilterSettings.isFastMode()
boolean	FilterROIListsAlgorithm.isIncludeAnnotations()
boolean	FilterROIByOverlapAlgorithm.ROIFilterSettings.isInvert()
boolean	FilterRoiByStatisticsAlgorithm.isMeasureInPhysicalUnits()
boolean	FilterROIByOverlapAlgorithm.ROIFilterSettings.isMeasureInPhysicalUnits()
boolean	FilterRoiByStatisticsAlgorithm.isOutputEmptyLists()
boolean	FilterRoiByNameAlgorithm.isOutputEmptyLists()
boolean	FilterROIListsAlgorithm.isOutputEmptyLists()
boolean	FilterROIByOverlapAlgorithm.ROIFilterSettings.isOutputOverlaps()
void	SliceROIListAlgorithm.setAutoClamp(boolean autoClamp)
void	RemoveBorderRoisAlgorithm.setBorderDefinition(Margin borderDefinition)
void	FilterRoiByStatisticsScriptAlgorithm.setCode(PythonScript code)
void	FilterROIByOverlapAlgorithm.ROIFilterSettings.setConsumeOnOverlap(boolean consumeOnOverlap)
void	FilterROIByOverlapAlgorithm.ROIFilterSettings.setEnabled(boolean enabled)
void	FilterROIByOverlapAlgorithm.ROIFilterSettings.setFastMode(boolean fastMode)
void	FilterROIListsAlgorithm.setFilter(DefaultExpressionParameter filter)
void	FilterRoiByStatisticsAlgorithm.setFilters(DefaultExpressionParameter filters)
void	FilterRoiByNameAlgorithm.setFilters(DefaultExpressionParameter filters)
void	FilterROIListsAlgorithm.setIncludeAnnotations(boolean includeAnnotations)
void	FilterROIByOverlapAlgorithm.ROIFilterSettings.setInvert(boolean invert)
void	FilterRoiByStatisticsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	FilterROIByOverlapAlgorithm.ROIFilterSettings.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	FilterRoiByStatisticsAlgorithm.setMeasurements(ImageStatisticsSetParameter measurements)
void	RemoveBorderRoisAlgorithm.setOutline(RoiOutline outline)
void	FilterRoiByStatisticsAlgorithm.setOutputEmptyLists(boolean outputEmptyLists)
void	FilterRoiByNameAlgorithm.setOutputEmptyLists(boolean outputEmptyLists)
void	FilterROIListsAlgorithm.setOutputEmptyLists(boolean outputEmptyLists)
void	FilterROIByOverlapAlgorithm.ROIFilterSettings.setOutputOverlaps(boolean outputOverlaps)
void	FilterROIByOverlapAlgorithm.ROIFilterSettings.setOverlapFilter(DefaultExpressionParameter overlapFilter)
void	FilterROIByOverlapAlgorithm.setOverlapFilterMeasurements(ImageStatisticsSetParameter overlapFilterMeasurements)
void	SliceROIListAlgorithm.setSelectedIndices(IntegerRange selectedIndices)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.generate

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.generate with annotations of type JIPipeParameter

Modifier and Type	Method and Description
TableToRectangularROIAlgorithm.Anchor	TableToRectangularROIAlgorithm.getAnchor()
TableColumnSourceExpressionParameter	TableToRectangularROIAlgorithm.getColumnC()
TableColumnSourceExpressionParameter	TableToCircularROIAlgorithm.getColumnC()
TableColumnSourceExpressionParameter	TableToRectangularROIAlgorithm.getColumnHeight()
TableColumnSourceExpressionParameter	TableToCircularROIAlgorithm.getColumnRadius()
TableColumnSourceExpressionParameter	TableToRectangularROIAlgorithm.getColumnT()
TableColumnSourceExpressionParameter	TableToCircularROIAlgorithm.getColumnT()
TableColumnSourceExpressionParameter	TableToRectangularROIAlgorithm.getColumnWidth()
TableColumnSourceExpressionParameter	TableToRectangularROIAlgorithm.getColumnX1()
TableColumnSourceExpressionParameter	TableToCircularROIAlgorithm.getColumnX1()
TableColumnSourceExpressionParameter	TableToRectangularROIAlgorithm.getColumnX2()
TableColumnSourceExpressionParameter	TableToRectangularROIAlgorithm.getColumnY1()
TableColumnSourceExpressionParameter	TableToCircularROIAlgorithm.getColumnY1()
TableColumnSourceExpressionParameter	TableToRectangularROIAlgorithm.getColumnY2()
TableColumnSourceExpressionParameter	TableToRectangularROIAlgorithm.getColumnZ()
TableColumnSourceExpressionParameter	TableToCircularROIAlgorithm.getColumnZ()
TableToRectangularROIAlgorithm.Mode	TableToRectangularROIAlgorithm.getMode()
Margin.List	AppendRectangularRoiAlgorithm.getRectangles() Deprecated.
RectangleList	DefineRectangularRoiAlgorithm.getRectangles() Deprecated.
Margin.List	ReferencedAppendRectangularRoiAlgorithm.getRectangles() Deprecated.
Margin.List	ReferencedDefineRectangularRoiAlgorithm.getRectangles() Deprecated.
int	MaskToRoiAlgorithm.getThreshold()
boolean	MaskToRoiAlgorithm.isInvertThreshold()
boolean	TableToRectangularROIAlgorithm.isOneBasedPositions()
boolean	TableToCircularROIAlgorithm.isOneBasedPositions()
boolean	DefineRectangularRoiAlgorithm.isSplit() Deprecated.
boolean	ReferencedDefineRectangularRoiAlgorithm.isSplit() Deprecated.
void	TableToRectangularROIAlgorithm.setAnchor(TableToRectangularROIAlgorithm.Anchor anchor)
void	TableToRectangularROIAlgorithm.setColumnC(TableColumnSourceExpressionParameter columnC)
void	TableToCircularROIAlgorithm.setColumnC(TableColumnSourceExpressionParameter columnC)
void	TableToRectangularROIAlgorithm.setColumnHeight(TableColumnSourceExpressionParameter columnHeight)
void	TableToCircularROIAlgorithm.setColumnRadius(TableColumnSourceExpressionParameter columnRadius)
void	TableToRectangularROIAlgorithm.setColumnT(TableColumnSourceExpressionParameter columnT)
void	TableToCircularROIAlgorithm.setColumnT(TableColumnSourceExpressionParameter columnT)
void	TableToRectangularROIAlgorithm.setColumnWidth(TableColumnSourceExpressionParameter columnWidth)
void	TableToRectangularROIAlgorithm.setColumnX1(TableColumnSourceExpressionParameter columnX1)
void	TableToCircularROIAlgorithm.setColumnX1(TableColumnSourceExpressionParameter columnX1)
void	TableToRectangularROIAlgorithm.setColumnX2(TableColumnSourceExpressionParameter columnX2)
void	TableToRectangularROIAlgorithm.setColumnY1(TableColumnSourceExpressionParameter columnY1)
void	TableToCircularROIAlgorithm.setColumnY1(TableColumnSourceExpressionParameter columnY1)
void	TableToRectangularROIAlgorithm.setColumnY2(TableColumnSourceExpressionParameter columnY2)
void	TableToRectangularROIAlgorithm.setColumnZ(TableColumnSourceExpressionParameter columnZ)
void	TableToCircularROIAlgorithm.setColumnZ(TableColumnSourceExpressionParameter columnZ)
void	MaskToRoiAlgorithm.setInvertThreshold(boolean invertThreshold)
void	TableToRectangularROIAlgorithm.setMode(TableToRectangularROIAlgorithm.Mode mode)
void	TableToRectangularROIAlgorithm.setOneBasedPositions(boolean oneBasedPositions)
void	TableToCircularROIAlgorithm.setOneBasedPositions(boolean oneBasedPositions)
void	AppendRectangularRoiAlgorithm.setRectangles(Margin.List rectangles) Deprecated.
void	ReferencedAppendRectangularRoiAlgorithm.setRectangles(Margin.List rectangles) Deprecated.
void	ReferencedDefineRectangularRoiAlgorithm.setRectangles(Margin.List rectangles) Deprecated.
void	DefineRectangularRoiAlgorithm.setRectangles(RectangleList rectangles) Deprecated.
void	DefineRectangularRoiAlgorithm.setSplit(boolean split) Deprecated.
void	ReferencedDefineRectangularRoiAlgorithm.setSplit(boolean split) Deprecated.
void	MaskToRoiAlgorithm.setThreshold(int threshold)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.measure

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.measure with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalStringParameter	RoiStatisticsAlgorithm.getIndexAnnotation()
ImageStatisticsSetParameter	RoiStatisticsAlgorithm.getMeasurements()
boolean	CountROIAlgorithm.isAddAnnotations()
boolean	RoiStatisticsAlgorithm.isAddNameToTable()
boolean	RoiStatisticsAlgorithm.isApplyPerChannel()
boolean	RoiStatisticsAlgorithm.isApplyPerFrame()
boolean	RoiStatisticsAlgorithm.isApplyPerSlice()
boolean	RoiStatisticsAlgorithm.isMeasureInPhysicalUnits()
void	CountROIAlgorithm.setAddAnnotations(boolean addAnnotations)
void	RoiStatisticsAlgorithm.setAddNameToTable(boolean addNameToTable)
void	RoiStatisticsAlgorithm.setApplyPerChannel(boolean applyPerChannel)
void	RoiStatisticsAlgorithm.setApplyPerFrame(boolean applyPerFrame)
void	RoiStatisticsAlgorithm.setApplyPerSlice(boolean applyPerSlice)
void	RoiStatisticsAlgorithm.setIndexAnnotation(OptionalStringParameter indexAnnotation)
void	RoiStatisticsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	RoiStatisticsAlgorithm.setMeasurements(ImageStatisticsSetParameter measurements)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.merge

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.merge with annotations of type JIPipeParameter

Modifier and Type	Method and Description
PythonScript	FilterAndMergeRoiByStatisticsScriptAlgorithm.getCode()
JIPipeDynamicParameterCollection	FilterAndMergeRoiByStatisticsScriptAlgorithm.getScriptParameters()
void	FilterAndMergeRoiByStatisticsScriptAlgorithm.setCode(PythonScript code)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.modify

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.modify with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalAnnotationNameParameter	ChangeRoiPropertiesFromAnnotationsAlgorithm.getCenterScale()
boolean	ChangeRoiPropertiesAlgorithm.getCenterScale()
boolean	ScaleRoiAlgorithm.getCenterScale()
OptionalDefaultExpressionParameter	ChangeRoiPropertiesFromExpressionsAlgorithm.getCenterScale()
CustomExpressionVariablesParameter	ChangeRoiPropertiesFromExpressionsAlgorithm.getCustomFilterVariables()
StringQueryExpression	ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm.getExpression()
OptionalAnnotationNameParameter	ChangeRoiPropertiesFromAnnotationsAlgorithm.getFillColor()
OptionalColorParameter	ChangeRoiPropertiesAlgorithm.getFillColor()
OptionalDefaultExpressionParameter	ChangeRoiPropertiesFromExpressionsAlgorithm.getFillColor()
MeasurementColumn	ColorRoiByStatisticsAlgorithm.getFillMeasurement()
OptionalAnnotationNameParameter	ChangeRoiPropertiesFromAnnotationsAlgorithm.getLineColor()
OptionalColorParameter	ChangeRoiPropertiesAlgorithm.getLineColor()
OptionalDefaultExpressionParameter	ChangeRoiPropertiesFromExpressionsAlgorithm.getLineColor()
MeasurementColumn	ColorRoiByStatisticsAlgorithm.getLineMeasurement()
OptionalAnnotationNameParameter	ChangeRoiPropertiesFromAnnotationsAlgorithm.getLineWidth()
OptionalDoubleParameter	ChangeRoiPropertiesAlgorithm.getLineWidth()
OptionalDefaultExpressionParameter	ChangeRoiPropertiesFromExpressionsAlgorithm.getLineWidth()
OptionalColorMapParameter	ColorRoiByStatisticsAlgorithm.getMapFillColor()
OptionalColorMapParameter	ColorRoiByNameAlgorithm.getMapFillColor()
OptionalColorMapParameter	ColorRoiByStatisticsAlgorithm.getMapLineColor()
OptionalColorMapParameter	ColorRoiByNameAlgorithm.getMapLineColor()
ImageStatisticsSetParameter	ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm.getMeasurements()
ImageStatisticsSetParameter	ChangeRoiPropertiesFromExpressionsAlgorithm.getMeasurements()
RoiFloodFillAlgorithm.Mode	RoiFloodFillAlgorithm.getMode()
RoiOutline	OutlineRoiAlgorithm.getOutline()
OptionalAnnotationNameParameter	ChangeRoiPropertiesFromAnnotationsAlgorithm.getPositionC()
OptionalIntegerParameter	ChangeRoiPropertiesAlgorithm.getPositionC()
OptionalDefaultExpressionParameter	ChangeRoiPropertiesFromExpressionsAlgorithm.getPositionC()
OptionalAnnotationNameParameter	ChangeRoiPropertiesFromAnnotationsAlgorithm.getPositionT()
OptionalIntegerParameter	ChangeRoiPropertiesAlgorithm.getPositionT()
OptionalDefaultExpressionParameter	ChangeRoiPropertiesFromExpressionsAlgorithm.getPositionT()
OptionalAnnotationNameParameter	ChangeRoiPropertiesFromAnnotationsAlgorithm.getPositionX()
OptionalDoubleParameter	ChangeRoiPropertiesAlgorithm.getPositionX()
OptionalDefaultExpressionParameter	ChangeRoiPropertiesFromExpressionsAlgorithm.getPositionX()
OptionalAnnotationNameParameter	ChangeRoiPropertiesFromAnnotationsAlgorithm.getPositionY()
OptionalDoubleParameter	ChangeRoiPropertiesAlgorithm.getPositionY()
OptionalDefaultExpressionParameter	ChangeRoiPropertiesFromExpressionsAlgorithm.getPositionY()
OptionalAnnotationNameParameter	ChangeRoiPropertiesFromAnnotationsAlgorithm.getPositionZ()
OptionalIntegerParameter	ChangeRoiPropertiesAlgorithm.getPositionZ()
OptionalDefaultExpressionParameter	ChangeRoiPropertiesFromExpressionsAlgorithm.getPositionZ()
OptionalAnnotationNameParameter	ChangeRoiPropertiesFromAnnotationsAlgorithm.getRoiName()
OptionalStringParameter	ChangeRoiPropertiesAlgorithm.getRoiName()
OptionalDefaultExpressionParameter	ChangeRoiPropertiesFromExpressionsAlgorithm.getRoiName()
OptionalAnnotationNameParameter	ChangeRoiPropertiesFromAnnotationsAlgorithm.getScaleX()
OptionalDoubleParameter	ChangeRoiPropertiesAlgorithm.getScaleX()
double	ScaleRoiAlgorithm.getScaleX()
OptionalDefaultExpressionParameter	ChangeRoiPropertiesFromExpressionsAlgorithm.getScaleX()
OptionalAnnotationNameParameter	ChangeRoiPropertiesFromAnnotationsAlgorithm.getScaleY()
OptionalDoubleParameter	ChangeRoiPropertiesAlgorithm.getScaleY()
double	ScaleRoiAlgorithm.getScaleY()
OptionalDefaultExpressionParameter	ChangeRoiPropertiesFromExpressionsAlgorithm.getScaleY()
HyperstackDimension	ReorderRoiDimensionsAlgorithm.getTargetC()
HyperstackDimension	ReorderRoiDimensionsAlgorithm.getTargetT()
HyperstackDimension	ReorderRoiDimensionsAlgorithm.getTargetZ()
double	RoiFloodFillAlgorithm.getTolerance()
boolean	ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm.isIncludeAnnotations()
boolean	ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm.isMeasureInPhysicalUnits()
boolean	ChangeRoiPropertiesFromExpressionsAlgorithm.isMeasureInPhysicalUnits()
boolean	RoiFloodFillAlgorithm.isSmooth()
void	ChangeRoiPropertiesAlgorithm.setCenterScale(boolean centerScale)
void	ScaleRoiAlgorithm.setCenterScale(boolean centerScale)
void	ChangeRoiPropertiesFromAnnotationsAlgorithm.setCenterScale(OptionalAnnotationNameParameter centerScale)
void	ChangeRoiPropertiesFromExpressionsAlgorithm.setCenterScale(OptionalDefaultExpressionParameter centerScale)
void	ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm.setExpression(StringQueryExpression expression)
void	ChangeRoiPropertiesFromAnnotationsAlgorithm.setFillColor(OptionalAnnotationNameParameter fillColor)
void	ChangeRoiPropertiesAlgorithm.setFillColor(OptionalColorParameter fillColor)
void	ChangeRoiPropertiesFromExpressionsAlgorithm.setFillColor(OptionalDefaultExpressionParameter fillColor)
void	ColorRoiByStatisticsAlgorithm.setFillMeasurement(MeasurementColumn fillMeasurement)
void	ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm.setIncludeAnnotations(boolean includeAnnotations)
void	ChangeRoiPropertiesFromAnnotationsAlgorithm.setLineColor(OptionalAnnotationNameParameter lineColor)
void	ChangeRoiPropertiesAlgorithm.setLineColor(OptionalColorParameter lineColor)
void	ChangeRoiPropertiesFromExpressionsAlgorithm.setLineColor(OptionalDefaultExpressionParameter lineColor)
void	ColorRoiByStatisticsAlgorithm.setLineMeasurement(MeasurementColumn lineMeasurement)
void	ChangeRoiPropertiesFromAnnotationsAlgorithm.setLineWidth(OptionalAnnotationNameParameter lineWidth)
void	ChangeRoiPropertiesFromExpressionsAlgorithm.setLineWidth(OptionalDefaultExpressionParameter lineWidth)
void	ChangeRoiPropertiesAlgorithm.setLineWidth(OptionalDoubleParameter lineWidth)
void	ColorRoiByStatisticsAlgorithm.setMapFillColor(OptionalColorMapParameter mapFillColor)
void	ColorRoiByNameAlgorithm.setMapFillColor(OptionalColorMapParameter mapFillColor)
void	ColorRoiByStatisticsAlgorithm.setMapLineColor(OptionalColorMapParameter mapLineColor)
void	ColorRoiByNameAlgorithm.setMapLineColor(OptionalColorMapParameter mapLineColor)
void	ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	ChangeRoiPropertiesFromExpressionsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm.setMeasurements(ImageStatisticsSetParameter measurements)
void	ChangeRoiPropertiesFromExpressionsAlgorithm.setMeasurements(ImageStatisticsSetParameter measurements)
void	RoiFloodFillAlgorithm.setMode(RoiFloodFillAlgorithm.Mode mode)
void	OutlineRoiAlgorithm.setOutline(RoiOutline outline)
void	ChangeRoiPropertiesFromAnnotationsAlgorithm.setPositionC(OptionalAnnotationNameParameter positionC)
void	ChangeRoiPropertiesFromExpressionsAlgorithm.setPositionC(OptionalDefaultExpressionParameter positionC)
void	ChangeRoiPropertiesAlgorithm.setPositionC(OptionalIntegerParameter positionC)
void	ChangeRoiPropertiesFromAnnotationsAlgorithm.setPositionT(OptionalAnnotationNameParameter positionT)
void	ChangeRoiPropertiesFromExpressionsAlgorithm.setPositionT(OptionalDefaultExpressionParameter positionT)
void	ChangeRoiPropertiesAlgorithm.setPositionT(OptionalIntegerParameter positionT)
void	ChangeRoiPropertiesFromAnnotationsAlgorithm.setPositionX(OptionalAnnotationNameParameter positionX)
void	ChangeRoiPropertiesFromExpressionsAlgorithm.setPositionX(OptionalDefaultExpressionParameter positionX)
void	ChangeRoiPropertiesAlgorithm.setPositionX(OptionalDoubleParameter positionX)
void	ChangeRoiPropertiesFromAnnotationsAlgorithm.setPositionY(OptionalAnnotationNameParameter positionY)
void	ChangeRoiPropertiesFromExpressionsAlgorithm.setPositionY(OptionalDefaultExpressionParameter positionY)
void	ChangeRoiPropertiesAlgorithm.setPositionY(OptionalDoubleParameter positionY)
void	ChangeRoiPropertiesFromAnnotationsAlgorithm.setPositionZ(OptionalAnnotationNameParameter positionZ)
void	ChangeRoiPropertiesFromExpressionsAlgorithm.setPositionZ(OptionalDefaultExpressionParameter positionZ)
void	ChangeRoiPropertiesAlgorithm.setPositionZ(OptionalIntegerParameter positionZ)
void	ChangeRoiPropertiesFromAnnotationsAlgorithm.setRoiName(OptionalAnnotationNameParameter roiName)
void	ChangeRoiPropertiesFromExpressionsAlgorithm.setRoiName(OptionalDefaultExpressionParameter roiName)
void	ChangeRoiPropertiesAlgorithm.setRoiName(OptionalStringParameter roiName)
void	ScaleRoiAlgorithm.setScaleX(double scaleX)
void	ChangeRoiPropertiesFromAnnotationsAlgorithm.setScaleX(OptionalAnnotationNameParameter scaleX)
void	ChangeRoiPropertiesFromExpressionsAlgorithm.setScaleX(OptionalDefaultExpressionParameter scaleX)
void	ChangeRoiPropertiesAlgorithm.setScaleX(OptionalDoubleParameter scaleX)
void	ScaleRoiAlgorithm.setScaleY(double scaleY)
void	ChangeRoiPropertiesFromAnnotationsAlgorithm.setScaleY(OptionalAnnotationNameParameter scaleY)
void	ChangeRoiPropertiesFromExpressionsAlgorithm.setScaleY(OptionalDefaultExpressionParameter scaleY)
void	ChangeRoiPropertiesAlgorithm.setScaleY(OptionalDoubleParameter scaleY)
void	RoiFloodFillAlgorithm.setSmooth(boolean smooth)
void	ReorderRoiDimensionsAlgorithm.setTargetC(HyperstackDimension targetC)
void	ReorderRoiDimensionsAlgorithm.setTargetT(HyperstackDimension targetT)
void	ReorderRoiDimensionsAlgorithm.setTargetZ(HyperstackDimension targetZ)
void	RoiFloodFillAlgorithm.setTolerance(double tolerance)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.properties

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.properties with annotations of type JIPipeParameter

Modifier and Type	Method and Description
CustomExpressionVariablesParameter	SetRoiMetadataByStatisticsAlgorithm.getCustomVariables()
DefaultExpressionParameter	RemoveROIMetadataAlgorithm.getFilterExpression()
OptionalStringParameter	ExtractROIMetadataAlgorithm.getIndexColumn()
String	SetRoiMetadataByStatisticsAlgorithm.MetadataProperty.getKey()
ImageStatisticsSetParameter	SetRoiMetadataByStatisticsAlgorithm.getMeasurements()
ParameterCollectionList	SetRoiMetadataByStatisticsAlgorithm.getMetadataGenerators()
OptionalStringParameter	ExtractROIMetadataAlgorithm.getNameColumn()
TableColumnSourceExpressionParameter	SetROIMetadataFromTableAlgorithm.getRoiIndexColumn()
DefaultExpressionParameter	SetRoiMetadataByStatisticsAlgorithm.MetadataProperty.getValue()
boolean	SetRoiMetadataByStatisticsAlgorithm.isClearBeforeWrite()
boolean	SetROIMetadataFromTableAlgorithm.isClearBeforeWrite()
boolean	SetRoiMetadataByStatisticsAlgorithm.isMeasureInPhysicalUnits()
void	SetRoiMetadataByStatisticsAlgorithm.setClearBeforeWrite(boolean clearBeforeWrite)
void	SetROIMetadataFromTableAlgorithm.setClearBeforeWrite(boolean clearBeforeWrite)
void	RemoveROIMetadataAlgorithm.setFilterExpression(DefaultExpressionParameter filterExpression)
void	ExtractROIMetadataAlgorithm.setIndexColumn(OptionalStringParameter indexColumn)
void	SetRoiMetadataByStatisticsAlgorithm.MetadataProperty.setKey(String key)
void	SetRoiMetadataByStatisticsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	SetRoiMetadataByStatisticsAlgorithm.setMeasurements(ImageStatisticsSetParameter measurements)
void	SetRoiMetadataByStatisticsAlgorithm.setMetadataGenerators(ParameterCollectionList metadataGenerators)
void	ExtractROIMetadataAlgorithm.setNameColumn(OptionalStringParameter nameColumn)
void	SetROIMetadataFromTableAlgorithm.setRoiIndexColumn(TableColumnSourceExpressionParameter roiIndexColumn)
void	SetRoiMetadataByStatisticsAlgorithm.MetadataProperty.setValue(DefaultExpressionParameter value)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.sort

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.sort with annotations of type JIPipeParameter

Modifier and Type	Method and Description
CustomExpressionVariablesParameter	SortRoiListByExpressionsAndMeasurementsAlgorithm.getCustomFilterVariables()
StringQueryExpression	SortRoiListByExpressionsAndMeasurementsAlgorithm.getExpression()
OptionalColorMapParameter	SortAndExtractRoiByStatisticsAlgorithm.getMapFillColor() Deprecated.
OptionalColorMapParameter	SortAndExtractRoiByStatisticsAlgorithm2.getMapFillColor()
OptionalColorMapParameter	SortAndExtractRoiByStatisticsAlgorithm.getMapLineColor() Deprecated.
OptionalColorMapParameter	SortAndExtractRoiByStatisticsAlgorithm2.getMapLineColor()
ImageStatisticsSetParameter	SortRoiListByExpressionsAndMeasurementsAlgorithm.getMeasurements()
OptionalIntegerRange	SortAndExtractRoiByStatisticsAlgorithm2.getSelectedIndices()
NumericFunctionExpression	SortAndExtractRoiByStatisticsAlgorithm.getSelection() Deprecated.
MeasurementColumnSortOrder.List	SortAndExtractRoiByStatisticsAlgorithm.getSortOrderList() Deprecated.
MeasurementColumnSortOrder.List	SortAndExtractRoiByStatisticsAlgorithm2.getSortOrderList()
boolean	SortAndExtractRoiByStatisticsAlgorithm.isAutoClamp() Deprecated.
boolean	SortAndExtractRoiByStatisticsAlgorithm2.isAutoClamp()
boolean	SortRoiListByExpressionsAndMeasurementsAlgorithm.isIncludeAnnotations()
boolean	SortRoiListByExpressionsAndMeasurementsAlgorithm.isMeasureInPhysicalUnits()
boolean	SortRoiListByExpressionsAndMeasurementsAlgorithm.isReverseSortOrder()
void	SortAndExtractRoiByStatisticsAlgorithm.setAutoClamp(boolean autoClamp) Deprecated.
void	SortAndExtractRoiByStatisticsAlgorithm2.setAutoClamp(boolean autoClamp)
void	SortRoiListByExpressionsAndMeasurementsAlgorithm.setExpression(StringQueryExpression expression)
void	SortRoiListByExpressionsAndMeasurementsAlgorithm.setIncludeAnnotations(boolean includeAnnotations)
void	SortAndExtractRoiByStatisticsAlgorithm.setMapFillColor(OptionalColorMapParameter mapFillColor) Deprecated.
void	SortAndExtractRoiByStatisticsAlgorithm2.setMapFillColor(OptionalColorMapParameter mapFillColor)
void	SortAndExtractRoiByStatisticsAlgorithm.setMapLineColor(OptionalColorMapParameter mapLineColor) Deprecated.
void	SortAndExtractRoiByStatisticsAlgorithm2.setMapLineColor(OptionalColorMapParameter mapLineColor)
void	SortRoiListByExpressionsAndMeasurementsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	SortRoiListByExpressionsAndMeasurementsAlgorithm.setMeasurements(ImageStatisticsSetParameter measurements)
void	SortRoiListByExpressionsAndMeasurementsAlgorithm.setReverseSortOrder(boolean reverseSortOrder)
void	SortAndExtractRoiByStatisticsAlgorithm2.setSelectedIndices(OptionalIntegerRange selectedIndices)
void	SortAndExtractRoiByStatisticsAlgorithm.setSelection(NumericFunctionExpression selection) Deprecated.
void	SortAndExtractRoiByStatisticsAlgorithm.setSortOrderList(MeasurementColumnSortOrder.List sortOrderList) Deprecated.
void	SortAndExtractRoiByStatisticsAlgorithm2.setSortOrderList(MeasurementColumnSortOrder.List sortOrderList)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.split

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.split with annotations of type JIPipeParameter

Modifier and Type	Method and Description
DefaultExpressionParameter	ExplodeRoiAlgorithm.getAnnotationValue()
CustomExpressionVariablesParameter	ExplodeRoiAlgorithm.getCustomExpressionVariables()
OptionalStringParameter	ExplodeRoiAlgorithm.getGeneratedAnnotation()
void	ExplodeRoiAlgorithm.setAnnotationValue(DefaultExpressionParameter annotationValue)
void	ExplodeRoiAlgorithm.setGeneratedAnnotation(OptionalStringParameter generatedAnnotation)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.segment

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.segment with annotations of type JIPipeParameter

Modifier and Type	Method and Description
Neighborhood2D3D	SeededWatershedSegmentationAlgorithm.getConnectivity()
Neighborhood2D3D	ClassicWatershedSegmentationAlgorithm.getConnectivity()
double	RidgeDetector2DAlgorithm.getContrastHigh()
double	RidgeDetector2DAlgorithm.getContrastLow()
OptionalDoubleParameter	ClassicWatershedSegmentationAlgorithm.getCustomHMax()
OptionalDoubleParameter	ClassicWatershedSegmentationAlgorithm.getCustomHMin()
double	RidgeDetector2DAlgorithm.getLineWidth()
double	RidgeDetector2DAlgorithm.getLowerThreshold()
double	RidgeDetector2DAlgorithm.getMaxLength()
double	RidgeDetector2DAlgorithm.getMinLength()
de.biomedical_imaging.ij.steger.OverlapOption	RidgeDetector2DAlgorithm.getOverlapResolution()
double	RidgeDetector2DAlgorithm.getSigma()
ImageROITargetArea	SeededWatershedSegmentationAlgorithm.getTargetArea()
ImageROITargetArea	ClassicWatershedSegmentationAlgorithm.getTargetArea()
double	RidgeDetector2DAlgorithm.getUpperThreshold()
boolean	SeededWatershedSegmentationAlgorithm.isApplyPerSlice()
boolean	ClassicWatershedSegmentationAlgorithm.isApplyPerSlice()
boolean	RidgeDetector2DAlgorithm.isDarkLine()
boolean	RidgeDetector2DAlgorithm.isDoCorrectPosition()
boolean	RidgeDetector2DAlgorithm.isDoEstimateWidth()
boolean	RidgeDetector2DAlgorithm.isDoExtendLine()
boolean	RidgeDetector2DAlgorithm.isEstimateHighThreshold()
boolean	RidgeDetector2DAlgorithm.isEstimateLowThreshold()
boolean	RidgeDetector2DAlgorithm.isEstimateSigma()
boolean	SeededWatershedSegmentationAlgorithm.isGetDams()
void	SeededWatershedSegmentationAlgorithm.setApplyPerSlice(boolean applyPerSlice)
void	ClassicWatershedSegmentationAlgorithm.setApplyPerSlice(boolean applyPerSlice)
void	SeededWatershedSegmentationAlgorithm.setConnectivity(Neighborhood2D3D connectivity)
void	ClassicWatershedSegmentationAlgorithm.setConnectivity(Neighborhood2D3D connectivity)
void	RidgeDetector2DAlgorithm.setContrastHigh(double contrastHigh)
void	RidgeDetector2DAlgorithm.setContrastLow(double contrastLow)
void	ClassicWatershedSegmentationAlgorithm.setCustomHMax(OptionalDoubleParameter customHMax)
void	ClassicWatershedSegmentationAlgorithm.setCustomHMin(OptionalDoubleParameter customHMin)
void	RidgeDetector2DAlgorithm.setDarkLine(boolean darkLine)
void	RidgeDetector2DAlgorithm.setDoCorrectPosition(boolean doCorrectPosition)
void	RidgeDetector2DAlgorithm.setDoEstimateWidth(boolean doEstimateWidth)
void	RidgeDetector2DAlgorithm.setDoExtendLine(boolean doExtendLine)
void	RidgeDetector2DAlgorithm.setEstimateHighThreshold(boolean estimateHighThreshold)
void	RidgeDetector2DAlgorithm.setEstimateLowThreshold(boolean estimateLowThreshold)
void	RidgeDetector2DAlgorithm.setEstimateSigma(boolean estimateSigma)
void	SeededWatershedSegmentationAlgorithm.setGetDams(boolean getDams)
void	RidgeDetector2DAlgorithm.setLineWidth(double lineWidth)
void	RidgeDetector2DAlgorithm.setLowerThreshold(double lowerThreshold)
void	RidgeDetector2DAlgorithm.setMaxLength(double maxLength)
void	RidgeDetector2DAlgorithm.setMinLength(double minLength)
void	RidgeDetector2DAlgorithm.setOverlapResolution(de.biomedical_imaging.ij.steger.OverlapOption overlapResolution)
void	RidgeDetector2DAlgorithm.setSigma(double sigma)
void	SeededWatershedSegmentationAlgorithm.setTargetArea(ImageROITargetArea targetArea)
void	ClassicWatershedSegmentationAlgorithm.setTargetArea(ImageROITargetArea targetArea)
void	RidgeDetector2DAlgorithm.setUpperThreshold(double upperThreshold)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalStringParameter	KeyValueThresholdPartitionAveragesGenerator.getClass0CountColumnName()
OptionalStringParameter	KeyValueThresholdPartitionAveragesGenerator.getClass0MeanColumnName()
OptionalStringParameter	KeyValueThresholdPartitionAveragesGenerator.getClass0SumColumnName()
OptionalStringParameter	KeyValueThresholdPartitionAveragesGenerator.getClass1CountColumnName()
OptionalStringParameter	KeyValueThresholdPartitionAveragesGenerator.getClass1MeanColumnName()
OptionalStringParameter	KeyValueThresholdPartitionAveragesGenerator.getClass1SumColumnName()
OptionalStringParameter	KeyValueAveragesGenerator.getCountColumnName()
ParameterCollectionList	KeyValueThresholdPartitionGenerator.getGeneratedColumns()
DefaultExpressionParameter	KeyValueHistogramGenerator.getIntegrationFunction()
DefaultExpressionParameter	KeyValueThresholdStatisticsGenerator.getIntegrationFunctionBackground()
TableColumnIntegrationParameter	FastKeyValueThresholdStatisticsGenerator.getIntegrationFunctionBackground()
DefaultExpressionParameter	KeyValueThresholdStatisticsGenerator.getIntegrationFunctionForeground()
TableColumnIntegrationParameter	FastKeyValueThresholdStatisticsGenerator.getIntegrationFunctionForeground()
OptionalStringParameter	KeyValueThresholdPartitionAveragesGenerator.getKeyColumnName()
OptionalStringParameter	KeyValueAveragesGenerator.getKeyColumnName()
OptionalStringParameter	KeyValueAveragesGenerator.getMeanColumnName()
HistogramGenerator.MultiChannelMode	HistogramGenerator.getMultiChannelMode()
String	KeyValueThresholdPartitionGenerator.GeneratedColumn.getName()
String	AverageKeyValueThresholdStatisticsGenerator.getOutputBackgroundColumn()
String	KeyValueThresholdStatisticsGenerator.getOutputBackgroundColumn()
String	FastKeyValueThresholdStatisticsGenerator.getOutputBackgroundColumn()
String	AverageKeyValueThresholdStatisticsGenerator.getOutputForegroundColumn()
String	KeyValueThresholdStatisticsGenerator.getOutputForegroundColumn()
String	FastKeyValueThresholdStatisticsGenerator.getOutputForegroundColumn()
String	KeyValueHistogramGenerator.getOutputKeyColumn()
String	AverageKeyValueThresholdStatisticsGenerator.getOutputThresholdColumn()
String	KeyValueThresholdStatisticsGenerator.getOutputThresholdColumn()
String	FastKeyValueThresholdStatisticsGenerator.getOutputThresholdColumn()
String	KeyValueHistogramGenerator.getOutputValueColumn()
String	HistogramGenerator.getSliceAnnotation()
ImageROITargetArea	KeyValueThresholdPartitionAveragesGenerator.getSourceArea()
ImageROITargetArea	KeyValueAveragesGenerator.getSourceArea()
ImageROITargetArea	KeyValueHistogramGenerator.getSourceArea()
ImageROITargetArea	KeyValueThresholdPartitionGenerator.getSourceArea()
OptionalStringParameter	KeyValueAveragesGenerator.getSumColumnName()
DefaultExpressionParameter	KeyValueThresholdPartitionGenerator.GeneratedColumn.getValue()
boolean	HistogramGenerator.isApplyPerSlice()
boolean	KeyValueHistogramGenerator.isCumulative()
boolean	AverageKeyValueThresholdStatisticsGenerator.isInvertThreshold()
boolean	KeyValueThresholdStatisticsGenerator.isInvertThreshold()
boolean	FastKeyValueThresholdStatisticsGenerator.isInvertThreshold()
boolean	HistogramGenerator.isNormalize()
boolean	KeyValueHistogramGenerator.isNormalize()
boolean	KeyValueThresholdPartitionGenerator.GeneratedColumn.isSkipEmpty()
void	HistogramGenerator.setApplyPerSlice(boolean applyPerSlice)
void	KeyValueThresholdPartitionAveragesGenerator.setClass0CountColumnName(OptionalStringParameter class0CountColumnName)
void	KeyValueThresholdPartitionAveragesGenerator.setClass0MeanColumnName(OptionalStringParameter class0MeanColumnName)
void	KeyValueThresholdPartitionAveragesGenerator.setClass0SumColumnName(OptionalStringParameter class0SumColumnName)
void	KeyValueThresholdPartitionAveragesGenerator.setClass1CountColumnName(OptionalStringParameter class1CountColumnName)
void	KeyValueThresholdPartitionAveragesGenerator.setClass1MeanColumnName(OptionalStringParameter class1MeanColumnName)
void	KeyValueThresholdPartitionAveragesGenerator.setClass1SumColumnName(OptionalStringParameter class1SumColumnName)
void	KeyValueAveragesGenerator.setCountColumnName(OptionalStringParameter countColumnName)
void	KeyValueHistogramGenerator.setCumulative(boolean cumulative)
void	KeyValueThresholdPartitionGenerator.setGeneratedColumns(ParameterCollectionList generatedColumns)
void	KeyValueHistogramGenerator.setIntegrationFunction(DefaultExpressionParameter integrationFunction)
void	KeyValueThresholdStatisticsGenerator.setIntegrationFunctionBackground(DefaultExpressionParameter integrationFunctionBackground)
void	FastKeyValueThresholdStatisticsGenerator.setIntegrationFunctionBackground(TableColumnIntegrationParameter integrationFunctionBackground)
void	KeyValueThresholdStatisticsGenerator.setIntegrationFunctionForeground(DefaultExpressionParameter integrationFunctionForeground)
void	FastKeyValueThresholdStatisticsGenerator.setIntegrationFunctionForeground(TableColumnIntegrationParameter integrationFunctionForeground)
void	AverageKeyValueThresholdStatisticsGenerator.setInvertThreshold(boolean invertThreshold)
void	KeyValueThresholdStatisticsGenerator.setInvertThreshold(boolean invertThreshold)
void	FastKeyValueThresholdStatisticsGenerator.setInvertThreshold(boolean invertThreshold)
void	KeyValueThresholdPartitionAveragesGenerator.setKeyColumnName(OptionalStringParameter keyColumnName)
void	KeyValueAveragesGenerator.setKeyColumnName(OptionalStringParameter keyColumnName)
void	KeyValueAveragesGenerator.setMeanColumnName(OptionalStringParameter meanColumnName)
void	HistogramGenerator.setMultiChannelMode(HistogramGenerator.MultiChannelMode multiChannelMode)
void	KeyValueThresholdPartitionGenerator.GeneratedColumn.setName(String name)
void	HistogramGenerator.setNormalize(boolean normalize)
void	KeyValueHistogramGenerator.setNormalize(boolean normalize)
void	AverageKeyValueThresholdStatisticsGenerator.setOutputBackgroundColumn(String outputBackgroundColumn)
void	KeyValueThresholdStatisticsGenerator.setOutputBackgroundColumn(String outputBackgroundColumn)
void	FastKeyValueThresholdStatisticsGenerator.setOutputBackgroundColumn(String outputBackgroundColumn)
void	AverageKeyValueThresholdStatisticsGenerator.setOutputForegroundColumn(String outputForegroundColumn)
void	KeyValueThresholdStatisticsGenerator.setOutputForegroundColumn(String outputForegroundColumn)
void	FastKeyValueThresholdStatisticsGenerator.setOutputForegroundColumn(String outputForegroundColumn)
void	KeyValueHistogramGenerator.setOutputKeyColumn(String outputKeyColumn)
void	AverageKeyValueThresholdStatisticsGenerator.setOutputThresholdColumn(String outputThresholdColumn)
void	KeyValueThresholdStatisticsGenerator.setOutputThresholdColumn(String outputThresholdColumn)
void	FastKeyValueThresholdStatisticsGenerator.setOutputThresholdColumn(String outputThresholdColumn)
void	KeyValueHistogramGenerator.setOutputValueColumn(String outputValueColumn)
void	KeyValueThresholdPartitionGenerator.GeneratedColumn.setSkipEmpty(boolean skipEmpty)
void	HistogramGenerator.setSliceAnnotation(String sliceAnnotation)
void	KeyValueThresholdPartitionAveragesGenerator.setSourceArea(ImageROITargetArea sourceArea)
void	KeyValueAveragesGenerator.setSourceArea(ImageROITargetArea sourceArea)
void	KeyValueHistogramGenerator.setSourceArea(ImageROITargetArea sourceArea)
void	KeyValueThresholdPartitionGenerator.setSourceArea(ImageROITargetArea sourceArea)
void	KeyValueAveragesGenerator.setSumColumnName(OptionalStringParameter sumColumnName)
void	KeyValueThresholdPartitionGenerator.GeneratedColumn.setValue(DefaultExpressionParameter value)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold with annotations of type JIPipeParameter

Modifier and Type	Method and Description
int	LinesHoughDetection2DAlgorithm.getAccumulatorThreshold()
AutoThreshold2DAlgorithm	HessianSegmentation2DAlgorithm.getAutoThresholding()
AutoThreshold2DAlgorithm	InternalGradientSegmentation2DAlgorithm.getAutoThresholding()
AutoThreshold2DAlgorithm	BrightSpotsSegmentation2DAlgorithm.getAutoThresholding()
int	CircularHoughSegmentation2DAlgorithm.getBandwidth()
CLAHEContrastEnhancer	InternalGradientSegmentation2DAlgorithm.getContrastEnhancer()
int	HessianSegmentation2DAlgorithm.getDespeckleIterations()
int	BrightSpotsSegmentation2DAlgorithm.getDilationErodeSteps()
int	InternalGradientSegmentation2DAlgorithm.getDilationIterations()
EigenvalueSelection2D	HessianSegmentation2DAlgorithm.getEigenvalueSelection()
int	InternalGradientSegmentation2DAlgorithm.getErosionIterations()
double	BrightSpotsSegmentation2DAlgorithm.getGaussianSigma()
double	InternalGradientSegmentation2DAlgorithm.getGaussSigma()
double	HessianSegmentation2DAlgorithm.getGradientRadius()
int	InternalGradientSegmentation2DAlgorithm.getInternalGradientRadius()
int	CircularHoughSegmentation2DAlgorithm.getLocalRadius()
int	CircularHoughSegmentation2DAlgorithm.getMaxNumCircles()
int	FastCircularHoughSegmentation2DAlgorithm.getMaxRadius()
int	CircularHoughSegmentation2DAlgorithm.getMaxRadius()
float	ManualThreshold32F2DAlgorithm.getMaxThreshold()
OptionalAnnotationNameParameter	ManualThreshold8U2DAlgorithm.getMaxThresholdAnnotation()
OptionalAnnotationNameParameter	ManualThreshold32F2DAlgorithm.getMaxThresholdAnnotation()
OptionalAnnotationNameParameter	ManualThreshold16U2DAlgorithm.getMaxThresholdAnnotation()
OptionalAnnotationNameParameter	ThresholdByAnnotation2DAlgorithm.getMaxThresholdAnnotation()
ij.process.AutoThresholder.Method	AutoThreshold2DAlgorithm.getMethod()
int	CircularHoughSegmentation2DAlgorithm.getMinNumCircles()
int	FastCircularHoughSegmentation2DAlgorithm.getMinRadius()
int	CircularHoughSegmentation2DAlgorithm.getMinRadius()
double	FastCircularHoughSegmentation2DAlgorithm.getMinScore()
float	ManualThreshold32F2DAlgorithm.getMinThreshold()
OptionalAnnotationNameParameter	ManualThreshold8U2DAlgorithm.getMinThresholdAnnotation()
OptionalAnnotationNameParameter	ManualThreshold32F2DAlgorithm.getMinThresholdAnnotation()
OptionalAnnotationNameParameter	ManualThreshold16U2DAlgorithm.getMinThresholdAnnotation()
OptionalAnnotationNameParameter	ThresholdByAnnotation2DAlgorithm.getMinThresholdAnnotation()
double	PercentileThreshold8U2DAlgorithm.getPercentile()
OptionalFloatParameter	LinesHoughDetection2DAlgorithm.getPixelThreshold()
int	CircularHoughSegmentation2DAlgorithm.getRadiusIncrement()
double	CircularHoughSegmentation2DAlgorithm.getRatio()
int	CircularHoughSegmentation2DAlgorithm.getResolution()
DefaultExpressionParameter	LinesHoughDetection2DAlgorithm.getRoiNameExpression()
int	BrightSpotsSegmentation2DAlgorithm.getRollingBallRadius()
OptionalIntegerParameter	LinesHoughDetection2DAlgorithm.getSelectTopN()
double	HessianSegmentation2DAlgorithm.getSmoothing()
ImageROITargetArea	CustomAutoThreshold2D8UAlgorithm.getSourceArea()
ImageROITargetArea	CustomAutoThreshold2D16UAlgorithm.getSourceArea()
ImageROITargetArea	CustomAutoThreshold2D32FAlgorithm.getSourceArea()
ImageROITargetArea	AutoThreshold2DAlgorithm.getSourceArea()
IntNumberRangeParameter	ManualThreshold8U2DAlgorithm.getThreshold()
double	CircularHoughSegmentation2DAlgorithm.getThreshold()
IntNumberRangeParameter	ManualThreshold16U2DAlgorithm.getThreshold()
OptionalAnnotationNameParameter	CustomAutoThreshold2D8UAlgorithm.getThresholdAnnotation()
OptionalAnnotationNameParameter	CustomAutoThreshold2D16UAlgorithm.getThresholdAnnotation()
OptionalAnnotationNameParameter	CustomAutoThreshold2D32FAlgorithm.getThresholdAnnotation()
OptionalAnnotationNameParameter	AutoThreshold2DAlgorithm.getThresholdAnnotation()
JIPipeTextAnnotationMergeMode	CustomAutoThreshold2D8UAlgorithm.getThresholdAnnotationStrategy()
JIPipeTextAnnotationMergeMode	ManualThreshold8U2DAlgorithm.getThresholdAnnotationStrategy()
JIPipeTextAnnotationMergeMode	CustomAutoThreshold2D16UAlgorithm.getThresholdAnnotationStrategy()
JIPipeTextAnnotationMergeMode	CustomAutoThreshold2D32FAlgorithm.getThresholdAnnotationStrategy()
JIPipeTextAnnotationMergeMode	AutoThreshold2DAlgorithm.getThresholdAnnotationStrategy()
JIPipeTextAnnotationMergeMode	ManualThreshold32F2DAlgorithm.getThresholdAnnotationStrategy()
JIPipeTextAnnotationMergeMode	ManualThreshold16U2DAlgorithm.getThresholdAnnotationStrategy()
DefaultExpressionParameter	CustomAutoThreshold2D8UAlgorithm.getThresholdCalculationExpression()
DefaultExpressionParameter	CustomAutoThreshold2D16UAlgorithm.getThresholdCalculationExpression()
DefaultExpressionParameter	CustomAutoThreshold2D32FAlgorithm.getThresholdCalculationExpression()
DefaultExpressionParameter	CustomAutoThreshold2D8UAlgorithm.getThresholdCombinationExpression()
DefaultExpressionParameter	CustomAutoThreshold2D16UAlgorithm.getThresholdCombinationExpression()
DefaultExpressionParameter	CustomAutoThreshold2D32FAlgorithm.getThresholdCombinationExpression()
DefaultExpressionParameter	AutoThreshold2DAlgorithm.getThresholdCombinationExpression()
AutoThreshold2DAlgorithm.SliceThresholdMode	CustomAutoThreshold2D8UAlgorithm.getThresholdMode()
AutoThreshold2DAlgorithm.SliceThresholdMode	CustomAutoThreshold2D16UAlgorithm.getThresholdMode()
AutoThreshold2DAlgorithm.SliceThresholdMode	CustomAutoThreshold2D32FAlgorithm.getThresholdMode()
AutoThreshold2DAlgorithm.SliceThresholdMode	AutoThreshold2DAlgorithm.getThresholdMode()
boolean	CustomAutoThreshold2D8UAlgorithm.isAccessPixels()
boolean	CustomAutoThreshold2D16UAlgorithm.isAccessPixels()
boolean	CustomAutoThreshold2D32FAlgorithm.isAccessPixels()
boolean	HessianSegmentation2DAlgorithm.isApplyDespeckle()
boolean	InternalGradientSegmentation2DAlgorithm.isApplyFirstCLAHE()
boolean	InternalGradientSegmentation2DAlgorithm.isApplyGaussian()
boolean	HessianSegmentation2DAlgorithm.isApplyInternalGradient()
boolean	InternalGradientSegmentation2DAlgorithm.isApplySecondCLAHE()
boolean	HessianSegmentation2DAlgorithm.isCompareAbsolute()
boolean	AutoThreshold2DAlgorithm.isDarkBackground()
boolean	CircularHoughSegmentation2DAlgorithm.isLocal()
void	CustomAutoThreshold2D8UAlgorithm.setAccessPixels(boolean accessPixels)
void	CustomAutoThreshold2D16UAlgorithm.setAccessPixels(boolean accessPixels)
void	CustomAutoThreshold2D32FAlgorithm.setAccessPixels(boolean accessPixels)
void	LinesHoughDetection2DAlgorithm.setAccumulatorThreshold(int accumulatorThreshold)
void	HessianSegmentation2DAlgorithm.setApplyDespeckle(boolean applyDespeckle)
void	InternalGradientSegmentation2DAlgorithm.setApplyFirstCLAHE(boolean applyFirstCLAHE)
void	InternalGradientSegmentation2DAlgorithm.setApplyGaussian(boolean applyGaussian)
void	HessianSegmentation2DAlgorithm.setApplyInternalGradient(boolean applyInternalGradient)
void	InternalGradientSegmentation2DAlgorithm.setApplySecondCLAHE(boolean applySecondCLAHE)
void	CircularHoughSegmentation2DAlgorithm.setBandwidth(int bandwidth)
void	HessianSegmentation2DAlgorithm.setCompareAbsolute(boolean compareAbsolute)
void	AutoThreshold2DAlgorithm.setDarkBackground(boolean darkBackground)
void	HessianSegmentation2DAlgorithm.setDespeckleIterations(int despeckleIterations)
void	BrightSpotsSegmentation2DAlgorithm.setDilationErodeSteps(int dilationErodeSteps)
void	InternalGradientSegmentation2DAlgorithm.setDilationIterations(int dilationIterations)
void	HessianSegmentation2DAlgorithm.setEigenvalueSelection(EigenvalueSelection2D eigenvalueSelection)
void	InternalGradientSegmentation2DAlgorithm.setErosionIterations(int erosionIterations)
void	BrightSpotsSegmentation2DAlgorithm.setGaussianSigma(double gaussianSigma)
void	InternalGradientSegmentation2DAlgorithm.setGaussSigma(double gaussSigma)
void	HessianSegmentation2DAlgorithm.setGradientRadius(double gradientRadius)
void	InternalGradientSegmentation2DAlgorithm.setInternalGradientRadius(int internalGradientRadius)
void	CircularHoughSegmentation2DAlgorithm.setLocal(boolean local)
void	CircularHoughSegmentation2DAlgorithm.setLocalRadius(int localRadius)
void	CircularHoughSegmentation2DAlgorithm.setMaxNumCircles(int maxNumCircles)
void	FastCircularHoughSegmentation2DAlgorithm.setMaxRadius(int maxRadius)
void	CircularHoughSegmentation2DAlgorithm.setMaxRadius(int maxRadius)
void	ManualThreshold32F2DAlgorithm.setMaxThreshold(float maxThreshold)
void	ManualThreshold8U2DAlgorithm.setMaxThresholdAnnotation(OptionalAnnotationNameParameter maxThresholdAnnotation)
void	ManualThreshold32F2DAlgorithm.setMaxThresholdAnnotation(OptionalAnnotationNameParameter maxThresholdAnnotation)
void	ManualThreshold16U2DAlgorithm.setMaxThresholdAnnotation(OptionalAnnotationNameParameter maxThresholdAnnotation)
void	ThresholdByAnnotation2DAlgorithm.setMaxThresholdAnnotation(OptionalAnnotationNameParameter maxThresholdAnnotation)
void	AutoThreshold2DAlgorithm.setMethod(ij.process.AutoThresholder.Method method)
void	CircularHoughSegmentation2DAlgorithm.setMinNumCircles(int minNumCircles)
void	FastCircularHoughSegmentation2DAlgorithm.setMinRadius(int minRadius)
void	CircularHoughSegmentation2DAlgorithm.setMinRadius(int minRadius)
void	FastCircularHoughSegmentation2DAlgorithm.setMinScore(double minScore)
void	ManualThreshold32F2DAlgorithm.setMinThreshold(float minThreshold)
void	ManualThreshold8U2DAlgorithm.setMinThresholdAnnotation(OptionalAnnotationNameParameter minThresholdAnnotation)
void	ManualThreshold32F2DAlgorithm.setMinThresholdAnnotation(OptionalAnnotationNameParameter minThresholdAnnotation)
void	ManualThreshold16U2DAlgorithm.setMinThresholdAnnotation(OptionalAnnotationNameParameter minThresholdAnnotation)
void	ThresholdByAnnotation2DAlgorithm.setMinThresholdAnnotation(OptionalAnnotationNameParameter minThresholdAnnotation)
void	PercentileThreshold8U2DAlgorithm.setPercentile(double percentile)
void	LinesHoughDetection2DAlgorithm.setPixelThreshold(OptionalFloatParameter pixelThreshold)
void	CircularHoughSegmentation2DAlgorithm.setRadiusIncrement(int radiusIncrement)
void	CircularHoughSegmentation2DAlgorithm.setRatio(double ratio)
void	CircularHoughSegmentation2DAlgorithm.setResolution(int resolution)
void	LinesHoughDetection2DAlgorithm.setRoiNameExpression(DefaultExpressionParameter roiNameExpression)
void	BrightSpotsSegmentation2DAlgorithm.setRollingBallRadius(int rollingBallRadius)
void	LinesHoughDetection2DAlgorithm.setSelectTopN(OptionalIntegerParameter selectTopN)
void	HessianSegmentation2DAlgorithm.setSmoothing(double smoothing)
void	CustomAutoThreshold2D8UAlgorithm.setSourceArea(ImageROITargetArea sourceArea)
void	CustomAutoThreshold2D16UAlgorithm.setSourceArea(ImageROITargetArea sourceArea)
void	CustomAutoThreshold2D32FAlgorithm.setSourceArea(ImageROITargetArea sourceArea)
void	AutoThreshold2DAlgorithm.setSourceArea(ImageROITargetArea sourceArea)
void	CircularHoughSegmentation2DAlgorithm.setThreshold(double threshold)
void	ManualThreshold8U2DAlgorithm.setThreshold(IntNumberRangeParameter threshold)
void	ManualThreshold16U2DAlgorithm.setThreshold(IntNumberRangeParameter threshold)
void	CustomAutoThreshold2D8UAlgorithm.setThresholdAnnotation(OptionalAnnotationNameParameter thresholdAnnotation)
void	CustomAutoThreshold2D16UAlgorithm.setThresholdAnnotation(OptionalAnnotationNameParameter thresholdAnnotation)
void	CustomAutoThreshold2D32FAlgorithm.setThresholdAnnotation(OptionalAnnotationNameParameter thresholdAnnotation)
void	AutoThreshold2DAlgorithm.setThresholdAnnotation(OptionalAnnotationNameParameter thresholdAnnotation)
void	CustomAutoThreshold2D8UAlgorithm.setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy)
void	ManualThreshold8U2DAlgorithm.setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy)
void	CustomAutoThreshold2D16UAlgorithm.setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy)
void	CustomAutoThreshold2D32FAlgorithm.setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy)
void	AutoThreshold2DAlgorithm.setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy)
void	ManualThreshold32F2DAlgorithm.setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy)
void	ManualThreshold16U2DAlgorithm.setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy)
void	CustomAutoThreshold2D8UAlgorithm.setThresholdCalculationExpression(DefaultExpressionParameter thresholdCalculationExpression)
void	CustomAutoThreshold2D16UAlgorithm.setThresholdCalculationExpression(DefaultExpressionParameter thresholdCalculationExpression)
void	CustomAutoThreshold2D32FAlgorithm.setThresholdCalculationExpression(DefaultExpressionParameter thresholdCalculationExpression)
void	CustomAutoThreshold2D8UAlgorithm.setThresholdCombinationExpression(DefaultExpressionParameter thresholdCombinationExpression)
void	CustomAutoThreshold2D16UAlgorithm.setThresholdCombinationExpression(DefaultExpressionParameter thresholdCombinationExpression)
void	CustomAutoThreshold2D32FAlgorithm.setThresholdCombinationExpression(DefaultExpressionParameter thresholdCombinationExpression)
void	AutoThreshold2DAlgorithm.setThresholdCombinationExpression(DefaultExpressionParameter thresholdCombinationExpression)
void	CustomAutoThreshold2D8UAlgorithm.setThresholdMode(AutoThreshold2DAlgorithm.SliceThresholdMode thresholdMode)
void	CustomAutoThreshold2D16UAlgorithm.setThresholdMode(AutoThreshold2DAlgorithm.SliceThresholdMode thresholdMode)
void	CustomAutoThreshold2D32FAlgorithm.setThresholdMode(AutoThreshold2DAlgorithm.SliceThresholdMode thresholdMode)
void	AutoThreshold2DAlgorithm.setThresholdMode(AutoThreshold2DAlgorithm.SliceThresholdMode thresholdMode)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.color

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.color with annotations of type JIPipeParameter

Modifier and Type	Method and Description
IntNumberRangeParameter	ManualRGBThreshold2DAlgorithm.getBlueThreshold()
IntNumberRangeParameter	ManualLABThreshold2DAlgorithm.getBlueYellowThreshold()
IntNumberRangeParameter	ManualHSBThreshold2DAlgorithm.getBrightnessThreshold()
DefaultExpressionParameter	ColorThresholdExpression2D.getExpression()
IntNumberRangeParameter	ManualLABThreshold2DAlgorithm.getGreenRedThreshold()
IntNumberRangeParameter	ManualRGBThreshold2DAlgorithm.getGreenThreshold()
IntNumberRangeParameter	ManualHSBThreshold2DAlgorithm.getHueThreshold()
IntNumberRangeParameter	ManualLABThreshold2DAlgorithm.getLightnessThreshold()
OptionalAnnotationNameParameter	ManualRGBThreshold2DAlgorithm.getMaxBlueThresholdAnnotation()
OptionalAnnotationNameParameter	ManualLABThreshold2DAlgorithm.getMaxBlueYellowThresholdAnnotation()
OptionalAnnotationNameParameter	ManualHSBThreshold2DAlgorithm.getMaxBrightnessThresholdAnnotation()
OptionalAnnotationNameParameter	ManualLABThreshold2DAlgorithm.getMaxGreenRedThresholdAnnotation()
OptionalAnnotationNameParameter	ManualRGBThreshold2DAlgorithm.getMaxGreenThresholdAnnotation()
OptionalAnnotationNameParameter	ManualHSBThreshold2DAlgorithm.getMaxHueThresholdAnnotation()
OptionalAnnotationNameParameter	ManualLABThreshold2DAlgorithm.getMaxLightnessThresholdAnnotation()
OptionalAnnotationNameParameter	ManualRGBThreshold2DAlgorithm.getMaxRedThresholdAnnotation()
OptionalAnnotationNameParameter	ManualHSBThreshold2DAlgorithm.getMaxSaturationThresholdAnnotation()
OptionalAnnotationNameParameter	ManualRGBThreshold2DAlgorithm.getMinBlueThresholdAnnotation()
OptionalAnnotationNameParameter	ManualLABThreshold2DAlgorithm.getMinBlueYellowThresholdAnnotation()
OptionalAnnotationNameParameter	ManualHSBThreshold2DAlgorithm.getMinBrightnessThresholdAnnotation()
OptionalAnnotationNameParameter	ManualLABThreshold2DAlgorithm.getMinGreenRedThresholdAnnotation()
OptionalAnnotationNameParameter	ManualRGBThreshold2DAlgorithm.getMinGreenThresholdAnnotation()
OptionalAnnotationNameParameter	ManualHSBThreshold2DAlgorithm.getMinHueThresholdAnnotation()
OptionalAnnotationNameParameter	ManualLABThreshold2DAlgorithm.getMinLightnessThresholdAnnotation()
OptionalAnnotationNameParameter	ManualRGBThreshold2DAlgorithm.getMinRedThresholdAnnotation()
OptionalAnnotationNameParameter	ManualHSBThreshold2DAlgorithm.getMinSaturationThresholdAnnotation()
IntNumberRangeParameter	ManualRGBThreshold2DAlgorithm.getRedThreshold()
IntNumberRangeParameter	ManualHSBThreshold2DAlgorithm.getSaturationThreshold()
JIPipeTextAnnotationMergeMode	ManualHSBThreshold2DAlgorithm.getThresholdAnnotationStrategy()
JIPipeTextAnnotationMergeMode	ManualRGBThreshold2DAlgorithm.getThresholdAnnotationStrategy()
JIPipeTextAnnotationMergeMode	ManualLABThreshold2DAlgorithm.getThresholdAnnotationStrategy()
void	ManualRGBThreshold2DAlgorithm.setBlueThreshold(IntNumberRangeParameter blueThreshold)
void	ManualLABThreshold2DAlgorithm.setBlueYellowThreshold(IntNumberRangeParameter blueYellowThreshold)
void	ManualHSBThreshold2DAlgorithm.setBrightnessThreshold(IntNumberRangeParameter brightnessThreshold)
void	ColorThresholdExpression2D.setExpression(DefaultExpressionParameter expression)
void	ManualLABThreshold2DAlgorithm.setGreenRedThreshold(IntNumberRangeParameter greenRedThreshold)
void	ManualRGBThreshold2DAlgorithm.setGreenThreshold(IntNumberRangeParameter greenThreshold)
void	ManualHSBThreshold2DAlgorithm.setHueThreshold(IntNumberRangeParameter hueThreshold)
void	ManualLABThreshold2DAlgorithm.setLightnessThreshold(IntNumberRangeParameter lightnessThreshold)
void	ManualRGBThreshold2DAlgorithm.setMaxBlueThresholdAnnotation(OptionalAnnotationNameParameter maxBlueThresholdAnnotation)
void	ManualLABThreshold2DAlgorithm.setMaxBlueYellowThresholdAnnotation(OptionalAnnotationNameParameter maxBlueYellowThresholdAnnotation)
void	ManualHSBThreshold2DAlgorithm.setMaxBrightnessThresholdAnnotation(OptionalAnnotationNameParameter maxBrightnessThresholdAnnotation)
void	ManualLABThreshold2DAlgorithm.setMaxGreenRedThresholdAnnotation(OptionalAnnotationNameParameter maxGreenRedThresholdAnnotation)
void	ManualRGBThreshold2DAlgorithm.setMaxGreenThresholdAnnotation(OptionalAnnotationNameParameter maxGreenThresholdAnnotation)
void	ManualHSBThreshold2DAlgorithm.setMaxHueThresholdAnnotation(OptionalAnnotationNameParameter maxHueThresholdAnnotation)
void	ManualLABThreshold2DAlgorithm.setMaxLightnessThresholdAnnotation(OptionalAnnotationNameParameter maxLightnessThresholdAnnotation)
void	ManualRGBThreshold2DAlgorithm.setMaxRedThresholdAnnotation(OptionalAnnotationNameParameter maxRedThresholdAnnotation)
void	ManualHSBThreshold2DAlgorithm.setMaxSaturationThresholdAnnotation(OptionalAnnotationNameParameter maxSaturationThresholdAnnotation)
void	ManualRGBThreshold2DAlgorithm.setMinBlueThresholdAnnotation(OptionalAnnotationNameParameter minBlueThresholdAnnotation)
void	ManualLABThreshold2DAlgorithm.setMinBlueYellowThresholdAnnotation(OptionalAnnotationNameParameter minBlueYellowThresholdAnnotation)
void	ManualHSBThreshold2DAlgorithm.setMinBrightnessThresholdAnnotation(OptionalAnnotationNameParameter minBrightnessThresholdAnnotation)
void	ManualLABThreshold2DAlgorithm.setMinGreenRedThresholdAnnotation(OptionalAnnotationNameParameter minGreenRedThresholdAnnotation)
void	ManualRGBThreshold2DAlgorithm.setMinGreenThresholdAnnotation(OptionalAnnotationNameParameter minGreenThresholdAnnotation)
void	ManualHSBThreshold2DAlgorithm.setMinHueThresholdAnnotation(OptionalAnnotationNameParameter minHueThresholdAnnotation)
void	ManualLABThreshold2DAlgorithm.setMinLightnessThresholdAnnotation(OptionalAnnotationNameParameter minLightnessThresholdAnnotation)
void	ManualRGBThreshold2DAlgorithm.setMinRedThresholdAnnotation(OptionalAnnotationNameParameter minRedThresholdAnnotation)
void	ManualHSBThreshold2DAlgorithm.setMinSaturationThresholdAnnotation(OptionalAnnotationNameParameter minSaturationThresholdAnnotation)
void	ManualRGBThreshold2DAlgorithm.setRedThreshold(IntNumberRangeParameter redThreshold)
void	ManualHSBThreshold2DAlgorithm.setSaturationThreshold(IntNumberRangeParameter saturationThreshold)
void	ManualHSBThreshold2DAlgorithm.setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy)
void	ManualRGBThreshold2DAlgorithm.setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy)
void	ManualLABThreshold2DAlgorithm.setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.iterative

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.iterative with annotations of type JIPipeParameter

Modifier and Type	Method and Description
CustomExpressionVariablesParameter	IterativeThresholdByROIStatistics2DAlgorithm.getCustomFilterVariables()
IterativeThresholdByROIStatistics2DAlgorithm.FilteringParameters	IterativeThresholdByROIStatistics2DAlgorithm.getFilteringParameters()
ImageStatisticsSetParameter	IterativeThresholdByROIStatistics2DAlgorithm.getMeasurements()
DefaultExpressionParameter	IterativeThresholdByROIStatistics2DAlgorithm.FilteringParameters.getRoiFilterExpression()
DefaultExpressionParameter	IterativeThresholdByROIStatistics2DAlgorithm.ScoreParameters.getScoreAccumulationExpression()
OptionalDefaultExpressionParameter	IterativeThresholdByROIStatistics2DAlgorithm.ScoreParameters.getScoreExpression()
IterativeThresholdByROIStatistics2DAlgorithm.ScoreParameters	IterativeThresholdByROIStatistics2DAlgorithm.getScoreParameters()
OptionalAnnotationNameParameter	IterativeThresholdByROIStatistics2DAlgorithm.getThresholdAnnotation()
JIPipeTextAnnotationMergeMode	IterativeThresholdByROIStatistics2DAlgorithm.getThresholdAnnotationStrategy()
DefaultExpressionParameter	IterativeThresholdByROIStatistics2DAlgorithm.getThresholdCombinationExpression()
DefaultExpressionParameter	IterativeThresholdByROIStatistics2DAlgorithm.FilteringParameters.getThresholdCriteriaExpression()
IntegerRange	IterativeThresholdByROIStatistics2DAlgorithm.getThresholds()
boolean	IterativeThresholdByROIStatistics2DAlgorithm.isExcludeEdgeROIs()
boolean	IterativeThresholdByROIStatistics2DAlgorithm.isMeasureInPhysicalUnits()
void	IterativeThresholdByROIStatistics2DAlgorithm.setExcludeEdgeROIs(boolean excludeEdgeROIs)
void	IterativeThresholdByROIStatistics2DAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	IterativeThresholdByROIStatistics2DAlgorithm.setMeasurements(ImageStatisticsSetParameter measurements)
void	IterativeThresholdByROIStatistics2DAlgorithm.FilteringParameters.setRoiFilterExpression(DefaultExpressionParameter roiFilterExpression)
void	IterativeThresholdByROIStatistics2DAlgorithm.ScoreParameters.setScoreAccumulationExpression(DefaultExpressionParameter scoreAccumulationExpression)
void	IterativeThresholdByROIStatistics2DAlgorithm.ScoreParameters.setScoreExpression(OptionalDefaultExpressionParameter scoreExpression)
void	IterativeThresholdByROIStatistics2DAlgorithm.setThresholdAnnotation(OptionalAnnotationNameParameter thresholdAnnotation)
void	IterativeThresholdByROIStatistics2DAlgorithm.setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy)
void	IterativeThresholdByROIStatistics2DAlgorithm.setThresholdCombinationExpression(DefaultExpressionParameter thresholdCombinationExpression)
void	IterativeThresholdByROIStatistics2DAlgorithm.FilteringParameters.setThresholdCriteriaExpression(DefaultExpressionParameter thresholdCriteriaExpression)
void	IterativeThresholdByROIStatistics2DAlgorithm.setThresholds(IntegerRange thresholds)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.local

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.local with annotations of type JIPipeParameter

Modifier and Type	Method and Description
int	BernsenLocalAutoThreshold2DAlgorithm.getContrastThreshold()
double	NiblackLocalAutoThreshold2DAlgorithm.getK()
double	PhansalkarLocalAutoThreshold2DAlgorithm.getK()
double	SauvolaLocalAutoThreshold2DAlgorithm.getK()
LocalAutoThreshold2DAlgorithm.Method	LocalAutoThreshold2DAlgorithm.getMethod()
int	LocalAutoThreshold2DAlgorithm.getModifier()
int	NiblackLocalAutoThreshold2DAlgorithm.getModifier()
double	PhansalkarLocalAutoThreshold2DAlgorithm.getP()
double	PhansalkarLocalAutoThreshold2DAlgorithm.getQ()
double	PhansalkarLocalAutoThreshold2DAlgorithm.getR()
double	SauvolaLocalAutoThreshold2DAlgorithm.getR()
int	LocalAutoThreshold2DAlgorithm.getRadius()
int	NiblackLocalAutoThreshold2DAlgorithm.getRadius()
int	ContrastLocalAutoThreshold2DAlgorithm.getRadius()
int	BernsenLocalAutoThreshold2DAlgorithm.getRadius()
int	PhansalkarLocalAutoThreshold2DAlgorithm.getRadius()
int	SauvolaLocalAutoThreshold2DAlgorithm.getRadius()
boolean	LocalAutoThreshold2DAlgorithm.isDarkBackground()
boolean	NiblackLocalAutoThreshold2DAlgorithm.isDarkBackground()
boolean	ContrastLocalAutoThreshold2DAlgorithm.isDarkBackground()
boolean	BernsenLocalAutoThreshold2DAlgorithm.isDarkBackground()
boolean	PhansalkarLocalAutoThreshold2DAlgorithm.isDarkBackground()
boolean	SauvolaLocalAutoThreshold2DAlgorithm.isDarkBackground()
void	BernsenLocalAutoThreshold2DAlgorithm.setContrastThreshold(int contrastThreshold)
void	LocalAutoThreshold2DAlgorithm.setDarkBackground(boolean darkBackground)
void	NiblackLocalAutoThreshold2DAlgorithm.setDarkBackground(boolean darkBackground)
void	ContrastLocalAutoThreshold2DAlgorithm.setDarkBackground(boolean darkBackground)
void	BernsenLocalAutoThreshold2DAlgorithm.setDarkBackground(boolean darkBackground)
void	PhansalkarLocalAutoThreshold2DAlgorithm.setDarkBackground(boolean darkBackground)
void	SauvolaLocalAutoThreshold2DAlgorithm.setDarkBackground(boolean darkBackground)
void	NiblackLocalAutoThreshold2DAlgorithm.setK(double k)
void	PhansalkarLocalAutoThreshold2DAlgorithm.setK(double k)
void	SauvolaLocalAutoThreshold2DAlgorithm.setK(double k)
void	LocalAutoThreshold2DAlgorithm.setMethod(LocalAutoThreshold2DAlgorithm.Method method)
void	LocalAutoThreshold2DAlgorithm.setModifier(int modifier)
void	NiblackLocalAutoThreshold2DAlgorithm.setModifier(int modifier)
void	PhansalkarLocalAutoThreshold2DAlgorithm.setP(double p)
void	PhansalkarLocalAutoThreshold2DAlgorithm.setQ(double q)
void	PhansalkarLocalAutoThreshold2DAlgorithm.setR(double r)
void	SauvolaLocalAutoThreshold2DAlgorithm.setR(double r)
boolean	LocalAutoThreshold2DAlgorithm.setRadius(int radius)
boolean	NiblackLocalAutoThreshold2DAlgorithm.setRadius(int radius)
boolean	ContrastLocalAutoThreshold2DAlgorithm.setRadius(int radius)
boolean	BernsenLocalAutoThreshold2DAlgorithm.setRadius(int radius)
boolean	PhansalkarLocalAutoThreshold2DAlgorithm.setRadius(int radius)
boolean	SauvolaLocalAutoThreshold2DAlgorithm.setRadius(int radius)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform with annotations of type JIPipeParameter

Modifier and Type	Method and Description
Anchor	TransformRotateFree2DAlgorithm.getAnchor()
Anchor	CanvasEqualizer.getAnchor()
Anchor	TransformScale2DAlgorithm.getAnchor()
Anchor	TransformEqualCanvasSize2DAlgorithm.getAnchor()
Anchor	TransformExpandCanvas2DAlgorithm.getAnchor()
double	TransformRotateFree2DAlgorithm.getAngle()
JIPipeTextAnnotationMergeMode	TileImage2DAlgorithm.getAnnotationMergeStrategy()
Color	TransformScale2DAlgorithm.getBackground()
Color	TransformRotateFree2DAlgorithm.getBackgroundColor()
Color	CanvasEqualizer.getBackgroundColor()
Color	TransformEqualCanvasSize2DAlgorithm.getBackgroundColor()
Color	TransformExpandCanvas2DAlgorithm.getBackgroundColor()
DefaultExpressionParameter	AddBorder2DAlgorithm.getBorderColor()
BorderMode	TileImage2DAlgorithm.getBorderMode()
BorderMode	AddBorder2DAlgorithm.getBorderMode()
DefaultExpressionParameter	TransformSetHyperstackDimensionsAlgorithm.getcAxis()
TransformFlip2DAlgorithm.FlipMode	TransformFlip2DAlgorithm.getFlipMode()
OptionalAnnotationNameParameter	TileImage2DAlgorithm.getImageHeightAnnotation()
OptionalAnnotationNameParameter	UnTileImage2DAlgorithm.getImageHeightAnnotation()
OptionalAnnotationNameParameter	TileImage2DAlgorithm.getImageWidthAnnotation()
OptionalAnnotationNameParameter	UnTileImage2DAlgorithm.getImageWidthAnnotation()
InterpolationMethod	TransformScale2DAlgorithm.getInterpolationMethod()
InterpolationMethod	TransformScale3DAlgorithm.getInterpolationMethod()
DefaultExpressionParameter	AddBorder2DAlgorithm.getMarginBottom()
DefaultExpressionParameter	AddBorder2DAlgorithm.getMarginLeft()
DefaultExpressionParameter	AddBorder2DAlgorithm.getMarginRight()
DefaultExpressionParameter	AddBorder2DAlgorithm.getMarginTop()
double	Warp2DAlgorithm.getMultiplier()
OptionalAnnotationNameParameter	TileImage2DAlgorithm.getNumTilesX()
OptionalAnnotationNameParameter	TileImage2DAlgorithm.getNumTilesY()
int	TileImage2DAlgorithm.getOverlapX()
int	TileImage2DAlgorithm.getOverlapY()
Margin	TransformCrop2DAlgorithm.getRoi()
TransformRotate2DAlgorithm.RotationMode	TransformRotate2DAlgorithm.getRotationDirection()
int	TransformRotate2DAlgorithm.getRotations()
TransformScale2DAlgorithm	TransformEqualizeDimensionsAlgorithm.getScale2DAlgorithm()
ScaleMode	TransformScale2DAlgorithm.getScaleMode()
ImageROITargetArea	MergeImagesAlgorithm.getTargetArea()
DefaultExpressionParameter	TransformSetHyperstackDimensionsAlgorithm.gettAxis()
OptionalAnnotationNameParameter	TileImage2DAlgorithm.getTileInsetXAnnotation()
OptionalAnnotationNameParameter	UnTileImage2DAlgorithm.getTileInsetXAnnotation()
OptionalAnnotationNameParameter	TileImage2DAlgorithm.getTileInsetYAnnotation()
OptionalAnnotationNameParameter	UnTileImage2DAlgorithm.getTileInsetYAnnotation()
OptionalAnnotationNameParameter	TileImage2DAlgorithm.getTileRealXAnnotation()
OptionalAnnotationNameParameter	UnTileImage2DAlgorithm.getTileRealXAnnotation()
OptionalAnnotationNameParameter	TileImage2DAlgorithm.getTileRealYAnnotation()
OptionalAnnotationNameParameter	UnTileImage2DAlgorithm.getTileRealYAnnotation()
int	TileImage2DAlgorithm.getTileSizeX()
int	TileImage2DAlgorithm.getTileSizeY()
OptionalAnnotationNameParameter	TileImage2DAlgorithm.getTileXAnnotation()
OptionalAnnotationNameParameter	TileImage2DAlgorithm.getTileYAnnotation()
HyperstackDimension	Warp2DAlgorithm.getVectorDimension()
WrapMode	Warp2DAlgorithm.getWrapMode()
DefaultExpressionParameter	CanvasEqualizer.getxAxis()
OptionalDefaultExpressionParameter	TransformScale2DAlgorithm.getxAxis()
NumericFunctionExpression	TransformEqualCanvasSize2DAlgorithm.getxAxis()
OptionalDefaultExpressionParameter	TransformScale3DAlgorithm.getxAxis()
NumericFunctionExpression	TransformExpandCanvas2DAlgorithm.getxAxis()
DefaultExpressionParameter	CanvasEqualizer.getyAxis()
OptionalDefaultExpressionParameter	TransformScale2DAlgorithm.getyAxis()
NumericFunctionExpression	TransformEqualCanvasSize2DAlgorithm.getyAxis()
OptionalDefaultExpressionParameter	TransformScale3DAlgorithm.getyAxis()
NumericFunctionExpression	TransformExpandCanvas2DAlgorithm.getyAxis()
DefaultExpressionParameter	TransformSetHyperstackDimensionsAlgorithm.getzAxis()
OptionalDefaultExpressionParameter	TransformScale3DAlgorithm.getzAxis()
boolean	Warp2DAlgorithm.isAbsoluteCoordinates()
boolean	TransformScale2DAlgorithm.isAvoidUnnecessaryScaling()
boolean	TransformEqualizeDimensionsAlgorithm.isCopySlices()
boolean	TransformSetHyperstackDimensionsAlgorithm.isCopySlices()
boolean	TransformEqualizeDimensionsAlgorithm.isEqualHyperstackDimensions()
boolean	TransformEqualizeDimensionsAlgorithm.isEqualWidthAndHeight()
boolean	TransformRotateFree2DAlgorithm.isExpandCanvas()
boolean	Warp2DAlgorithm.isInvertTransform()
boolean	TransformRotateFree2DAlgorithm.isOutputRoi()
boolean	Warp2DAlgorithm.isPolarCoordinates()
void	Warp2DAlgorithm.setAbsoluteCoordinates(boolean absoluteCoordinates)
void	TransformRotateFree2DAlgorithm.setAnchor(Anchor anchor)
void	CanvasEqualizer.setAnchor(Anchor anchor)
void	TransformScale2DAlgorithm.setAnchor(Anchor anchor)
void	TransformEqualCanvasSize2DAlgorithm.setAnchor(Anchor anchor)
void	TransformExpandCanvas2DAlgorithm.setAnchor(Anchor anchor)
void	TransformRotateFree2DAlgorithm.setAngle(double angle)
void	TileImage2DAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	TransformScale2DAlgorithm.setAvoidUnnecessaryScaling(boolean avoidUnnecessaryScaling)
void	TransformScale2DAlgorithm.setBackground(Color background)
void	TransformRotateFree2DAlgorithm.setBackgroundColor(Color backgroundColor)
void	CanvasEqualizer.setBackgroundColor(Color backgroundColor)
void	TransformEqualCanvasSize2DAlgorithm.setBackgroundColor(Color backgroundColor)
void	TransformExpandCanvas2DAlgorithm.setBackgroundColor(Color backgroundColor)
void	AddBorder2DAlgorithm.setBorderColor(DefaultExpressionParameter borderColor)
void	TileImage2DAlgorithm.setBorderMode(BorderMode borderMode)
void	AddBorder2DAlgorithm.setBorderMode(BorderMode borderMode)
void	TransformSetHyperstackDimensionsAlgorithm.setcAxis(DefaultExpressionParameter cAxis)
void	TransformEqualizeDimensionsAlgorithm.setCopySlices(boolean copySlices)
void	TransformSetHyperstackDimensionsAlgorithm.setCopySlices(boolean copySlices)
void	TransformEqualizeDimensionsAlgorithm.setEqualHyperstackDimensions(boolean equalHyperstackDimensions)
void	TransformEqualizeDimensionsAlgorithm.setEqualWidthAndHeight(boolean equalWidthAndHeight)
void	TransformRotateFree2DAlgorithm.setExpandCanvas(boolean expandCanvas)
void	TransformFlip2DAlgorithm.setFlipMode(TransformFlip2DAlgorithm.FlipMode flipMode)
void	TileImage2DAlgorithm.setImageHeightAnnotation(OptionalAnnotationNameParameter imageHeightAnnotation)
void	UnTileImage2DAlgorithm.setImageHeightAnnotation(OptionalAnnotationNameParameter imageHeightAnnotation)
void	TileImage2DAlgorithm.setImageWidthAnnotation(OptionalAnnotationNameParameter imageWidthAnnotation)
void	UnTileImage2DAlgorithm.setImageWidthAnnotation(OptionalAnnotationNameParameter imageWidthAnnotation)
void	TransformScale2DAlgorithm.setInterpolationMethod(InterpolationMethod interpolationMethod)
void	TransformScale3DAlgorithm.setInterpolationMethod(InterpolationMethod interpolationMethod)
void	Warp2DAlgorithm.setInvertTransform(boolean invertTransform)
void	AddBorder2DAlgorithm.setMarginBottom(DefaultExpressionParameter marginBottom)
void	AddBorder2DAlgorithm.setMarginLeft(DefaultExpressionParameter marginLeft)
void	AddBorder2DAlgorithm.setMarginRight(DefaultExpressionParameter marginRight)
void	AddBorder2DAlgorithm.setMarginTop(DefaultExpressionParameter marginTop)
void	Warp2DAlgorithm.setMultiplier(double multiplier)
void	TileImage2DAlgorithm.setNumTilesX(OptionalAnnotationNameParameter numTilesX)
void	TileImage2DAlgorithm.setNumTilesY(OptionalAnnotationNameParameter numTilesY)
void	TransformRotateFree2DAlgorithm.setOutputRoi(boolean outputRoi)
boolean	TileImage2DAlgorithm.setOverlapX(int overlapX)
void	TileImage2DAlgorithm.setOverlapY(int overlapY)
void	Warp2DAlgorithm.setPolarCoordinates(boolean polarCoordinates)
void	TransformCrop2DAlgorithm.setRoi(Margin roi)
void	TransformRotate2DAlgorithm.setRotationDirection(TransformRotate2DAlgorithm.RotationMode rotationDirection)
void	TransformRotate2DAlgorithm.setRotations(int rotations)
void	TransformScale2DAlgorithm.setScaleMode(ScaleMode scaleMode)
void	MergeImagesAlgorithm.setTargetArea(ImageROITargetArea targetArea)
void	TransformSetHyperstackDimensionsAlgorithm.settAxis(DefaultExpressionParameter tAxis)
void	TileImage2DAlgorithm.setTileInsetXAnnotation(OptionalAnnotationNameParameter tileInsetXAnnotation)
void	UnTileImage2DAlgorithm.setTileInsetXAnnotation(OptionalAnnotationNameParameter tileInsetXAnnotation)
void	TileImage2DAlgorithm.setTileInsetYAnnotation(OptionalAnnotationNameParameter tileInsetYAnnotation)
void	UnTileImage2DAlgorithm.setTileInsetYAnnotation(OptionalAnnotationNameParameter tileInsetYAnnotation)
void	TileImage2DAlgorithm.setTileRealXAnnotation(OptionalAnnotationNameParameter tileRealXAnnotation)
void	UnTileImage2DAlgorithm.setTileRealXAnnotation(OptionalAnnotationNameParameter tileRealXAnnotation)
void	TileImage2DAlgorithm.setTileRealYAnnotation(OptionalAnnotationNameParameter tileRealYAnnotation)
void	UnTileImage2DAlgorithm.setTileRealYAnnotation(OptionalAnnotationNameParameter tileRealYAnnotation)
void	TileImage2DAlgorithm.setTileSizeX(int tileSizeX)
void	TileImage2DAlgorithm.setTileSizeY(int tileSizeY)
void	TileImage2DAlgorithm.setTileXAnnotation(OptionalAnnotationNameParameter tileXAnnotation)
void	TileImage2DAlgorithm.setTileYAnnotation(OptionalAnnotationNameParameter tileYAnnotation)
void	Warp2DAlgorithm.setVectorDimension(HyperstackDimension vectorDimension)
void	Warp2DAlgorithm.setWrapMode(WrapMode wrapMode)
void	CanvasEqualizer.setxAxis(DefaultExpressionParameter xAxis)
void	TransformEqualCanvasSize2DAlgorithm.setxAxis(NumericFunctionExpression xAxis)
void	TransformExpandCanvas2DAlgorithm.setxAxis(NumericFunctionExpression xAxis)
void	TransformScale2DAlgorithm.setxAxis(OptionalDefaultExpressionParameter xAxis)
void	TransformScale3DAlgorithm.setxAxis(OptionalDefaultExpressionParameter xAxis)
void	CanvasEqualizer.setyAxis(DefaultExpressionParameter yAxis)
void	TransformEqualCanvasSize2DAlgorithm.setyAxis(NumericFunctionExpression yAxis)
void	TransformExpandCanvas2DAlgorithm.setyAxis(NumericFunctionExpression yAxis)
void	TransformScale2DAlgorithm.setyAxis(OptionalDefaultExpressionParameter yAxis)
void	TransformScale3DAlgorithm.setyAxis(OptionalDefaultExpressionParameter yAxis)
void	TransformSetHyperstackDimensionsAlgorithm.setzAxis(DefaultExpressionParameter zAxis)
void	TransformScale3DAlgorithm.setzAxis(OptionalDefaultExpressionParameter zAxis)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejalgorithms.utils

Methods in org.hkijena.jipipe.extensions.imagejalgorithms.utils with annotations of type JIPipeParameter

Modifier and Type	Method and Description
ImageROITargetArea	SimpleImageAndRoiIteratingAlgorithm.getTargetArea()
void	SimpleImageAndRoiIteratingAlgorithm.setTargetArea(ImageROITargetArea targetArea)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejdatatypes

Methods in org.hkijena.jipipe.extensions.imagejdatatypes with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OMETIFFCompression	ImageJDataTypesSettings.getBioFormatsCompression()
boolean	ImageJDataTypesSettings.isSaveRGBWithImageJ()
boolean	ImageJDataTypesSettings.isUseBioFormats()
void	ImageJDataTypesSettings.setBioFormatsCompression(OMETIFFCompression bioFormatsCompression)
void	ImageJDataTypesSettings.setSaveRGBWithImageJ(boolean saveRGBWithImageJ)
void	ImageJDataTypesSettings.setUseBioFormats(boolean useBioFormats)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms

Methods in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalAnnotationNameParameter	ImagePropertiesToAnnotationAlgorithm.getBitDepthAnnotation()
ImageJCalibrationMode	DisplayRangeCalibrationAlgorithm.getCalibrationMode()
OptionalAnnotationNameParameter	ImagePropertiesToAnnotationAlgorithm.getChannelSizeAnnotation()
OptionalAnnotationNameParameter	ImagePropertiesToAnnotationAlgorithm.getColorSpaceAnnotation()
double	DisplayRangeCalibrationAlgorithm.getCustomMax()
double	DisplayRangeCalibrationAlgorithm.getCustomMin()
JIPipeDataByMetadataExporter	BioFormatsExporter.getExporter()
OMEExporterSettings	SetBioFormatsExporterSettings.getExporterSettings()
OMEExporterSettings	BioFormatsExporter.getExporterSettings()
OptionalAnnotationNameParameter	ImagePropertiesToAnnotationAlgorithm.getFramesSizeAnnotation()
OptionalAnnotationNameParameter	ImagePropertiesToAnnotationAlgorithm.getHeightAnnotation()
OptionalAnnotationNameParameter	ImagePropertiesToAnnotationAlgorithm.getImageTypeAnnotation()
Path	BioFormatsExporter.getOutputDirectory()
JIPipeDataInfoRef	ImageTypeConverter.getOutputType()
OptionalAnnotationNameParameter	ImagePropertiesToAnnotationAlgorithm.getPhysicalDimensionTAnnotation()
OptionalAnnotationNameParameter	ImagePropertiesToAnnotationAlgorithm.getPhysicalDimensionValueAnnotation()
OptionalAnnotationNameParameter	ImagePropertiesToAnnotationAlgorithm.getPhysicalDimensionXAnnotation()
OptionalAnnotationNameParameter	ImagePropertiesToAnnotationAlgorithm.getPhysicalDimensionYAnnotation()
OptionalAnnotationNameParameter	ImagePropertiesToAnnotationAlgorithm.getPhysicalDimensionZAnnotation()
OptionalAnnotationNameParameter	ImagePropertiesToAnnotationAlgorithm.getPlaneNumberAnnotation()
OptionalAnnotationNameParameter	ImagePropertiesToAnnotationAlgorithm.getStackSizeAnnotation()
OptionalAnnotationNameParameter	ImagePropertiesToAnnotationAlgorithm.getTitleAnnotation()
OptionalAnnotationNameParameter	ImagePropertiesToAnnotationAlgorithm.getWidthAnnotation()
boolean	DisplayRangeCalibrationAlgorithm.isApplyToAllPlanes()
boolean	DisplayRangeCalibrationAlgorithm.isDuplicateImage()
void	DisplayRangeCalibrationAlgorithm.setApplyToAllPlanes(boolean applyToAllPlanes)
void	ImagePropertiesToAnnotationAlgorithm.setBitDepthAnnotation(OptionalAnnotationNameParameter bitDepthAnnotation)
void	DisplayRangeCalibrationAlgorithm.setCalibrationMode(ImageJCalibrationMode calibrationMode)
void	ImagePropertiesToAnnotationAlgorithm.setChannelSizeAnnotation(OptionalAnnotationNameParameter channelSizeAnnotation)
void	ImagePropertiesToAnnotationAlgorithm.setColorSpaceAnnotation(OptionalAnnotationNameParameter colorSpaceAnnotation)
void	DisplayRangeCalibrationAlgorithm.setCustomMax(double customMax)
void	DisplayRangeCalibrationAlgorithm.setCustomMin(double customMin)
void	DisplayRangeCalibrationAlgorithm.setDuplicateImage(boolean duplicateImage)
void	ImagePropertiesToAnnotationAlgorithm.setFramesSizeAnnotation(OptionalAnnotationNameParameter framesSizeAnnotation)
void	ImagePropertiesToAnnotationAlgorithm.setHeightAnnotation(OptionalAnnotationNameParameter heightAnnotation)
void	ImagePropertiesToAnnotationAlgorithm.setImageTypeAnnotation(OptionalAnnotationNameParameter imageTypeAnnotation)
void	BioFormatsExporter.setOutputDirectory(Path outputDirectory)
void	ImageTypeConverter.setOutputType(JIPipeDataInfoRef outputType)
void	ImagePropertiesToAnnotationAlgorithm.setPhysicalDimensionTAnnotation(OptionalAnnotationNameParameter physicalDimensionTAnnotation)
void	ImagePropertiesToAnnotationAlgorithm.setPhysicalDimensionValueAnnotation(OptionalAnnotationNameParameter physicalDimensionValueAnnotation)
void	ImagePropertiesToAnnotationAlgorithm.setPhysicalDimensionXAnnotation(OptionalAnnotationNameParameter physicalDimensionXAnnotation)
void	ImagePropertiesToAnnotationAlgorithm.setPhysicalDimensionYAnnotation(OptionalAnnotationNameParameter physicalDimensionYAnnotation)
void	ImagePropertiesToAnnotationAlgorithm.setPhysicalDimensionZAnnotation(OptionalAnnotationNameParameter physicalDimensionZAnnotation)
void	ImagePropertiesToAnnotationAlgorithm.setPlaneNumberAnnotation(OptionalAnnotationNameParameter planeNumberAnnotation)
void	ImagePropertiesToAnnotationAlgorithm.setStackSizeAnnotation(OptionalAnnotationNameParameter stackSizeAnnotation)
void	ImagePropertiesToAnnotationAlgorithm.setTitleAnnotation(OptionalAnnotationNameParameter titleAnnotation)
void	ImagePropertiesToAnnotationAlgorithm.setWidthAnnotation(OptionalAnnotationNameParameter widthAnnotation)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.color

Methods in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.color with annotations of type JIPipeParameter

Modifier and Type	Method and Description
boolean	ColorSpaceConverterAlgorithm.isReinterpret()
void	ColorSpaceConverterAlgorithm.setReinterpret(boolean reinterpret)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.datasources

Methods in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.datasources with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OMEColorMode	BioFormatsImporter.getColorMode()
RectangleList	BioFormatsImporter.getCropRegions()
ResultsTableFromFile.FileFormat	ResultsTableFromFile.getFileFormat()
JIPipeDataInfoRef	ImagePlusFromFile.getGeneratedImageType()
OptionalAnnotationNameParameter	BioFormatsImporter.getSeriesAnnotation()
IntegerList	BioFormatsImporter.getSeriesToImport()
OptionalAnnotationNameParameter	ResultsTableFromFile.getSheetNameAnnotation()
StringList	ResultsTableFromFile.getSheets()
ome.xml.model.enums.DimensionOrder	BioFormatsImporter.getStackOrder()
OptionalAnnotationNameParameter	BioFormatsImporter.getTitleAnnotation()
OptionalAnnotationNameParameter	ImagePlusFromFile.getTitleAnnotation()
boolean	BioFormatsImporter.isAutoScale()
boolean	BioFormatsImporter.isConcatenate()
boolean	BioFormatsImporter.isCrop()
boolean	ImagePlusFromFile.isDeferLoading()
boolean	BioFormatsImporter.isExtractRois()
boolean	ResultsTableFromFile.isIgnoreMissingSheets()
boolean	BioFormatsImporter.isOpenAllSeries()
boolean	ImagePlusFromFile.isRemoveLut()
boolean	ImagePlusFromFile.isRemoveOverlay()
boolean	BioFormatsImporter.isSplitChannels()
boolean	BioFormatsImporter.isSplitFocalPlanes()
boolean	BioFormatsImporter.isSplitTimePoints()
boolean	BioFormatsImporter.isStitchTiles()
boolean	BioFormatsImporter.isSwapDimensions()
void	BioFormatsImporter.setAutoScale(boolean autoScale)
void	BioFormatsImporter.setColorMode(OMEColorMode colorMode)
void	BioFormatsImporter.setConcatenate(boolean concatenate)
void	BioFormatsImporter.setCrop(boolean crop)
void	BioFormatsImporter.setCropRegions(RectangleList cropRegions)
void	ImagePlusFromFile.setDeferLoading(boolean deferLoading)
void	BioFormatsImporter.setExtractRois(boolean extractRois)
void	ResultsTableFromFile.setFileFormat(ResultsTableFromFile.FileFormat fileFormat)
void	ImagePlusFromFile.setGeneratedImageType(JIPipeDataInfoRef generatedImageType)
void	ResultsTableFromFile.setIgnoreMissingSheets(boolean ignoreMissingSheets)
void	BioFormatsImporter.setOpenAllSeries(boolean openAllSeries)
void	ImagePlusFromFile.setRemoveLut(boolean removeLut)
void	ImagePlusFromFile.setRemoveOverlay(boolean removeOverlay)
void	BioFormatsImporter.setSeriesAnnotation(OptionalAnnotationNameParameter seriesAnnotation)
void	BioFormatsImporter.setSeriesToImport(IntegerList seriesToImport)
void	ResultsTableFromFile.setSheetNameAnnotation(OptionalAnnotationNameParameter sheetNameAnnotation)
void	ResultsTableFromFile.setSheets(StringList sheets)
void	BioFormatsImporter.setSplitChannels(boolean splitChannels)
void	BioFormatsImporter.setSplitFocalPlanes(boolean splitFocalPlanes)
void	BioFormatsImporter.setSplitTimePoints(boolean splitTimePoints)
void	BioFormatsImporter.setStackOrder(ome.xml.model.enums.DimensionOrder stackOrder)
void	BioFormatsImporter.setStitchTiles(boolean stitchTiles)
void	BioFormatsImporter.setSwapDimensions(boolean swapDimensions)
void	BioFormatsImporter.setTitleAnnotation(OptionalAnnotationNameParameter titleAnnotation)
void	ImagePlusFromFile.setTitleAnnotation(OptionalAnnotationNameParameter titleAnnotation)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejdatatypes.parameters

Methods in org.hkijena.jipipe.extensions.imagejdatatypes.parameters with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OMETIFFCompression	OMEExporterSettings.getCompression()
ome.xml.model.enums.DimensionOrder	OMEExporterSettings.getDimensionOrder()
boolean	OMEExporterSettings.isNoLUT()
boolean	OMEExporterSettings.isPadded()
boolean	OMEExporterSettings.isSaveROI()
boolean	OMEExporterSettings.isSplitC()
boolean	OMEExporterSettings.isSplitT()
boolean	OMEExporterSettings.isSplitZ()
void	OMEExporterSettings.setCompression(OMETIFFCompression compression)
void	OMEExporterSettings.setDimensionOrder(ome.xml.model.enums.DimensionOrder dimensionOrder)
void	OMEExporterSettings.setNoLUT(boolean noLUT)
void	OMEExporterSettings.setPadded(boolean padded)
void	OMEExporterSettings.setSaveROI(boolean saveROI)
void	OMEExporterSettings.setSplitC(boolean splitC)
void	OMEExporterSettings.setSplitT(boolean splitT)
void	OMEExporterSettings.setSplitZ(boolean splitZ)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejdatatypes.settings

Methods in org.hkijena.jipipe.extensions.imagejdatatypes.settings with annotations of type JIPipeParameter

Modifier and Type	Method and Description
RoiDrawer	ImageViewerUIRoiDisplaySettings.getRoiDrawer()
boolean	ImageViewerUIRoiDisplaySettings.isRenderROIAsOverlay()
boolean	ImageViewerUIRoiDisplaySettings.isShowROI()
void	ImageViewerUIRoiDisplaySettings.setRenderROIAsOverlay(boolean renderROIAsOverlay)
void	ImageViewerUIRoiDisplaySettings.setShowROI(boolean showROI)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imagejdatatypes.util

Methods in org.hkijena.jipipe.extensions.imagejdatatypes.util with annotations of type JIPipeParameter

Modifier and Type	Method and Description
boolean	ROIEditor.getCenterScale()
ROIElementDrawingMode	RoiDrawer.getDrawFilledOutlineMode()
RoiLabel	RoiDrawer.getDrawnLabel()
ROIElementDrawingMode	RoiDrawer.getDrawOutlineMode()
Color	ROIEditor.getFillColor()
OptionalColorParameter	RoiDrawer.getLabelBackground()
FontFamilyParameter	RoiDrawer.getLabelFontFamily()
Color	RoiDrawer.getLabelForeground()
int	RoiDrawer.getLabelSize()
Color	ROIEditor.getLineColor()
double	ROIEditor.getLineWidth()
double	RoiDrawer.getOpacity()
OptionalColorParameter	RoiDrawer.getOverrideFillColor()
OptionalColorParameter	RoiDrawer.getOverrideLineColor()
OptionalDoubleParameter	RoiDrawer.getOverrideLineWidth()
int	ROIEditor.getPositionC()
int	ROIEditor.getPositionT()
double	ROIEditor.getPositionX()
double	ROIEditor.getPositionY()
int	ROIEditor.getPositionZ()
String	ROIEditor.getRoiName()
double	ROIEditor.getScaleX()
double	ROIEditor.getScaleY()
boolean	RoiDrawer.isDrawOver()
boolean	RoiDrawer.isIgnoreC()
boolean	RoiDrawer.isIgnoreT()
boolean	RoiDrawer.isIgnoreZ()
void	ROIEditor.setCenterScale(boolean centerScale)
void	RoiDrawer.setDrawFilledOutlineMode(ROIElementDrawingMode drawFilledOutlineMode)
void	RoiDrawer.setDrawnLabel(RoiLabel drawnLabel)
void	RoiDrawer.setDrawOutlineMode(ROIElementDrawingMode drawOutlineMode)
void	RoiDrawer.setDrawOver(boolean drawOver)
void	ROIEditor.setFillColor(Color fillColor)
void	RoiDrawer.setIgnoreC(boolean ignoreC)
void	RoiDrawer.setIgnoreT(boolean ignoreT)
void	RoiDrawer.setIgnoreZ(boolean ignoreZ)
void	RoiDrawer.setLabelBackground(OptionalColorParameter labelBackground)
void	RoiDrawer.setLabelFontFamily(FontFamilyParameter labelFontFamily)
void	RoiDrawer.setLabelForeground(Color labelForeground)
boolean	RoiDrawer.setLabelSize(int labelSize)
void	ROIEditor.setLineColor(Color lineColor)
void	ROIEditor.setLineWidth(double lineWidth)
boolean	RoiDrawer.setOpacity(double opacity)
void	RoiDrawer.setOverrideFillColor(OptionalColorParameter overrideFillColor)
void	RoiDrawer.setOverrideLineColor(OptionalColorParameter overrideLineColor)
void	RoiDrawer.setOverrideLineWidth(OptionalDoubleParameter overrideLineWidth)
void	ROIEditor.setPositionC(int positionC)
void	ROIEditor.setPositionT(int positionT)
void	ROIEditor.setPositionX(double positionX)
void	ROIEditor.setPositionY(double positionY)
void	ROIEditor.setPositionZ(int positionZ)
void	ROIEditor.setRoiName(String roiName)
void	ROIEditor.setScaleX(double scaleX)
void	ROIEditor.setScaleY(double scaleY)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imageviewer.plugins.maskdrawer

Methods in org.hkijena.jipipe.extensions.imageviewer.plugins.maskdrawer with annotations of type JIPipeParameter

Modifier and Type	Method and Description
ImageStatisticsSetParameter	MeasurementDrawerPlugin.Settings.getStatistics()
boolean	MeasurementDrawerPlugin.Settings.isMeasureInPhysicalUnits()
void	MeasurementDrawerPlugin.Settings.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	MeasurementDrawerPlugin.Settings.setStatistics(ImageStatisticsSetParameter statistics)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.imageviewer.plugins.roimanager

Methods in org.hkijena.jipipe.extensions.imageviewer.plugins.roimanager with annotations of type JIPipeParameter

Modifier and Type	Method and Description
ImageStatisticsSetParameter	MeasurementSettings.getStatistics()
boolean	MeasurementSettings.isMeasureInPhysicalUnits()
void	MeasurementSettings.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	MeasurementSettings.setStatistics(ImageStatisticsSetParameter statistics)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.multiparameters.nodes

Methods in org.hkijena.jipipe.extensions.multiparameters.nodes with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeTextAnnotationMergeMode	ParametersToAnnotationsAlgorithm.getAnnotationMergeStrategy()
ParameterCollectionList	GenerateParametersFromExpressionAlgorithm.getColumns()
CustomExpressionVariablesParameter	GenerateParametersFromExpressionAlgorithm.getCustomVariables()
JIPipeDynamicParameterCollection	AnnotationsToParametersAlgorithm.getExtractedParameters()
String	GenerateParametersFromExpressionAlgorithm.Column.getKey()
OptionalAnnotationNameParameter	ExtractParametersAlgorithm.getNodeAliasIDAnnotation()
OptionalAnnotationNameParameter	ExtractParametersAlgorithm.getNodeNameAnnotation()
OptionalAnnotationNameParameter	ExtractParametersAlgorithm.getNodeUUIDAnnotation()
StringQueryExpression	ExtractParametersAlgorithm.getParameterKeyFilter()
GeneratedParameters	DefineParametersAlgorithm.getParameters()
ParameterTable	DefineParametersTableAlgorithm.getParameterTable()
JIPipeParameterTypeInfoRef	GenerateParametersFromExpressionAlgorithm.Column.getType()
DefaultExpressionParameter	GenerateParametersFromExpressionAlgorithm.Column.getValues()
boolean	AnnotationsToParametersAlgorithm.isIgnoreInvalidValues()
boolean	GenerateParametersFromExpressionAlgorithm.Column.isValuesAreJson()
void	ParametersToAnnotationsAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	GenerateParametersFromExpressionAlgorithm.setColumns(ParameterCollectionList columns)
void	AnnotationsToParametersAlgorithm.setIgnoreInvalidValues(boolean ignoreInvalidValues)
void	GenerateParametersFromExpressionAlgorithm.Column.setKey(String key)
void	ExtractParametersAlgorithm.setNodeAliasIDAnnotation(OptionalAnnotationNameParameter nodeAliasIDAnnotation)
void	ExtractParametersAlgorithm.setNodeNameAnnotation(OptionalAnnotationNameParameter nodeNameAnnotation)
void	ExtractParametersAlgorithm.setNodeUUIDAnnotation(OptionalAnnotationNameParameter nodeUUIDAnnotation)
void	ExtractParametersAlgorithm.setParameterKeyFilter(StringQueryExpression parameterKeyFilter)
void	DefineParametersTableAlgorithm.setParameterTable(ParameterTable parameterTable)
void	GenerateParametersFromExpressionAlgorithm.Column.setType(JIPipeParameterTypeInfoRef type)
void	GenerateParametersFromExpressionAlgorithm.Column.setValues(DefaultExpressionParameter values)
void	GenerateParametersFromExpressionAlgorithm.Column.setValuesAreJson(boolean valuesAreJson)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.omero

Methods in org.hkijena.jipipe.extensions.omero with annotations of type JIPipeParameter

Modifier and Type	Method and Description
PasswordParameter	OMEROSettings.getDefaultPassword()
String	OMEROSettings.getDefaultServer()
String	OMEROSettings.getDefaultUserName()
String	OMEROSettings.getEmail()
PasswordParameter	OMEROCredentials.getPassword()
String	OMEROCredentials.getServer()
String	OMEROCredentials.getUserName()
void	OMEROSettings.setDefaultPassword(PasswordParameter defaultPassword)
void	OMEROSettings.setDefaultServer(String defaultServer)
void	OMEROSettings.setDefaultUserName(String defaultUserName)
void	OMEROSettings.setEmail(String email)
void	OMEROCredentials.setPassword(PasswordParameter password)
void	OMEROCredentials.setServer(String server)
void	OMEROCredentials.setUserName(String userName)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.omero.algorithms

Methods in org.hkijena.jipipe.extensions.omero.algorithms with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OMEColorMode	DownloadOMEROImageAlgorithm.getColorMode()
OMEROCredentials	UploadOMEROImageAlgorithm.getCredentials()
OMEROCredentials	DownloadOMEROTableAlgorithm.getCredentials()
OMEROCredentials	UploadOMEROTableAlgorithm.getCredentials()
OMEROCredentials	DownloadOMEROImageAlgorithm.getCredentials()
RectangleList	DownloadOMEROImageAlgorithm.getCropRegions()
JIPipeDataByMetadataExporter	UploadOMEROImageAlgorithm.getExporter()
JIPipeDataByMetadataExporter	UploadOMEROTableAlgorithm.getExporter()
OptionalStringParameter	DownloadOMEROTableAlgorithm.getFileNameAnnotation()
ome.xml.model.enums.DimensionOrder	DownloadOMEROImageAlgorithm.getStackOrder()
OptionalStringParameter	DownloadOMEROTableAlgorithm.getTagAnnotation()
OptionalStringParameter	DownloadOMEROImageAlgorithm.getTagAnnotation()
OptionalAnnotationNameParameter	DownloadOMEROImageAlgorithm.getTitleAnnotation()
AnnotationQueryExpression	UploadOMEROImageAlgorithm.getUploadedAnnotationsFilter()
boolean	DownloadOMEROTableAlgorithm.isAddKeyValuePairsAsAnnotations()
boolean	DownloadOMEROImageAlgorithm.isAddKeyValuePairsAsAnnotations()
boolean	DownloadOMEROImageAlgorithm.isAutoScale()
boolean	DownloadOMEROImageAlgorithm.isConcatenate()
boolean	DownloadOMEROImageAlgorithm.isCrop()
boolean	DownloadOMEROImageAlgorithm.isExtractRois()
boolean	DownloadOMEROImageAlgorithm.isSplitChannels()
boolean	DownloadOMEROImageAlgorithm.isSplitFocalPlanes()
boolean	DownloadOMEROImageAlgorithm.isSplitTimePoints()
boolean	DownloadOMEROImageAlgorithm.isStitchTiles()
boolean	DownloadOMEROImageAlgorithm.isSwapDimensions()
boolean	UploadOMEROImageAlgorithm.isUploadAnnotations()
void	DownloadOMEROTableAlgorithm.setAddKeyValuePairsAsAnnotations(boolean addKeyValuePairsAsAnnotations)
void	DownloadOMEROImageAlgorithm.setAddKeyValuePairsAsAnnotations(boolean addKeyValuePairsAsAnnotations)
void	DownloadOMEROImageAlgorithm.setAutoScale(boolean autoScale)
void	DownloadOMEROImageAlgorithm.setColorMode(OMEColorMode colorMode)
void	DownloadOMEROImageAlgorithm.setConcatenate(boolean concatenate)
void	DownloadOMEROImageAlgorithm.setCrop(boolean crop)
void	DownloadOMEROImageAlgorithm.setCropRegions(RectangleList cropRegions)
void	DownloadOMEROImageAlgorithm.setExtractRois(boolean extractRois)
void	DownloadOMEROTableAlgorithm.setFileNameAnnotation(OptionalStringParameter fileNameAnnotation)
void	DownloadOMEROImageAlgorithm.setSplitChannels(boolean splitChannels)
void	DownloadOMEROImageAlgorithm.setSplitFocalPlanes(boolean splitFocalPlanes)
void	DownloadOMEROImageAlgorithm.setSplitTimePoints(boolean splitTimePoints)
void	DownloadOMEROImageAlgorithm.setStackOrder(ome.xml.model.enums.DimensionOrder stackOrder)
void	DownloadOMEROImageAlgorithm.setStitchTiles(boolean stitchTiles)
void	DownloadOMEROImageAlgorithm.setSwapDimensions(boolean swapDimensions)
void	DownloadOMEROTableAlgorithm.setTagAnnotation(OptionalStringParameter tagAnnotation)
void	DownloadOMEROImageAlgorithm.setTagAnnotation(OptionalStringParameter tagAnnotation)
void	DownloadOMEROImageAlgorithm.setTitleAnnotation(OptionalAnnotationNameParameter titleAnnotation)
void	UploadOMEROImageAlgorithm.setUploadAnnotations(boolean uploadAnnotations)
void	UploadOMEROImageAlgorithm.setUploadedAnnotationsFilter(AnnotationQueryExpression uploadedAnnotationsFilter)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.omero.datasources

Methods in org.hkijena.jipipe.extensions.omero.datasources with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OMEROCredentials	OMEROFindGroupAlgorithm.getCredentials()
OMEROCredentials	OMEROFindDatasetAlgorithm.getCredentials()
OMEROCredentials	OMEROFindProjectAlgorithm.getCredentials()
OMEROCredentials	OMEROFindImageAlgorithm.getCredentials()
LongList	OMERODatasetReferenceDataSource.getDatasetIds()
OptionalAnnotationNameParameter	OMEROFindDatasetAlgorithm.getDatasetNameAnnotation()
OptionalAnnotationNameParameter	OMEROFindImageAlgorithm.getDatasetNameAnnotation()
StringQueryExpression	OMEROFindDatasetAlgorithm.getDatasetNameFilters()
LongList	OMEROGroupReferenceDataSource.getGroupIds()
OptionalAnnotationNameParameter	OMEROFindGroupAlgorithm.getGroupNameAnnotation()
StringQueryExpression	OMEROFindGroupAlgorithm.getGroupNameFilters()
LongList	OMEROImageReferenceDataSource.getImageIds()
OptionalAnnotationNameParameter	OMEROFindImageAlgorithm.getImageNameAnnotation()
StringQueryExpression	OMEROFindImageAlgorithm.getImageNameFilters()
StringMapQueryExpression	OMEROFindDatasetAlgorithm.getKeyValuePairFilters()
StringMapQueryExpression	OMEROFindProjectAlgorithm.getKeyValuePairFilters()
StringMapQueryExpression	OMEROFindImageAlgorithm.getKeyValuePairFilters()
LongList	OMEROProjectReferenceDataSource.getProjectIds()
OptionalAnnotationNameParameter	OMEROFindDatasetAlgorithm.getProjectNameAnnotation()
OptionalAnnotationNameParameter	OMEROFindProjectAlgorithm.getProjectNameAnnotation()
OptionalAnnotationNameParameter	OMEROFindImageAlgorithm.getProjectNameAnnotation()
StringQueryExpression	OMEROFindProjectAlgorithm.getProjectNameFilters()
OptionalAnnotationNameParameter	OMEROFindDatasetAlgorithm.getTagAnnotation()
OptionalAnnotationNameParameter	OMEROFindProjectAlgorithm.getTagAnnotation()
OptionalAnnotationNameParameter	OMEROFindImageAlgorithm.getTagAnnotation()
StringMapQueryExpression	OMEROFindDatasetAlgorithm.getTagFilters()
StringMapQueryExpression	OMEROFindProjectAlgorithm.getTagFilters()
StringMapQueryExpression	OMEROFindImageAlgorithm.getTagFilters()
boolean	OMEROFindDatasetAlgorithm.isAddKeyValuePairsAsAnnotations()
boolean	OMEROFindProjectAlgorithm.isAddKeyValuePairsAsAnnotations()
boolean	OMEROFindImageAlgorithm.isAddKeyValuePairsAsAnnotations()
void	OMEROFindDatasetAlgorithm.setAddKeyValuePairsAsAnnotations(boolean addKeyValuePairsAsAnnotations)
void	OMEROFindProjectAlgorithm.setAddKeyValuePairsAsAnnotations(boolean addKeyValuePairsAsAnnotations)
void	OMEROFindImageAlgorithm.setAddKeyValuePairsAsAnnotations(boolean addKeyValuePairsAsAnnotations)
void	OMERODatasetReferenceDataSource.setDatasetIds(LongList datasetIds)
void	OMEROFindDatasetAlgorithm.setDatasetNameAnnotation(OptionalAnnotationNameParameter datasetNameAnnotation)
void	OMEROFindImageAlgorithm.setDatasetNameAnnotation(OptionalAnnotationNameParameter datasetNameAnnotation)
void	OMEROFindDatasetAlgorithm.setDatasetNameFilters(StringQueryExpression datasetNameFilters)
void	OMEROGroupReferenceDataSource.setGroupIds(LongList groupIds)
void	OMEROFindGroupAlgorithm.setGroupNameAnnotation(OptionalAnnotationNameParameter groupNameAnnotation)
void	OMEROFindGroupAlgorithm.setGroupNameFilters(StringQueryExpression groupNameFilters)
void	OMEROImageReferenceDataSource.setImageIds(LongList imageIds)
void	OMEROFindImageAlgorithm.setImageNameAnnotation(OptionalAnnotationNameParameter imageNameAnnotation)
void	OMEROFindImageAlgorithm.setImageNameFilters(StringQueryExpression imageNameFilters)
void	OMEROFindDatasetAlgorithm.setKeyValuePairFilters(StringMapQueryExpression keyValuePairFilters)
void	OMEROFindProjectAlgorithm.setKeyValuePairFilters(StringMapQueryExpression keyValuePairFilters)
void	OMEROFindImageAlgorithm.setKeyValuePairFilters(StringMapQueryExpression keyValuePairFilters)
void	OMEROProjectReferenceDataSource.setProjectIds(LongList projectIds)
void	OMEROFindDatasetAlgorithm.setProjectNameAnnotation(OptionalAnnotationNameParameter projectNameAnnotation)
void	OMEROFindProjectAlgorithm.setProjectNameAnnotation(OptionalAnnotationNameParameter projectNameAnnotation)
void	OMEROFindImageAlgorithm.setProjectNameAnnotation(OptionalAnnotationNameParameter projectNameAnnotation)
void	OMEROFindProjectAlgorithm.setProjectNameFilters(StringQueryExpression projectNameFilters)
void	OMEROFindDatasetAlgorithm.setTagAnnotation(OptionalAnnotationNameParameter tagAnnotation)
void	OMEROFindProjectAlgorithm.setTagAnnotation(OptionalAnnotationNameParameter tagAnnotation)
void	OMEROFindImageAlgorithm.setTagAnnotation(OptionalAnnotationNameParameter tagAnnotation)
void	OMEROFindDatasetAlgorithm.setTagFilters(StringMapQueryExpression tagFilters)
void	OMEROFindProjectAlgorithm.setTagFilters(StringMapQueryExpression tagFilters)
void	OMEROFindImageAlgorithm.setTagFilters(StringMapQueryExpression tagFilters)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.omnipose

Methods in org.hkijena.jipipe.extensions.omnipose with annotations of type JIPipeParameter

Modifier and Type	Method and Description
StringList	OmniposeSettings.getEasyInstallerRepositories()
OptionalPythonEnvironment	OmniposeSettings.getOverridePythonEnvironment()
void	OmniposeSettings.setEasyInstallerRepositories(StringList easyInstallerRepositories)
void	OmniposeSettings.setOverridePythonEnvironment(OptionalPythonEnvironment overridePythonEnvironment)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.omnipose.algorithms

Methods in org.hkijena.jipipe.extensions.omnipose.algorithms with annotations of type JIPipeParameter

Modifier and Type	Method and Description
CellposeChannelSettings	OmniposeAlgorithm.getChannelSettings()
CellposeChannelSettings	OmniposeTrainingAlgorithm.getChannelSettings()
OptionalDoubleParameter	OmniposeAlgorithm.getDiameter()
OptionalDoubleParameter	OmniposeTrainingAlgorithm.getDiameter()
OptionalAnnotationNameParameter	OmniposeAlgorithm.getDiameterAnnotation()
OmniposeSegmentationTweaksSettings	OmniposeAlgorithm.getEnhancementParameters()
CellposeGPUSettings	OmniposeAlgorithm.getGpuSettings()
CellposeGPUSettings	OmniposeTrainingAlgorithm.getGpuSettings()
DataAnnotationQueryExpression	OmniposeTrainingAlgorithm.getLabelDataAnnotation()
OmniposeModel	OmniposeAlgorithm.getModel()
int	OmniposeTrainingAlgorithm.getNumEpochs()
OptionalPythonEnvironment	OmniposeAlgorithm.getOverrideEnvironment()
OptionalPythonEnvironment	OmniposeTrainingAlgorithm.getOverrideEnvironment()
OmniposePretrainedModel	OmniposeTrainingAlgorithm.getPretrainedModel()
CellposeSegmentationOutputSettings	OmniposeAlgorithm.getSegmentationOutputSettings()
OmniposeSegmentationThresholdSettings	OmniposeAlgorithm.getThresholdParameters()
OmniposeTrainingTweaksSettings	OmniposeTrainingAlgorithm.getTweaksSettings()
boolean	OmniposeAlgorithm.isCleanUpAfterwards()
boolean	OmniposeTrainingAlgorithm.isCleanUpAfterwards()
boolean	OmniposeAlgorithm.isEnable3DSegmentation()
boolean	OmniposeTrainingAlgorithm.isEnable3DSegmentation()
boolean	OmniposeTrainingAlgorithm.isTrainSizeModel()
void	OmniposeAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards)
void	OmniposeTrainingAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards)
void	OmniposeAlgorithm.setDiameter(OptionalDoubleParameter diameter)
void	OmniposeTrainingAlgorithm.setDiameter(OptionalDoubleParameter diameter)
void	OmniposeAlgorithm.setDiameterAnnotation(OptionalAnnotationNameParameter diameterAnnotation)
void	OmniposeAlgorithm.setEnable3DSegmentation(boolean enable3DSegmentation)
void	OmniposeTrainingAlgorithm.setEnable3DSegmentation(boolean enable3DSegmentation)
void	OmniposeTrainingAlgorithm.setLabelDataAnnotation(DataAnnotationQueryExpression labelDataAnnotation)
void	OmniposeAlgorithm.setModel(OmniposeModel model)
void	OmniposeTrainingAlgorithm.setNumEpochs(int numEpochs)
void	OmniposeAlgorithm.setOverrideEnvironment(OptionalPythonEnvironment overrideEnvironment)
void	OmniposeTrainingAlgorithm.setOverrideEnvironment(OptionalPythonEnvironment overrideEnvironment)
void	OmniposeTrainingAlgorithm.setPretrainedModel(OmniposePretrainedModel pretrainedModel)
void	OmniposeTrainingAlgorithm.setTrainSizeModel(boolean trainSizeModel)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.omnipose.parameters

Methods in org.hkijena.jipipe.extensions.omnipose.parameters with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalDoubleParameter	OmniposeSegmentationTweaksSettings.getAnisotropy()
int	OmniposeTrainingTweaksSettings.getBatchSize()
double	OmniposeSegmentationThresholdSettings.getDiamThreshold()
double	OmniposeSegmentationThresholdSettings.getFlowThreshold()
double	OmniposeTrainingTweaksSettings.getLearningRate()
double	OmniposeSegmentationThresholdSettings.getMaskThreshold()
int	OmniposeTrainingTweaksSettings.getMinTrainMasks()
OptionalDoubleParameter	OmniposeSegmentationThresholdSettings.getStitchThreshold()
boolean	OmniposeSegmentationTweaksSettings.isCluster()
boolean	OmniposeTrainingTweaksSettings.isConcatenateDownsampledLayers()
boolean	OmniposeSegmentationTweaksSettings.isDisableResample()
boolean	OmniposeSegmentationThresholdSettings.isExcludeOnEdges()
boolean	OmniposeSegmentationTweaksSettings.isFastMode()
boolean	OmniposeTrainingTweaksSettings.isGenerateConnectedComponents()
boolean	OmniposeSegmentationTweaksSettings.isInterpolate()
boolean	OmniposeSegmentationTweaksSettings.isNetAverage()
boolean	OmniposeTrainingTweaksSettings.isUseResidualConnections()
boolean	OmniposeTrainingTweaksSettings.isUseStyleVector()
void	OmniposeSegmentationTweaksSettings.setAnisotropy(OptionalDoubleParameter anisotropy)
void	OmniposeTrainingTweaksSettings.setBatchSize(int batchSize)
void	OmniposeSegmentationTweaksSettings.setCluster(boolean cluster)
void	OmniposeTrainingTweaksSettings.setConcatenateDownsampledLayers(boolean concatenateDownsampledLayers)
void	OmniposeSegmentationThresholdSettings.setDiamThreshold(double diamThreshold)
void	OmniposeSegmentationTweaksSettings.setDisableResample(boolean disableResample)
void	OmniposeSegmentationThresholdSettings.setExcludeOnEdges(boolean excludeOnEdges)
void	OmniposeSegmentationTweaksSettings.setFastMode(boolean fastMode)
void	OmniposeSegmentationThresholdSettings.setFlowThreshold(double flowThreshold)
void	OmniposeTrainingTweaksSettings.setGenerateConnectedComponents(boolean generateConnectedComponents)
void	OmniposeSegmentationTweaksSettings.setInterpolate(boolean interpolate)
void	OmniposeTrainingTweaksSettings.setLearningRate(double learningRate)
void	OmniposeSegmentationThresholdSettings.setMaskThreshold(double maskThreshold)
void	OmniposeTrainingTweaksSettings.setMinTrainMasks(int minTrainMasks)
void	OmniposeSegmentationTweaksSettings.setNetAverage(boolean netAverage)
void	OmniposeSegmentationThresholdSettings.setStitchThreshold(OptionalDoubleParameter stitchThreshold)
void	OmniposeTrainingTweaksSettings.setUseResidualConnections(boolean useResidualConnections)
void	OmniposeTrainingTweaksSettings.setUseStyleVector(boolean useStyleVector)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.parameters.api.enums

Methods in org.hkijena.jipipe.extensions.parameters.api.enums with annotations of type JIPipeParameter

Modifier and Type	Method and Description
DynamicStringSetParameter	EnumParameterGenerator.getGeneratedValues()
void	EnumParameterGenerator.setGeneratedValues(DynamicStringSetParameter generatedValues)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.parameters.library.primitives

Methods in org.hkijena.jipipe.extensions.parameters.library.primitives with annotations of type JIPipeParameter

Modifier and Type	Method and Description
double	StringOrDouble.getDoubleValue()
double	NumberRangeParameterGenerator.getMaxNumber()
double	NumberRangeParameterGenerator.getMinNumber()
StringOrDouble.Mode	StringOrDouble.getMode()
double	NumberRangeParameterGenerator.getStepSize()
String	StringOrDouble.getStringValue()
void	StringOrDouble.setDoubleValue(double doubleValue)
void	NumberRangeParameterGenerator.setMaxNumber(double maxNumber)
void	NumberRangeParameterGenerator.setMinNumber(double minNumber)
void	StringOrDouble.setMode(StringOrDouble.Mode mode)
void	NumberRangeParameterGenerator.setStepSize(double stepSize)
void	StringOrDouble.setStringValue(String String)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.parameters.library.references

Methods in org.hkijena.jipipe.extensions.parameters.library.references with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalBooleanParameter	ImageJDataExportOperationRef.getActivate()
OptionalBooleanParameter	ImageJDataExportOperationRef.getAppend()
OptionalBooleanParameter	ImageJDataExportOperationRef.getDuplicate()
OptionalBooleanParameter	ImageJDataImportOperationRef.getDuplicate()
OptionalStringParameter	ImageJDataExportOperationRef.getName()
OptionalStringParameter	ImageJDataImportOperationRef.getName()
OptionalBooleanParameter	ImageJDataExportOperationRef.getNoWindows()
void	ImageJDataExportOperationRef.setActivate(OptionalBooleanParameter activate)
void	ImageJDataExportOperationRef.setAppend(OptionalBooleanParameter append)
void	ImageJDataExportOperationRef.setDuplicate(OptionalBooleanParameter duplicate)
void	ImageJDataImportOperationRef.setDuplicate(OptionalBooleanParameter duplicate)
void	ImageJDataExportOperationRef.setName(OptionalStringParameter name)
void	ImageJDataImportOperationRef.setName(OptionalStringParameter name)
void	ImageJDataExportOperationRef.setNoWindows(OptionalBooleanParameter noWindows)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.parameters.library.roi

Methods in org.hkijena.jipipe.extensions.parameters.library.roi with annotations of type JIPipeParameter

Modifier and Type	Method and Description
Anchor	FixedMargin.getAnchor()
Anchor	Margin.getAnchor()
NumericFunctionExpression	FixedMargin.getBottom()
NumericFunctionExpression	Margin.getBottom()
NumericFunctionExpression	Margin.getHeight()
NumericFunctionExpression	FixedMargin.getLeft()
NumericFunctionExpression	Margin.getLeft()
NumericFunctionExpression	FixedMargin.getRight()
NumericFunctionExpression	Margin.getRight()
NumericFunctionExpression	FixedMargin.getTop()
NumericFunctionExpression	Margin.getTop()
NumericFunctionExpression	Margin.getWidth()
void	FixedMargin.setAnchor(Anchor anchor)
void	Margin.setAnchor(Anchor anchor)
void	FixedMargin.setBottom(NumericFunctionExpression bottom)
void	Margin.setBottom(NumericFunctionExpression bottom)
void	Margin.setHeight(NumericFunctionExpression height)
void	FixedMargin.setLeft(NumericFunctionExpression left)
void	Margin.setLeft(NumericFunctionExpression left)
void	FixedMargin.setRight(NumericFunctionExpression right)
void	Margin.setRight(NumericFunctionExpression right)
void	FixedMargin.setTop(NumericFunctionExpression top)
void	Margin.setTop(NumericFunctionExpression top)
void	Margin.setWidth(NumericFunctionExpression width)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.pipelinerender

Methods in org.hkijena.jipipe.extensions.pipelinerender with annotations of type JIPipeParameter

Modifier and Type	Method and Description
int	RenderPipelineRunSettings.getLabelFontSize()
OptionalIntegerParameter	RenderPipelineRunSettings.getMaxEdgeWidth()
boolean	RenderPipelineRunSettings.isRenderLabel()
boolean	RenderPipelineRunSettings.isRenderShadow()
void	RenderPipelineRunSettings.setLabelFontSize(int labelFontSize)
void	RenderPipelineRunSettings.setMaxEdgeWidth(OptionalIntegerParameter maxEdgeWidth)
void	RenderPipelineRunSettings.setRenderLabel(boolean renderLabel)
void	RenderPipelineRunSettings.setRenderShadow(boolean renderShadow)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.plots.datatypes

Methods in org.hkijena.jipipe.extensions.plots.datatypes with annotations of type JIPipeParameter

Modifier and Type	Method and Description
Color	PlotData.getBackgroundColor()
int	HistogramPlotData.getBinAxisFontSize()
String	HistogramPlotData.getBinAxisLabel()
int	HistogramPlotData.getBins()
int	CategoryPlotData.getCategoryAxisFontSize()
String	CategoryPlotData.getCategoryAxisLabel()
ColorMap	PlotData.getColorMap()
ColorListParameter	PlotData.getCustomColorMap()
int	PlotData.getExportHeight()
int	PlotData.getExportWidth()
Color	PlotData.getGridColor()
HistogramPlotData.HistogramType_	HistogramPlotData.getHistogramType()
int	Pie3DPlotData.getLabelFontSize()
int	Pie2DPlotData.getLabelFontSize()
int	PlotData.getLegendFontSize()
int	LineCategoryPlotData.getLineThickness()
int	LineXYPlotData.getLineThickness()
int	LineStatisticalCategoryPlotData.getLineThickness()
String	PlotDataSeries.getName()
String	PlotData.getTitle()
int	PlotData.getTitleFontSize()
int	CategoryPlotData.getValueAxisFontSize()
int	HistogramPlotData.getValueAxisFontSize()
String	CategoryPlotData.getValueAxisLabel()
String	HistogramPlotData.getValueAxisLabel()
OptionalDoubleParameter	CategoryPlotData.getValueAxisMaximum()
OptionalDoubleParameter	HistogramPlotData.getValueAxisMaximum()
OptionalDoubleParameter	CategoryPlotData.getValueAxisMinimum()
OptionalDoubleParameter	HistogramPlotData.getValueAxisMinimum()
int	XYPlotData.getxAxisFontSize()
String	XYPlotData.getxAxisLabel()
OptionalDoubleParameter	XYPlotData.getxAxisMaximum()
OptionalDoubleParameter	XYPlotData.getxAxisMinimum()
int	XYPlotData.getyAxisFontSize()
String	XYPlotData.getyAxisLabel()
OptionalDoubleParameter	XYPlotData.getyAxisMaximum()
OptionalDoubleParameter	XYPlotData.getyAxisMinimum()
boolean	PlotData.isUseCustomColorMap()
boolean	PlotData.isWithLegend()
void	PlotData.setBackgroundColor(Color backgroundColor)
void	HistogramPlotData.setBinAxisFontSize(int binAxisFontSize)
void	HistogramPlotData.setBinAxisLabel(String binAxisLabel)
void	HistogramPlotData.setBins(int bins)
void	CategoryPlotData.setCategoryAxisFontSize(int categoryAxisFontSize)
void	CategoryPlotData.setCategoryAxisLabel(String categoryAxisLabel)
void	PlotData.setColorMap(ColorMap colorMap)
void	PlotData.setCustomColorMap(ColorListParameter customColorMap)
void	PlotData.setExportHeight(int exportHeight)
void	PlotData.setExportWidth(int exportWidth)
void	PlotData.setGridColor(Color gridColor)
void	HistogramPlotData.setHistogramType(HistogramPlotData.HistogramType_ histogramType)
boolean	Pie3DPlotData.setLabelFontSize(int labelFontSize)
boolean	Pie2DPlotData.setLabelFontSize(int labelFontSize)
void	PlotData.setLegendFontSize(int legendFontSize)
void	LineCategoryPlotData.setLineThickness(int lineThickness)
void	LineXYPlotData.setLineThickness(int lineThickness)
void	LineStatisticalCategoryPlotData.setLineThickness(int lineThickness)
void	PlotDataSeries.setName(String name)
void	PlotData.setTitle(String title) Sets the plot title
boolean	PlotData.setTitleFontSize(int titleFontSize)
void	PlotData.setUseCustomColorMap(boolean useCustomColorMap)
void	CategoryPlotData.setValueAxisFontSize(int valueAxisFontSize)
void	HistogramPlotData.setValueAxisFontSize(int valueAxisFontSize)
void	CategoryPlotData.setValueAxisLabel(String valueAxisLabel)
void	HistogramPlotData.setValueAxisLabel(String valueAxisLabel)
void	CategoryPlotData.setValueAxisMaximum(OptionalDoubleParameter valueAxisMaximum)
void	HistogramPlotData.setValueAxisMaximum(OptionalDoubleParameter valueAxisMaximum)
void	CategoryPlotData.setValueAxisMinimum(OptionalDoubleParameter valueAxisMinimum)
void	HistogramPlotData.setValueAxisMinimum(OptionalDoubleParameter valueAxisMinimum)
void	PlotData.setWithLegend(boolean withLegend)
void	XYPlotData.setxAxisFontSize(int xAxisFontSize)
void	XYPlotData.setxAxisLabel(String xAxisLabel)
void	XYPlotData.setxAxisMaximum(OptionalDoubleParameter xAxisMaximum)
void	XYPlotData.setxAxisMinimum(OptionalDoubleParameter xAxisMinimum)
void	XYPlotData.setyAxisFontSize(int yAxisFontSize)
void	XYPlotData.setyAxisLabel(String yAxisLabel)
void	XYPlotData.setyAxisMaximum(OptionalDoubleParameter yAxisMaximum)
void	XYPlotData.setyAxisMinimum(OptionalDoubleParameter yAxisMinimum)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.plots.nodes

Methods in org.hkijena.jipipe.extensions.plots.nodes with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeDynamicParameterCollection	PlotTables2Algorithm.getInputColumns()
JIPipeDynamicParameterCollection	PlotTablesAlgorithm.getInputColumns() Deprecated.
JIPipeDataInfoRef	PlotTablesAlgorithm.getPlotType() Deprecated.
PlotData	PlotTables2Algorithm.getPlotTypeParameters()
PlotData	PlotTablesAlgorithm.getPlotTypeParameters() Deprecated.
StringQueryExpression	PlotTables2Algorithm.getSeriesName()
StringQueryExpression	PlotTablesAlgorithm.getSeriesName() Deprecated.
void	PlotTablesAlgorithm.setPlotType(JIPipeDataInfoRef plotType) Deprecated.
void	PlotTables2Algorithm.setSeriesName(StringQueryExpression seriesName)
void	PlotTablesAlgorithm.setSeriesName(StringQueryExpression seriesName) Deprecated.

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.processes

Methods in org.hkijena.jipipe.extensions.processes with annotations of type JIPipeParameter

Modifier and Type	Method and Description
DefaultExpressionParameter	ProcessEnvironment.getArguments()
StringQueryExpressionAndStringPairParameter.List	ProcessEnvironment.getEnvironmentVariables()
Path	ProcessEnvironment.getExecutablePathLinux()
Path	ProcessEnvironment.getExecutablePathOSX()
Path	ProcessEnvironment.getExecutablePathWindows()
ProcessEnvironment.List	ProcessesExtensionSettings.getPresets()
void	ProcessEnvironment.setArguments(DefaultExpressionParameter arguments)
void	ProcessEnvironment.setEnvironmentVariables(StringQueryExpressionAndStringPairParameter.List environmentVariables)
void	ProcessEnvironment.setExecutablePathLinux(Path executablePathLinux)
void	ProcessEnvironment.setExecutablePathOSX(Path executablePathOSX)
void	ProcessEnvironment.setExecutablePathWindows(Path executablePathWindows)
void	ProcessesExtensionSettings.setPresets(ProcessEnvironment.List presets)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.python

Methods in org.hkijena.jipipe.extensions.python with annotations of type JIPipeParameter

Modifier and Type	Method and Description
DefaultExpressionParameter	PythonEnvironment.getArguments()
StringList	PythonExtensionSettings.getEasyInstallerRepositories()
StringQueryExpressionAndStringPairParameter.List	PythonEnvironment.getEnvironmentVariables()
Path	PythonEnvironment.getExecutablePath()
Path	PythonPackageLibraryEnvironmentInstaller.Configuration.getInstallationPath()
Path	PythonPackageLibraryEnvironment.getLibraryDirectory()
String	PythonPackageLibraryEnvironmentInstaller.Configuration.getName()
PythonEnvironment.List	PythonExtensionSettings.getPresets()
JIPipePythonAdapterLibraryEnvironment	PythonExtensionSettings.getPythonAdapterLibraryEnvironment()
JIPipePythonAdapterLibraryEnvironment.List	PythonExtensionSettings.getPythonAdapterPresets()
PythonEnvironment	PythonExtensionSettings.getPythonEnvironment()
PythonEnvironmentType	PythonEnvironment.getType()
boolean	PythonPackageLibraryEnvironment.isProvidedByEnvironment()
void	PythonEnvironment.setArguments(DefaultExpressionParameter arguments)
void	PythonExtensionSettings.setEasyInstallerRepositories(StringList easyInstallerRepositories)
void	PythonEnvironment.setEnvironmentVariables(StringQueryExpressionAndStringPairParameter.List environmentVariables)
void	PythonEnvironment.setExecutablePath(Path executablePath)
void	PythonPackageLibraryEnvironmentInstaller.Configuration.setInstallationPath(Path installationPath)
void	PythonPackageLibraryEnvironment.setLibraryDirectory(Path libraryDirectory)
void	PythonPackageLibraryEnvironmentInstaller.Configuration.setName(String name)
void	PythonExtensionSettings.setPresets(PythonEnvironment.List presets)
void	PythonPackageLibraryEnvironment.setProvidedByEnvironment(boolean providedByEnvironment)
void	PythonExtensionSettings.setPythonAdapterLibraryEnvironment(JIPipePythonAdapterLibraryEnvironment pythonAdapterLibraryEnvironment)
void	PythonExtensionSettings.setPythonAdapterPresets(JIPipePythonAdapterLibraryEnvironment.List pythonAdapterPresets)
void	PythonExtensionSettings.setPythonEnvironment(PythonEnvironment pythonEnvironment)
void	PythonEnvironment.setType(PythonEnvironmentType type)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.python.algorithms

Methods in org.hkijena.jipipe.extensions.python.algorithms with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeTextAnnotationMergeMode	PythonScriptAlgorithm.getAnnotationMergeStrategy()
JIPipeTextAnnotationMergeMode	IteratingPythonScriptAlgorithm.getAnnotationMergeStrategy()
JIPipeTextAnnotationMergeMode	MergingPythonScriptAlgorithm.getAnnotationMergeStrategy()
PythonScript	JythonScriptAlgorithm.getCode()
PythonScript	SimpleIteratingJythonScriptAlgorithm.getCode()
PythonScript	PythonScriptAlgorithm.getCode()
PythonScript	MergingJythonScriptAlgorithm.getCode()
PythonScript	IteratingJythonScriptAlgorithm.getCode()
PythonScript	IteratingPythonScriptAlgorithm.getCode()
PythonScript	MergingPythonScriptAlgorithm.getCode()
OptionalPythonEnvironment	PythonScriptAlgorithm.getOverrideEnvironment()
OptionalPythonEnvironment	IteratingPythonScriptAlgorithm.getOverrideEnvironment()
OptionalPythonEnvironment	MergingPythonScriptAlgorithm.getOverrideEnvironment()
JIPipeDynamicParameterCollection	JythonScriptAlgorithm.getScriptParameters()
JIPipeDynamicParameterCollection	SimpleIteratingJythonScriptAlgorithm.getScriptParameters()
JIPipeDynamicParameterCollection	PythonScriptAlgorithm.getScriptParameters()
JIPipeDynamicParameterCollection	MergingJythonScriptAlgorithm.getScriptParameters()
JIPipeDynamicParameterCollection	IteratingJythonScriptAlgorithm.getScriptParameters()
JIPipeDynamicParameterCollection	IteratingPythonScriptAlgorithm.getScriptParameters()
JIPipeDynamicParameterCollection	MergingPythonScriptAlgorithm.getScriptParameters()
boolean	PythonScriptAlgorithm.isCleanUpAfterwards()
boolean	IteratingPythonScriptAlgorithm.isCleanUpAfterwards()
boolean	MergingPythonScriptAlgorithm.isCleanUpAfterwards()
void	PythonScriptAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	IteratingPythonScriptAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	MergingPythonScriptAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	PythonScriptAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards)
void	IteratingPythonScriptAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards)
void	MergingPythonScriptAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards)
void	JythonScriptAlgorithm.setCode(PythonScript code)
void	SimpleIteratingJythonScriptAlgorithm.setCode(PythonScript code)
void	PythonScriptAlgorithm.setCode(PythonScript code)
void	MergingJythonScriptAlgorithm.setCode(PythonScript code)
void	IteratingJythonScriptAlgorithm.setCode(PythonScript code)
void	IteratingPythonScriptAlgorithm.setCode(PythonScript code)
void	MergingPythonScriptAlgorithm.setCode(PythonScript code)
void	PythonScriptAlgorithm.setOverrideEnvironment(OptionalPythonEnvironment overrideEnvironment)
void	IteratingPythonScriptAlgorithm.setOverrideEnvironment(OptionalPythonEnvironment overrideEnvironment)
void	MergingPythonScriptAlgorithm.setOverrideEnvironment(OptionalPythonEnvironment overrideEnvironment)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.python.installers

Methods in org.hkijena.jipipe.extensions.python.installers with annotations of type JIPipeParameter

Modifier and Type	Method and Description
String	BasicMinicondaEnvPythonInstaller.Configuration.getCondaDownloadURL()
Path	SelectCondaEnvPythonInstaller.Configuration.getCondaExecutable()
OptionalPathParameter	BasicMinicondaEnvPythonInstaller.Configuration.getCustomInstallerPath()
String	SelectCondaEnvPythonInstaller.Configuration.getEnvironmentName()
OptionalStringParameter	BasicMinicondaEnvPythonInstaller.Configuration.getForcePythonVersion()
Path	BasicMinicondaEnvPythonInstaller.Configuration.getInstallationPath()
Path	BasicPortableEnvPythonInstaller.Configuration.getInstallationPath()
String	BasicMinicondaEnvPythonInstaller.Configuration.getName()
String	SelectSystemPythonInstaller.Configuration.getName()
String	BasicPortableEnvPythonInstaller.Configuration.getName()
String	SelectCondaEnvPythonInstaller.Configuration.getName()
String	SelectVirtualEnvPythonInstaller.Configuration.getName()
OptionalPathParameter	SelectCondaEnvPythonInstaller.Configuration.getOverrideEnvironment()
OptionalPathParameter	BasicPortableEnvPythonInstaller.Configuration.getPreDownloadedArchivePath()
String	BasicPortableEnvPythonInstaller.Configuration.getPythonDownloadURL()
Path	SelectSystemPythonInstaller.Configuration.getPythonExecutable()
Path	SelectVirtualEnvPythonInstaller.Configuration.getVirtualEnvDirectory()
boolean	MinicondaEnvPythonInstaller.Configuration.isInstallNumpy()
boolean	PortableEnvPythonInstaller.Configuration.isInstallNumpy()
boolean	MinicondaEnvPythonInstaller.Configuration.isInstallPandas()
boolean	PortableEnvPythonInstaller.Configuration.isInstallPandas()
boolean	MinicondaEnvPythonInstaller.Configuration.isInstallScikitImage()
boolean	PortableEnvPythonInstaller.Configuration.isInstallScikitImage()
boolean	MinicondaEnvPythonInstaller.Configuration.isInstallScikitLearn()
boolean	PortableEnvPythonInstaller.Configuration.isInstallScikitLearn()
boolean	MinicondaEnvPythonInstaller.Configuration.isInstallTiffFile()
boolean	PortableEnvPythonInstaller.Configuration.isInstallTiffFile()
void	BasicMinicondaEnvPythonInstaller.Configuration.setCondaDownloadURL(String condaDownloadURL)
void	SelectCondaEnvPythonInstaller.Configuration.setCondaExecutable(Path condaExecutable)
void	BasicMinicondaEnvPythonInstaller.Configuration.setCustomInstallerPath(OptionalPathParameter customInstallerPath)
void	SelectCondaEnvPythonInstaller.Configuration.setEnvironmentName(String environmentName)
void	BasicMinicondaEnvPythonInstaller.Configuration.setForcePythonVersion(OptionalStringParameter forcePythonVersion)
void	BasicMinicondaEnvPythonInstaller.Configuration.setInstallationPath(Path installationPath)
void	BasicPortableEnvPythonInstaller.Configuration.setInstallationPath(Path installationPath)
void	MinicondaEnvPythonInstaller.Configuration.setInstallNumpy(boolean installNumpy)
void	PortableEnvPythonInstaller.Configuration.setInstallNumpy(boolean installNumpy)
void	MinicondaEnvPythonInstaller.Configuration.setInstallPandas(boolean installPandas)
void	PortableEnvPythonInstaller.Configuration.setInstallPandas(boolean installPandas)
void	MinicondaEnvPythonInstaller.Configuration.setInstallScikitImage(boolean installScikitImage)
void	PortableEnvPythonInstaller.Configuration.setInstallScikitImage(boolean installScikitImage)
void	MinicondaEnvPythonInstaller.Configuration.setInstallScikitLearn(boolean installScikitLearn)
void	PortableEnvPythonInstaller.Configuration.setInstallScikitLearn(boolean installScikitLearn)
void	MinicondaEnvPythonInstaller.Configuration.setInstallTiffFile(boolean installTiffFile)
void	PortableEnvPythonInstaller.Configuration.setInstallTiffFile(boolean installTiffFile)
void	BasicMinicondaEnvPythonInstaller.Configuration.setName(String name)
void	SelectSystemPythonInstaller.Configuration.setName(String name)
void	BasicPortableEnvPythonInstaller.Configuration.setName(String name)
void	SelectCondaEnvPythonInstaller.Configuration.setName(String name)
void	SelectVirtualEnvPythonInstaller.Configuration.setName(String name)
void	SelectCondaEnvPythonInstaller.Configuration.setOverrideEnvironment(OptionalPathParameter overrideEnvironment)
void	BasicPortableEnvPythonInstaller.Configuration.setPreDownloadedArchivePath(OptionalPathParameter preDownloadedArchivePath)
void	BasicPortableEnvPythonInstaller.Configuration.setPythonDownloadURL(String pythonDownloadURL)
void	SelectSystemPythonInstaller.Configuration.setPythonExecutable(Path pythonExecutable)
void	SelectVirtualEnvPythonInstaller.Configuration.setVirtualEnvDirectory(Path virtualEnvDirectory)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.r

Methods in org.hkijena.jipipe.extensions.r with annotations of type JIPipeParameter

Modifier and Type	Method and Description
DefaultExpressionParameter	REnvironment.getArguments()
StringList	RExtensionSettings.getEasyInstallerRepositories()
REnvironment	RExtensionSettings.getEnvironment()
StringQueryExpressionAndStringPairParameter.List	REnvironment.getEnvironmentVariables()
REnvironment.List	RExtensionSettings.getPresets()
Path	REnvironment.getRExecutablePath()
Path	REnvironment.getRScriptExecutablePath()
void	REnvironment.setArguments(DefaultExpressionParameter arguments)
void	RExtensionSettings.setEasyInstallerRepositories(StringList easyInstallerRepositories)
void	RExtensionSettings.setEnvironment(REnvironment environment)
void	REnvironment.setEnvironmentVariables(StringQueryExpressionAndStringPairParameter.List environmentVariables)
void	RExtensionSettings.setPresets(REnvironment.List presets)
void	REnvironment.setRExecutablePath(Path RExecutablePath)
void	REnvironment.setRScriptExecutablePath(Path RScriptExecutablePath)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.r.algorithms

Methods in org.hkijena.jipipe.extensions.r.algorithms with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeTextAnnotationMergeMode	MergingRScriptAlgorithm.getAnnotationMergeStrategy()
JIPipeTextAnnotationMergeMode	IteratingRScriptAlgorithm.getAnnotationMergeStrategy()
ImportRDatasetAlgorithm.Dataset	ImportRDatasetAlgorithm.getDataset()
OptionalREnvironment	ImportRDatasetAlgorithm.getOverrideEnvironment()
OptionalREnvironment	MergingRScriptAlgorithm.getOverrideEnvironment()
OptionalREnvironment	IteratingRScriptAlgorithm.getOverrideEnvironment()
RScriptParameter	MergingRScriptAlgorithm.getScript()
RScriptParameter	IteratingRScriptAlgorithm.getScript()
JIPipeDynamicParameterCollection	MergingRScriptAlgorithm.getVariables()
JIPipeDynamicParameterCollection	IteratingRScriptAlgorithm.getVariables()
boolean	MergingRScriptAlgorithm.isCleanUpAfterwards()
boolean	IteratingRScriptAlgorithm.isCleanUpAfterwards()
void	MergingRScriptAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	IteratingRScriptAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	MergingRScriptAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards)
void	IteratingRScriptAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards)
void	ImportRDatasetAlgorithm.setDataset(ImportRDatasetAlgorithm.Dataset dataset)
void	ImportRDatasetAlgorithm.setOverrideEnvironment(OptionalREnvironment overrideEnvironment)
void	MergingRScriptAlgorithm.setOverrideEnvironment(OptionalREnvironment overrideEnvironment)
void	IteratingRScriptAlgorithm.setOverrideEnvironment(OptionalREnvironment overrideEnvironment)
void	MergingRScriptAlgorithm.setScript(RScriptParameter script)
void	IteratingRScriptAlgorithm.setScript(RScriptParameter script)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.r.installers

Methods in org.hkijena.jipipe.extensions.r.installers with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalPathParameter	REnvInstaller.Configuration.getCustomInstallerPath()
Path	REnvInstaller.Configuration.getInstallationPath()
String	REnvInstaller.Configuration.getName()
String	REnvInstaller.Configuration.getRDownloadURL()
void	REnvInstaller.Configuration.setCustomInstallerPath(OptionalPathParameter customInstallerPath)
void	REnvInstaller.Configuration.setInstallationPath(Path installationPath)
void	REnvInstaller.Configuration.setName(String name)
void	REnvInstaller.Configuration.setRDownloadURL(String RDownloadURL)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.settings

Methods in org.hkijena.jipipe.extensions.settings with annotations of type JIPipeParameter

Modifier and Type	Method and Description
GraphEditorUISettings.AlgorithmFinderSettings	GraphEditorUISettings.getAlgorithmFinderSettings()
DefaultExpressionParameter	DownloadSettings.DownloadEnvironment.getArguments()
GraphAutoLayout	GraphEditorUISettings.getAutoLayout()
int	AutoSaveSettings.getAutoSaveDelay()
StringList	NotificationUISettings.getBlockedNotifications()
PathList	FileChooserSettings.getBookmarks()
OptionalPathParameter	AutoSaveSettings.getCustomSavePath()
int	ImageViewerUISettings.getDefaultAnimationSpeed()
int	RuntimeSettings.getDefaultQuickRunThreads()
int	RuntimeSettings.getDefaultRunThreads()
JIPipeGraphViewMode	GraphEditorUISettings.getDefaultViewMode()
IntegerAndIntegerPairParameter.List	GeneralDataSettings.getExportedPreviewSizes()
DownloadSettings.DownloadEnvironment	DownloadSettings.getExternalDownloaderProcess()
FileChooserSettings.FileChooserType	FileChooserSettings.getFileChooserType()
Path	FileChooserSettings.getLastDataDirectory()
Path	FileChooserSettings.getLastExternalDirectory()
Path	FileChooserSettings.getLastParametersDirectory()
Path	FileChooserSettings.getLastProjectsDirectory()
int	RuntimeSettings.getLogLimit()
int	HistoryJournalSettings.getMaxEntries()
int	GeneralDataSettings.getMaxTableColumnSize()
StringList	NodeTemplateSettings.getNodeTemplateDownloadRepositories()
JIPipeNodeTemplate.List	NodeTemplateSettings.getNodeTemplates()
int	GeneralDataSettings.getPreviewSize()
ProjectsSettings.ProjectTemplateEnum	ProjectsSettings.getProjectTemplate()
StringList	ProjectsSettings.getProjectTemplateDownloadRepositories()
int	RuntimeSettings.getRealTimeRunDelay()
PathList	ProjectsSettings.getRecentJsonExtensionProjects()
PathList	ProjectsSettings.getRecentProjects()
GraphEditorUISettings.SearchSettings	GraphEditorUISettings.getSearchSettings()
OptionalIntegerParameter	NotificationUISettings.getShowAfterMinRuntime()
OptionalPathParameter	RuntimeSettings.getTempDirectory()
OptionalPathParameter	VirtualDataSettings.getTempDirectory()
JIPipeUITheme	GeneralUISettings.getTheme()
double	ImageViewerUISettings.getZoomBaseSpeed()
double	ImageViewerUISettings.getZoomDynamicSpeed()
boolean	GraphEditorUISettings.isAccurateMiniMap()
boolean	GeneralUISettings.isAddContextActionsToContextMenu()
boolean	FileChooserSettings.isAddFileExtension()
boolean	RuntimeSettings.isAllowCache()
boolean	GeneralUISettings.isAllowDefaultCollapsedParameters()
boolean	RuntimeSettings.isAllowSkipAlgorithmsWithoutInput()
boolean	ImageViewerUISettings.isAlwaysClearROIs()
boolean	GraphEditorUISettings.isAskOnDeleteCompartment()
boolean	GraphEditorUISettings.isAskOnDeleteNode()
boolean	GraphEditorUISettings.isAskOnDeleteParameter()
boolean	GraphEditorUISettings.isAutoLayoutMovesOtherNodes()
boolean	GeneralDataSettings.isAutoRemoveOutdatedCachedData()
boolean	GeneralDataSettings.isAutoSaveLastDisplay()
boolean	GeneralDataSettings.isAutoSaveLastImporter()
boolean	GraphEditorUISettings.isColorSelectedNodeEdges()
boolean	GraphEditorUISettings.isDrawArrowHeads()
boolean	GraphEditorUISettings.isDrawImprovedEdges()
boolean	GraphEditorUISettings.isDrawNodeShadows()
boolean	GraphEditorUISettings.isDrawOutsideEdges()
boolean	AutoSaveSettings.isEnableAutoSave()
boolean	NotificationUISettings.isEnableNotifications()
boolean	GraphEditorUISettings.SearchSettings.isEnableSearch()
boolean	GeneralDataSettings.isGenerateCachePreviews()
boolean	GeneralDataSettings.isGenerateResultPreviews()
boolean	VirtualDataSettings.isLargeVirtualDataTypesByDefault()
boolean	GraphEditorUISettings.isLayoutAfterAlgorithmFinder()
boolean	GraphEditorUISettings.isLayoutAfterConnect()
boolean	GeneralUISettings.isMaximizeWindows()
boolean	GeneralUISettings.isNeverAskOnClosingTabs()
boolean	GraphEditorUISettings.isNotifyInvalidDragAndDrop()
boolean	GeneralUISettings.isOpenDataWindowsAlwaysOnTop()
boolean	GeneralUISettings.isOpenUtilityWindowsAlwaysOnTop()
boolean	DownloadSettings.isPreferCustomDownloader()
boolean	RuntimeSettings.isRealTimeRunEnabled()
boolean	ProjectsSettings.isRestoreTabs()
boolean	GraphEditorUISettings.AlgorithmFinderSettings.isSearchFindExistingNodes()
boolean	GraphEditorUISettings.SearchSettings.isSearchFindExistingNodes()
boolean	GraphEditorUISettings.AlgorithmFinderSettings.isSearchFindNewNodes()
boolean	GraphEditorUISettings.SearchSettings.isSearchFindNewNodes()
boolean	GeneralUISettings.isShowIntroduction()
boolean	GeneralUISettings.isShowIntroductionTour()
boolean	GeneralUISettings.isShowParameterSearchBar()
boolean	GeneralUISettings.isShowProjectInfo()
boolean	RuntimeSettings.isShowQuickRunSetupWindow()
boolean	GraphEditorUISettings.isShowRunNodeButton()
boolean	NotificationUISettings.isShowRunNotifications()
boolean	NotificationUISettings.isShowRunOnlyIfInactive()
boolean	GraphEditorUISettings.isShowSettingsNodeButton()
boolean	TableViewerUISettings.isShowSideBar()
boolean	ImageViewerUISettings.isShowSideBar()
boolean	ExtensionSettings.isSilent()
boolean	GraphEditorUISettings.isSwitchPanningDirection()
boolean	ExtensionSettings.isValidateImageJDependencies()
boolean	ExtensionSettings.isValidateNodeTypes()
boolean	GeneralUISettings.isValidateOnSave()
boolean	VirtualDataSettings.isVirtualCache()
boolean	VirtualDataSettings.isVirtualMode()
void	GraphEditorUISettings.setAccurateMiniMap(boolean accurateMiniMap)
void	GeneralUISettings.setAddContextActionsToContextMenu(boolean addContextActionsToContextMenu)
void	FileChooserSettings.setAddFileExtension(boolean addFileExtension)
void	RuntimeSettings.setAllowCache(boolean allowCache)
void	GeneralUISettings.setAllowDefaultCollapsedParameters(boolean allowDefaultCollapsedParameters)
void	RuntimeSettings.setAllowSkipAlgorithmsWithoutInput(boolean allowSkipAlgorithmsWithoutInput)
void	ImageViewerUISettings.setAlwaysClearROIs(boolean alwaysClearROIs)
void	DownloadSettings.DownloadEnvironment.setArguments(DefaultExpressionParameter arguments)
void	GraphEditorUISettings.setAskOnDeleteCompartment(boolean askOnDeleteCompartment)
void	GraphEditorUISettings.setAskOnDeleteNode(boolean askOnDeleteNode)
void	GraphEditorUISettings.setAskOnDeleteParameter(boolean askOnDeleteParameter)
void	GraphEditorUISettings.setAutoLayout(GraphAutoLayout autoLayout)
void	GraphEditorUISettings.setAutoLayoutMovesOtherNodes(boolean autoLayoutMovesOtherNodes)
void	GeneralDataSettings.setAutoRemoveOutdatedCachedData(boolean autoRemoveOutdatedCachedData)
boolean	AutoSaveSettings.setAutoSaveDelay(int autoSaveDelay)
void	GeneralDataSettings.setAutoSaveLastDisplay(boolean autoSaveLastDisplay)
void	GeneralDataSettings.setAutoSaveLastImporter(boolean autoSaveLastImporter)
void	NotificationUISettings.setBlockedNotifications(StringList blockedNotifications)
void	FileChooserSettings.setBookmarks(PathList bookmarks)
void	GraphEditorUISettings.setColorSelectedNodeEdges(boolean colorSelectedNodeEdges)
void	AutoSaveSettings.setCustomSavePath(OptionalPathParameter customSavePath)
void	ImageViewerUISettings.setDefaultAnimationSpeed(int defaultAnimationSpeed)
boolean	RuntimeSettings.setDefaultQuickRunThreads(int defaultTestBenchThreads) Sets the number of threads for test bench
boolean	RuntimeSettings.setDefaultRunThreads(int defaultRunThreads) Sets the number of threads
void	GraphEditorUISettings.setDefaultViewMode(JIPipeGraphViewMode defaultViewMode)
void	GraphEditorUISettings.setDrawArrowHeads(boolean drawArrowHeads)
void	GraphEditorUISettings.setDrawImprovedEdges(boolean drawImprovedEdges)
void	GraphEditorUISettings.setDrawNodeShadows(boolean drawNodeShadows)
void	GraphEditorUISettings.setDrawOutsideEdges(boolean drawOutsideEdges)
void	AutoSaveSettings.setEnableAutoSave(boolean enableAutoSave)
void	NotificationUISettings.setEnableNotifications(boolean enableNotifications)
void	GraphEditorUISettings.SearchSettings.setEnableSearch(boolean enableSearch)
void	GeneralDataSettings.setExportedPreviewSizes(IntegerAndIntegerPairParameter.List exportedPreviewSizes)
void	DownloadSettings.setExternalDownloaderProcess(DownloadSettings.DownloadEnvironment externalDownloaderProcess)
void	FileChooserSettings.setFileChooserType(FileChooserSettings.FileChooserType fileChooserType)
void	GeneralDataSettings.setGenerateCachePreviews(boolean generateCachePreviews)
void	GeneralDataSettings.setGenerateResultPreviews(boolean generateResultPreviews)
void	VirtualDataSettings.setLargeVirtualDataTypesByDefault(boolean largeVirtualDataTypesByDefault)
void	FileChooserSettings.setLastDataDirectory(Path lastDataDirectory)
void	FileChooserSettings.setLastExternalDirectory(Path lastExternalDirectory)
void	FileChooserSettings.setLastParametersDirectory(Path lastParametersDirectory)
void	FileChooserSettings.setLastProjectsDirectory(Path lastProjectsDirectory)
void	GraphEditorUISettings.setLayoutAfterAlgorithmFinder(boolean layoutAfterAlgorithmFinder)
void	GraphEditorUISettings.setLayoutAfterConnect(boolean layoutAfterConnect)
void	RuntimeSettings.setLogLimit(int logLimit)
void	HistoryJournalSettings.setMaxEntries(int maxEntries)
void	GeneralUISettings.setMaximizeWindows(boolean maximizeWindows)
void	GeneralDataSettings.setMaxTableColumnSize(int maxTableColumnSize)
void	GeneralUISettings.setNeverAskOnClosingTabs(boolean neverAskOnClosingTabs)
void	NodeTemplateSettings.setNodeTemplateDownloadRepositories(StringList projectTemplateDownloadRepositories)
void	NodeTemplateSettings.setNodeTemplates(JIPipeNodeTemplate.List nodeTemplates)
void	GraphEditorUISettings.setNotifyInvalidDragAndDrop(boolean notifyInvalidDragAndDrop)
void	GeneralUISettings.setOpenDataWindowsAlwaysOnTop(boolean openDataWindowsAlwaysOnTop)
void	GeneralUISettings.setOpenUtilityWindowsAlwaysOnTop(boolean openUtilityWindowsAlwaysOnTop)
void	DownloadSettings.setPreferCustomDownloader(boolean preferCustomDownloader)
void	GeneralDataSettings.setPreviewSize(int previewSize)
void	ProjectsSettings.setProjectTemplate(ProjectsSettings.ProjectTemplateEnum projectTemplate)
void	ProjectsSettings.setProjectTemplateDownloadRepositories(StringList projectTemplateDownloadRepositories)
void	RuntimeSettings.setRealTimeRunDelay(int realTimeRunDelay)
void	RuntimeSettings.setRealTimeRunEnabled(boolean realTimeRunEnabled)
void	ProjectsSettings.setRecentJsonExtensionProjects(PathList recentJsonExtensionProjects)
void	ProjectsSettings.setRecentProjects(PathList recentProjects)
void	ProjectsSettings.setRestoreTabs(boolean restoreTabs)
void	GraphEditorUISettings.AlgorithmFinderSettings.setSearchFindExistingNodes(boolean searchFindExistingNodes)
void	GraphEditorUISettings.SearchSettings.setSearchFindExistingNodes(boolean searchFindExistingNodes)
void	GraphEditorUISettings.AlgorithmFinderSettings.setSearchFindNewNodes(boolean searchFindNewNodes)
void	GraphEditorUISettings.SearchSettings.setSearchFindNewNodes(boolean searchFindNewNodes)
void	NotificationUISettings.setShowAfterMinRuntime(OptionalIntegerParameter showAfterMinRuntime)
void	GeneralUISettings.setShowIntroduction(boolean showIntroduction)
void	GeneralUISettings.setShowIntroductionTour(boolean showIntroductionTour)
void	GeneralUISettings.setShowParameterSearchBar(boolean showParameterSearchBar)
void	GeneralUISettings.setShowProjectInfo(boolean showProjectInfo)
void	RuntimeSettings.setShowQuickRunSetupWindow(boolean showQuickRunSetupWindow)
void	GraphEditorUISettings.setShowRunNodeButton(boolean showRunNodeButton)
void	NotificationUISettings.setShowRunNotifications(boolean showRunNotifications)
void	NotificationUISettings.setShowRunOnlyIfInactive(boolean showRunOnlyIfInactive)
void	GraphEditorUISettings.setShowSettingsNodeButton(boolean showSettingsNodeButton)
void	TableViewerUISettings.setShowSideBar(boolean showSideBar)
void	ImageViewerUISettings.setShowSideBar(boolean showSideBar)
void	ExtensionSettings.setSilent(boolean silent)
void	GraphEditorUISettings.setSwitchPanningDirection(boolean switchPanningDirection)
void	RuntimeSettings.setTempDirectory(OptionalPathParameter tempDirectory)
void	VirtualDataSettings.setTempDirectory(OptionalPathParameter tempDirectory)
void	GeneralUISettings.setTheme(JIPipeUITheme theme)
void	ExtensionSettings.setValidateImageJDependencies(boolean validateImageJDependencies)
void	ExtensionSettings.setValidateNodeTypes(boolean validateNodeTypes)
void	GeneralUISettings.setValidateOnSave(boolean validateOnSave)
void	VirtualDataSettings.setVirtualCache(boolean virtualCache)
void	VirtualDataSettings.setVirtualMode(boolean virtualMode)
void	ImageViewerUISettings.setZoomBaseSpeed(double zoomBaseSpeed)
void	ImageViewerUISettings.setZoomDynamicSpeed(double zoomDynamicSpeed)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.strings.datasources

Methods in org.hkijena.jipipe.extensions.strings.datasources with annotations of type JIPipeParameter

Modifier and Type	Method and Description
String	StringDefinitionDataSource.getValue()
void	StringDefinitionDataSource.setValue(String value)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.tables.nodes

Methods in org.hkijena.jipipe.extensions.tables.nodes with annotations of type JIPipeParameter

Modifier and Type	Method and Description
PythonScript	ModifyAndMergeTablesScript.getCode()
PythonScript	TablesFromScript.getCode()
PythonScript	ModifyTablesScript.getCode()
ExpressionTableColumnGeneratorProcessorParameterList	GenerateColumnAlgorithm.getColumns()
ExpressionTableColumnGeneratorProcessorParameterList	GenerateTableFromExpressionAlgorithm.getColumns()
CustomExpressionVariablesParameter	GenerateColumnAlgorithm.getCustomFilterVariables()
OptionalIntegerParameter	GenerateColumnAlgorithm.getEnsureMinNumberOfRows()
StringQueryExpression	ModifyTableColumnNamesAlgorithm.getExpression()
int	GenerateTableFromExpressionAlgorithm.getGeneratedRows()
IntegratingTableColumnProcessorParameterList	IntegrateColumnsAlgorithm.getProcessorParameters()
JIPipeDynamicParameterCollection	ModifyAndMergeTablesScript.getScriptParameters()
JIPipeDynamicParameterCollection	TablesFromScript.getScriptParameters()
JIPipeDynamicParameterCollection	ModifyTablesScript.getScriptParameters()
ResultsTableDataList	DefineTablesAlgorithm.getTables()
boolean	GenerateColumnAlgorithm.isReplaceIfExists()
void	ModifyAndMergeTablesScript.setCode(PythonScript code)
void	TablesFromScript.setCode(PythonScript code)
void	ModifyTablesScript.setCode(PythonScript code)
void	GenerateColumnAlgorithm.setColumns(ExpressionTableColumnGeneratorProcessorParameterList columns)
void	GenerateTableFromExpressionAlgorithm.setColumns(ExpressionTableColumnGeneratorProcessorParameterList columns)
void	GenerateColumnAlgorithm.setEnsureMinNumberOfRows(OptionalIntegerParameter ensureMinNumberOfRows)
void	ModifyTableColumnNamesAlgorithm.setExpression(StringQueryExpression expression)
boolean	GenerateTableFromExpressionAlgorithm.setGeneratedRows(int generatedRows)
void	IntegrateColumnsAlgorithm.setProcessorParameters(IntegratingTableColumnProcessorParameterList processorParameters)
void	GenerateColumnAlgorithm.setReplaceIfExists(boolean replaceIfExists)
void	DefineTablesAlgorithm.setTables(ResultsTableDataList tables)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.tables.nodes.annotations

Methods in org.hkijena.jipipe.extensions.tables.nodes.annotations with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeTextAnnotationMergeMode	AnnotateDataWithTableValues.getAnnotationMergeMode()
JIPipeTextAnnotationMergeMode	AnnotateByTablePropertiesAlgorithm.getAnnotationMergeStrategy()
DefaultExpressionParameter	AnnotateDataWithTableValues.AnnotationSettings.getAnnotationName()
StringQueryExpression	AddAnnotationColumnsAlgorithm.getAnnotationNameFilter()
String	AddAnnotationColumnsAlgorithm.getAnnotationPrefix()
DefaultExpressionParameter	AnnotateDataWithTableValues.AnnotationSettings.getAnnotationValue()
OptionalAnnotationNameParameter	AnnotateByTablePropertiesAlgorithm.getColumnCountAnnotation()
OptionalAnnotationNameParameter	AnnotateByTablePropertiesAlgorithm.getColumnNamesAnnotation()
ParameterCollectionList	AnnotateDataWithTableValues.getGeneratedAnnotations()
OptionalAnnotationNameParameter	AnnotateByTablePropertiesAlgorithm.getRowCountAnnotation()
boolean	ConvertAnnotationTableToAnnotatedTables.isKeepAnnotationColumns()
void	AnnotateDataWithTableValues.setAnnotationMergeMode(JIPipeTextAnnotationMergeMode annotationMergeMode)
void	AnnotateByTablePropertiesAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	AnnotateDataWithTableValues.AnnotationSettings.setAnnotationName(DefaultExpressionParameter annotationName)
void	AddAnnotationColumnsAlgorithm.setAnnotationNameFilter(StringQueryExpression annotationNameFilter)
void	AddAnnotationColumnsAlgorithm.setAnnotationPrefix(String annotationPrefix)
void	AnnotateDataWithTableValues.AnnotationSettings.setAnnotationValue(DefaultExpressionParameter annotationValue)
void	AnnotateByTablePropertiesAlgorithm.setColumnCountAnnotation(OptionalAnnotationNameParameter columnCountAnnotation)
void	AnnotateByTablePropertiesAlgorithm.setColumnNamesAnnotation(OptionalAnnotationNameParameter columnNamesAnnotation)
void	AnnotateDataWithTableValues.setGeneratedAnnotations(ParameterCollectionList generatedAnnotations)
void	ConvertAnnotationTableToAnnotatedTables.setKeepAnnotationColumns(boolean keepAnnotationColumns)
void	AnnotateByTablePropertiesAlgorithm.setRowCountAnnotation(OptionalAnnotationNameParameter rowCountAnnotation)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.tables.nodes.columns

Methods in org.hkijena.jipipe.extensions.tables.nodes.columns with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeTextAnnotationMergeMode	ColumnsToAnnotationsAlgorithm.getAnnotationMergeStrategy()
CustomExpressionVariablesParameter	ApplyExpressionToColumnsAlgorithm.getCustomExpressionVariables()
TableCellValueQueryExpression	ColumnsToAnnotationsAlgorithm.getFilter()
StringQueryExpression	RemoveColumnAlgorithm.getFilters()
StringQueryExpression	ColumnToStringAlgorithm.getFilters()
StringQueryExpression	ColumnToNumericAlgorithm.getFilters()
ExpressionTableColumnProcessorParameterList	ApplyExpressionToColumnsAlgorithm.getProcessorParameters()
ConvertingTableColumnProcessorParameterList	ConvertColumnsAlgorithm.getProcessorParameters()
StringQueryExpressionAndStringPairParameter.List	RenameSingleColumnsAlgorithm.getRenamingEntries()
StringQueryExpressionAndStringPairParameter.List	RenameTableColumnsAlgorithm.getRenamingEntries()
StringQueryExpressionAndStringQueryPairParameter.List	RenameTableColumnsToAnnotationAlgorithm.getRenamingEntries()
JIPipeTextAnnotationMergeMode	ColumnsToAnnotationsAlgorithm.getRowMergingStrategy()
boolean	ApplyExpressionToColumnsAlgorithm.isAppend()
boolean	ConvertColumnsAlgorithm.isAppend()
boolean	RenameTableColumnsToAnnotationAlgorithm.isIgnoreMissingAnnotations()
boolean	RenameTableColumnsToAnnotationAlgorithm.isIgnoreMissingColumns()
boolean	ColumnToNumericAlgorithm.isOnlyIfPossible()
boolean	SortTableColumnsAlgorithm.isReverseSortOrder()
boolean	SortTableColumnsAlgorithm.isUseNaturalSortOrder()
void	ColumnsToAnnotationsAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	ApplyExpressionToColumnsAlgorithm.setAppend(boolean append)
void	ConvertColumnsAlgorithm.setAppend(boolean append)
void	ColumnsToAnnotationsAlgorithm.setFilter(TableCellValueQueryExpression filter)
void	RemoveColumnAlgorithm.setFilters(StringQueryExpression filters)
void	ColumnToStringAlgorithm.setFilters(StringQueryExpression filters)
void	ColumnToNumericAlgorithm.setFilters(StringQueryExpression filters)
void	RenameTableColumnsToAnnotationAlgorithm.setIgnoreMissingAnnotations(boolean ignoreMissingAnnotations)
void	RenameTableColumnsToAnnotationAlgorithm.setIgnoreMissingColumns(boolean ignoreMissingColumns)
void	ColumnToNumericAlgorithm.setOnlyIfPossible(boolean onlyIfPossible)
void	ConvertColumnsAlgorithm.setProcessorParameters(ConvertingTableColumnProcessorParameterList processorParameters)
void	ApplyExpressionToColumnsAlgorithm.setProcessorParameters(ExpressionTableColumnProcessorParameterList processorParameters)
void	RenameSingleColumnsAlgorithm.setRenamingEntries(StringQueryExpressionAndStringPairParameter.List renamingEntries)
void	RenameTableColumnsAlgorithm.setRenamingEntries(StringQueryExpressionAndStringPairParameter.List renamingEntries)
void	RenameTableColumnsToAnnotationAlgorithm.setRenamingEntries(StringQueryExpressionAndStringQueryPairParameter.List renamingEntries)
void	SortTableColumnsAlgorithm.setReverseSortOrder(boolean reverseSortOrder)
void	ColumnsToAnnotationsAlgorithm.setRowMergingStrategy(JIPipeTextAnnotationMergeMode rowMergingStrategy)
void	SortTableColumnsAlgorithm.setUseNaturalSortOrder(boolean useNaturalSortOrder)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.tables.nodes.filter

Methods in org.hkijena.jipipe.extensions.tables.nodes.filter with annotations of type JIPipeParameter

Modifier and Type	Method and Description
CustomExpressionVariablesParameter	FilterTableRowsAlgorithm.getCustomExpressionVariables()
DefaultExpressionParameter	FilterTableRowsAlgorithm.getFilters()
DefaultExpressionParameter	FilterTablesAlgorithm.getFilters()
IntegerRange	SliceTableRowsAlgorithm.getLimit()
boolean	FilterTablesAlgorithm.isIncludeAnnotations()
void	FilterTableRowsAlgorithm.setFilters(DefaultExpressionParameter filters)
void	FilterTablesAlgorithm.setFilters(DefaultExpressionParameter filters)
void	FilterTablesAlgorithm.setIncludeAnnotations(boolean includeAnnotations)
void	SliceTableRowsAlgorithm.setLimit(IntegerRange limit)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.tables.nodes.merge

Methods in org.hkijena.jipipe.extensions.tables.nodes.merge with annotations of type JIPipeParameter

Modifier and Type	Method and Description
StringQueryExpression	MergeTableColumnsSimpleAlgorithm.getColumnFilter()
StringQueryExpression	MergeTableColumnsSupplementAlgorithm.getColumnFilter()
StringQueryExpression	MergeTableColumnsSupplementAlgorithm.getReferenceColumns()
TableColumnNormalization	MergeTableColumnsSimpleAlgorithm.getRowNormalization()
TableColumnNormalization	MergeTableColumnsSupplementAlgorithm.getRowNormalization()
boolean	MergeTableColumnsSupplementAlgorithm.isExtendTarget()
boolean	MergeTableColumnsSupplementAlgorithm.isSkipEmptyTarget()
void	MergeTableColumnsSimpleAlgorithm.setColumnFilter(StringQueryExpression columnFilter)
void	MergeTableColumnsSupplementAlgorithm.setColumnFilter(StringQueryExpression columnFilter)
void	MergeTableColumnsSupplementAlgorithm.setExtendTarget(boolean extendTarget)
void	MergeTableColumnsSupplementAlgorithm.setReferenceColumns(StringQueryExpression referenceColumns)
void	MergeTableColumnsSimpleAlgorithm.setRowNormalization(TableColumnNormalization rowNormalization)
void	MergeTableColumnsSupplementAlgorithm.setRowNormalization(TableColumnNormalization rowNormalization)
void	MergeTableColumnsSupplementAlgorithm.setSkipEmptyTarget(boolean skipEmptyTarget)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.tables.nodes.rows

Methods in org.hkijena.jipipe.extensions.tables.nodes.rows with annotations of type JIPipeParameter

Modifier and Type	Method and Description
StringQueryExpression	AddMissingRowsInSeriesAlgorithm.getCountingColumn()
CustomExpressionVariablesParameter	ApplyExpressionPerRowAlgorithm.getCustomExpressionVariables()
ExpressionTableColumnGeneratorProcessorParameterList	AddMissingRowsInSeriesAlgorithm.getDefaultValues()
double	AddMissingRowsInSeriesAlgorithm.getExpectedStep()
ExpressionTableColumnGeneratorProcessorParameterList	ApplyExpressionPerRowAlgorithm.getExpressionList()
OptionalDefaultExpressionParameter	AddMissingRowsInSeriesAlgorithm.getMaxCounter()
OptionalDefaultExpressionParameter	AddMissingRowsInSeriesAlgorithm.getMinCounter()
StringQueryExpressionAndSortOrderPairParameter.List	SortTableRowsAlgorithm.getSortOrderList()
boolean	AddMissingRowsInSeriesAlgorithm.isIgnoreEmptyTables()
boolean	SortTableRowsAlgorithm.isReverseSortOrder()
boolean	SortTableRowsAlgorithm.isUseNaturalSortOrder()
void	AddMissingRowsInSeriesAlgorithm.setCountingColumn(StringQueryExpression countingColumn)
void	AddMissingRowsInSeriesAlgorithm.setDefaultValues(ExpressionTableColumnGeneratorProcessorParameterList defaultValues)
boolean	AddMissingRowsInSeriesAlgorithm.setExpectedStep(double expectedStep)
void	ApplyExpressionPerRowAlgorithm.setExpressionList(ExpressionTableColumnGeneratorProcessorParameterList expressionList)
void	AddMissingRowsInSeriesAlgorithm.setIgnoreEmptyTables(boolean ignoreEmptyTables)
void	AddMissingRowsInSeriesAlgorithm.setMaxCounter(OptionalDefaultExpressionParameter maxCounter)
void	AddMissingRowsInSeriesAlgorithm.setMinCounter(OptionalDefaultExpressionParameter minCounter)
void	SortTableRowsAlgorithm.setReverseSortOrder(boolean reverseSortOrder)
void	SortTableRowsAlgorithm.setSortOrderList(StringQueryExpressionAndSortOrderPairParameter.List sortOrderList)
void	SortTableRowsAlgorithm.setUseNaturalSortOrder(boolean useNaturalSortOrder)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.tables.nodes.split

Methods in org.hkijena.jipipe.extensions.tables.nodes.split with annotations of type JIPipeParameter

Modifier and Type	Method and Description
StringQueryExpression	SplitTableIntoColumnsAlgorithm.getColumnFilter()
StringQueryExpression	SplitTableByColumnsAlgorithm.getColumns()
OptionalStringParameter	SplitTableIntoColumnsAlgorithm.getGeneratedAnnotation()
boolean	SplitTableByColumnsAlgorithm.isAddAsAnnotations()
boolean	SplitTableIntoRowsAlgorithm.isAnnotateWithValues()
void	SplitTableByColumnsAlgorithm.setAddAsAnnotations(boolean addAsAnnotations)
void	SplitTableIntoRowsAlgorithm.setAnnotateWithValues(boolean annotateWithValues)
void	SplitTableIntoColumnsAlgorithm.setColumnFilter(StringQueryExpression columnFilter)
void	SplitTableByColumnsAlgorithm.setColumns(StringQueryExpression columns)
void	SplitTableIntoColumnsAlgorithm.setGeneratedAnnotation(OptionalStringParameter generatedAnnotation)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.tables.nodes.transform

Methods in org.hkijena.jipipe.extensions.tables.nodes.transform with annotations of type JIPipeParameter

Modifier and Type	Method and Description
DefaultExpressionParameter	HistogramAlgorithm.getIntegrationFunction()
TableColumnSourceExpressionParameter	HistogramAlgorithm.getKeyColumn()
OptionalStringParameter	MeltTableAlgorithm.getOutputCategoryColumnName()
String	HistogramAlgorithm.getOutputKeyColumn()
String	HistogramAlgorithm.getOutputValueColumn()
String	UnMeltTableAlgorithm.getOutputValueColumnName()
String	MeltTableAlgorithm.getOutputValueColumnName()
TableColumnSourceExpressionParameter	HistogramAlgorithm.getValueColumn()
StringQueryExpression	UnMeltTableAlgorithm.getValueColumns()
StringQueryExpression	MeltTableAlgorithm.getValueColumns()
boolean	HistogramAlgorithm.isCumulative()
boolean	HistogramAlgorithm.isNormalize()
void	HistogramAlgorithm.setCumulative(boolean cumulative)
void	HistogramAlgorithm.setIntegrationFunction(DefaultExpressionParameter integrationFunction)
void	HistogramAlgorithm.setKeyColumn(TableColumnSourceExpressionParameter keyColumn)
void	HistogramAlgorithm.setNormalize(boolean normalize)
void	MeltTableAlgorithm.setOutputCategoryColumnName(OptionalStringParameter outputCategoryColumnName)
void	HistogramAlgorithm.setOutputKeyColumn(String outputKeyColumn)
void	HistogramAlgorithm.setOutputValueColumn(String outputValueColumn)
void	UnMeltTableAlgorithm.setOutputValueColumnName(String outputValueColumnName)
void	MeltTableAlgorithm.setOutputValueColumnName(String outputValueColumnName)
void	HistogramAlgorithm.setValueColumn(TableColumnSourceExpressionParameter valueColumn)
void	UnMeltTableAlgorithm.setValueColumns(StringQueryExpression valueColumns)
void	MeltTableAlgorithm.setValueColumns(StringQueryExpression valueColumns)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.tables.parameters.enums

Methods in org.hkijena.jipipe.extensions.tables.parameters.enums with annotations of type JIPipeParameter

Modifier and Type	Method and Description
ColumnContentType	TableColumnGeneratorParameter.getGeneratedType()
JIPipeDataInfoRef	TableColumnGeneratorParameter.getGeneratorType()
void	TableColumnGeneratorParameter.setGeneratedType(ColumnContentType generatedType)
void	TableColumnGeneratorParameter.setGeneratorType(JIPipeDataInfoRef generatorType)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.utils.algorithms

Methods in org.hkijena.jipipe.extensions.utils.algorithms with annotations of type JIPipeParameter

Modifier and Type	Method and Description
CustomExpressionVariablesParameter	SortRowsByExpressionAlgorithm.getCustomExpressionVariables()
JIPipeDataAnnotationMergeMode	ImportJIPipeSlotFolderAlgorithm.getDataAnnotationMergeMode()
SortOrder	SortRowsByAnnotationsAlgorithm.getDefaultSortOrder()
ParameterCollectionList	SortRowsByExpressionAlgorithm.getEntries()
DefaultExpressionParameter	RunExpressionAlgorithm.getExpression()
IntegerRange	SelectDataTableRowsAlgorithm.getLimit()
JIPipeTextAnnotationMergeMode	UsePlaceholderForMissingDataAlgorithm.getPlaceholderAnnotationMergeStrategy()
IntegerRange	DataBatchSlicer.getSliceRange()
IntegerRange	DataSlicer.getSliceRange()
SortOrder	SortRowsByExpressionAlgorithm.SortEntry.getSortOrder()
StringQueryExpressionAndSortOrderPairParameter.List	SortRowsByAnnotationsAlgorithm.getSortOrderList()
SetVirtualStateAlgorithm.VirtualState	SetVirtualStateAlgorithm.getTargetState()
JIPipeTextAnnotationMergeMode	ImportJIPipeSlotFolderAlgorithm.getTextAnnotationMergeMode()
int	SleepAlgorithm.getTimeout()
DefaultExpressionParameter	SortRowsByExpressionAlgorithm.SortEntry.getValue()
OptionalAnnotationNameParameter	RunExpressionAlgorithm.getWriteToAnnotation()
JIPipeTextAnnotationMergeMode	RunExpressionAlgorithm.getWriteToAnnotationMergeStrategy()
boolean	ToDataStringAlgorithm.isDetailedDataString()
boolean	ImportJIPipeSlotFolderAlgorithm.isIgnoreImportedDataAnnotations()
boolean	ImportJIPipeSlotFolderAlgorithm.isIgnoreImportedTextAnnotations()
boolean	ImportJIPipeSlotFolderAlgorithm.isIgnoreInputDataAnnotations()
boolean	ImportJIPipeSlotFolderAlgorithm.isIgnoreInputTextAnnotations()
void	ImportJIPipeSlotFolderAlgorithm.setDataAnnotationMergeMode(JIPipeDataAnnotationMergeMode dataAnnotationMergeMode)
void	SortRowsByAnnotationsAlgorithm.setDefaultSortOrder(SortOrder defaultSortOrder)
void	ToDataStringAlgorithm.setDetailedDataString(boolean detailedDataString)
void	SortRowsByExpressionAlgorithm.setEntries(ParameterCollectionList entries)
void	RunExpressionAlgorithm.setExpression(DefaultExpressionParameter expression)
void	ImportJIPipeSlotFolderAlgorithm.setIgnoreImportedDataAnnotations(boolean ignoreImportedDataAnnotations)
void	ImportJIPipeSlotFolderAlgorithm.setIgnoreImportedTextAnnotations(boolean ignoreImportedTextAnnotations)
void	ImportJIPipeSlotFolderAlgorithm.setIgnoreInputDataAnnotations(boolean ignoreInputDataAnnotations)
void	ImportJIPipeSlotFolderAlgorithm.setIgnoreInputTextAnnotations(boolean ignoreInputTextAnnotations)
void	SelectDataTableRowsAlgorithm.setLimit(IntegerRange limit)
void	UsePlaceholderForMissingDataAlgorithm.setPlaceholderAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode placeholderAnnotationMergeStrategy)
void	DataBatchSlicer.setSliceRange(IntegerRange sliceRange)
void	DataSlicer.setSliceRange(IntegerRange sliceRange)
void	SortRowsByExpressionAlgorithm.SortEntry.setSortOrder(SortOrder sortOrder)
void	SortRowsByAnnotationsAlgorithm.setSortOrderList(StringQueryExpressionAndSortOrderPairParameter.List sortOrderList)
void	SetVirtualStateAlgorithm.setTargetState(SetVirtualStateAlgorithm.VirtualState targetState)
void	ImportJIPipeSlotFolderAlgorithm.setTextAnnotationMergeMode(JIPipeTextAnnotationMergeMode textAnnotationMergeMode)
void	SleepAlgorithm.setTimeout(int timeout)
void	SortRowsByExpressionAlgorithm.SortEntry.setValue(DefaultExpressionParameter value)
void	RunExpressionAlgorithm.setWriteToAnnotation(OptionalAnnotationNameParameter writeToAnnotation)
void	RunExpressionAlgorithm.setWriteToAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode writeToAnnotationMergeStrategy)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.utils.algorithms.datatable

Methods in org.hkijena.jipipe.extensions.utils.algorithms.datatable with annotations of type JIPipeParameter

Modifier and Type	Method and Description
DataAnnotationQueryExpression	PullDataTableAnnotations.getDataAnnotationFilter()
DataAnnotationQueryExpression	PushDataTableAnnotations.getDataAnnotationFilter()
JIPipeDataAnnotationMergeMode	PullDataTableAnnotations.getDataAnnotationMergeMode()
JIPipeDataAnnotationMergeMode	PushDataTableAnnotations.getDataAnnotationMergeMode()
JIPipeTextAnnotationMergeMode	AnnotateWithDataTableProperties.getMergeMode()
JIPipeTextAnnotationMergeMode	ExtractTableAlgorithm.getMergeStrategy()
OptionalAnnotationNameParameter	AnnotateWithDataTableProperties.getNumDataAnnotationColumns()
OptionalAnnotationNameParameter	AnnotateWithDataTableProperties.getNumRowsAnnotation()
OptionalAnnotationNameParameter	AnnotateWithDataTableProperties.getNumTextAnnotationColumns()
AnnotationQueryExpression	PullDataTableAnnotations.getTextAnnotationFilter()
AnnotationQueryExpression	PushDataTableAnnotations.getTextAnnotationFilter()
JIPipeTextAnnotationMergeMode	PullDataTableAnnotations.getTextAnnotationMergeMode()
JIPipeTextAnnotationMergeMode	PushDataTableAnnotations.getTextAnnotationMergeMode()
boolean	ExtractTableAlgorithm.isMergeAnnotations()
void	PullDataTableAnnotations.setDataAnnotationFilter(DataAnnotationQueryExpression dataAnnotationFilter)
void	PushDataTableAnnotations.setDataAnnotationFilter(DataAnnotationQueryExpression dataAnnotationFilter)
void	PullDataTableAnnotations.setDataAnnotationMergeMode(JIPipeDataAnnotationMergeMode dataAnnotationMergeMode)
void	PushDataTableAnnotations.setDataAnnotationMergeMode(JIPipeDataAnnotationMergeMode dataAnnotationMergeMode)
void	ExtractTableAlgorithm.setMergeAnnotations(boolean mergeAnnotations)
void	AnnotateWithDataTableProperties.setMergeMode(JIPipeTextAnnotationMergeMode mergeMode)
void	ExtractTableAlgorithm.setMergeStrategy(JIPipeTextAnnotationMergeMode mergeStrategy)
void	AnnotateWithDataTableProperties.setNumDataAnnotationColumns(OptionalAnnotationNameParameter numDataAnnotationColumns)
void	AnnotateWithDataTableProperties.setNumRowsAnnotation(OptionalAnnotationNameParameter numRowsAnnotation)
void	AnnotateWithDataTableProperties.setNumTextAnnotationColumns(OptionalAnnotationNameParameter numTextAnnotationColumns)
void	PullDataTableAnnotations.setTextAnnotationFilter(AnnotationQueryExpression textAnnotationFilter)
void	PushDataTableAnnotations.setTextAnnotationFilter(AnnotationQueryExpression textAnnotationFilter)
void	PullDataTableAnnotations.setTextAnnotationMergeMode(JIPipeTextAnnotationMergeMode textAnnotationMergeMode)
void	PushDataTableAnnotations.setTextAnnotationMergeMode(JIPipeTextAnnotationMergeMode textAnnotationMergeMode)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.utils.algorithms.distribute

Methods in org.hkijena.jipipe.extensions.utils.algorithms.distribute with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OutputSlotMapParameterCollection	DistributeDataRandomlyByCountAlgorithm.getCounts()
OutputSlotMapParameterCollection	DistributeDataRandomlyByPercentageAlgorithm.getWeights()

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.utils.algorithms.meta

Methods in org.hkijena.jipipe.extensions.utils.algorithms.meta with annotations of type JIPipeParameter

Modifier and Type	Method and Description
String	GetJIPipeSlotFolderAlgorithm.getCompartmentId()
String	GetJIPipeSlotFolderAlgorithm.getNodeId()
InputSlotMapParameterCollection	PathsToJIPipeProjectParametersAlgorithm.getParameterKeyAssignments()
Path	RunJIPipeProjectAlgorithm.getProjectFile()
String	GetJIPipeSlotFolderAlgorithm.getSlotName()
OptionalIntegerParameter	RunJIPipeProjectAlgorithm.getThreads()
boolean	RunJIPipeProjectAlgorithm.isIgnoreValidation()
void	GetJIPipeSlotFolderAlgorithm.setCompartmentId(String compartmentId)
void	RunJIPipeProjectAlgorithm.setIgnoreValidation(boolean ignoreValidation)
void	GetJIPipeSlotFolderAlgorithm.setNodeId(String nodeId)
void	RunJIPipeProjectAlgorithm.setProjectFile(Path projectFile)
void	GetJIPipeSlotFolderAlgorithm.setSlotName(String slotName)
void	RunJIPipeProjectAlgorithm.setThreads(OptionalIntegerParameter threads)

Uses of JIPipeParameter in org.hkijena.jipipe.extensions.utils.algorithms.processes

Methods in org.hkijena.jipipe.extensions.utils.algorithms.processes with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalDefaultExpressionParameter	RunProcessMergingAlgorithm.getOverrideArguments()
OptionalDefaultExpressionParameter	RunProcessIteratingAlgorithm.getOverrideArguments()
ProcessEnvironment	RunProcessMergingAlgorithm.getProcessEnvironment()
ProcessEnvironment	RunProcessIteratingAlgorithm.getProcessEnvironment()
boolean	RunProcessMergingAlgorithm.isCleanUpAfterwards()
boolean	RunProcessIteratingAlgorithm.isCleanUpAfterwards()
boolean	RunProcessMergingAlgorithm.isOutputOutputFolder()
boolean	RunProcessIteratingAlgorithm.isOutputOutputFolder()
void	RunProcessMergingAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards)
void	RunProcessIteratingAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards)
void	RunProcessMergingAlgorithm.setOutputOutputFolder(boolean outputOutputFolder)
void	RunProcessIteratingAlgorithm.setOutputOutputFolder(boolean outputOutputFolder)
void	RunProcessMergingAlgorithm.setOverrideArguments(OptionalDefaultExpressionParameter overrideArguments)
void	RunProcessIteratingAlgorithm.setOverrideArguments(OptionalDefaultExpressionParameter overrideArguments)
void	RunProcessMergingAlgorithm.setProcessEnvironment(ProcessEnvironment processEnvironment)
void	RunProcessIteratingAlgorithm.setProcessEnvironment(ProcessEnvironment processEnvironment)

Uses of JIPipeParameter in org.hkijena.jipipe.ui.cache.exporters

Methods in org.hkijena.jipipe.ui.cache.exporters with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeDataByMetadataExporter	JIPipeDataTableToFilesByMetadataExporterRun.Settings.getExporter()
boolean	JIPipeDataTableToFilesByMetadataExporterRun.Settings.isRememberSettings()
boolean	JIPipeDataTableToFilesByMetadataExporterRun.Settings.isSplitBySlotName()
void	JIPipeDataTableToFilesByMetadataExporterRun.Settings.setRememberSettings(boolean rememberSettings)
void	JIPipeDataTableToFilesByMetadataExporterRun.Settings.setSplitBySlotName(boolean splitBySlotName)

Uses of JIPipeParameter in org.hkijena.jipipe.ui.components

Methods in org.hkijena.jipipe.ui.components with annotations of type JIPipeParameter

Modifier and Type	Method and Description
HTMLText	AddParameterDialog.Settings.getDescription()
String	AddParameterDialog.Settings.getId()
String	AddParameterDialog.Settings.getName()
void	AddParameterDialog.Settings.setDescription(HTMLText description)
void	AddParameterDialog.Settings.setId(String id)
void	AddParameterDialog.Settings.setName(String name)

Uses of JIPipeParameter in org.hkijena.jipipe.ui.components.tabs

Methods in org.hkijena.jipipe.ui.components.tabs with annotations of type JIPipeParameter

Modifier and Type	Method and Description
String	DocumentTabPane.DocumentTab.getTitle()
void	DocumentTabPane.DocumentTab.setTitle(String title)

Uses of JIPipeParameter in org.hkijena.jipipe.ui.grapheditor.general.properties

Methods in org.hkijena.jipipe.ui.grapheditor.general.properties with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeAdaptiveParameterSettings	JIPipeAdvancedParameterEditorUI.Settings.getAdaptiveParameterSettings()
JIPipeParameterSlotAlgorithmSettings	JIPipeAdvancedParameterEditorUI.Settings.getParameterSlotAlgorithmSettings()

Uses of JIPipeParameter in org.hkijena.jipipe.ui.parameters

Methods in org.hkijena.jipipe.ui.parameters with annotations of type JIPipeParameter

Modifier and Type	Method and Description
HTMLText	DynamicParameterEditorDialog.ParameterEntry.getDescription()
String	DynamicParameterEditorDialog.ParameterEntry.getKey()
String	DynamicParameterEditorDialog.ParameterEntry.getName()
JIPipeParameterTypeInfoRef	DynamicParameterEditorDialog.ParameterEntry.getType()
void	DynamicParameterEditorDialog.ParameterEntry.setDescription(HTMLText description)
void	DynamicParameterEditorDialog.ParameterEntry.setKey(String key)
void	DynamicParameterEditorDialog.ParameterEntry.setName(String name)
void	DynamicParameterEditorDialog.ParameterEntry.setType(JIPipeParameterTypeInfoRef type)

Uses of JIPipeParameter in org.hkijena.jipipe.ui.plotbuilder

Methods in org.hkijena.jipipe.ui.plotbuilder with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeDynamicParameterCollection	JIPipePlotSeriesBuilder.getColumnAssignments()
PlotData	PlotEditor.getCurrentPlot()
String	JIPipePlotSeriesBuilder.getName()
JIPipeDataInfoRef	PlotEditor.getPlotType()
boolean	JIPipePlotSeriesBuilder.isEnabled()
void	JIPipePlotSeriesBuilder.setEnabled(boolean enabled)
void	JIPipePlotSeriesBuilder.setName(String name)
void	PlotEditor.setPlotType(JIPipeDataInfoRef plotType)

Uses of JIPipeParameter in org.hkijena.jipipe.ui.quickrun

Methods in org.hkijena.jipipe.ui.quickrun with annotations of type JIPipeParameter

Modifier and Type	Method and Description
int	QuickRunSettings.getNumThreads()
Path	QuickRunSettings.getOutputPath()
boolean	QuickRunSettings.isExcludeSelected()
boolean	QuickRunSettings.isLoadFromCache()
boolean	QuickRunSettings.isSaveToDisk()
boolean	QuickRunSettings.isStoreIntermediateResults()
boolean	QuickRunSettings.isStoreToCache()
void	QuickRunSettings.setExcludeSelected(boolean excludeSelected)
void	QuickRunSettings.setLoadFromCache(boolean loadFromCache)
void	QuickRunSettings.setNumThreads(int numThreads)
void	QuickRunSettings.setOutputPath(Path outputPath)
void	QuickRunSettings.setSaveToDisk(boolean saveToDisk)
void	QuickRunSettings.setStoreIntermediateResults(boolean storeIntermediateResults)
void	QuickRunSettings.setStoreToCache(boolean storeToCache)

Uses of JIPipeParameter in org.hkijena.jipipe.ui.settings

Methods in org.hkijena.jipipe.ui.settings with annotations of type JIPipeParameter

Modifier and Type	Method and Description
GraphNodeParameterReferenceGroupCollection	JIPipeProjectInfoParameters.getExportedParameters()
void	JIPipeProjectInfoParameters.setExportedParameters(GraphNodeParameterReferenceGroupCollection parameters)