Uses of Class
org.hkijena.jipipe.api.nodes.JIPipeOutputSlot

Packages that use JIPipeOutputSlot

Package	Description
org.hkijena.jipipe.api.compartments.algorithms
org.hkijena.jipipe.api.data
org.hkijena.jipipe.api.grouping
org.hkijena.jipipe.api.looping
org.hkijena.jipipe.api.nodes
org.hkijena.jipipe.extensions.annotation.algorithms
org.hkijena.jipipe.extensions.annotation.datasources
org.hkijena.jipipe.extensions.cellpose.algorithms
org.hkijena.jipipe.extensions.cellpose.algorithms.deprecated
org.hkijena.jipipe.extensions.clij2
org.hkijena.jipipe.extensions.clij2.algorithms
org.hkijena.jipipe.extensions.core.nodes
org.hkijena.jipipe.extensions.filesystem.algorithms
org.hkijena.jipipe.extensions.filesystem.datasources
org.hkijena.jipipe.extensions.forms.algorithms
org.hkijena.jipipe.extensions.ijtrackmate.nodes.converters
org.hkijena.jipipe.extensions.ijtrackmate.nodes.detectors
org.hkijena.jipipe.extensions.ijtrackmate.nodes.spots
org.hkijena.jipipe.extensions.ijtrackmate.nodes.tracks
org.hkijena.jipipe.extensions.ijweka.nodes
org.hkijena.jipipe.extensions.imagej2
org.hkijena.jipipe.extensions.imagej2.algorithms
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.calibration
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convert
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.forms
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.labels
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.labels.filter
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.distancemap
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.local
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.opticalflow
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.overlay
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.annotations
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.assemble
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.convert
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.draw
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.filter
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.generate
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.measure
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.merge
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.modify
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.properties
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.sort
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.split
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.segment
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.sharpen
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.color
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.local
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform
org.hkijena.jipipe.extensions.imagejdatatypes.algorithms
org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.color
org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.datasources
org.hkijena.jipipe.extensions.multiparameters.nodes
org.hkijena.jipipe.extensions.omero.algorithms
org.hkijena.jipipe.extensions.omero.datasources
org.hkijena.jipipe.extensions.omnipose.algorithms
org.hkijena.jipipe.extensions.plots.nodes
org.hkijena.jipipe.extensions.r.algorithms
org.hkijena.jipipe.extensions.strings.datasources
org.hkijena.jipipe.extensions.tables.nodes
org.hkijena.jipipe.extensions.tables.nodes.annotations
org.hkijena.jipipe.extensions.tables.nodes.columns
org.hkijena.jipipe.extensions.tables.nodes.filter
org.hkijena.jipipe.extensions.tables.nodes.merge
org.hkijena.jipipe.extensions.tables.nodes.rows
org.hkijena.jipipe.extensions.tables.nodes.split
org.hkijena.jipipe.extensions.tables.nodes.transform
org.hkijena.jipipe.extensions.utils.algorithms
org.hkijena.jipipe.extensions.utils.algorithms.datatable
org.hkijena.jipipe.extensions.utils.algorithms.distribute
org.hkijena.jipipe.extensions.utils.algorithms.meta

Uses of JIPipeOutputSlot in org.hkijena.jipipe.api.compartments.algorithms

Classes in org.hkijena.jipipe.api.compartments.algorithms with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	JIPipeProjectCompartment A project compartment.

Uses of JIPipeOutputSlot in org.hkijena.jipipe.api.data

Methods in org.hkijena.jipipe.api.data that return JIPipeOutputSlot

Modifier and Type	Method and Description
JIPipeOutputSlot	JIPipeDataSlotInfo.toOutputSlotAnnotation() Converts this info into the annotation form.

Methods in org.hkijena.jipipe.api.data with parameters of type JIPipeOutputSlot

Modifier and Type	Method and Description
JIPipeDataSlotInfo	JIPipeDefaultMutableSlotConfiguration.addSlot(JIPipeOutputSlot slot, boolean user) Adds an input slot from an annotation

Constructors in org.hkijena.jipipe.api.data with parameters of type JIPipeOutputSlot

Constructor and Description
JIPipeDataSlotInfo(JIPipeOutputSlot slot)

Uses of JIPipeOutputSlot in org.hkijena.jipipe.api.grouping

Methods in org.hkijena.jipipe.api.grouping that return types with arguments of type JIPipeOutputSlot

Modifier and Type	Method and Description
List<JIPipeOutputSlot>	JsonNodeInfo.getOutputSlots()

Uses of JIPipeOutputSlot in org.hkijena.jipipe.api.looping

Classes in org.hkijena.jipipe.api.looping with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	LoopEndNode
class	LoopStartNode

Uses of JIPipeOutputSlot in org.hkijena.jipipe.api.nodes

Methods in org.hkijena.jipipe.api.nodes that return types with arguments of type JIPipeOutputSlot

Modifier and Type	Method and Description
List<JIPipeOutputSlot>	JIPipeEmptyNodeInfo.getOutputSlots()
List<JIPipeOutputSlot>	JIPipeNodeInfo.getOutputSlots() Returns general output data.
List<JIPipeOutputSlot>	JIPipeMutableNodeInfo.getOutputSlots()

Method parameters in org.hkijena.jipipe.api.nodes with type arguments of type JIPipeOutputSlot

Modifier and Type	Method and Description
void	JIPipeMutableNodeInfo.setOutputSlots(List<JIPipeOutputSlot> outputSlots) Sets the output slots

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.annotation.algorithms

Classes in org.hkijena.jipipe.extensions.annotation.algorithms with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	AnnotateByExpression Algorithm that annotates all data with the same annotation
class	AnnotateWithAnnotationTable Algorithm that merges the annotations of all inputs and outputs the data with the shared annotations
class	AnnotateWithData
class	AnnotateWithDataString Generates annotations from filenames
class	AnnotateWithSourceSlot Generates annotations from filenames
class	ConvertToAnnotationTable Removes a specified annotation
class	DataAnnotationToStringAnnotation
class	ExtractAndReplaceAnnotation Generates annotations from filenames
class	ExtractDataAnnotation
class	FilterByAnnotation Algorithm that splits the input data by a specified annotation
class	GenerateRandomUniqueAnnotation Generates annotations from filenames
class	GenerateUniqueAnnotation Generates annotations from filenames
class	MergeDataSlots Merges the input slot tables into one data slot
class	ModifyAnnotationScript Algorithm that annotates all data with the same annotation
class	OverwriteAnnotations
class	RemoveAnnotationAlgorithm Removes a specified annotation
class	RemoveArrayAnnotationsAlgorithm
class	RemoveDataAnnotations
class	RemoveNAAnnotationColumnsAlgorithm
class	RenameAnnotation Generates annotations from filenames
class	RenameDataAnnotation Generates annotations from filenames
class	SetSingleAnnotation Algorithm that annotates all data with the same annotation
class	SimplifyAnnotationsAlgorithm
class	SplitByAnnotationScript Algorithm that annotates all data with the same annotation

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.annotation.datasources

Classes in org.hkijena.jipipe.extensions.annotation.datasources with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	AnnotationTableFromFile Imports AnnotationTableData from a file

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.cellpose.algorithms

Classes in org.hkijena.jipipe.extensions.cellpose.algorithms with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	CellposeTrainingAlgorithm
class	ImportCellposeModelAlgorithm
class	ImportCellposeSizeModelAlgorithm

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.cellpose.algorithms.deprecated

Classes in org.hkijena.jipipe.extensions.cellpose.algorithms.deprecated with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	CellposeTrainingAlgorithm_Old Deprecated.

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.clij2

Methods in org.hkijena.jipipe.extensions.clij2 that return types with arguments of type JIPipeOutputSlot

Modifier and Type	Method and Description
List<JIPipeOutputSlot>	CLIJCommandNodeInfo.getOutputSlots()

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.clij2.algorithms

Classes in org.hkijena.jipipe.extensions.clij2.algorithms with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	Clij2PullAlgorithm
class	Clij2PushAlgorithm

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.core.nodes

Classes in org.hkijena.jipipe.extensions.core.nodes with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	JIPipeCommentNode

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.filesystem.algorithms

Classes in org.hkijena.jipipe.extensions.filesystem.algorithms with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	AnnotateWithPathProperties
class	AnnotationTableToPaths Filters input files
class	AnnotationToPath Filters input files
class	ConcatenateByParameter Applies subfolder navigation to each input folder
class	ConcatenatePaths Applies subfolder navigation to each input folder
class	ConvertDataToOutputPath Applies subfolder navigation to each input folder
class	CopyPath Applies subfolder navigation to each input folder
class	CreateDirectory Applies subfolder navigation to each input folder
class	ExportData
class	ExportDataByParameter
class	ExportDataTable
class	ExportDataTableByParameter
class	ExtractFileName Applies subfolder navigation to each input folder
class	ExtractParent Applies subfolder navigation to each input folder
class	FilterPaths Filters input files
class	ImportDataRowFolder
class	ImportDataTableArchive
class	ImportDataTableDirectory
class	ListFiles Algorithm that lists files in each folder
class	ListSubfolders Algorithms that lists the sub folders for each input folder
class	ModifyPath
class	RelativizeByParameter Applies subfolder navigation to each input folder
class	RelativizePaths Applies subfolder navigation to each input folder
class	RenameByString Applies subfolder navigation to each input folder
class	SimpleFileAnnotationGenerator Generates annotations from filenames
class	SimpleFolderAnnotationGenerator Algorithm that generates annotations from folder names
class	SimplePathAnnotationGenerator Algorithm that generates annotations from folder names

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.filesystem.datasources

Classes in org.hkijena.jipipe.extensions.filesystem.datasources with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	DownloadFilesDataSource
class	FileDataSource Provides an input file
class	FileListDataSource Provides an input file
class	FolderDataSource Provides an input folder
class	FolderListDataSource Provides an input folder
class	OutputFolderDataSource
class	PathDataSource Provides an input file
class	PathFromUserDataSource
class	PathListDataSource Provides an input folder
class	TemporaryFileDataSource
class	TemporaryFolderDataSource

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.forms.algorithms

Classes in org.hkijena.jipipe.extensions.forms.algorithms with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	BooleanFormGeneratorAlgorithm
class	DoubleFormGeneratorAlgorithm
class	EnumFormGeneratorAlgorithm
class	GroupHeaderFormGeneratorAlgorithm
class	IntegerFormGeneratorAlgorithm
class	PathFormGeneratorAlgorithm
class	StringFormGeneratorAlgorithm

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.ijtrackmate.nodes.converters

Classes in org.hkijena.jipipe.extensions.ijtrackmate.nodes.converters with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	ConvertSpotsToRoiNode
class	ConvertTracksToRoiNode

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.ijtrackmate.nodes.detectors

Methods in org.hkijena.jipipe.extensions.ijtrackmate.nodes.detectors that return types with arguments of type JIPipeOutputSlot

Modifier and Type	Method and Description
List<JIPipeOutputSlot>	CreateSpotTrackerNodeInfo.getOutputSlots()
List<JIPipeOutputSlot>	CreateSpotDetectorNodeInfo.getOutputSlots()

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.ijtrackmate.nodes.spots

Classes in org.hkijena.jipipe.extensions.ijtrackmate.nodes.spots with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	MeasureSpotsNode
class	MergeSpotsNode
class	SplitSpotsNode
class	SpotDetectorNode
class	SpotFilterNode
class	SpotsToRGBNode

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.ijtrackmate.nodes.tracks

Classes in org.hkijena.jipipe.extensions.ijtrackmate.nodes.tracks with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	FollowSpotsPerTrackNode
class	MeasureBranchesNode
class	MeasureEdgesNode
class	MeasureTracksNode
class	MergeTracksNode
class	SplitTracksNode
class	TrackFilterNode
class	TrackingNode
class	TrackSchemeRendererNode
class	TracksToRGBNode

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.ijweka.nodes

Classes in org.hkijena.jipipe.extensions.ijweka.nodes with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	ImportWekaModelFromFileAlgorithm
class	WekaClassification2DAlgorithm
class	WekaClassification3DAlgorithm
class	WekaTrainingLabels2DAlgorithm
class	WekaTrainingMask2DAlgorithm
class	WekaTrainingROI2DAlgorithm
class	WekaTrainingROI3DAlgorithm

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagej2

Methods in org.hkijena.jipipe.extensions.imagej2 that return types with arguments of type JIPipeOutputSlot

Modifier and Type	Method and Description
List<JIPipeOutputSlot>	ImageJ2OpNodeInfo.getOutputSlots()

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagej2.algorithms

Classes in org.hkijena.jipipe.extensions.imagej2.algorithms with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	CreateIJ2OutOfBoundsFactoryAlgorithm
class	CreateIJ2ShapeAlgorithm

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	AnnotateByImageStatisticsExpressionAlgorithm Wrapper around RoiManager
class	ImageStatisticsAlgorithm Wrapper around RoiManager
class	ImageStatisticsExpressionAlgorithm Wrapper around RoiManager

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	RollingBallBackgroundEstimator2DAlgorithm Wrapper around RankFilters

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	BinarizeAlgorithm
class	BitwiseLogicalOperationAlgorithm
class	ConditionalInverterAlgorithm
class	ConnectedComponentsLabeling2DAlgorithm
class	ConnectedComponentsLabeling3DAlgorithm
class	ConvexifyAlgorithm
class	DistanceTransformWatershed2DAlgorithm Wrapper around EDM
class	KeepLargestRegionAlgorithm
class	RemoveLargestRegionAlgorithm
class	UltimateErodedPoints2DAlgorithm Wrapper around EDM
class	VolumeOpening2DAlgorithm
class	VolumeOpening3DAlgorithm
class	Voronoi2DAlgorithm Wrapper around EDM

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	BoxFilter2DAlgorithm Wrapper around ImageProcessor
class	BoxFilter3DAlgorithm Wrapper around GaussianBlur
class	GaussianBlur2DAlgorithm Wrapper around GaussianBlur
class	GaussianBlur3DAlgorithm Wrapper around GaussianBlur
class	MedianBlurFilter2DAlgorithm Wrapper around RankFilters
class	MedianBlurFilter3DAlgorithm Wrapper around GaussianBlur
class	MedianBlurGreyscale8U2DAlgorithm Wrapper around ImageProcessor
class	MedianBlurRGB2DAlgorithm Wrapper around ImageProcessor

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.calibration

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.calibration with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	DrawScaleBarAlgorithm
class	SetPhysicalDimensionsAlgorithm
class	SetPhysicalDimensionsByAnnotationsAlgorithm
class	SetPhysicalDimensionsByExpressionsAlgorithm

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	ArrangeChannelsAlgorithm Wrapper around ChannelArranger
class	BlendImagesAlgorithm
class	ColorToGreyscaleExpression2D
class	CombineChannelsToRGBAlgorithm
class	InvertColorsAlgorithm Wrapper around ImageProcessor
class	MergeChannelsAlgorithm Wrapper around ImageProcessor
class	NewSplitChannelsAlgorithm Wrapper around ChannelSplitter
class	OverlayImagesAlgorithm Deprecated. Use BlendImagesAlgorithm instead
class	RenderImageToRGBAlgorithm
class	SetToColorAlgorithm
class	SetToValueAlgorithm
class	SplitChannelsAlgorithm Deprecated.
class	SplitRGBChannelsAlgorithm

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	CLAHEContrastEnhancer Applies CLAHE image enhancing
class	HistogramContrastEnhancerAlgorithm This class is based on ContrastEnhancer This class is not very portable, so I adapted the code here
class	IlluminationCorrection2DAlgorithm Applies illumination correction

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convert

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convert with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	ConvertImageAlgorithm
class	ConvertImageTo16BitAlgorithm
class	ConvertImageTo32BitAlgorithm
class	ConvertImageTo8BitAlgorithm
class	ConvertImageToHSBAlgorithm
class	ConvertImageToLABAlgorithm
class	ImageToMatrixAlgorithm Algorithm that generates ResultsTableData as histogram
class	ImageToTableAlgorithm Algorithm that generates ResultsTableData as histogram
class	MatrixToImageAlgorithm
class	TableToImageAlgorithm

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	ConvolveByImage2DAlgorithm Wrapper around Convolver
class	ConvolveByParameter2DAlgorithm Wrapper around Convolver

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	ImageStackFromFolder Loads an image data from a file via IJ.openFile()
class	OMEImageFromImagePlus

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	CreateStackAlgorithm Wrapper around ImageProcessor
class	ExpressionSlicerAlgorithm
class	HyperstackSlicerAlgorithm
class	InputImagesToMontage
class	Merge2DToHyperstackAlgorithm
class	MontageToStackAlgorithm Implementation of MontageMaker
class	NewZProjectorAlgorithm Wrapper around ZProjector
class	ReorderDimensionsAlgorithm Algorithm that reorders Hyperstack dimensions
class	ResliceAlgorithm
class	SplitByDimensionAlgorithm
class	StackCombinerAlgorithm
class	StackInverterAlgorithm Wrapper around ImageProcessor
class	StackSplitterAlgorithm Wrapper around ChannelArranger
class	StackTo2DAlgorithm Wrapper around ImageProcessor
class	StackToDimensionMergerAlgorithm Wrapper around ImageProcessor
class	StackToMontageAlgorithm Implementation of MontageMaker
class	ZProjectorAlgorithm Wrapper around ZProjector

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	CannyEdgeDetectorAlgorithm This is the JIPipe version of the ImageJ plugin ...
class	LaplacianEdgeDetectorAlgorithm Wrapper around ImageProcessor
class	SobelEdgeDetectorAlgorithm Wrapper around ImageProcessor

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	DifferenceOfGaussian2DAlgorithm Wrapper around GaussianBlur
class	DirectionalFilter2DAlgorithm
class	FrangiVesselnessFeatures Applies CLAHE image enhancing
class	LaplacianOfGaussian2DAlgorithm Based on code by Dimiter Prodanov ...
class	LocalMaxima2DAlgorithm Wrapper around MaximumFinder
class	MeijeringVesselness2DFeatures Applies CLAHE image enhancing

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	FFT2DForwardTransform Applies a FFT forward transformation
class	FFT2DInverseTransform Applies a FFT forward transformation
class	FFT2DSwapQuadrants Applies a FFT forward transformation

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.forms

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.forms with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	DrawMaskAlgorithm
class	DrawROIAlgorithm

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	GenerateLUTImageFromColorMap Wrapper around ImageProcessor
class	GenerateMissingImageFromMathExpression2D Wrapper around ImageProcessor
class	GenerateMissingTablesAlgorithm
class	GenerateMissingZeroImage Wrapper around ImageProcessor
class	GenerateStructureElement2DAlgorithm Wrapper around ImageProcessor
class	GenerateStructureElement3DAlgorithm Wrapper around ImageProcessor
class	GenerateZeroImage Wrapper around ImageProcessor
class	ImageFromMatrix2DAlgorithm Wrapper around Convolver

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	ExportImage2Algorithm
class	ExportImageAlgorithm
class	ExportROIAlgorithm
class	ExportTableAlgorithm
class	ExportTableAsXLSXAlgorithm
class	ImagePlusFromGUI Imports ImagePlusData from the GUI
class	ImagePlusToGUI Imports ImagePlusData from the GUI
class	ResultsTableFromGUI Imports ImagePlusData from the GUI
class	ResultsTableToGUI Imports ImagePlusData from the GUI
class	ROIFromGUI Imports ImagePlusData from the GUI
class	ROIToGUI Imports ImagePlusData from the GUI
class	RunImageJImporterAlgorithm

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.labels

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.labels with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	CropLabelsAlgorithm
class	DilateLabelsAlgorithm
class	ExpandLabelsAlgorithm
class	ExtractLabelStatisticsAlgorithm
class	GetLabelBoundariesAlgorithm
class	KeepLargestLabelAlgorithm
class	LabelsToRGBAlgorithm
class	LabelsToROIAlgorithm
class	MergeLabelsAlgorithm
class	MergeSmallLabelsAlgorithm
class	RemapLabelsAlgorithm
class	ReplaceLabelsAlgorithm

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.labels.filter

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.labels.filter with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	FilterLabelsByExpression2DAlgorithm
class	FilterLabelsByExpression3DAlgorithm
class	FilterLabelsByIdAlgorithm
class	FilterLabelsByMaskAlgorithm
class	FilterLabelsByStatisticsAlgorithm Wrapper around RoiManager
class	RemoveBorderLabelsAlgorithm
class	RemoveLargestLabelAlgorithm

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	ApplyLUTAlgorithm
class	LUTInverterAlgorithm
class	RemoveLUTAlgorithm
class	SetLUTFromColorMapAlgorithm
class	SetLUTFromColorsAlgorithm
class	SetLUTFromImageAlgorithm

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	ApplyColorMathExpression2DExpression
class	ApplyMath2DAlgorithm Wrapper around ImageProcessor
class	ApplyMathExpression2DAlgorithm Wrapper around ImageProcessor
class	ApplyTransform2DAlgorithm Wrapper around ImageProcessor
class	ApplyVectorMathExpression2DAlgorithm Wrapper around ImageProcessor
class	DivideByMaximumAlgorithm Wrapper around ImageProcessor
class	GenerateFromMathExpression2D Wrapper around ImageProcessor
class	GenerateVectorFromMathExpression Wrapper around ImageProcessor
class	Hessian2DAlgorithm Wrapper around EDM
class	ImageCalculator2DAlgorithm Wrapper around ImageProcessor
class	ImageCalculator2DExpression
class	RemoveNaNFilter2DAlgorithm Wrapper around RankFilters
class	RoundFloatImageAlgorithm

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.distancemap

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.distancemap with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	ApplyDistanceTransform2DAlgorithm Wrapper around EDM
class	ChamferDistanceMap2DAlgorithm
class	ChamferDistanceMap3DAlgorithm
class	GeodesicDistanceMap2DAlgorithm
class	LabelChamferDistanceMap3DAlgorithm

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.local

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.local with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	ExtendedMaxima2DAlgorithm
class	ExtendedMaxima3DAlgorithm
class	ExtendedMinima2DAlgorithm
class	ExtendedMinima3DAlgorithm
class	ImposeMaxima2DAlgorithm
class	ImposeMaxima3DAlgorithm
class	LocalImageCalculator2DExpression
class	LocalMaximumFilter2DAlgorithm Wrapper around RankFilters
class	LocalMaximumFilter3DAlgorithm Wrapper around RankFilters
class	LocalMinimumFilter2DAlgorithm Wrapper around RankFilters
class	LocalMinimumFilter3DAlgorithm Wrapper around RankFilters
class	LocalVarianceFilter2DAlgorithm Wrapper around RankFilters
class	LocalVarianceFilter3DAlgorithm Wrapper around RankFilters
class	RegionalMaxima2DAlgorithm
class	RegionalMaxima3DAlgorithm
class	RegionalMinima2DAlgorithm
class	RegionalMinima3DAlgorithm

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	DataToPreviewAlgorithm
class	RenderJIPipeProjectAlgorithm

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	FindHoles2DAlgorithm
class	GrayscaleAttributeFiltering2DAlgorithm
class	GrayscaleAttributeFiltering3DAlgorithm
class	MorphologicalReconstruction2DAlgorithm
class	MorphologicalReconstruction3DAlgorithm
class	Morphology2DAlgorithm Wrapper around ImageProcessor
class	Morphology3DAlgorithm Wrapper around ImageProcessor
class	MorphologyBinary2DAlgorithm Wrapper around ImageProcessor
class	MorphologyFillHoles2DAlgorithm Wrapper around ImageProcessor
class	MorphologyInternalGradient2DAlgorithm Wrapper around ImageProcessor
class	MorphologyOutline2DAlgorithm Wrapper around ImageProcessor
class	MorphologySkeletonize2DAlgorithm Wrapper around ImageProcessor
class	MorphologySkeletonize3DAlgorithm

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	AddNoise2DAlgorithm Wrapper around ImageProcessor
class	AddSaltAndPepperNoise2DAlgorithm Wrapper around ImageProcessor
class	DespeckleFilter2DAlgorithm Wrapper around RankFilters
class	RemoveOutliersFilter2DAlgorithm Wrapper around RankFilters

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.opticalflow

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.opticalflow with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	MSEBlockFlowAlgorithm Adapted from MSEBlockFlow, as the methods there are all protected/private
class	MSEGaussianFlowAlgorithm Adapted from MSEGaussianFlow, as the methods there are all protected/private
class	PMCCBlockFlowAlgorithm Adapted from PMCCBlockFlow, as the methods there are all protected/private

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.overlay

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.overlay with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	ExtractOverlayAlgorithm
class	RemoveOverlayAlgorithm
class	RenderOverlayAlgorithm Wrapper around RoiDrawer
class	SetOverlayAlgorithm

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	CropToRoiAlgorithm
class	ExtractImageInRoiAlgorithm
class	GetRoiImageAlgorithm Wrapper around RoiManager
class	RoiCalculatorAlgorithm Wrapper around RoiManager
class	SetRoiImageAlgorithm Wrapper around RoiManager
class	SplitRoiConnectedComponentsAlgorithm
class	UnsetRoiImageAlgorithm Wrapper around RoiManager

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.annotations

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.annotations with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	RoiPropertiesToAnnotationsAlgorithm

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.assemble

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.assemble with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	AssembleExtractedROIAlgorithm
class	ExtractFromROIAlgorithm

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.convert

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.convert with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	ROIToLabelsByNameAlgorithm
class	ROIToLabelsExpressionAlgorithm
class	RoiToMaskAlgorithm Wrapper around RoiManager
class	RoiToRGBAlgorithm Wrapper around RoiDrawer
class	UnreferencedRoiToMaskAlgorithm Wrapper around RoiManager
class	UnreferencedRoiToRGBAlgorithm Wrapper around RoiManager

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.draw

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.draw with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	DrawOvalRoiAlgorithm
class	DrawRectangleRoiAlgorithm
class	DrawScaleBarRoiAlgorithm
class	DrawTextRoiAlgorithm

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.filter

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.filter with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	FilterRoiByNameAlgorithm Wrapper around RoiManager
class	FilterRoiByStatisticsAlgorithm Wrapper around RoiManager
class	FilterRoiByStatisticsScriptAlgorithm Wrapper around RoiManager
class	FilterROIListsAlgorithm
class	RemoveBorderRoisAlgorithm Wrapper around RoiManager
class	SliceROIListAlgorithm Wrapper around RoiManager

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.generate

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.generate with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	AppendRectangularRoiAlgorithm Deprecated.
class	DefineRectangularRoiAlgorithm Deprecated.
class	GenerateMissingRoiListsAlgorithm
class	MaskToRoiAlgorithm
class	ReferencedAppendRectangularRoiAlgorithm Deprecated.
class	ReferencedDefineRectangularRoiAlgorithm Deprecated.
class	TableToCircularROIAlgorithm Wrapper around RoiManager
class	TableToRectangularROIAlgorithm Wrapper around RoiManager

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.measure

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.measure with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	CountROIAlgorithm
class	RoiStatisticsAlgorithm Wrapper around RoiManager

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.merge

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.merge with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	AddRoiListsAlgorithm Wrapper around RoiManager
class	FilterAndMergeRoiByStatisticsScriptAlgorithm Wrapper around RoiManager
class	MergeRoiListsAlgorithm Wrapper around RoiManager

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.modify

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.modify with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm
class	ChangeRoiPropertiesAlgorithm Wrapper around RoiManager
class	ChangeRoiPropertiesFromAnnotationsAlgorithm Wrapper around RoiManager
class	ChangeRoiPropertiesFromExpressionsAlgorithm Wrapper around RoiManager
class	ColorRoiByNameAlgorithm
class	ColorRoiByStatisticsAlgorithm Wrapper around RoiManager
class	OutlineRoiAlgorithm Wrapper around RoiManager
class	ReorderRoiDimensionsAlgorithm Algorithm that reorders Hyperstack dimensions
class	RoiFloodFillAlgorithm Wrapper around RoiManager
class	RoiToCentroidAlgorithm Wrapper around RoiManager
class	ScaleRoiAlgorithm Wrapper around RoiManager

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.properties

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.properties with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	ExtractROIMetadataAlgorithm
class	RemoveROIMetadataAlgorithm
class	SetRoiMetadataByStatisticsAlgorithm Wrapper around RoiManager
class	SetROIMetadataFromTableAlgorithm

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.sort

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.sort with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	SortAndExtractRoiByStatisticsAlgorithm Deprecated.
class	SortAndExtractRoiByStatisticsAlgorithm2 Wrapper around RoiManager
class	SortRoiListByExpressionsAndMeasurementsAlgorithm

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.split

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.split with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	ExplodeRoiAlgorithm Wrapper around RoiManager
class	SplitRoiAlgorithm Wrapper around RoiManager

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.segment

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.segment with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	ClassicWatershedSegmentationAlgorithm
class	SeededWatershedSegmentationAlgorithm

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.sharpen

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.sharpen with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	LaplacianSharpen2DAlgorithm Wrapper around ImageProcessor

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	AverageKeyValueThresholdStatisticsGenerator
class	FastKeyValueThresholdStatisticsGenerator
class	HistogramGenerator Algorithm that generates ResultsTableData as histogram
class	KeyValueAveragesGenerator
class	KeyValueHistogramGenerator
class	KeyValueThresholdPartitionAveragesGenerator
class	KeyValueThresholdPartitionGenerator
class	KeyValueThresholdStatisticsGenerator

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	AutoThreshold2DAlgorithm Thresholding node that thresholds via an auto threshold
class	BrightSpotsSegmentation2DAlgorithm Applies Bright spots segmentation
class	CustomAutoThreshold2D16UAlgorithm Thresholding node that thresholds via an auto threshold
class	CustomAutoThreshold2D32FAlgorithm Thresholding node that thresholds via an auto threshold
class	CustomAutoThreshold2D8UAlgorithm Thresholding node that thresholds via an auto threshold
class	HessianSegmentation2DAlgorithm Segments using a Hessian
class	InternalGradientSegmentation2DAlgorithm Internal gradient segmenter
class	ManualThreshold16U2DAlgorithm Wrapper around ImageProcessor
class	ManualThreshold32F2DAlgorithm Wrapper around ImageProcessor
class	ManualThreshold8U2DAlgorithm Wrapper around ImageProcessor
class	PercentileThreshold8U2DAlgorithm Wrapper around ImageProcessor
class	ThresholdByAnnotation2DAlgorithm Wrapper around ImageProcessor

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.color

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.color with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	ColorThresholdExpression2D
class	ManualHSBThreshold2DAlgorithm
class	ManualLABThreshold2DAlgorithm
class	ManualRGBThreshold2DAlgorithm

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.local

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.local with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	BernsenLocalAutoThreshold2DAlgorithm Segmenter node that thresholds via an auto threshold Based on code from Auto_Local_Threshold
class	ContrastLocalAutoThreshold2DAlgorithm Segmenter node that thresholds via an auto threshold Based on code from Auto_Local_Threshold
class	LocalAutoThreshold2DAlgorithm Segmenter node that thresholds via an auto threshold Based on code from Auto_Local_Threshold
class	NiblackLocalAutoThreshold2DAlgorithm Segmenter node that thresholds via an auto threshold Based on code from Auto_Local_Threshold
class	PhansalkarLocalAutoThreshold2DAlgorithm Segmenter node that thresholds via an auto threshold Based on code from Auto_Local_Threshold
class	SauvolaLocalAutoThreshold2DAlgorithm Segmenter node that thresholds via an auto threshold Based on code from Auto_Local_Threshold

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform

Classes in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	AddBorder2DAlgorithm
class	MergeImagesAlgorithm
class	TileImage2DAlgorithm
class	TransformCrop2DAlgorithm Wrapper around ImageProcessor
class	TransformEqualCanvasSize2DAlgorithm
class	TransformEqualizeDimensionsAlgorithm
class	TransformExpandCanvas2DAlgorithm
class	TransformFlip2DAlgorithm Wrapper around ImageProcessor
class	TransformRotate2DAlgorithm Wrapper around ImageProcessor
class	TransformScale2DAlgorithm Wrapper around ImageProcessor
class	TransformScale3DAlgorithm Wrapper around ImageProcessor
class	TransformSetHyperstackDimensionsAlgorithm
class	UnTileImage2DAlgorithm
class	Warp2DAlgorithm

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms

Classes in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	BioFormatsExporter
class	DisplayRangeCalibrationAlgorithm
class	ImagePropertiesToAnnotationAlgorithm Adds data annotations that contain the image properties
class	ImageTypeConverter Converts ImageJ data type into each other
class	SetBioFormatsExporterSettings

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.color

Classes in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.color with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	ToHSBColorSpaceConverterAlgorithm
class	ToLABColorSpaceConverterAlgorithm
class	ToRGBColorSpaceConverterAlgorithm

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.datasources

Classes in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.datasources with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	BioFormatsImporter BioFormats importer wrapper
class	ImagePlusFromFile Loads an image data from a file via IJ.openFile()
class	ImportLUTAsRGBFromFile
class	ResultsTableFromFile Imports ResultsTableData from a file
class	ROIDataFromFile Loads ROI data from a file via IJ.openFile()
class	ROIDataFromOMEImage Loads ROI data from a file via IJ.openFile()

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.multiparameters.nodes

Classes in org.hkijena.jipipe.extensions.multiparameters.nodes with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	AnnotationsToParametersAlgorithm
class	ConvertParametersToTableAlgorithm
class	DefineParametersAlgorithm Generates ParametersData objects
class	DefineParametersTableAlgorithm Generates ParametersData objects
class	ExtractParametersAlgorithm
class	GenerateParametersFromExpressionAlgorithm
class	MergeParametersAlgorithm
class	ParametersToAnnotationsAlgorithm

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.omero.algorithms

Classes in org.hkijena.jipipe.extensions.omero.algorithms with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	DownloadOMEROImageAlgorithm
class	DownloadOMEROTableAlgorithm
class	UploadOMEROImageAlgorithm

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.omero.datasources

Classes in org.hkijena.jipipe.extensions.omero.datasources with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	OMERODatasetReferenceDataSource
class	OMEROFindDatasetAlgorithm
class	OMEROFindGroupAlgorithm
class	OMEROFindImageAlgorithm
class	OMEROFindProjectAlgorithm
class	OMEROGroupReferenceDataSource
class	OMEROImageReferenceDataSource
class	OMEROProjectReferenceDataSource

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.omnipose.algorithms

Classes in org.hkijena.jipipe.extensions.omnipose.algorithms with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	OmniposeTrainingAlgorithm

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.plots.nodes

Classes in org.hkijena.jipipe.extensions.plots.nodes with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	PlotTablesAlgorithm Deprecated. Instead, the new dynamically generated plotting should be utilized

Methods in org.hkijena.jipipe.extensions.plots.nodes that return types with arguments of type JIPipeOutputSlot

Modifier and Type	Method and Description
List<JIPipeOutputSlot>	PlotTables2AlgorithmInfo.getOutputSlots()

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.r.algorithms

Classes in org.hkijena.jipipe.extensions.r.algorithms with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	ImportRDatasetAlgorithm

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.strings.datasources

Classes in org.hkijena.jipipe.extensions.strings.datasources with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	StringDefinitionDataSource

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.tables.nodes

Classes in org.hkijena.jipipe.extensions.tables.nodes with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	DefineTablesAlgorithm Algorithm that annotates all data with the same annotation
class	GenerateColumnAlgorithm Algorithm that adds or replaces a column by a generated value
class	GenerateTableFromExpressionAlgorithm Algorithm that adds or replaces a column by a generated value
class	IntegrateColumnsAlgorithm Algorithm that integrates columns
class	ModifyAndMergeTablesScript Algorithm that annotates all data with the same annotation
class	ModifyTableColumnNamesAlgorithm
class	ModifyTablesScript Algorithm that annotates all data with the same annotation
class	TablesFromScript Algorithm that annotates all data with the same annotation

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.tables.nodes.annotations

Classes in org.hkijena.jipipe.extensions.tables.nodes.annotations with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	AddAnnotationColumnsAlgorithm Algorithm that integrates columns
class	AnnotateByTablePropertiesAlgorithm
class	AnnotateDataWithTableValues
class	ConvertAnnotationTableToAnnotatedTables Algorithm that integrates columns

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.tables.nodes.columns

Classes in org.hkijena.jipipe.extensions.tables.nodes.columns with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	ApplyExpressionToColumnsAlgorithm Algorithm that integrates columns
class	ColumnsToAnnotationsAlgorithm
class	ColumnToNumericAlgorithm Algorithm that removes columns
class	ColumnToStringAlgorithm Algorithm that removes columns
class	ConvertColumnsAlgorithm Algorithm that integrates columns
class	RemoveColumnAlgorithm Algorithm that removes columns
class	RenameSingleColumnsAlgorithm Algorithm that removes columns
class	RenameTableColumnsAlgorithm Algorithm that removes columns
class	RenameTableColumnsToAnnotationAlgorithm Algorithm that removes columns
class	SortTableColumnsAlgorithm Algorithm that integrates columns

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.tables.nodes.filter

Classes in org.hkijena.jipipe.extensions.tables.nodes.filter with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	FilterTableRowsAlgorithm Algorithm that integrates columns
class	FilterTablesAlgorithm Algorithm that integrates columns
class	SliceTableRowsAlgorithm

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.tables.nodes.merge

Classes in org.hkijena.jipipe.extensions.tables.nodes.merge with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	MergeColumnsAlgorithm Algorithm that integrates columns
class	MergeTableColumnsSimpleAlgorithm Algorithm that integrates columns
class	MergeTableColumnsSupplementAlgorithm Algorithm that integrates columns
class	MergeTableRowsAlgorithm Algorithm that integrates columns

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.tables.nodes.rows

Classes in org.hkijena.jipipe.extensions.tables.nodes.rows with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	AddMissingRowsInSeriesAlgorithm
class	ApplyExpressionPerRowAlgorithm
class	SortTableRowsAlgorithm Algorithm that integrates columns

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.tables.nodes.split

Classes in org.hkijena.jipipe.extensions.tables.nodes.split with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	SplitTableByColumnsAlgorithm Algorithm that integrates columns
class	SplitTableIntoColumnsAlgorithm Algorithm that integrates columns
class	SplitTableIntoRowsAlgorithm Algorithm that integrates columns

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.tables.nodes.transform

Classes in org.hkijena.jipipe.extensions.tables.nodes.transform with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	HistogramAlgorithm
class	MeltTableAlgorithm Algorithm that integrates columns
class	UnMeltTableAlgorithm

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.utils.algorithms

Classes in org.hkijena.jipipe.extensions.utils.algorithms with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	DataBatchSlicer
class	DataSlicer
class	ImportJIPipeSlotFolderAlgorithm
class	RunExpressionAlgorithm
class	SelectDataTableRowsAlgorithm
class	SetVirtualStateAlgorithm
class	SleepAlgorithm
class	SortRowsByAnnotationsAlgorithm
class	SortRowsByExpressionAlgorithm
class	ToDataStringAlgorithm
class	UsePlaceholderForMissingDataAlgorithm

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.utils.algorithms.datatable

Classes in org.hkijena.jipipe.extensions.utils.algorithms.datatable with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	AnnotateWithDataTableProperties
class	ExtractTableAlgorithm
class	MergeDataToTableAlgorithm
class	PullDataTableAnnotations
class	PushDataTableAnnotations

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.utils.algorithms.distribute

Classes in org.hkijena.jipipe.extensions.utils.algorithms.distribute with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	DistributeDataRandomlyByCountAlgorithm
class	DistributeDataRandomlyByPercentageAlgorithm

Uses of JIPipeOutputSlot in org.hkijena.jipipe.extensions.utils.algorithms.meta

Classes in org.hkijena.jipipe.extensions.utils.algorithms.meta with annotations of type JIPipeOutputSlot

Modifier and Type	Class and Description
class	GetJIPipeSlotFolderAlgorithm
class	JIPipeProjectParameterDefinition
class	PathsToJIPipeProjectParametersAlgorithm
class	RunJIPipeProjectAlgorithm Runs a JIPipe project