Uses of Class
org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

Packages that use JIPipeSimpleIteratingAlgorithm

Package	Description
org.hkijena.jipipe.api.nodes
org.hkijena.jipipe.extensions.annotation.algorithms
org.hkijena.jipipe.extensions.annotation.datasources
org.hkijena.jipipe.extensions.cellpose.algorithms
org.hkijena.jipipe.extensions.clij2.algorithms
org.hkijena.jipipe.extensions.filesystem.algorithms
org.hkijena.jipipe.extensions.filesystem.datasources
org.hkijena.jipipe.extensions.ijtrackmate.nodes.converters
org.hkijena.jipipe.extensions.ijtrackmate.nodes.detectors
org.hkijena.jipipe.extensions.ijtrackmate.nodes.spots
org.hkijena.jipipe.extensions.ijtrackmate.nodes.tracks
org.hkijena.jipipe.extensions.imagej2.algorithms
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.calibration
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convert
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.labels
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.labels.filter
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.distancemap
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.local
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.opticalflow
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.overlay
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.annotations
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.convert
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.filter
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.generate
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.modify
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.properties
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.split
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.segment
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.sharpen
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.color
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.local
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform
org.hkijena.jipipe.extensions.imagejdatatypes.algorithms
org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.color
org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.datasources
org.hkijena.jipipe.extensions.multiparameters.nodes
org.hkijena.jipipe.extensions.omero.algorithms
org.hkijena.jipipe.extensions.omero.datasources
org.hkijena.jipipe.extensions.python.algorithms
org.hkijena.jipipe.extensions.r.algorithms
org.hkijena.jipipe.extensions.strings.datasources
org.hkijena.jipipe.extensions.tables.nodes
org.hkijena.jipipe.extensions.tables.nodes.annotations
org.hkijena.jipipe.extensions.tables.nodes.columns
org.hkijena.jipipe.extensions.tables.nodes.filter
org.hkijena.jipipe.extensions.tables.nodes.rows
org.hkijena.jipipe.extensions.tables.nodes.split
org.hkijena.jipipe.extensions.tables.nodes.transform
org.hkijena.jipipe.extensions.utils.algorithms
org.hkijena.jipipe.extensions.utils.algorithms.datatable
org.hkijena.jipipe.extensions.utils.algorithms.meta

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.api.nodes

Constructors in org.hkijena.jipipe.api.nodes with parameters of type JIPipeSimpleIteratingAlgorithm

Constructor and Description
JIPipeSimpleIteratingAlgorithm(JIPipeSimpleIteratingAlgorithm other) Copies the algorithm

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.annotation.algorithms

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.annotation.algorithms

Modifier and Type	Class and Description
class	AnnotateByExpression Algorithm that annotates all data with the same annotation
class	AnnotateWithDataString Generates annotations from filenames
class	AnnotateWithSourceSlot Generates annotations from filenames
class	DataAnnotationToStringAnnotation
class	ExtractAndReplaceAnnotation Generates annotations from filenames
class	ExtractDataAnnotation
class	GenerateUniqueAnnotation Generates annotations from filenames
class	ModifyAnnotationScript Algorithm that annotates all data with the same annotation
class	RemoveAnnotationAlgorithm Removes a specified annotation
class	RemoveDataAnnotations
class	RenameAnnotation Generates annotations from filenames
class	RenameDataAnnotation Generates annotations from filenames
class	SetSingleAnnotation Algorithm that annotates all data with the same annotation
class	SimplifyAnnotationsAlgorithm
class	SplitByAnnotationScript Algorithm that annotates all data with the same annotation

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.annotation.datasources

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.annotation.datasources

Modifier and Type	Class and Description
class	AnnotationTableFromFile Imports AnnotationTableData from a file

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.cellpose.algorithms

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.cellpose.algorithms

Modifier and Type	Class and Description
class	ImportCellposeModelAlgorithm
class	ImportCellposeSizeModelAlgorithm

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.clij2.algorithms

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.clij2.algorithms

Modifier and Type	Class and Description
class	Clij2ExecuteKernelSimpleIterating
class	Clij2PullAlgorithm
class	Clij2PushAlgorithm

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.filesystem.algorithms

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.filesystem.algorithms

Modifier and Type	Class and Description
class	AnnotateWithPathProperties
class	AnnotationTableToPaths Filters input files
class	AnnotationToPath Filters input files
class	ConcatenateByParameter Applies subfolder navigation to each input folder
class	ConvertDataToOutputPath Applies subfolder navigation to each input folder
class	CreateDirectory Applies subfolder navigation to each input folder
class	ExtractFileName Applies subfolder navigation to each input folder
class	ExtractParent Applies subfolder navigation to each input folder
class	FilterPaths Filters input files
class	ImportDataRowFolder
class	ImportDataTableArchive
class	ImportDataTableDirectory
class	ListFiles Algorithm that lists files in each folder
class	ListSubfolders Algorithms that lists the sub folders for each input folder
class	ModifyPath
class	RelativizeByParameter Applies subfolder navigation to each input folder
class	RenameByString Applies subfolder navigation to each input folder
class	SimpleFileAnnotationGenerator Generates annotations from filenames
class	SimpleFolderAnnotationGenerator Algorithm that generates annotations from folder names
class	SimplePathAnnotationGenerator Algorithm that generates annotations from folder names

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.filesystem.datasources

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.filesystem.datasources

Modifier and Type	Class and Description
class	DownloadFilesDataSource
class	PathFromUserDataSource

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.ijtrackmate.nodes.converters

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.ijtrackmate.nodes.converters

Modifier and Type	Class and Description
class	ConvertSpotsToRoiNode
class	ConvertTracksToRoiNode

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.ijtrackmate.nodes.detectors

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.ijtrackmate.nodes.detectors

Modifier and Type	Class and Description
class	CreateSpotDetectorNode
class	CreateSpotTrackerNode

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.ijtrackmate.nodes.spots

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.ijtrackmate.nodes.spots

Modifier and Type	Class and Description
class	MeasureSpotsNode
class	SplitSpotsNode
class	SpotFilterNode

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.ijtrackmate.nodes.tracks

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.ijtrackmate.nodes.tracks

Modifier and Type	Class and Description
class	MeasureBranchesNode
class	MeasureEdgesNode
class	MeasureTracksNode
class	SplitTracksNode
class	TrackFilterNode
class	TrackSchemeRendererNode

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagej2.algorithms

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagej2.algorithms

Modifier and Type	Class and Description
class	CreateIJ2OutOfBoundsFactoryAlgorithm
class	CreateIJ2ShapeAlgorithm

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze

Modifier and Type	Class and Description
class	FindParticles2D Converts a mask to ROI and ROI measurements

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background

Modifier and Type	Class and Description
class	RollingBallBackgroundEstimator2DAlgorithm Wrapper around RankFilters

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary

Modifier and Type	Class and Description
class	BinarizeAlgorithm
class	ConditionalInverterAlgorithm
class	ConnectedComponentsLabeling2DAlgorithm
class	ConnectedComponentsLabeling3DAlgorithm
class	ConvexifyAlgorithm
class	DistanceTransformWatershed2DAlgorithm Wrapper around EDM
class	KeepLargestRegionAlgorithm
class	RemoveLargestRegionAlgorithm
class	UltimateErodedPoints2DAlgorithm Wrapper around EDM
class	VolumeOpening2DAlgorithm
class	VolumeOpening3DAlgorithm
class	Voronoi2DAlgorithm Wrapper around EDM

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur

Modifier and Type	Class and Description
class	BoxFilter2DAlgorithm Wrapper around ImageProcessor
class	BoxFilter3DAlgorithm Wrapper around GaussianBlur
class	GaussianBlur2DAlgorithm Wrapper around GaussianBlur
class	GaussianBlur3DAlgorithm Wrapper around GaussianBlur
class	MedianBlurFilter2DAlgorithm Wrapper around RankFilters
class	MedianBlurFilter3DAlgorithm Wrapper around GaussianBlur
class	MedianBlurGreyscale8U2DAlgorithm Wrapper around ImageProcessor
class	MedianBlurRGB2DAlgorithm Wrapper around ImageProcessor

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.calibration

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.calibration

Modifier and Type	Class and Description
class	DrawScaleBarAlgorithm
class	SetPhysicalDimensionsAlgorithm
class	SetPhysicalDimensionsByAnnotationsAlgorithm
class	SetPhysicalDimensionsByExpressionsAlgorithm

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color

Modifier and Type	Class and Description
class	ArrangeChannelsAlgorithm Wrapper around ChannelArranger
class	ColorToGreyscaleExpression2D
class	CombineChannelsToRGBAlgorithm
class	InvertColorsAlgorithm Wrapper around ImageProcessor
class	NewSplitChannelsAlgorithm Wrapper around ChannelSplitter
class	RenderImageToRGBAlgorithm
class	SplitChannelsAlgorithm Deprecated.
class	SplitRGBChannelsAlgorithm

Constructors in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color with parameters of type JIPipeSimpleIteratingAlgorithm

Constructor and Description
CombineChannelsToRGBAlgorithm(JIPipeSimpleIteratingAlgorithm other)
SplitRGBChannelsAlgorithm(JIPipeSimpleIteratingAlgorithm other)

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast

Modifier and Type	Class and Description
class	CLAHEContrastEnhancer Applies CLAHE image enhancing
class	HistogramContrastEnhancerAlgorithm This class is based on ContrastEnhancer This class is not very portable, so I adapted the code here
class	IlluminationCorrection2DAlgorithm Applies illumination correction

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convert

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convert

Modifier and Type	Class and Description
class	ConvertImageAlgorithm
class	ConvertImageTo16BitAlgorithm
class	ConvertImageTo32BitAlgorithm
class	ConvertImageTo8BitAlgorithm
class	ConvertImageToHSBAlgorithm
class	ConvertImageToLABAlgorithm
class	ImageToMatrixAlgorithm Algorithm that generates ResultsTableData as histogram
class	ImageToTableAlgorithm Algorithm that generates ResultsTableData as histogram
class	MatrixToImageAlgorithm
class	TableToImageAlgorithm

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve

Modifier and Type	Class and Description
class	ConvolveByParameter2DAlgorithm Wrapper around Convolver

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources

Modifier and Type	Class and Description
class	ImageStackFromFolder Loads an image data from a file via IJ.openFile()

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions

Modifier and Type	Class and Description
class	ExpressionSlicerAlgorithm
class	HyperstackSlicerAlgorithm
class	NewZProjectorAlgorithm Wrapper around ZProjector
class	ReorderDimensionsAlgorithm Algorithm that reorders Hyperstack dimensions
class	ResliceAlgorithm
class	SplitByDimensionAlgorithm
class	StackInverterAlgorithm Wrapper around ImageProcessor
class	StackSplitterAlgorithm Wrapper around ChannelArranger
class	StackTo2DAlgorithm Wrapper around ImageProcessor
class	ZProjectorAlgorithm Wrapper around ZProjector

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge

Modifier and Type	Class and Description
class	CannyEdgeDetectorAlgorithm This is the JIPipe version of the ImageJ plugin ...
class	LaplacianEdgeDetectorAlgorithm Wrapper around ImageProcessor
class	SobelEdgeDetectorAlgorithm Wrapper around ImageProcessor

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features

Modifier and Type	Class and Description
class	DifferenceOfGaussian2DAlgorithm Wrapper around GaussianBlur
class	DirectionalFilter2DAlgorithm
class	FrangiVesselnessFeatures Applies CLAHE image enhancing
class	LaplacianOfGaussian2DAlgorithm Based on code by Dimiter Prodanov ...
class	LocalMaxima2DAlgorithm Wrapper around MaximumFinder
class	MeijeringVesselness2DFeatures Applies CLAHE image enhancing

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft

Modifier and Type	Class and Description
class	FFT2DForwardTransform Applies a FFT forward transformation
class	FFT2DInverseTransform Applies a FFT forward transformation
class	FFT2DSwapQuadrants Applies a FFT forward transformation

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate

Modifier and Type	Class and Description
class	GenerateLUTImageFromColorMap Wrapper around ImageProcessor
class	GenerateStructureElement2DAlgorithm Wrapper around ImageProcessor
class	GenerateStructureElement3DAlgorithm Wrapper around ImageProcessor
class	GenerateZeroImage Wrapper around ImageProcessor
class	ImageFromMatrix2DAlgorithm Wrapper around Convolver

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io

Modifier and Type	Class and Description
class	ImagePlusFromGUI Imports ImagePlusData from the GUI
class	ImagePlusToGUI Imports ImagePlusData from the GUI
class	ResultsTableFromGUI Imports ImagePlusData from the GUI
class	ResultsTableToGUI Imports ImagePlusData from the GUI
class	ROIFromGUI Imports ImagePlusData from the GUI
class	ROIToGUI Imports ImagePlusData from the GUI
class	RunImageJImporterAlgorithm

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.labels

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.labels

Modifier and Type	Class and Description
class	CropLabelsAlgorithm
class	DilateLabelsAlgorithm
class	ExpandLabelsAlgorithm
class	GetLabelBoundariesAlgorithm
class	KeepLargestLabelAlgorithm
class	LabelsToRGBAlgorithm
class	LabelsToROIAlgorithm
class	RemapLabelsAlgorithm
class	ReplaceLabelsAlgorithm

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.labels.filter

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.labels.filter

Modifier and Type	Class and Description
class	FilterLabelsByExpression2DAlgorithm
class	FilterLabelsByExpression3DAlgorithm
class	FilterLabelsByIdAlgorithm
class	RemoveBorderLabelsAlgorithm
class	RemoveLargestLabelAlgorithm

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut

Modifier and Type	Class and Description
class	ApplyLUTAlgorithm
class	LUTInverterAlgorithm
class	RemoveLUTAlgorithm
class	SetLUTFromColorMapAlgorithm
class	SetLUTFromColorsAlgorithm

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Modifier and Type	Class and Description
class	ApplyColorMathExpression2DExpression
class	ApplyMath2DAlgorithm Wrapper around ImageProcessor
class	ApplyMathExpression2DAlgorithm Wrapper around ImageProcessor
class	ApplyTransform2DAlgorithm Wrapper around ImageProcessor
class	ApplyVectorMathExpression2DAlgorithm Wrapper around ImageProcessor
class	DivideByMaximumAlgorithm Wrapper around ImageProcessor
class	GenerateFromMathExpression2D Wrapper around ImageProcessor
class	GenerateVectorFromMathExpression Wrapper around ImageProcessor
class	Hessian2DAlgorithm Wrapper around EDM
class	RemoveNaNFilter2DAlgorithm Wrapper around RankFilters
class	RoundFloatImageAlgorithm

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.distancemap

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.distancemap

Modifier and Type	Class and Description
class	ApplyDistanceTransform2DAlgorithm Wrapper around EDM
class	ChamferDistanceMap2DAlgorithm
class	ChamferDistanceMap3DAlgorithm
class	LabelChamferDistanceMap3DAlgorithm

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.local

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.local

Modifier and Type	Class and Description
class	ExtendedMaxima2DAlgorithm
class	ExtendedMaxima3DAlgorithm
class	ExtendedMinima2DAlgorithm
class	ExtendedMinima3DAlgorithm
class	LocalMaximumFilter2DAlgorithm Wrapper around RankFilters
class	LocalMaximumFilter3DAlgorithm Wrapper around RankFilters
class	LocalMinimumFilter2DAlgorithm Wrapper around RankFilters
class	LocalMinimumFilter3DAlgorithm Wrapper around RankFilters
class	LocalVarianceFilter2DAlgorithm Wrapper around RankFilters
class	LocalVarianceFilter3DAlgorithm Wrapper around RankFilters
class	RegionalMaxima2DAlgorithm
class	RegionalMaxima3DAlgorithm
class	RegionalMinima2DAlgorithm
class	RegionalMinima3DAlgorithm

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc

Modifier and Type	Class and Description
class	DataToPreviewAlgorithm
class	RenderJIPipeProjectAlgorithm

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology

Modifier and Type	Class and Description
class	FindHoles2DAlgorithm
class	Morphology2DAlgorithm Wrapper around ImageProcessor
class	Morphology3DAlgorithm Wrapper around ImageProcessor
class	MorphologyBinary2DAlgorithm Wrapper around ImageProcessor
class	MorphologyFillHoles2DAlgorithm Wrapper around ImageProcessor
class	MorphologyInternalGradient2DAlgorithm Wrapper around ImageProcessor
class	MorphologyOutline2DAlgorithm Wrapper around ImageProcessor
class	MorphologySkeletonize2DAlgorithm Wrapper around ImageProcessor
class	MorphologySkeletonize3DAlgorithm

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise

Modifier and Type	Class and Description
class	AddNoise2DAlgorithm Wrapper around ImageProcessor
class	AddSaltAndPepperNoise2DAlgorithm Wrapper around ImageProcessor
class	DespeckleFilter2DAlgorithm Wrapper around RankFilters
class	RemoveOutliersFilter2DAlgorithm Wrapper around RankFilters

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.opticalflow

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.opticalflow

Modifier and Type	Class and Description
class	MSEBlockFlowAlgorithm Adapted from MSEBlockFlow, as the methods there are all protected/private
class	MSEGaussianFlowAlgorithm Adapted from MSEGaussianFlow, as the methods there are all protected/private
class	PMCCBlockFlowAlgorithm Adapted from PMCCBlockFlow, as the methods there are all protected/private

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.overlay

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.overlay

Modifier and Type	Class and Description
class	ExtractOverlayAlgorithm
class	RemoveOverlayAlgorithm
class	RenderOverlayAlgorithm Wrapper around RoiDrawer

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Modifier and Type	Class and Description
class	RoiCalculatorAlgorithm Wrapper around RoiManager
class	UnsetRoiImageAlgorithm Wrapper around RoiManager

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.annotations

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.annotations

Modifier and Type	Class and Description
class	RoiPropertiesToAnnotationsAlgorithm

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.convert

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.convert

Modifier and Type	Class and Description
class	UnreferencedRoiToMaskAlgorithm Wrapper around RoiManager
class	UnreferencedRoiToRGBAlgorithm Wrapper around RoiManager

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.filter

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.filter

Modifier and Type	Class and Description
class	FilterRoiByNameAlgorithm Wrapper around RoiManager
class	FilterROIListsAlgorithm
class	SliceROIListAlgorithm Wrapper around RoiManager

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.generate

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.generate

Modifier and Type	Class and Description
class	AppendRectangularRoiAlgorithm Deprecated.
class	MaskToRoiAlgorithm
class	TableToCircularROIAlgorithm Wrapper around RoiManager
class	TableToRectangularROIAlgorithm Wrapper around RoiManager

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.modify

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.modify

Modifier and Type	Class and Description
class	ChangeRoiPropertiesAlgorithm Wrapper around RoiManager
class	ChangeRoiPropertiesFromAnnotationsAlgorithm Wrapper around RoiManager
class	ColorRoiByNameAlgorithm
class	OutlineRoiAlgorithm Wrapper around RoiManager
class	ReorderRoiDimensionsAlgorithm Algorithm that reorders Hyperstack dimensions
class	RoiToCentroidAlgorithm Wrapper around RoiManager
class	ScaleRoiAlgorithm Wrapper around RoiManager

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.properties

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.properties

Modifier and Type	Class and Description
class	ExtractROIMetadataAlgorithm
class	RemoveROIMetadataAlgorithm

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.split

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.split

Modifier and Type	Class and Description
class	ExplodeRoiAlgorithm Wrapper around RoiManager
class	SplitRoiAlgorithm Wrapper around RoiManager

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.segment

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.segment

Modifier and Type	Class and Description
class	RidgeDetector2DAlgorithm

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.sharpen

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.sharpen

Modifier and Type	Class and Description
class	LaplacianSharpen2DAlgorithm Wrapper around ImageProcessor

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics

Modifier and Type	Class and Description
class	HistogramGenerator Algorithm that generates ResultsTableData as histogram

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold

Modifier and Type	Class and Description
class	BrightSpotsSegmentation2DAlgorithm Applies Bright spots segmentation
class	CircularHoughSegmentation2DAlgorithm Segments using a Hough circle transform
class	FastCircularHoughSegmentation2DAlgorithm Segments using a Hough circle transform This code is based on ...
class	HessianSegmentation2DAlgorithm Segments using a Hessian
class	InternalGradientSegmentation2DAlgorithm Internal gradient segmenter
class	LinesHoughDetection2DAlgorithm
class	ManualThreshold16U2DAlgorithm Wrapper around ImageProcessor
class	ManualThreshold32F2DAlgorithm Wrapper around ImageProcessor
class	ManualThreshold8U2DAlgorithm Wrapper around ImageProcessor
class	PercentileThreshold8U2DAlgorithm Wrapper around ImageProcessor
class	ThresholdByAnnotation2DAlgorithm Wrapper around ImageProcessor

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.color

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.color

Modifier and Type	Class and Description
class	ColorThresholdExpression2D
class	ManualHSBThreshold2DAlgorithm
class	ManualLABThreshold2DAlgorithm
class	ManualRGBThreshold2DAlgorithm

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.local

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.local

Modifier and Type	Class and Description
class	BernsenLocalAutoThreshold2DAlgorithm Segmenter node that thresholds via an auto threshold Based on code from Auto_Local_Threshold
class	ContrastLocalAutoThreshold2DAlgorithm Segmenter node that thresholds via an auto threshold Based on code from Auto_Local_Threshold
class	LocalAutoThreshold2DAlgorithm Segmenter node that thresholds via an auto threshold Based on code from Auto_Local_Threshold
class	NiblackLocalAutoThreshold2DAlgorithm Segmenter node that thresholds via an auto threshold Based on code from Auto_Local_Threshold
class	PhansalkarLocalAutoThreshold2DAlgorithm Segmenter node that thresholds via an auto threshold Based on code from Auto_Local_Threshold
class	SauvolaLocalAutoThreshold2DAlgorithm Segmenter node that thresholds via an auto threshold Based on code from Auto_Local_Threshold

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform

Modifier and Type	Class and Description
class	AddBorder2DAlgorithm
class	TileImage2DAlgorithm
class	TransformCrop2DAlgorithm Wrapper around ImageProcessor
class	TransformFlip2DAlgorithm Wrapper around ImageProcessor
class	TransformRotate2DAlgorithm Wrapper around ImageProcessor
class	TransformRotateFree2DAlgorithm Wrapper around ImageProcessor
class	TransformScale2DAlgorithm Wrapper around ImageProcessor
class	TransformScale3DAlgorithm Wrapper around ImageProcessor
class	TransformSetHyperstackDimensionsAlgorithm

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms

Modifier and Type	Class and Description
class	BioFormatsExporter
class	DisplayRangeCalibrationAlgorithm
class	ImagePropertiesToAnnotationAlgorithm Adds data annotations that contain the image properties
class	SetBioFormatsExporterSettings

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.color

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.color

Modifier and Type	Class and Description
class	ColorSpaceConverterAlgorithm
class	ToHSBColorSpaceConverterAlgorithm
class	ToLABColorSpaceConverterAlgorithm
class	ToRGBColorSpaceConverterAlgorithm

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.datasources

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.datasources

Modifier and Type	Class and Description
class	BioFormatsImporter BioFormats importer wrapper
class	ImagePlusFromFile Loads an image data from a file via IJ.openFile()
class	ImportLUTAsRGBFromFile
class	ResultsTableFromFile Imports ResultsTableData from a file
class	ROIDataFromFile Loads ROI data from a file via IJ.openFile()
class	ROIDataFromOMEImage Loads ROI data from a file via IJ.openFile()

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.multiparameters.nodes

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.multiparameters.nodes

Modifier and Type	Class and Description
class	ConvertParametersToTableAlgorithm
class	GenerateParametersFromExpressionAlgorithm

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.omero.algorithms

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.omero.algorithms

Modifier and Type	Class and Description
class	DownloadOMEROImageAlgorithm
class	DownloadOMEROTableAlgorithm

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.omero.datasources

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.omero.datasources

Modifier and Type	Class and Description
class	OMERODatasetReferenceDataSource
class	OMEROFindProjectAlgorithm
class	OMEROGroupReferenceDataSource
class	OMEROImageReferenceDataSource
class	OMEROProjectReferenceDataSource

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.python.algorithms

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.python.algorithms

Modifier and Type	Class and Description
class	SimpleIteratingJythonScriptAlgorithm An algorithm that allows to run Python code

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.r.algorithms

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.r.algorithms

Modifier and Type	Class and Description
class	ImportRDatasetAlgorithm

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.strings.datasources

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.strings.datasources

Modifier and Type	Class and Description
class	StringDefinitionDataSource

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.tables.nodes

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.tables.nodes

Modifier and Type	Class and Description
class	GenerateColumnAlgorithm Algorithm that adds or replaces a column by a generated value
class	GenerateTableFromExpressionAlgorithm Algorithm that adds or replaces a column by a generated value
class	IntegrateColumnsAlgorithm Algorithm that integrates columns
class	ModifyTableColumnNamesAlgorithm
class	ModifyTablesScript Algorithm that annotates all data with the same annotation

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.tables.nodes.annotations

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.tables.nodes.annotations

Modifier and Type	Class and Description
class	AddAnnotationColumnsAlgorithm Algorithm that integrates columns
class	AnnotateByTablePropertiesAlgorithm
class	ConvertAnnotationTableToAnnotatedTables Algorithm that integrates columns

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.tables.nodes.columns

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.tables.nodes.columns

Modifier and Type	Class and Description
class	ApplyExpressionToColumnsAlgorithm Algorithm that integrates columns
class	ColumnsToAnnotationsAlgorithm
class	ColumnToNumericAlgorithm Algorithm that removes columns
class	ColumnToStringAlgorithm Algorithm that removes columns
class	ConvertColumnsAlgorithm Algorithm that integrates columns
class	RemoveColumnAlgorithm Algorithm that removes columns
class	RenameSingleColumnsAlgorithm Algorithm that removes columns
class	RenameTableColumnsAlgorithm Algorithm that removes columns
class	RenameTableColumnsToAnnotationAlgorithm Algorithm that removes columns
class	SortTableColumnsAlgorithm Algorithm that integrates columns

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.tables.nodes.filter

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.tables.nodes.filter

Modifier and Type	Class and Description
class	FilterTableRowsAlgorithm Algorithm that integrates columns
class	FilterTablesAlgorithm Algorithm that integrates columns
class	SliceTableRowsAlgorithm

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.tables.nodes.rows

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.tables.nodes.rows

Modifier and Type	Class and Description
class	AddMissingRowsInSeriesAlgorithm
class	ApplyExpressionPerRowAlgorithm
class	SortTableRowsAlgorithm Algorithm that integrates columns

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.tables.nodes.split

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.tables.nodes.split

Modifier and Type	Class and Description
class	SplitTableByColumnsAlgorithm Algorithm that integrates columns
class	SplitTableIntoColumnsAlgorithm Algorithm that integrates columns
class	SplitTableIntoRowsAlgorithm Algorithm that integrates columns

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.tables.nodes.transform

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.tables.nodes.transform

Modifier and Type	Class and Description
class	HistogramAlgorithm
class	MeltTableAlgorithm Algorithm that integrates columns
class	UnMeltTableAlgorithm

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.utils.algorithms

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.utils.algorithms

Modifier and Type	Class and Description
class	ConverterAlgorithm Algorithm that converts any type to any other type
class	ImportJIPipeSlotFolderAlgorithm
class	RunExpressionAlgorithm
class	SetVirtualStateAlgorithm
class	ToDataStringAlgorithm

Constructors in org.hkijena.jipipe.extensions.utils.algorithms with parameters of type JIPipeSimpleIteratingAlgorithm

Constructor and Description
ConverterAlgorithm(JIPipeSimpleIteratingAlgorithm other)

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.utils.algorithms.datatable

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.utils.algorithms.datatable

Modifier and Type	Class and Description
class	AnnotateWithDataTableProperties
class	PullDataTableAnnotations
class	PushDataTableAnnotations

Uses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.utils.algorithms.meta

Subclasses of JIPipeSimpleIteratingAlgorithm in org.hkijena.jipipe.extensions.utils.algorithms.meta

Modifier and Type	Class and Description
class	GetJIPipeSlotFolderAlgorithm
class	RunJIPipeProjectAlgorithm Runs a JIPipe project