Uses of Class
org.hkijena.jipipe.api.JIPipeProgressInfo

Packages that use JIPipeProgressInfo

Package	Description
org.hkijena.jipipe
org.hkijena.jipipe.api
org.hkijena.jipipe.api.annotation
org.hkijena.jipipe.api.artifacts
org.hkijena.jipipe.api.backups
org.hkijena.jipipe.api.cache
org.hkijena.jipipe.api.compartments
org.hkijena.jipipe.api.compartments.algorithms
org.hkijena.jipipe.api.compartments.datatypes
org.hkijena.jipipe.api.compat
org.hkijena.jipipe.api.data
org.hkijena.jipipe.api.data.browser
org.hkijena.jipipe.api.data.storage
org.hkijena.jipipe.api.data.thumbnails
org.hkijena.jipipe.api.data.utils
org.hkijena.jipipe.api.environments
org.hkijena.jipipe.api.grouping
org.hkijena.jipipe.api.looping
org.hkijena.jipipe.api.nodes
org.hkijena.jipipe.api.nodes.algorithm
org.hkijena.jipipe.api.nodes.annotation
org.hkijena.jipipe.api.nodes.iterationstep
org.hkijena.jipipe.api.registries
org.hkijena.jipipe.api.run
org.hkijena.jipipe.desktop.api.environments
org.hkijena.jipipe.desktop.app.cache
org.hkijena.jipipe.desktop.app.cache.exporters
org.hkijena.jipipe.desktop.app.resultanalysis
org.hkijena.jipipe.plugins.annotation
org.hkijena.jipipe.plugins.annotation.algorithms
org.hkijena.jipipe.plugins.annotation.datasources
org.hkijena.jipipe.plugins.artifacts
org.hkijena.jipipe.plugins.batchassistant
org.hkijena.jipipe.plugins.cellpose
org.hkijena.jipipe.plugins.cellpose.algorithms
org.hkijena.jipipe.plugins.cellpose.algorithms.cp2
org.hkijena.jipipe.plugins.cellpose.algorithms.cp3
org.hkijena.jipipe.plugins.cellpose.datatypes
org.hkijena.jipipe.plugins.cellpose.legacy.algorithms
org.hkijena.jipipe.plugins.cellpose.legacy.compat
org.hkijena.jipipe.plugins.cellpose.legacy.datatypes
org.hkijena.jipipe.plugins.cellpose.utils
org.hkijena.jipipe.plugins.clij2
org.hkijena.jipipe.plugins.clij2.algorithms
org.hkijena.jipipe.plugins.clij2.compat
org.hkijena.jipipe.plugins.clij2.datatypes
org.hkijena.jipipe.plugins.core
org.hkijena.jipipe.plugins.core.data
org.hkijena.jipipe.plugins.core.nodes
org.hkijena.jipipe.plugins.dataenvironment
org.hkijena.jipipe.plugins.dev
org.hkijena.jipipe.plugins.expressions
org.hkijena.jipipe.plugins.filesystem
org.hkijena.jipipe.plugins.filesystem.algorithms.local
org.hkijena.jipipe.plugins.filesystem.algorithms.zarr
org.hkijena.jipipe.plugins.filesystem.compat
org.hkijena.jipipe.plugins.filesystem.datasources
org.hkijena.jipipe.plugins.filesystem.dataypes
org.hkijena.jipipe.plugins.forms
org.hkijena.jipipe.plugins.forms.algorithms
org.hkijena.jipipe.plugins.forms.datatypes
org.hkijena.jipipe.plugins.graphannotation
org.hkijena.jipipe.plugins.ij3d
org.hkijena.jipipe.plugins.ij3d.compat
org.hkijena.jipipe.plugins.ij3d.datatypes
org.hkijena.jipipe.plugins.ij3d.nodes
org.hkijena.jipipe.plugins.ij3d.nodes.binary
org.hkijena.jipipe.plugins.ij3d.nodes.features
org.hkijena.jipipe.plugins.ij3d.nodes.filters
org.hkijena.jipipe.plugins.ij3d.nodes.overlay
org.hkijena.jipipe.plugins.ij3d.nodes.roi3d
org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.convert
org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.filter
org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.generate
org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.measure
org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.merge
org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.metadata
org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.modify
org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.process
org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.split
org.hkijena.jipipe.plugins.ij3d.nodes.segmentation
org.hkijena.jipipe.plugins.ij3d.utils
org.hkijena.jipipe.plugins.ijfilaments
org.hkijena.jipipe.plugins.ijfilaments.datatypes
org.hkijena.jipipe.plugins.ijfilaments.environments
org.hkijena.jipipe.plugins.ijfilaments.nodes.convert
org.hkijena.jipipe.plugins.ijfilaments.nodes.filter
org.hkijena.jipipe.plugins.ijfilaments.nodes.generate
org.hkijena.jipipe.plugins.ijfilaments.nodes.measure
org.hkijena.jipipe.plugins.ijfilaments.nodes.merge
org.hkijena.jipipe.plugins.ijfilaments.nodes.modify
org.hkijena.jipipe.plugins.ijfilaments.nodes.overlay
org.hkijena.jipipe.plugins.ijfilaments.nodes.process
org.hkijena.jipipe.plugins.ijfilaments.nodes.split
org.hkijena.jipipe.plugins.ijfilaments.util
org.hkijena.jipipe.plugins.ijmultitemplatematching
org.hkijena.jipipe.plugins.ijocr
org.hkijena.jipipe.plugins.ijocr.environments
org.hkijena.jipipe.plugins.ijocr.nodes
org.hkijena.jipipe.plugins.ijtrackmate
org.hkijena.jipipe.plugins.ijtrackmate.datatypes
org.hkijena.jipipe.plugins.ijtrackmate.display.algorithms
org.hkijena.jipipe.plugins.ijtrackmate.display.trackscheme
org.hkijena.jipipe.plugins.ijtrackmate.nodes.converters
org.hkijena.jipipe.plugins.ijtrackmate.nodes.detectors
org.hkijena.jipipe.plugins.ijtrackmate.nodes.spots
org.hkijena.jipipe.plugins.ijtrackmate.nodes.tracks
org.hkijena.jipipe.plugins.ijtrackmate.utils
org.hkijena.jipipe.plugins.ijweka
org.hkijena.jipipe.plugins.ijweka.datatypes
org.hkijena.jipipe.plugins.ijweka.nodes
org.hkijena.jipipe.plugins.ilastik
org.hkijena.jipipe.plugins.ilastik.datatypes
org.hkijena.jipipe.plugins.ilastik.environments
org.hkijena.jipipe.plugins.ilastik.nodes
org.hkijena.jipipe.plugins.ilastik.utils.hdf5
org.hkijena.jipipe.plugins.imagej2
org.hkijena.jipipe.plugins.imagej2.algorithms
org.hkijena.jipipe.plugins.imagej2.compat
org.hkijena.jipipe.plugins.imagej2.converters
org.hkijena.jipipe.plugins.imagej2.datatypes
org.hkijena.jipipe.plugins.imagej2.datatypes.outofbounds
org.hkijena.jipipe.plugins.imagej2.datatypes.outofbounds.constant
org.hkijena.jipipe.plugins.imagej2.datatypes.shapes
org.hkijena.jipipe.plugins.imagej2.io
org.hkijena.jipipe.plugins.imagej2.io.data.input
org.hkijena.jipipe.plugins.imagej2.io.data.output
org.hkijena.jipipe.plugins.imagej2.io.parameters.input
org.hkijena.jipipe.plugins.imagej2.io.parameters.output
org.hkijena.jipipe.plugins.imagejalgorithms
org.hkijena.jipipe.plugins.imagejalgorithms.nodes
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.analyze
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.background
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.binary
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.blur
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.calibration
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.colocalization
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.color
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.contrast
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.convert
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.convolve
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.datasources
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.detect
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.dimensions
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.edge
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.features
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.fft
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.forms
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.generate
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.io
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.labels
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.labels.filter
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.lut
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.masking
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.math
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.math.distancemap
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.math.local
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.metadata
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.misc
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.montage
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.morphology
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.noise
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.ome
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.opticalflow
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.overlay
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.registration.simple
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.registration.turboreg
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.annotations
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.assemble
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.convert
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.draw
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.filter
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.generate
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.measure
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.merge
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.modify
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.properties
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.register
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.sort
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.split
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.segment
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.sharpen
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.statistics
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.threshold
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.threshold.color
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.threshold.iterative
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.threshold.local
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.transform
org.hkijena.jipipe.plugins.imagejalgorithms.utils
org.hkijena.jipipe.plugins.imagejdatatypes
org.hkijena.jipipe.plugins.imagejdatatypes.algorithms
org.hkijena.jipipe.plugins.imagejdatatypes.algorithms.annotate
org.hkijena.jipipe.plugins.imagejdatatypes.algorithms.color
org.hkijena.jipipe.plugins.imagejdatatypes.algorithms.io
org.hkijena.jipipe.plugins.imagejdatatypes.colorspace
org.hkijena.jipipe.plugins.imagejdatatypes.compat
org.hkijena.jipipe.plugins.imagejdatatypes.converters
org.hkijena.jipipe.plugins.imagejdatatypes.datatypes
org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.color
org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.d2
org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.d2.color
org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.d2.greyscale
org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.d3
org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.d3.color
org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.d3.greyscale
org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.d4
org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.d4.color
org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.d4.greyscale
org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.d5
org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.d5.color
org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.d5.greyscale
org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.fft
org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.greyscale
org.hkijena.jipipe.plugins.imagejdatatypes.util
org.hkijena.jipipe.plugins.imp
org.hkijena.jipipe.plugins.imp.datatypes
org.hkijena.jipipe.plugins.imp.nodes
org.hkijena.jipipe.plugins.imp.utils
org.hkijena.jipipe.plugins.jsonextensionloader
org.hkijena.jipipe.plugins.multiparameters
org.hkijena.jipipe.plugins.multiparameters.converters
org.hkijena.jipipe.plugins.multiparameters.datatypes
org.hkijena.jipipe.plugins.multiparameters.nodes
org.hkijena.jipipe.plugins.napari
org.hkijena.jipipe.plugins.nodetemplate
org.hkijena.jipipe.plugins.omero
org.hkijena.jipipe.plugins.omero.datatypes
org.hkijena.jipipe.plugins.omero.nodes.annotate
org.hkijena.jipipe.plugins.omero.nodes.datasources
org.hkijena.jipipe.plugins.omero.nodes.download
org.hkijena.jipipe.plugins.omero.nodes.manage
org.hkijena.jipipe.plugins.omero.nodes.navigate
org.hkijena.jipipe.plugins.omero.nodes.upload
org.hkijena.jipipe.plugins.omero.util
org.hkijena.jipipe.plugins.omnipose
org.hkijena.jipipe.plugins.omnipose.algorithms
org.hkijena.jipipe.plugins.omnipose.legacy.algorithms
org.hkijena.jipipe.plugins.opencv
org.hkijena.jipipe.plugins.opencv.datatypes
org.hkijena.jipipe.plugins.opencv.nodes
org.hkijena.jipipe.plugins.opencv.nodes.filters
org.hkijena.jipipe.plugins.opencv.nodes.generators
org.hkijena.jipipe.plugins.opencv.utils
org.hkijena.jipipe.plugins.parameters
org.hkijena.jipipe.plugins.pipelinerender
org.hkijena.jipipe.plugins.plots
org.hkijena.jipipe.plugins.plots.converters
org.hkijena.jipipe.plugins.plots.datatypes
org.hkijena.jipipe.plugins.plots.nodes
org.hkijena.jipipe.plugins.processes
org.hkijena.jipipe.plugins.python
org.hkijena.jipipe.plugins.python.adapter
org.hkijena.jipipe.plugins.python.algorithms.jython
org.hkijena.jipipe.plugins.python.algorithms.python
org.hkijena.jipipe.plugins.python.installers
org.hkijena.jipipe.plugins.r
org.hkijena.jipipe.plugins.r.algorithms
org.hkijena.jipipe.plugins.scene3d
org.hkijena.jipipe.plugins.scene3d.datatypes
org.hkijena.jipipe.plugins.scene3d.model
org.hkijena.jipipe.plugins.scene3d.model.geometries
org.hkijena.jipipe.plugins.scene3d.nodes
org.hkijena.jipipe.plugins.settings
org.hkijena.jipipe.plugins.strings
org.hkijena.jipipe.plugins.strings.datasources
org.hkijena.jipipe.plugins.strings.nodes.json
org.hkijena.jipipe.plugins.strings.nodes.text
org.hkijena.jipipe.plugins.strings.nodes.xml
org.hkijena.jipipe.plugins.tables
org.hkijena.jipipe.plugins.tables.compat
org.hkijena.jipipe.plugins.tables.datatypes
org.hkijena.jipipe.plugins.tables.display
org.hkijena.jipipe.plugins.tables.nodes
org.hkijena.jipipe.plugins.tables.nodes.annotations
org.hkijena.jipipe.plugins.tables.nodes.columns
org.hkijena.jipipe.plugins.tables.nodes.filter
org.hkijena.jipipe.plugins.tables.nodes.merge
org.hkijena.jipipe.plugins.tables.nodes.rows
org.hkijena.jipipe.plugins.tables.nodes.split
org.hkijena.jipipe.plugins.tables.nodes.statistics
org.hkijena.jipipe.plugins.tables.nodes.transform
org.hkijena.jipipe.plugins.tools
org.hkijena.jipipe.plugins.utils
org.hkijena.jipipe.plugins.utils.algorithms
org.hkijena.jipipe.plugins.utils.algorithms.datatable
org.hkijena.jipipe.plugins.utils.algorithms.distribute
org.hkijena.jipipe.plugins.utils.algorithms.iterationsteps
org.hkijena.jipipe.plugins.utils.algorithms.meta
org.hkijena.jipipe.plugins.utils.algorithms.processes
org.hkijena.jipipe.plugins.utils.datatypes
org.hkijena.jipipe.utils

Uses of JIPipeProgressInfo in org.hkijena.jipipe

Methods in org.hkijena.jipipe that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	JIPipe.getProgressInfo()

Methods in org.hkijena.jipipe with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
default boolean	JIPipePlugin.canActivate(JIPipeValidationReport report, JIPipeProgressInfo progressInfo) Returns true if the extension can be activated.
void	JIPipe.checkUpdateSites(JIPipeRegistryIssues issues, List<JIPipeDependency> extensions, net.imagej.updater.util.Progress progressAdapter, JIPipeProgressInfo progressInfo) Checks the update sites of all extensions and stores the results in the issues
static <T extends JIPipeData> T	JIPipe.importData(JIPipeReadDataStorage storage, Class<T> klass, JIPipeProgressInfo progressInfo) Imports data of given data type from its output folder.
default void	JIPipeJavaPlugin.postprocess(JIPipeProgressInfo progressInfo) Called after registration.
void	JIPipeJavaPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo) Registers custom modules into JIPipe
void	JIPipe.register(JIPipeJsonPlugin extension, JIPipeProgressInfo progressInfo) Registers a JSON extension

Uses of JIPipeProgressInfo in org.hkijena.jipipe.api

Subclasses of JIPipeProgressInfo in org.hkijena.jipipe.api

Modifier and Type	Class and Description
class	JIPipePercentageProgressInfo A JIPipeProgressInfo that logs the progress of 0 to 100 percent.

Fields in org.hkijena.jipipe.api declared as JIPipeProgressInfo

Modifier and Type	Field and Description
static JIPipeProgressInfo	JIPipeProgressInfo.SILENT
static JIPipeProgressInfo	JIPipeProgressInfo.STDOUT

Methods in org.hkijena.jipipe.api that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	JIPipeProgressInfo.detachProgress() Creates a sub-progress that detaches the references to the global process counters.
JIPipeProgressInfo	JIPipeProgressInfo.StatusUpdatedEvent.getProgressInfo()
JIPipeProgressInfo	AbstractJIPipeRunnable.getProgressInfo()
JIPipeProgressInfo	JIPipeProgressInfoOutputStream.getProgressInfo()
JIPipeProgressInfo	JIPipeProgressInfo.resolve(String logPrepend) Creates a sub-progress that has the same cancellation and progress, but shows the new category in front of sub-messages
JIPipeProgressInfo	JIPipeProgressInfo.resolve(String text, int index, int size) Creates a sub-progress that has the same cancellation and progress, but shows the new category in front of sub-messages.
JIPipeProgressInfo	JIPipeProgressInfo.resolveAndLog(String logPrepend) Applies resolve(logPrepend) and then logs an empty message
JIPipeProgressInfo	JIPipeProgressInfo.resolveAndLog(String text, int index, int size) Creates a sub-progress that has the same cancellation and progress, but shows the new category in front of sub-messages.

Methods in org.hkijena.jipipe.api with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	AbstractJIPipeRunnable.setProgressInfo(JIPipeProgressInfo progressInfo)
void	JIPipeProgressInfoETA.update(int currentIndex, int totalItems, JIPipeProgressInfo progressInfo) Updates the ETA and logs it if needed

Method parameters in org.hkijena.jipipe.api with type arguments of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	JIPipeProgressInfo.resolveAndLogForEach(String text, byte[] collection, BiConsumer<Byte,JIPipeProgressInfo> function) Applies a for-each operation where the progress is logged
<T> void	JIPipeProgressInfo.resolveAndLogForEach(String text, Collection<T> collection, BiConsumer<T,JIPipeProgressInfo> function) Applies a for-each operation where the progress is logged
void	JIPipeProgressInfo.resolveAndLogForEach(String text, double[] collection, BiConsumer<Double,JIPipeProgressInfo> function) Applies a for-each operation where the progress is logged
void	JIPipeProgressInfo.resolveAndLogForEach(String text, float[] collection, BiConsumer<Float,JIPipeProgressInfo> function) Applies a for-each operation where the progress is logged
void	JIPipeProgressInfo.resolveAndLogForEach(String text, int[] collection, BiConsumer<Integer,JIPipeProgressInfo> function) Applies a for-each operation where the progress is logged
void	JIPipeProgressInfo.resolveAndLogForEach(String text, long[] collection, BiConsumer<Long,JIPipeProgressInfo> function) Applies a for-each operation where the progress is logged
void	JIPipeProgressInfo.resolveAndLogForEach(String text, short[] collection, BiConsumer<Short,JIPipeProgressInfo> function) Applies a for-each operation where the progress is logged
<T> void	JIPipeProgressInfo.resolveAndLogForEach(String text, T[] collection, BiConsumer<T,JIPipeProgressInfo> function) Applies a for-each operation where the progress is logged

Constructors in org.hkijena.jipipe.api with parameters of type JIPipeProgressInfo

Constructor and Description
JIPipePercentageProgressInfo(JIPipeProgressInfo other)
JIPipeProgressInfo(JIPipeProgressInfo other)
JIPipeProgressInfoOutputStream(JIPipeProgressInfo progressInfo)
StatusUpdatedEvent(JIPipeProgressInfo progressInfo, int progress, int maxProgress, String message)

Constructor parameters in org.hkijena.jipipe.api with type arguments of type JIPipeProgressInfo

Constructor and Description
InlinedJIPipeRunnable(String taskLabel, Consumer<JIPipeProgressInfo> runnable)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.api.annotation

Methods in org.hkijena.jipipe.api.annotation with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeDataAnnotation	JIPipeDataAnnotation.duplicate(JIPipeProgressInfo progressInfo) Fully duplicates the data
<T extends JIPipeData> T	JIPipeDataAnnotation.getData(Class<T> klass, JIPipeProgressInfo progressInfo)
void	JIPipeDataByMetadataExporter.writeToFolder(JIPipeDataTable dataTable, int row, Path outputPath, JIPipeProgressInfo progressInfo) Writes data to the specified folder
void	JIPipeDataByMetadataExporter.writeToFolder(JIPipeDataTable dataTable, int row, Path outputPath, JIPipeProgressInfo progressInfo, Set<String> existingMetadata) Writes data to the specified folder
void	JIPipeDataByMetadataExporter.writeToFolder(JIPipeDataTable dataTable, Path outputPath, JIPipeProgressInfo progressInfo) Writes data to the specified folder
void	JIPipeDataByMetadataExporter.writeToFolder(JIPipeDataTable dataTable, Path outputPath, JIPipeProgressInfo progressInfo, Set<String> existingMetadata) Writes data to the specified folder
void	JIPipeDataByMetadataExporter.writeToFolder(List<? extends JIPipeDataTable> dataTableList, Path outputPath, JIPipeProgressInfo progressInfo) Writes data to the specified folder

Uses of JIPipeProgressInfo in org.hkijena.jipipe.api.artifacts

Methods in org.hkijena.jipipe.api.artifacts with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	JIPipeArtifactRepositoryApplyInstallUninstallRun.doOperation(JIPipeProgressInfo progressInfo)
protected abstract void	JIPipeArtifactRepositoryOperationRun.doOperation(JIPipeProgressInfo progressInfo)
protected void	JIPipeArtifactRepositoryInstallArtifactRun.doOperation(JIPipeProgressInfo progressInfo)
protected void	JIPipeArtifactRepositoryInstallManuallyRun.doOperation(JIPipeProgressInfo progressInfo)
protected void	JIPipeArtifactRepositoryUninstallArtifactRun.doOperation(JIPipeProgressInfo progressInfo)
void	JIPipeArtifactRepositoryUpdateCachedArtifactsRun.doOperation(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.api.backups

Methods in org.hkijena.jipipe.api.backups with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static void	PruneBackupsRun.pruneEmptySessions(Path backupsDir, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.api.cache

Methods in org.hkijena.jipipe.api.cache with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	JIPipeCache.clearAll(JIPipeProgressInfo progressInfo) Clears the cache
void	JIPipeLocalProjectMemoryCache.clearAll(JIPipeProgressInfo progressInfo)
void	JIPipeCache.clearAll(UUID nodeUUID, boolean invalidateChildren, JIPipeProgressInfo progressInfo) Clears the cache of the specified node
void	JIPipeLocalProjectMemoryCache.clearAll(UUID nodeUUID, boolean invalidateChildren, JIPipeProgressInfo progressInfo)
void	JIPipeCache.clearOutdated(JIPipeProgressInfo progressInfo) Removes all outdated entries
void	JIPipeLocalProjectMemoryCache.clearOutdated(JIPipeProgressInfo progressInfo)
Map<String,JIPipeDataTable>	JIPipeCache.query(JIPipeGraphNode graphNode, UUID nodeUUID, JIPipeProgressInfo progressInfo)
Map<String,JIPipeDataTable>	JIPipeLocalProjectMemoryCache.query(JIPipeGraphNode graphNode, UUID nodeUUID, JIPipeProgressInfo progressInfo)
void	JIPipeLocalProjectMemoryCache.softClear(UUID uuid, JIPipeProgressInfo progressInfo) Removes the cached data of a node without modifying the internal structure Remove outdated will be able to remove these
void	JIPipeCache.store(JIPipeGraphNode graphNode, UUID nodeUUID, JIPipeDataTable data, String outputName, JIPipeProgressInfo progressInfo)
void	JIPipeLocalProjectMemoryCache.store(JIPipeGraphNode graphNode, UUID nodeUUID, JIPipeDataTable data, String outputName, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.api.compartments

Methods in org.hkijena.jipipe.api.compartments with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	JIPipeCompartmentsPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.api.compartments.algorithms

Methods in org.hkijena.jipipe.api.compartments.algorithms with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	IOInterfaceAlgorithm.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
void	JIPipeProjectCompartment.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	IOInterfaceAlgorithm.runPassThrough(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.api.compartments.datatypes

Methods in org.hkijena.jipipe.api.compartments.datatypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	JIPipeCompartmentOutputData.duplicate(JIPipeProgressInfo progressInfo)
void	JIPipeCompartmentOutputData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static JIPipeCompartmentOutputData	JIPipeCompartmentOutputData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.api.compat

Methods in org.hkijena.jipipe.api.compat with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
List<Object>	ImageJDataExportOperation.apply(JIPipeDataTable dataTable, JIPipeProgressInfo progressInfo)
JIPipeDataTable	ImageJDataImportOperation.apply(List<Object> objects, JIPipeProgressInfo progressInfo)
default List<Object>	ImageJDataExporter.exportData(JIPipeData data, ImageJExportParameters parameters, JIPipeProgressInfo progressInfo) Converts a JIPipe data type to its corresponding ImageJ data type
List<Object>	EmptyImageJDataExporter.exportData(JIPipeDataTable dataTable, ImageJExportParameters parameters, JIPipeProgressInfo progressInfo)
List<Object>	ImageJDataExporter.exportData(JIPipeDataTable dataTable, ImageJExportParameters parameters, JIPipeProgressInfo progressInfo) Converts a JIPipe data type to its corresponding ImageJ data type
List<Object>	DataTableImageJDataExporter.exportData(JIPipeDataTable dataTable, ImageJExportParameters properties, JIPipeProgressInfo progressInfo)
void	SingleImageJAlgorithmRunConfiguration.exportOutputToImageJ(JIPipeGraphNode algorithm, JIPipeProgressInfo progressInfo) Extracts algorithm output into ImageJ.
JIPipeDataTable	ImageJDataImporter.importData(List<Object> objects, ImageJImportParameters parameters, JIPipeProgressInfo progressInfo) Imports JIPipe data from ImageJ
JIPipeDataTable	EmptyImageJDataImporter.importData(List<Object> objects, ImageJImportParameters parameters, JIPipeProgressInfo progressInfo)
JIPipeDataTable	DataTableImageJDataImporter.importData(List<Object> objects, ImageJImportParameters parameters, JIPipeProgressInfo progressInfo)
default JIPipeData	ImageJDataImporter.importData(Object object, ImageJImportParameters parameters, JIPipeProgressInfo progressInfo) Imports JIPipe data from ImageJ.
void	SingleImageJAlgorithmRunConfiguration.importInputsFromImageJ(JIPipeGraphNode algorithm, JIPipeProgressInfo progressInfo) Pushes selected ImageJ data into the algorithm input slots

Uses of JIPipeProgressInfo in org.hkijena.jipipe.api.data

Methods in org.hkijena.jipipe.api.data with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	JIPipeDataTable.addData(JIPipeDataItemStore virtualData, List<JIPipeTextAnnotation> annotations, JIPipeTextAnnotationMergeMode mergeStrategy, JIPipeDataContext context, JIPipeProgressInfo progressInfo) Adds data as virtual data reference
void	JIPipeDataTable.addData(JIPipeDataItemStore virtualData, List<JIPipeTextAnnotation> annotations, JIPipeTextAnnotationMergeMode mergeStrategy, JIPipeProgressInfo progressInfo) Deprecated. use the overload with the context
void	JIPipeDataTable.addData(JIPipeDataItemStore virtualData, List<JIPipeTextAnnotation> annotations, JIPipeTextAnnotationMergeMode mergeStrategy, List<JIPipeDataAnnotation> dataAnnotations, JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy, JIPipeDataContext context, JIPipeProgressInfo progressInfo) Adds data as virtual data reference
void	JIPipeDataTable.addData(JIPipeDataItemStore virtualData, List<JIPipeTextAnnotation> annotations, JIPipeTextAnnotationMergeMode mergeStrategy, List<JIPipeDataAnnotation> dataAnnotations, JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy, JIPipeProgressInfo progressInfo) Deprecated. use the overload with the context
void	JIPipeDataTable.addData(JIPipeData value, JIPipeDataContext context, JIPipeProgressInfo progressInfo) Adds a data row
void	JIPipeDataTable.addData(JIPipeData value, JIPipeProgressInfo progressInfo) Deprecated. use the overload with the context
void	JIPipeDataTable.addData(JIPipeData value, List<JIPipeTextAnnotation> annotations, JIPipeTextAnnotationMergeMode mergeStrategy, JIPipeDataContext context, JIPipeProgressInfo progressInfo) Adds a data row
void	JIPipeDataTable.addData(JIPipeData value, List<JIPipeTextAnnotation> annotations, JIPipeTextAnnotationMergeMode mergeStrategy, JIPipeProgressInfo progressInfo) Deprecated. use the overload with the context
void	JIPipeDataTable.addData(JIPipeData data, List<JIPipeTextAnnotation> annotations, JIPipeTextAnnotationMergeMode mergeStrategy, List<JIPipeDataAnnotation> dataAnnotations, JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy, JIPipeDataContext context, JIPipeProgressInfo progressInfo) Adds data as virtual data reference
void	JIPipeDataTable.addData(JIPipeData data, List<JIPipeTextAnnotation> annotations, JIPipeTextAnnotationMergeMode mergeStrategy, List<JIPipeDataAnnotation> dataAnnotations, JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy, JIPipeProgressInfo progressInfo) Deprecated. use the overload with the context
void	JIPipeDataTable.addData(JIPipeDataTable sourceSlot, JIPipeProgressInfo progressInfo) Deprecated. use addDataFromSlot
void	JIPipeDataTable.addDataFromSlot(JIPipeDataTable sourceSlot, JIPipeProgressInfo progressInfo) Copies the source slot into this slot.
void	JIPipeDataTable.addDataFromTable(JIPipeDataTable table, JIPipeProgressInfo progressInfo) Merges the data from the source table into the current one
void	JIPipeDataTable.addFromTable(JIPipeDataTable table, JIPipeProgressInfo progressInfo) Deprecated. use addDataFromTable instead
void	JIPipeDataTable.clear(boolean force, JIPipeProgressInfo progressInfo) Removes all rows from this table
void	JIPipeDataTable.clearData(boolean force, JIPipeProgressInfo progressInfo) Removes all rows from this table
void	JIPipeDataTable.convert(Class<? extends JIPipeData> dataClass, JIPipeProgressInfo progressInfo) Converts this data table in-place and sets the accepted data type
JIPipeData	JIPipeDataConverter.convert(JIPipeData input, JIPipeProgressInfo progressInfo) Converts the supported input type to the output type
default JIPipeThumbnailData	JIPipeData.createThumbnail(int width, int height, JIPipeProgressInfo progressInfo) This function generates a thumbnail for this data Can return null
JIPipeThumbnailData	JIPipeDataTable.createThumbnail(int width, int height, JIPipeProgressInfo progressInfo)
JIPipeData	JIPipeData.duplicate(JIPipeProgressInfo progressInfo) Duplicates the data
JIPipeData	JIPipeEmptyData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	JIPipeDataTable.duplicate(JIPipeProgressInfo progressInfo)
JIPipeDataItemStore	JIPipeDataItemStore.duplicate(JIPipeProgressInfo progressInfo) Fully duplicates the virtual data
void	JIPipeDataTable.exportData(JIPipeWriteDataStorage storage, JIPipeProgressInfo saveProgress) Saves the data contained in this slot into the storage path.
void	JIPipeData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo) Saves the data to a folder
void	JIPipeEmptyData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	JIPipeDataTable.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
protected void	JIPipeDataTable.exportDataRow_(JIPipeWriteDataStorage storage, int row, List<Dimension> previewSizes, JIPipeProgressInfo rowProgress) NOT THREAD-SAFE
default void	JIPipeData.exportThumbnails(JIPipeWriteDataStorage storage, Path target, List<Dimension> sizes, JIPipeProgressInfo progressInfo) Exports the thumbnails/previews of this data into the provided storage
<T extends JIPipeData> List<T>	JIPipeDataTable.getAllData(Class<T> dataClass, JIPipeProgressInfo progressInfo) Gets all the data stored in a specific row.
protected JIPipeData	JIPipeDataItemStore.getData_(JIPipeProgressInfo progressInfo) Gets the currently stored data
<T extends JIPipeData> T	JIPipeDataItemStore.getData(Class<T> klass, JIPipeProgressInfo progressInfo) Gets the currently stored data.
<T extends JIPipeData> T	JIPipeDataTable.getData(int row, Class<T> dataClass, JIPipeProgressInfo progressInfo) Gets the data stored in a specific row.
JIPipeData	JIPipeDataItemStore.getData(JIPipeProgressInfo progressInfo) Gets the currently stored data
static JIPipeEmptyData	JIPipeEmptyData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static JIPipeDataTable	JIPipeDataTable.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo) Imports this data from the path
protected JIPipeWriteDataStorage	JIPipeDataTable.saveDataAnnotationRow_(JIPipeWriteDataStorage storage, JIPipeProgressInfo saveProgress, int row, List<Dimension> previewSizes, JIPipeProgressInfo rowProgress, JIPipeDataAnnotation dataAnnotation, Map<String,String> dataAnnotationColumnNameMapping) NOT THREAD-SAFE
JIPipeData	JIPipeLegacyDataImportOperation.show(JIPipeDataSlot slot, JIPipeDataTableRowInfo row, String dataAnnotationName, Path rowStorageFolder, String compartmentName, String algorithmName, String displayName, JIPipeDesktopWorkbench workbench, JIPipeProgressInfo progressInfo) Imports the data and shows it
JIPipeData	JIPipeDataDisplayWrapperImportOperation.show(JIPipeDataSlot slot, JIPipeDataTableRowInfo row, String dataAnnotationName, Path rowStorageFolder, String compartmentName, String algorithmName, String displayName, JIPipeDesktopWorkbench workbench, JIPipeProgressInfo progressInfo)

Constructors in org.hkijena.jipipe.api.data with parameters of type JIPipeProgressInfo

Constructor and Description
JIPipeDataSlot(JIPipeDataSlot other, boolean shallow, JIPipeProgressInfo progressInfo)
JIPipeDataTable(JIPipeDataTable other, boolean shallow, JIPipeProgressInfo progressInfo)
JIPipeInputDataSlot(JIPipeDataSlot other, boolean shallow, JIPipeProgressInfo progressInfo)
JIPipeOutputDataSlot(JIPipeDataSlot other, boolean shallow, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.api.data.browser

Methods in org.hkijena.jipipe.api.data.browser with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
<T extends JIPipeData> Future<T>	JIPipeLocalDataBrowser.getData(Class<T> klass, JIPipeProgressInfo progressInfo)
<T extends JIPipeData> Future<T>	JIPipeDataBrowser.getData(Class<T> klass, JIPipeProgressInfo progressInfo) Gets the store for the fully downloaded data
Future<String>	JIPipeLocalDataBrowser.getDataAsDetailedString(JIPipeProgressInfo progressInfo)
Future<String>	JIPipeDataBrowser.getDataAsDetailedString(JIPipeProgressInfo progressInfo) Gets the detailed string representation of the data
Future<String>	JIPipeLocalDataBrowser.getDataAsString(JIPipeProgressInfo progressInfo)
Future<String>	JIPipeDataBrowser.getDataAsString(JIPipeProgressInfo progressInfo) Gets the string representation of the data
Future<JIPipeDataTable>	JIPipeDataTableBrowser.getDataTable(JIPipeProgressInfo progressInfo) Gets the whole data table
Future<JIPipeDataTable>	JIPipeLocalDataTableBrowser.getDataTable(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.api.data.storage

Methods in org.hkijena.jipipe.api.data.storage that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	JIPipeZIPWriteDataStorage.getProgressInfo()
JIPipeProgressInfo	JIPipeFileSystemWriteDataStorage.getProgressInfo()
JIPipeProgressInfo	JIPipeZIPReadDataStorage.getProgressInfo()
JIPipeProgressInfo	JIPipeFileSystemReadDataStorage.getProgressInfo()
JIPipeProgressInfo	JIPipeDataStorage.getProgressInfo() Returns the JIPipeProgressInfo instance where information is logged

Constructors in org.hkijena.jipipe.api.data.storage with parameters of type JIPipeProgressInfo

Constructor and Description
JIPipeFileSystemReadDataStorage(JIPipeProgressInfo progressInfo, Path fileSystemPath)
JIPipeFileSystemReadDataStorage(JIPipeProgressInfo progressInfo, Path fileSystemPath, Path internalPath)
JIPipeFileSystemWriteDataStorage(JIPipeProgressInfo progressInfo, Path fileSystemPath)
JIPipeFileSystemWriteDataStorage(JIPipeProgressInfo progressInfo, Path fileSystemPath, Path internalPath)
JIPipeZIPReadDataStorage(JIPipeProgressInfo progressInfo, Path zipFilePath)
JIPipeZIPWriteDataStorage(JIPipeProgressInfo progressInfo, Path zipFilePath)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.api.data.thumbnails

Methods in org.hkijena.jipipe.api.data.thumbnails with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
default JIPipeThumbnailData	JIPipeThumbnailData.createThumbnail(int width, int height, JIPipeProgressInfo progressInfo)
JIPipeData	JIPipeIconLabelThumbnailData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	JIPipeGridThumbnailData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	JIPipeTextThumbnailData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	JIPipeImageThumbnailData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	JIPipeEmptyThumbnailData.duplicate(JIPipeProgressInfo progressInfo)
void	JIPipeGridThumbnailData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	JIPipeTextThumbnailData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	JIPipeImageThumbnailData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	JIPipeEmptyThumbnailData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static JIPipeIconLabelThumbnailData	JIPipeIconLabelThumbnailData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static JIPipeGridThumbnailData	JIPipeGridThumbnailData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static JIPipeTextThumbnailData	JIPipeTextThumbnailData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static JIPipeImageThumbnailData	JIPipeImageThumbnailData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static JIPipeEmptyThumbnailData	JIPipeEmptyThumbnailData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.api.data.utils

Methods in org.hkijena.jipipe.api.data.utils with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeThumbnailData	JIPipeWeakDataReferenceData.createThumbnail(int width, int height, JIPipeProgressInfo progressInfo)
JIPipeData	JIPipeSerializedParameterCollectionData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	JIPipeSerializedJsonObjectData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	JIPipeWeakDataReferenceData.duplicate(JIPipeProgressInfo progressInfo)
void	JIPipeSerializedParameterCollectionData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	JIPipeSerializedJsonObjectData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	JIPipeWeakDataReferenceData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static JIPipeData	JIPipeSerializedParameterCollectionData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static JIPipeWeakDataReferenceData	JIPipeWeakDataReferenceData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.api.environments

Methods in org.hkijena.jipipe.api.environments with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
abstract void	JIPipeArtifactEnvironment.applyConfigurationFromArtifact(JIPipeLocalArtifact artifact, JIPipeProgressInfo progressInfo) Applies the artifact configuration to the current environment if isLoadFromArtifact() is true
void	JIPipeArtifactEnvironment.applyConfigurationFromArtifactAndSetLastArtifact(JIPipeLocalArtifact artifact, JIPipeProgressInfo progressInfo) Applies the artifact configuration to the current environment if isLoadFromArtifact() is true Also sets the last loaded artifact
void	JIPipeProcessArtifactEnvironment.runExecutable(List<String> args, Map<String,String> additionalEnvironmentVariables, boolean detached, JIPipeProgressInfo progressInfo) Runs the environment as process

Uses of JIPipeProgressInfo in org.hkijena.jipipe.api.grouping

Methods in org.hkijena.jipipe.api.grouping with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeDataBatchGenerationResult	JIPipeGraphWrapperAlgorithm.generateDataBatchesGenerationResult(List<JIPipeInputDataSlot> slots, JIPipeProgressInfo progressInfo)
void	GroupingPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)
void	JIPipeGraphWrapperAlgorithm.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.api.looping

Methods in org.hkijena.jipipe.api.looping with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeDataBatchGenerationResult	LoopStartNode.generateDataBatchesGenerationResult(List<JIPipeInputDataSlot> slots, JIPipeProgressInfo progressInfo) Deprecated.
void	LoopingPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.api.nodes

Methods in org.hkijena.jipipe.api.nodes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	JIPipeGraphNode.archiveTo(JIPipeWriteDataStorage projectStorage, JIPipeWriteDataStorage wrappedExternalStorage, JIPipeProgressInfo progressInfo, Path originalBaseDirectory) Called when the node is being archived into the specified storage.
void	JIPipeGraphNode.clearSlotData(boolean force, JIPipeProgressInfo progressInfo) Clears all data slots
abstract void	JIPipeGraphNode.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Runs the workload
void	JIPipeAlgorithm.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	JIPipeAlgorithm.runPassThrough(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Runs the pass through.

Uses of JIPipeProgressInfo in org.hkijena.jipipe.api.nodes.algorithm

Methods in org.hkijena.jipipe.api.nodes.algorithm with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeDataBatchGenerationResult	JIPipeIteratingMissingDataGeneratorAlgorithm.generateDataBatchesGenerationResult(List<JIPipeInputDataSlot> slots, JIPipeProgressInfo progressInfo)
JIPipeDataBatchGenerationResult	JIPipeSingleIterationAlgorithm.generateDataBatchesGenerationResult(List<JIPipeInputDataSlot> slots, JIPipeProgressInfo progressInfo)
JIPipeDataBatchGenerationResult	JIPipeMergingAlgorithm.generateDataBatchesGenerationResult(List<JIPipeInputDataSlot> slots, JIPipeProgressInfo progressInfo)
JIPipeDataBatchGenerationResult	JIPipeMissingDataGeneratorAlgorithm.generateDataBatchesGenerationResult(List<JIPipeInputDataSlot> slots, JIPipeProgressInfo progressInfo)
JIPipeDataBatchGenerationResult	JIPipeSimpleIteratingAlgorithm.generateDataBatchesGenerationResult(List<JIPipeInputDataSlot> slots, JIPipeProgressInfo progressInfo)
JIPipeDataBatchGenerationResult	JIPipeParameterlessSimpleIteratingAlgorithm.generateDataBatchesGenerationResult(List<JIPipeInputDataSlot> slots, JIPipeProgressInfo progressInfo)
JIPipeDataBatchGenerationResult	JIPipeIteratingAlgorithm.generateDataBatchesGenerationResult(List<JIPipeInputDataSlot> slots, JIPipeProgressInfo progressInfo)
void	JIPipeParameterlessSimpleIteratingAlgorithm.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
void	JIPipeParameterSlotAlgorithm.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected abstract void	JIPipeIteratingMissingDataGeneratorAlgorithm.runGenerator(JIPipeMultiIterationStep iterationStep, JIPipeInputDataSlot inputSlot, JIPipeOutputDataSlot outputSlot, JIPipeProgressInfo progressInfo) Generates data and puts the output into the specified output slot
protected abstract void	JIPipeMissingDataGeneratorAlgorithm.runGenerator(JIPipeMultiIterationStep iterationStep, JIPipeInputDataSlot inputSlot, JIPipeOutputDataSlot outputSlot, JIPipeProgressInfo progressInfo) Generates data and puts the output into the specified output slot
protected void	JIPipeIteratingMissingDataGeneratorAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Runs code on one data row
protected abstract void	JIPipeSingleIterationAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Runs code on one data row
protected abstract void	JIPipeMergingAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Runs code on one data row
protected void	JIPipeMissingDataGeneratorAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeProgressInfo progressInfo) Runs code on one data row
protected abstract void	JIPipeSimpleIteratingAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Runs code on one data row
protected abstract void	JIPipeIteratingAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Runs code on one data row
protected abstract void	JIPipeParameterlessSimpleIteratingAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeProgressInfo progressInfo) Runs code on one data row
void	JIPipeIteratingMissingDataGeneratorAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	JIPipeSingleIterationAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	JIPipeMergingAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	JIPipeMissingDataGeneratorAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	JIPipeSimpleIteratingAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	JIPipeIteratingAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
abstract void	JIPipeParameterSlotAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations) Runs a parameter set iteration
protected void	JIPipeSingleIterationAlgorithm.runPassThrough(JIPipeProgressInfo progressInfo, JIPipeMultiIterationStep iterationStep) A pass-through variant for merging algorithms.
protected void	JIPipeMergingAlgorithm.runPassThrough(JIPipeProgressInfo progressInfo, JIPipeMultiIterationStep iterationStep) A pass-through variant for merging algorithms.
protected void	JIPipeSimpleIteratingAlgorithm.runPassThrough(JIPipeProgressInfo progressInfo, JIPipeSingleIterationStep iterationStep) A pass-through variant for iterating algorithms.
protected void	JIPipeIteratingAlgorithm.runPassThrough(JIPipeProgressInfo progressInfo, JIPipeSingleIterationStep iterationStep) A pass-through variant for iterating algorithms.

Uses of JIPipeProgressInfo in org.hkijena.jipipe.api.nodes.annotation

Methods in org.hkijena.jipipe.api.nodes.annotation with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	JIPipeAnnotationGraphNode.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.api.nodes.iterationstep

Methods in org.hkijena.jipipe.api.nodes.iterationstep with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	JIPipeMultiIterationStep.addOutputData(JIPipeOutputDataSlot slot, JIPipeDataItemStore data, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
void	JIPipeMultiIterationStep.addOutputData(JIPipeOutputDataSlot slot, JIPipeDataItemStore data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode mergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
void	JIPipeMultiIterationStep.addOutputData(JIPipeOutputDataSlot slot, JIPipeDataItemStore data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode annotationMergeStrategy, List<JIPipeDataAnnotation> additionalDataAnnotations, JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy, JIPipeProgressInfo progressInfo)
void	JIPipeSingleIterationStep.addOutputData(JIPipeOutputDataSlot slot, JIPipeDataItemStore virtualData, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode mergeStrategy, List<JIPipeDataAnnotation> additionalDataAnnotations, JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
void	JIPipeMultiIterationStep.addOutputData(JIPipeOutputDataSlot slot, JIPipeData data, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
void	JIPipeSingleIterationStep.addOutputData(JIPipeOutputDataSlot slot, JIPipeData data, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
void	JIPipeMultiIterationStep.addOutputData(JIPipeOutputDataSlot slot, JIPipeData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode mergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
void	JIPipeSingleIterationStep.addOutputData(JIPipeOutputDataSlot slot, JIPipeData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode mergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
void	JIPipeMultiIterationStep.addOutputData(JIPipeOutputDataSlot slot, JIPipeData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode mergeStrategy, List<JIPipeDataAnnotation> additionalDataAnnotations, JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
void	JIPipeSingleIterationStep.addOutputData(JIPipeOutputDataSlot slot, JIPipeData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode mergeStrategy, List<JIPipeDataAnnotation> additionalDataAnnotations, JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
void	JIPipeMultiIterationStep.addOutputData(String slotName, JIPipeDataItemStore data, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations should be set up till this point
void	JIPipeMultiIterationStep.addOutputData(String slotName, JIPipeDataItemStore data, JIPipeTextAnnotationMergeMode annotationMergeStrategy, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations should be set up till this point
void	JIPipeMultiIterationStep.addOutputData(String slotName, JIPipeDataItemStore data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations should be set up till this point
void	JIPipeMultiIterationStep.addOutputData(String slotName, JIPipeData data, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations should be set up till this point
void	JIPipeSingleIterationStep.addOutputData(String slotName, JIPipeData data, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations should be set up till this point
void	JIPipeMultiIterationStep.addOutputData(String slotName, JIPipeData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations should be set up till this point
void	JIPipeMultiIterationStep.addOutputData(String slotName, JIPipeData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode annotationMergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations should be set up till this point
void	JIPipeSingleIterationStep.addOutputData(String slotName, JIPipeData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode mergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations should be set up till this point
void	JIPipeMultiIterationStep.addOutputData(String slotName, JIPipeData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode mergeStrategy, List<JIPipeDataAnnotation> additionalDataAnnotations, JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations should be set up till this point
void	JIPipeSingleIterationStep.addOutputData(String slotName, JIPipeData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode mergeStrategy, List<JIPipeDataAnnotation> additionalDataAnnotations, JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations should be set up till this point
List<JIPipeMultiIterationStep>	JIPipeMultiIterationStepGenerator.build(JIPipeProgressInfo progressInfo)
default List<JIPipeMultiIterationStep>	JIPipeIterationStepAlgorithm.generateDataBatchesDryRun(List<JIPipeInputDataSlot> slots, JIPipeProgressInfo progressInfo) Deprecated. use generateDataBatchesGenerationResult
JIPipeDataBatchGenerationResult	JIPipeIterationStepAlgorithm.generateDataBatchesGenerationResult(List<JIPipeInputDataSlot> slots, JIPipeProgressInfo progressInfo) Generates iteration steps.
<T extends JIPipeData> List<T>	JIPipeMultiIterationStep.getInputData(JIPipeDataSlot slot, Class<T> dataClass, JIPipeProgressInfo progressInfo) Gets stored data from an input slot
<T extends JIPipeData> T	JIPipeSingleIterationStep.getInputData(JIPipeDataSlot slot, Class<T> dataClass, JIPipeProgressInfo progressInfo) Gets stored data from an input slot
<T extends JIPipeData> T	JIPipeMultiIterationStep.getInputData(JIPipeDataSlot slot, int row, Class<T> dataClass, JIPipeProgressInfo progressInfo) Gets stored data from an input slot
<T extends JIPipeData> List<T>	JIPipeMultiIterationStep.getInputData(String slotName, Class<T> dataClass, JIPipeProgressInfo progressInfo) Gets stored data from an input slot
<T extends JIPipeData> T	JIPipeSingleIterationStep.getInputData(String slotName, Class<T> dataClass, JIPipeProgressInfo progressInfo) Gets stored data from an input slot
<T extends JIPipeData> T	JIPipeMultiIterationStep.getInputData(String slotName, int row, Class<T> dataClass, JIPipeProgressInfo progressInfo) Gets stored data from an input slot
JIPipeDataSlot	JIPipeMultiIterationStep.toDummySlot(JIPipeDataSlotInfo info, JIPipeGraphNode node, JIPipeDataSlot sourceSlot, JIPipeProgressInfo progressInfo) Creates a new dummy slot that contains the data of one input slot and the annotations of this batch
JIPipeDataSlot	JIPipeSingleIterationStep.toDummySlot(JIPipeDataSlotInfo info, JIPipeGraphNode node, JIPipeDataSlot sourceSlot, JIPipeProgressInfo progressInfo) Creates a new dummy slot that contains the data of one input slot and the annotations of this batch

Uses of JIPipeProgressInfo in org.hkijena.jipipe.api.registries

Methods in org.hkijena.jipipe.api.registries with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
<T extends JIPipeData> T	JIPipeDatatypeRegistry.convert(JIPipeData inputData, Class<T> outputDataType, JIPipeProgressInfo progressInfo) Converts the input data to the output data type
List<JIPipeLocalArtifact>	JIPipeArtifactsRegistry.queryLocalRepositories(String groupId, String artifactId, String version, JIPipeProgressInfo progressInfo)
List<JIPipeRemoteArtifact>	JIPipeArtifactsRegistry.queryRemoteRepositories(String groupId, String artifactId, String version, JIPipeProgressInfo progressInfo)
void	JIPipeNodeTemplateRegistry.reloadGlobalTemplates(JIPipeProgressInfo progressInfo)
void	JIPipeArtifactsRegistry.updateCachedArtifacts(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.api.run

Methods in org.hkijena.jipipe.api.run that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	JIPipeRunnable.getProgressInfo() The info object that allows communication with the run

Methods in org.hkijena.jipipe.api.run with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	JIPipeGraphRun.cleanGraph(JIPipeGraph graph, JIPipeProgressInfo progressInfo)
void	JIPipeGraphRunGCGraph.gc(JIPipeProgressInfo progressInfo)
void	JIPipeGraphRunGCGraph.removeInputToNodeEdge(JIPipeAlgorithm algorithm, JIPipeProgressInfo progressInfo)
void	JIPipeGraphRunGCGraph.removeNodeToOutputEdge(JIPipeOutputDataSlot outputDataSlot, JIPipeProgressInfo progressInfo)
void	JIPipeGraphRunGCGraph.removeOutputToInputEdge(JIPipeDataSlot outputSlot, JIPipeInputDataSlot inputSlot, JIPipeProgressInfo progressInfo) Removes a connection from the targeted output slot to the input, which will free up the output slot at some point
void	JIPipeRunnable.setProgressInfo(JIPipeProgressInfo progressInfo) Sets the progress info of this runnable

Uses of JIPipeProgressInfo in org.hkijena.jipipe.desktop.api.environments

Methods in org.hkijena.jipipe.desktop.api.environments that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	JIPipeDesktopEasyInstallExternalEnvironmentInstaller.getProgressInfo()

Methods in org.hkijena.jipipe.desktop.api.environments with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static List<JIPipeDesktopEasyInstallExternalEnvironmentInstallerPackage>	JIPipeDesktopEasyInstallExternalEnvironmentInstallerPackage.loadFromJson(com.fasterxml.jackson.databind.JsonNode rootNode, JIPipeProgressInfo repositoryProgress)
static List<JIPipeDesktopEasyInstallExternalEnvironmentInstallerPackage>	JIPipeDesktopEasyInstallExternalEnvironmentInstallerPackage.loadFromURLs(List<String> repositories, JIPipeProgressInfo progressInfo)
void	JIPipeDesktopEasyInstallExternalEnvironmentInstaller.setProgressInfo(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.desktop.app.cache

Methods in org.hkijena.jipipe.desktop.app.cache with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected abstract void	JIPipeDesktopLegacyCacheDataViewerWindow.loadData(JIPipeDataItemStore virtualData, JIPipeProgressInfo progressInfo) Instruction to load the data from the current data source

Uses of JIPipeProgressInfo in org.hkijena.jipipe.desktop.app.cache.exporters

Methods in org.hkijena.jipipe.desktop.app.cache.exporters that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	JIPipeDesktopDataTableToOutputExporterRun.getProgressInfo()
JIPipeProgressInfo	JIPipeDesktopDataTableToFilesByMetadataExporterRun.getProgressInfo()
JIPipeProgressInfo	JIPipeDesktopDataTableToZIPExporterRun.getProgressInfo()

Methods in org.hkijena.jipipe.desktop.app.cache.exporters with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	JIPipeDesktopDataTableToOutputExporterRun.setProgressInfo(JIPipeProgressInfo progressInfo)
void	JIPipeDesktopDataTableToFilesByMetadataExporterRun.setProgressInfo(JIPipeProgressInfo progressInfo)
void	JIPipeDesktopDataTableToZIPExporterRun.setProgressInfo(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.desktop.app.resultanalysis

Methods in org.hkijena.jipipe.desktop.app.resultanalysis that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	JIPipeResultCopyFilesByMetadataExporterRun.getProgressInfo()

Methods in org.hkijena.jipipe.desktop.app.resultanalysis with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	JIPipeResultCopyFilesByMetadataExporterRun.setProgressInfo(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.annotation

Methods in org.hkijena.jipipe.plugins.annotation with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	AnnotationsPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.annotation.algorithms

Methods in org.hkijena.jipipe.plugins.annotation.algorithms with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	ImplicitResultsTableDataConverter.convert(JIPipeData input, JIPipeProgressInfo progressInfo)
void	SplitByAnnotation.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
void	ModifyAnnotationScript.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
void	FilterByAnnotation.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
void	MergeDataSlots.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
void	SplitByAnnotationScript.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ConvertToAnnotationTable.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RenameDataAnnotation.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExtractAndReplaceAnnotation.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExtractDataAnnotation.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	FilterByAnnotationIfElse.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	AnnotateByExpression.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	AnnotateWithData.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	DataAnnotationToStringAnnotation.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	GenerateUniqueAnnotation.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RemoveAnnotationAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	AnnotateByProjectPaths.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ModifyAnnotationScript.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RemoveDataAnnotations.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RenameAnnotation.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	AnnotateWithSourceSlot.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	AnnotateWithDataString.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	OverwriteAnnotations.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SplitByAnnotationScript.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MergeAnnotations.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SetSingleAnnotation.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SimplifyAnnotationsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
void	RemoveArrayAnnotationsAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	GenerateRandomUniqueAnnotation.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	RemoveNAAnnotationColumnsAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	AnnotateWithAnnotationTable.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
protected void	MergeAnnotations.runPassThrough(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	AnnotateWithAnnotationTable.runPassThrough(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.annotation.datasources

Methods in org.hkijena.jipipe.plugins.annotation.datasources with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	AnnotationTableFromFile.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.artifacts

Methods in org.hkijena.jipipe.plugins.artifacts with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	ArtifactsPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.batchassistant

Methods in org.hkijena.jipipe.plugins.batchassistant with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeThumbnailData	DataBatchStatusData.createThumbnail(int width, int height, JIPipeProgressInfo progressInfo)
JIPipeData	DataBatchStatusData.duplicate(JIPipeProgressInfo progressInfo)
static DataBatchStatusData	DataBatchStatusData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
void	BatchAssistantPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.cellpose

Methods in org.hkijena.jipipe.plugins.cellpose with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	CellposePlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.cellpose.algorithms

Methods in org.hkijena.jipipe.plugins.cellpose.algorithms with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ImportCellposeSizeModelFromFileAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ImportCellposeModelFromFileAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.cellpose.algorithms.cp2

Methods in org.hkijena.jipipe.plugins.cellpose.algorithms.cp2 with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	Cellpose2SegmentationInferenceAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	Cellpose2TrainingAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ImportPretrainedCellpose2ModelAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.cellpose.algorithms.cp3

Methods in org.hkijena.jipipe.plugins.cellpose.algorithms.cp3 with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	Cellpose3DenoiseInferenceAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	Cellpose3SegmentationInferenceAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	Cellpose3SegmentationTrainingAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	Cellpose3DenoiseTrainingAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ImportPretrainedCellpose3DenoiseModelAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ImportPretrainedCellpose3SegmentationModelAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.cellpose.datatypes

Methods in org.hkijena.jipipe.plugins.cellpose.datatypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	CellposeSizeModelData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	CellposeModelData.duplicate(JIPipeProgressInfo progressInfo)
void	CellposeSizeModelData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	CellposeModelData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static CellposeSizeModelData	CellposeSizeModelData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static CellposeModelData	CellposeModelData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.cellpose.legacy.algorithms

Methods in org.hkijena.jipipe.plugins.cellpose.legacy.algorithms with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static void	Cellpose1InferenceAlgorithm.extractCellposeOutputs(JIPipeMultiIterationStep iterationStep, JIPipeProgressInfo progressInfo, Path outputRoiOutline, Path outputLabels, Path outputFlows, Path outputProbabilities, Path outputStyles, List<JIPipeTextAnnotation> annotationList, CellposeSegmentationOutputSettings_Old outputParameters) Deprecated.
protected void	Cellpose1TrainingAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.
protected void	LegacyCellpose2InferenceAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.
protected void	LegacyCellpose2TrainingAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.
protected void	Cellpose1InferenceAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.
protected void	ImportLegacyCellposeSizeModelAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.
protected void	ImportLegacyCellposeModelAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.cellpose.legacy.compat

Methods in org.hkijena.jipipe.plugins.cellpose.legacy.compat with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
List<Object>	LegacyCellposeSizeModelImageJExporter.exportData(JIPipeDataTable dataTable, ImageJExportParameters parameters, JIPipeProgressInfo progressInfo)
List<Object>	LegacyCellposeModelImageJExporter.exportData(JIPipeDataTable dataTable, ImageJExportParameters parameters, JIPipeProgressInfo progressInfo)
JIPipeDataTable	LegacyCellposeSizeModelImageJImporter.importData(List<Object> objects, ImageJImportParameters parameters, JIPipeProgressInfo progressInfo)
JIPipeDataTable	LegacyCellposeModelImageJImporter.importData(List<Object> objects, ImageJImportParameters parameters, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.cellpose.legacy.datatypes

Methods in org.hkijena.jipipe.plugins.cellpose.legacy.datatypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	LegacyCellposeModelData.duplicate(JIPipeProgressInfo progressInfo) Deprecated.
JIPipeData	LegacyCellposeSizeModelData.duplicate(JIPipeProgressInfo progressInfo) Deprecated.
void	LegacyCellposeModelData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo) Deprecated.
void	LegacyCellposeSizeModelData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo) Deprecated.
static LegacyCellposeModelData	LegacyCellposeModelData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo) Deprecated.
static LegacyCellposeSizeModelData	LegacyCellposeSizeModelData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo) Deprecated.

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.cellpose.utils

Methods in org.hkijena.jipipe.plugins.cellpose.utils with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static CellposeModelInfo	CellposeUtils.createModelInfo(List<JIPipeTextAnnotation> textAnnotations, CellposeModelData modelData, Path workDirectory, JIPipeProgressInfo modelProgress)
static ij.ImagePlus	CellposeUtils.extractImageFromInfo(CellposeImageInfo imageInfo, Path ioPath, String basePathSuffix, boolean useBioFormats, JIPipeProgressInfo progressInfo)
static void	CellposeUtils.runCellpose(PythonEnvironment environment, List<String> arguments, boolean suppressLogs, JIPipeProgressInfo progressInfo)
static void	CellposeUtils.saveInputImages(JIPipeInputDataSlot inputSlot, Set<Integer> inputRows, boolean enable3D, boolean enableMultiChannel, Path io2DPath, Path io3DPath, List<CellposeImageInfo> runWith2D, List<CellposeImageInfo> runWith3D, JIPipeGraphNode executingNode, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.clij2

Methods in org.hkijena.jipipe.plugins.clij2 with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	CLIJPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)
void	CLIJCommandNode.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	CLIJCommandNode.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Constructors in org.hkijena.jipipe.plugins.clij2 with parameters of type JIPipeProgressInfo

Constructor and Description
CLIJCommandNodeInfo(org.scijava.Context context, org.scijava.plugin.PluginInfo<net.haesleinhuepf.clij.macro.CLIJMacroPlugin> pluginInfo, JIPipeProgressInfo moduleProgress)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.clij2.algorithms

Methods in org.hkijena.jipipe.plugins.clij2.algorithms with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	Clij2ExecuteKernelIterating.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	Clij2ExecuteKernelSimpleIterating.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	Clij2PushAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	Clij2PullAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
void	Clij2ExecuteKernelIterating.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	Clij2ExecuteKernelSimpleIterating.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.clij2.compat

Methods in org.hkijena.jipipe.plugins.clij2.compat with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
List<Object>	CLIIJ2DataToImageWindowImageJExporter.exportData(JIPipeDataTable dataTable, ImageJExportParameters parameters, JIPipeProgressInfo progressInfo)
JIPipeDataTable	CLIJ2DataFromImageWindowImageJImporter.importData(List<Object> objects, ImageJImportParameters parameters, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.clij2.datatypes

Methods in org.hkijena.jipipe.plugins.clij2.datatypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	ImagePlusDataToCLIJImageDataConverter.convert(JIPipeData input, JIPipeProgressInfo progressInfo)
JIPipeData	CLIJImageToImagePlusDataConverter.convert(JIPipeData input, JIPipeProgressInfo progressInfo)
JIPipeThumbnailData	CLIJImageData.createThumbnail(int width, int height, JIPipeProgressInfo progressInfo)
JIPipeData	CLIJImageData.duplicate(JIPipeProgressInfo progressInfo)
void	CLIJImageData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static CLIJImageData	CLIJImageData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.core

Methods in org.hkijena.jipipe.plugins.core with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	CorePlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.core.data

Methods in org.hkijena.jipipe.plugins.core.data with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	CopyContainingFolderDataImportOperation.show(JIPipeDataSlot slot, JIPipeDataTableRowInfo row, String dataAnnotationName, Path rowStorageFolder, String compartmentName, String algorithmName, String displayName, JIPipeDesktopWorkbench workbench, JIPipeProgressInfo progressInfo)
JIPipeData	OpenContainingFolderDataImportOperation.show(JIPipeDataSlot slot, JIPipeDataTableRowInfo row, String dataAnnotationName, Path rowStorageFolder, String compartmentName, String algorithmName, String displayName, JIPipeDesktopWorkbench workbench, JIPipeProgressInfo progressInfo)
JIPipeData	OpenInNativeApplicationDataImportOperation.show(JIPipeDataSlot slot, JIPipeDataTableRowInfo row, String dataAnnotationName, Path rowStorageFolder, String compartmentName, String algorithmName, String displayName, JIPipeDesktopWorkbench workbench, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.core.nodes

Methods in org.hkijena.jipipe.plugins.core.nodes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	JIPipeCommentNode.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.dataenvironment

Methods in org.hkijena.jipipe.plugins.dataenvironment with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	JIPipeDataDirectoryEnvironment.applyConfigurationFromArtifact(JIPipeLocalArtifact artifact, JIPipeProgressInfo progressInfo)
void	DataDirectoriesPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.dev

Methods in org.hkijena.jipipe.plugins.dev with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	DevelopmentPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.expressions

Methods in org.hkijena.jipipe.plugins.expressions with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	ExpressionPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.filesystem

Methods in org.hkijena.jipipe.plugins.filesystem with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	FilesystemPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.filesystem.algorithms.local

Methods in org.hkijena.jipipe.plugins.filesystem.algorithms.local with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	ImplicitPathTypeConverter.convert(JIPipeData input, JIPipeProgressInfo progressInfo)
void	ExportDataByParameter.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExportDataTable.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExportDataTableByParameter.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	CopyPath.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ConcatenatePaths.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	AnnotationToPath.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExportData.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ImportDataTableDirectory.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RelativizePaths.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ModifyPathWithExpression.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	FilterPaths.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ConvertToExportedPath.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExtractFileName.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ModifyPath.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SimplePathAnnotationGenerator.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	AnnotationTableToPaths.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExportDataByParameter2.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	CreateDirectory.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ConcatenateByParameter.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ListSubfolders.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SimpleFolderAnnotationGenerator.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ListFiles.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SimpleFileAnnotationGenerator.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RenameByString.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExtractParent.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ImportDataRowFolder.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ImportDataTableArchive.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ConvertDataToOutputPath.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	AnnotateWithPathProperties.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RelativizeByParameter.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.filesystem.algorithms.zarr

Methods in org.hkijena.jipipe.plugins.filesystem.algorithms.zarr with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ListZARRURIDatasetsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ListZARRDirectoryZIPDatasetsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.filesystem.compat

Methods in org.hkijena.jipipe.plugins.filesystem.compat with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
List<Object>	PathDataToTableImageJExporter.exportData(JIPipeDataTable dataTable, ImageJExportParameters parameters, JIPipeProgressInfo progressInfo)
JIPipeDataTable	PathDataFromTableImageJImporter.importData(List<Object> objects, ImageJImportParameters parameters, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.filesystem.datasources

Methods in org.hkijena.jipipe.plugins.filesystem.datasources with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	FileListDataSource.archiveTo(JIPipeWriteDataStorage projectStorage, JIPipeWriteDataStorage wrappedExternalStorage, JIPipeProgressInfo progressInfo, Path originalBaseDirectory)
void	PathListDataSource.archiveTo(JIPipeWriteDataStorage projectStorage, JIPipeWriteDataStorage wrappedExternalStorage, JIPipeProgressInfo progressInfo, Path originalBaseDirectory)
void	FolderListDataSource.archiveTo(JIPipeWriteDataStorage projectStorage, JIPipeWriteDataStorage wrappedExternalStorage, JIPipeProgressInfo progressInfo, Path originalBaseDirectory)
void	PathDataSource.archiveTo(JIPipeWriteDataStorage projectStorage, JIPipeWriteDataStorage wrappedExternalStorage, JIPipeProgressInfo progressInfo, Path originalBaseDirectory)
void	FolderDataSource.archiveTo(JIPipeWriteDataStorage projectStorage, JIPipeWriteDataStorage wrappedExternalStorage, JIPipeProgressInfo progressInfo, Path originalBaseDirectory)
void	FileDataSource.archiveTo(JIPipeWriteDataStorage projectStorage, JIPipeWriteDataStorage wrappedExternalStorage, JIPipeProgressInfo progressInfo, Path originalBaseDirectory)
void	OutputFolderDataSource.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
void	FileListDataSource.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
void	PathListDataSource.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
void	FolderListDataSource.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
void	PathDataSource.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
void	FolderDataSource.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
void	FileDataSource.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ProjectUserFolderDataSource.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	PathFromUserDataSource.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	DownloadFilesDataSource.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	URIListDataSource.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
void	TemporaryFolderDataSource.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	TemporaryFileDataSource.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.filesystem.dataypes

Methods in org.hkijena.jipipe.plugins.filesystem.dataypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeThumbnailData	PathData.createThumbnail(int width, int height, JIPipeProgressInfo progressInfo)
JIPipeData	PathData.duplicate(JIPipeProgressInfo progressInfo)
void	PathData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static PathData	PathData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static FolderData	FolderData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static FileData	FileData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.forms

Methods in org.hkijena.jipipe.plugins.forms with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	FormsPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.forms.algorithms

Methods in org.hkijena.jipipe.plugins.forms.algorithms with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeDataBatchGenerationResult	IteratingFormProcessorAlgorithm.generateDataBatchesGenerationResult(List<JIPipeInputDataSlot> slots, JIPipeProgressInfo progressInfo)
JIPipeDataBatchGenerationResult	SimpleIteratingFormProcessorAlgorithm.generateDataBatchesGenerationResult(List<JIPipeInputDataSlot> slots, JIPipeProgressInfo progressInfo)
JIPipeDataBatchGenerationResult	MergingFormProcessorAlgorithm.generateDataBatchesGenerationResult(List<JIPipeInputDataSlot> slots, JIPipeProgressInfo progressInfo)
void	SimpleFormGeneratorAlgorithm.run(JIPipeDataSlot combined, JIPipeProgressInfo progressInfo)
abstract void	FormGeneratorAlgorithm.run(JIPipeDataSlot combined, JIPipeProgressInfo progressInfo) This method should add new FormData elements into the combined slot.
void	FormGeneratorAlgorithm.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
void	IteratingFormProcessorAlgorithm.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
void	SimpleIteratingFormProcessorAlgorithm.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
void	MergingFormProcessorAlgorithm.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.forms.datatypes

Methods in org.hkijena.jipipe.plugins.forms.datatypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	IntegerFormData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	DoubleFormData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	StringFormData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	EnumFormData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	PathFormData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	GroupHeaderFormData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	BooleanFormData.duplicate(JIPipeProgressInfo progressInfo)
void	FormData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static <T extends FormData> T	FormData.importData(JIPipeReadDataStorage storage, Class<T> klass, JIPipeProgressInfo progressInfo) Helper method that simplifies the importData() method definition
static IntegerFormData	IntegerFormData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static DoubleFormData	DoubleFormData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static StringFormData	StringFormData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static EnumFormData	EnumFormData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static PathFormData	PathFormData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static GroupHeaderFormData	GroupHeaderFormData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static BooleanFormData	BooleanFormData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.graphannotation

Methods in org.hkijena.jipipe.plugins.graphannotation with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	GraphAnnotationPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ij3d

Methods in org.hkijena.jipipe.plugins.ij3d with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static ij.ImagePlus	IJ3DUtils.forEach3DIn5DGenerate(ij.ImagePlus sourceImage, org.apache.commons.lang3.function.TriFunction<mcib3d.image3d.ImageHandler,ImageSliceIndex,JIPipeProgressInfo,mcib3d.image3d.ImageHandler> operation, JIPipeProgressInfo progressInfo)
static void	IJ3DUtils.forEach3DIn5DIO(ij.ImagePlus imagePlus, TriConsumer<mcib3d.image3d.ImageHandler,ImageSliceIndex,JIPipeProgressInfo> operation, JIPipeProgressInfo progressInfo)
static void	IJ3DUtils.measureRoi3d(mcib3d.image3d.ImageHandler referenceImage, ROI3DListData roiList, int measurements, boolean physicalUnits, String columnPrefix, ResultsTableData target, JIPipeProgressInfo progressInfo)
static void	IJ3DUtils.measureRoi3dRelation(mcib3d.image3d.ImageHandler referenceImage, ROI3DListData roi1List, ROI3DListData roi2List, int measurements, boolean physicalUnits, boolean requireColocalization, boolean preciseColocalization, boolean ignoreC, boolean ignoreT, String columnPrefix, ResultsTableData target, JIPipeProgressInfo progressInfo)
void	IJ3DPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)
static ROI3DListData	IJ3DUtils.roi2DtoRoi3D(ROI2DListData roi2DList, boolean force2D, boolean fast, Neighborhood3D neighborhood, JIPipeProgressInfo progressInfo) Converts 2D ROI to 3D ROI

Method parameters in org.hkijena.jipipe.plugins.ij3d with type arguments of type JIPipeProgressInfo

Modifier and Type	Method and Description
static ij.ImagePlus	IJ3DUtils.forEach3DIn5DGenerate(ij.ImagePlus sourceImage, org.apache.commons.lang3.function.TriFunction<mcib3d.image3d.ImageHandler,ImageSliceIndex,JIPipeProgressInfo,mcib3d.image3d.ImageHandler> operation, JIPipeProgressInfo progressInfo)
static void	IJ3DUtils.forEach3DIn5DIO(ij.ImagePlus imagePlus, TriConsumer<mcib3d.image3d.ImageHandler,ImageSliceIndex,JIPipeProgressInfo> operation, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ij3d.compat

Methods in org.hkijena.jipipe.plugins.ij3d.compat with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
List<Object>	ROI3DImageJExporter.exportData(JIPipeDataTable dataTable, ImageJExportParameters parameters, JIPipeProgressInfo progressInfo)
JIPipeDataTable	ROI3DImageJImporter.importData(List<Object> objects, ImageJImportParameters parameters, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ij3d.datatypes

Methods in org.hkijena.jipipe.plugins.ij3d.datatypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	ROI3DListData.duplicate(JIPipeProgressInfo progressInfo)
void	ROI3DListData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
List<Path>	ROI3DListData.exportOverlayToNapari(ij.ImagePlus imp, Path outputDirectory, String prefix, JIPipeProgressInfo progressInfo)
static ROI3DListData	ROI3DListData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ROI3DListData	ROI3DListData.importData(Path zipFile, JIPipeProgressInfo progressInfo)
void	ROI3DListData.loadObjectsFromStream(InputStream inputStream, JIPipeProgressInfo progressInfo) Copy of the original loadObjects() method adapted to loading from streams
ResultsTableData	ROI3DListData.measure(mcib3d.image3d.ImageHandler referenceImage, int measurements, boolean physicalUnits, String columnPrefix, JIPipeProgressInfo progressInfo)
void	ROI3DListData.outline(ROI3DOutline outline, boolean ignoreErrors, JIPipeProgressInfo progressInfo)
void	ROI3DListData.saveObjectsToStream(OutputStream stream, JIPipeProgressInfo progressInfo)
Scene3DUnindexedMeshGeometry	ROI3D.toGeometry(Color overrideColor, boolean physicalSizes, boolean forceMeshLengthUnit, Quantity.LengthUnit meshLengthUnit, boolean smooth, JIPipeProgressInfo progressInfo)
ij.ImagePlus	ROI3DListData.toLabels(ij.ImagePlus referenceImage, JIPipeProgressInfo progressInfo)
ij.ImagePlus	ROI3DListData.toMask(ij.ImagePlus referenceImage, JIPipeProgressInfo progressInfo)
ROI2DListData	ROI3DListData.toRoi2D(ImageSliceIndex oneSliceIndex, JIPipeProgressInfo progressInfo)
ROI2DListData	ROI3DListData.toRoi2D(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ij3d.nodes

Methods in org.hkijena.jipipe.plugins.ij3d.nodes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ImportROI3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ij3d.nodes.binary

Methods in org.hkijena.jipipe.plugins.ij3d.nodes.binary with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	Voronoi3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	Watershed3DSplittingAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	DistanceMap3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ErodedVolumeFraction3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ij3d.nodes.features

Methods in org.hkijena.jipipe.plugins.ij3d.nodes.features with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	FindMaxima3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SymmetryFilter3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	EdgeFilter3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ij3d.nodes.filters

Methods in org.hkijena.jipipe.plugins.ij3d.nodes.filters with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	Fast3DFiltersAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ij3d.nodes.overlay

Methods in org.hkijena.jipipe.plugins.ij3d.nodes.overlay with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ExtractOverlay3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SetOverlay3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RemoveOverlay3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RenderOverlay3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d

Methods in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ExportROI3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.
protected void	ExportROI3DAlgorithm2.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
void	ExportROI3DAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations) Deprecated.

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.convert

Methods in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.convert with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	Roi3DToMaskAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	Roi3DToRoi2DConverterAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	Roi3DToRGBAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	Roi3DToLabelsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	Roi3DTo3DMeshAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	Roi2DToRoi3DConverterAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.filter

Methods in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.filter with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	FilterRoi3DListsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	FilterRoi3DByOverlapAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	FilterRoi3DByStatisticsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.generate

Methods in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.generate with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	Roi3DFromLabelsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	FindParticles3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.measure

Methods in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.measure with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ExtractRoi3DStatisticsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExtractRoi3DRelationStatisticsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.merge

Methods in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.merge with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	MergeROI3DAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.metadata

Methods in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.metadata with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	RemoveROI3DMetadataAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SetROI3DMetadataFromTableAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExtractROI3DMetadataAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.modify

Methods in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.modify with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ColorRoi3DByStatisticsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ColorRoi3DByNameAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ChangeRoi3DPropertiesFromExpressionsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ROI3DCalculatorAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ChangeRoi3DPropertiesFromTableAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ChangeRoi3DPropertiesAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.process

Methods in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.process with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	OutlineRoi3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RemoveBorderRoi3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.split

Methods in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.split with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	SplitRoi3DIntoConnectedComponentsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExplodeRoi3DListAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ij3d.nodes.segmentation

Methods in org.hkijena.jipipe.plugins.ij3d.nodes.segmentation with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	SpotSegmentation3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	Watershed3DSegmentationAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	HysteresisSegmentation3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	IterativeThreshold3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	NucleiSegmentation3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ij3d.utils

Methods in org.hkijena.jipipe.plugins.ij3d.utils with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
ij.ImagePlus	Roi3DDrawer.draw(ROI3DListData roi3DListData, ij.ImagePlus referenceImage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ijfilaments

Methods in org.hkijena.jipipe.plugins.ijfilaments with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	FilamentsPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ijfilaments.datatypes

Methods in org.hkijena.jipipe.plugins.ijfilaments.datatypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	FilamentsToRoiDataTypeConverter.convert(JIPipeData input, JIPipeProgressInfo progressInfo)
JIPipeData	FilamentsToRoi3dDataTypeConverter.convert(JIPipeData input, JIPipeProgressInfo progressInfo)
JIPipeThumbnailData	Filaments3DGraphData.createThumbnail(int width, int height, JIPipeProgressInfo progressInfo)
JIPipeData	Filaments3DGraphData.duplicate(JIPipeProgressInfo progressInfo)
void	Filaments3DGraphData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
List<Path>	Filaments3DGraphData.exportOverlayToNapari(ij.ImagePlus imp, Path outputDirectory, String prefix, JIPipeProgressInfo progressInfo)
static Filaments3DGraphData	Filaments3DGraphData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
ij.ImagePlus	Filaments3DGraphData.toLabels(ij.ImagePlus referenceImage, boolean withEdges, boolean withVertices, int forcedLineThickness, int forcedVertexRadius, JIPipeProgressInfo progressInfo)
ij.ImagePlus	Filaments3DGraphData.toLabels2(ij.ImagePlus reference, boolean withEdges, boolean withVertices, int forcedLineThickness, int forcedVertexRadius, boolean ignoreC, boolean ignoreZ, boolean ignoreT, boolean hollowVertices, JIPipeProgressInfo progressInfo)
ij.ImagePlus	Filaments3DGraphData.toMask(ij.ImagePlus referenceImage, boolean withEdges, boolean withVertices, int forcedLineThickness, int forcedVertexRadius, JIPipeProgressInfo progressInfo)
ROI3DListData	Filaments3DGraphData.toRoi3D(boolean withEdges, boolean withVertices, int forcedLineThickness, int forcedVertexRadius, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ijfilaments.environments

Methods in org.hkijena.jipipe.plugins.ijfilaments.environments with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	TSOAXEnvironment.applyConfigurationFromArtifact(JIPipeLocalArtifact artifact, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ijfilaments.nodes.convert

Methods in org.hkijena.jipipe.plugins.ijfilaments.nodes.convert with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ConvertFilamentsToLabels2Algorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ConvertFilamentsToRoi3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ConvertFilamentsTo3DMeshAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ConvertFilamentsToRGBAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ConvertFilamentsToMaskAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ConvertFilamentsToLabelsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ConvertROIToFilamentsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ConvertFilamentsToRoiAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ConvertFilamentCyclesToROIAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ijfilaments.nodes.filter

Methods in org.hkijena.jipipe.plugins.ijfilaments.nodes.filter with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	FilterFilamentVerticesByProperties.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	FilterFilamentEdgesByProperties.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RemoveBorderFilaments.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	FilterFilamentsByProperties.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ijfilaments.nodes.generate

Methods in org.hkijena.jipipe.plugins.ijfilaments.nodes.generate with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	SkeletonToFilaments3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SkeletonToFilaments2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SkeletonToSimplifiedFilamentsFijiAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ImportFilamentsFromJsonAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	TSOAXResultAnalysisAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	TSOAX3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	TSOAX2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ijfilaments.nodes.measure

Methods in org.hkijena.jipipe.plugins.ijfilaments.nodes.measure with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	MeasureEdgesAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MeasureFilamentsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MeasureVerticesAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ijfilaments.nodes.merge

Methods in org.hkijena.jipipe.plugins.ijfilaments.nodes.merge with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	MergeFilamentsAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ijfilaments.nodes.modify

Methods in org.hkijena.jipipe.plugins.ijfilaments.nodes.modify with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	RemoveVertexValueBackupsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	FilamentCyclesToComponentsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ChangeFilamentVertexPropertiesExpressionAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SubdivideFilamentEdges.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SetVertexRadiusFromImageAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ConnectVerticesFastAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ErodeEndVerticesAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RestoreVertexValueBackupAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	FindLinearFilamentVertexOrderAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SetVertexValueFromImageAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ConnectVerticesAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ChangeFilamentVertexPropertiesManuallyAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SetVertexMetadataFromImageAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ChangeFilamentEdgePropertiesExpressionAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	GrowEndVerticesAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SetFilamentMetadataToComponentIndexAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ChangeFilamentEdgePropertiesManuallyAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	FlattenFilamentsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SetVertexPhysicalSizeFromImageAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ijfilaments.nodes.overlay

Methods in org.hkijena.jipipe.plugins.ijfilaments.nodes.overlay with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	SetOverlayFilamentsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ijfilaments.nodes.process

Methods in org.hkijena.jipipe.plugins.ijfilaments.nodes.process with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	RemoveDuplicateVerticesAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SimplifyFilamentsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	CopyFilamentsAcrossZCTAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SmoothFilamentsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	FixOverlapsNonBranchingAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ijfilaments.nodes.split

Methods in org.hkijena.jipipe.plugins.ijfilaments.nodes.split with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	SplitFilamentsIntoCyclesAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SplitFilamentsIntoConnectedComponentsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ijfilaments.util

Methods in org.hkijena.jipipe.plugins.ijfilaments.util with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static Filaments3DGraphData	TSOAXUtils.extractFilaments(ResultsTableData snakesResult, int trackId, boolean enableTrackIdFilter, JIPipeProgressInfo progressInfo)
static ResultsTableData	TSOAXUtils.parseSnakesAsTable(Path resultsFile, com.google.common.collect.Multimap<Integer,Integer> snakeToTrackIdMap, JIPipeProgressInfo progressInfo)
static List<List<Integer>>	TSOAXUtils.parseSnakesTracks(Path resultsFile, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ijmultitemplatematching

Methods in org.hkijena.jipipe.plugins.ijmultitemplatematching with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	MultiTemplateMatchingPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)
protected void	MultiTemplateMatchingAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ijocr

Methods in org.hkijena.jipipe.plugins.ijocr with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	OCRPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ijocr.environments

Methods in org.hkijena.jipipe.plugins.ijocr.environments with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	TesseractOCREnvironment.applyConfigurationFromArtifact(JIPipeLocalArtifact artifact, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ijocr.nodes

Methods in org.hkijena.jipipe.plugins.ijocr.nodes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	TesseractOCRAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ijtrackmate

Methods in org.hkijena.jipipe.plugins.ijtrackmate with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	TrackMatePlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ijtrackmate.datatypes

Methods in org.hkijena.jipipe.plugins.ijtrackmate.datatypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	TrackCollectionData.computeEdgeFeatures(JIPipeProgressInfo progressInfo)
void	TrackCollectionData.computeTrackFeatures(JIPipeProgressInfo progressInfo)
JIPipeThumbnailData	TrackCollectionData.createThumbnail(int width, int height, JIPipeProgressInfo progressInfo)
JIPipeThumbnailData	SpotsCollectionData.createThumbnail(int width, int height, JIPipeProgressInfo progressInfo)
JIPipeData	ModelData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	SpotTrackerData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	SpotDetectorData.duplicate(JIPipeProgressInfo progressInfo)
void	ModelData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	SpotTrackerData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	SpotDetectorData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static ModelData	ModelData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static SpotTrackerData	SpotTrackerData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static TrackCollectionData	TrackCollectionData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static SpotDetectorData	SpotDetectorData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static SpotsCollectionData	SpotsCollectionData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ijtrackmate.display.algorithms

Methods in org.hkijena.jipipe.plugins.ijtrackmate.display.algorithms with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	TrackmateLegacyCacheDataViewerWindow.loadData(JIPipeDataItemStore virtualData, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ijtrackmate.display.trackscheme

Methods in org.hkijena.jipipe.plugins.ijtrackmate.display.trackscheme with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	TrackSchemeLegacyCacheDataViewerWindow.loadData(JIPipeDataItemStore virtualData, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ijtrackmate.nodes.converters

Methods in org.hkijena.jipipe.plugins.ijtrackmate.nodes.converters with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	SpotsToRoiConverter.convert(JIPipeData input, JIPipeProgressInfo progressInfo)
protected void	ConvertSpotsToRoiNode.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ConvertTracksToRoiNode.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ijtrackmate.nodes.detectors

Methods in org.hkijena.jipipe.plugins.ijtrackmate.nodes.detectors with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	CreateSpotTrackerNode.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	CreateSpotDetectorNode.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ijtrackmate.nodes.spots

Methods in org.hkijena.jipipe.plugins.ijtrackmate.nodes.spots with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	MergeSpotsNode.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SpotsToRGBNode.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MeasureSpotsNode.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SplitSpotsNode.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SpotDetectorNode.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SpotFilterNode.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ijtrackmate.nodes.tracks

Methods in org.hkijena.jipipe.plugins.ijtrackmate.nodes.tracks with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	MergeTracksNode.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MeasureEdgesNode.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	TracksToRGBNode.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SplitTracksNode.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	TrackingNode.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	TrackFilterNode.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	FollowSpotsPerTrackNode.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MeasureTracksNode.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	TrackSchemeRendererNode.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MeasureBranchesNode.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ijtrackmate.utils

Methods in org.hkijena.jipipe.plugins.ijtrackmate.utils that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	JIPipeLogger.getProgressInfo()

Methods in org.hkijena.jipipe.plugins.ijtrackmate.utils with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static void	TrackMateUtils.registerEdgeFeatures(JIPipeProgressInfo progressInfo)
static void	TrackMateUtils.registerSpotDetectors(TrackMatePlugin trackMateExtension, JIPipeProgressInfo progressInfo, org.scijava.plugin.PluginService service)
static void	TrackMateUtils.registerSpotFeatures(JIPipeProgressInfo progressInfo)
static void	TrackMateUtils.registerSpotTrackers(TrackMatePlugin trackMateExtension, JIPipeProgressInfo progressInfo, org.scijava.plugin.PluginService service)
static void	TrackMateUtils.registerTrackFeatures(JIPipeProgressInfo progressInfo)

Constructors in org.hkijena.jipipe.plugins.ijtrackmate.utils with parameters of type JIPipeProgressInfo

Constructor and Description
JIPipeLogger(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ijweka

Methods in org.hkijena.jipipe.plugins.ijweka with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	WekaPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ijweka.datatypes

Methods in org.hkijena.jipipe.plugins.ijweka.datatypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	WekaModelData.duplicate(JIPipeProgressInfo progressInfo)
void	WekaModelData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static WekaModelData	WekaModelData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ijweka.nodes

Methods in org.hkijena.jipipe.plugins.ijweka.nodes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	WekaTrainingMask2DAlgorithm2.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	WekaTrainingLabels2DAlgorithm2.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	WekaTrainingLabels2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	WekaTrainingROI3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ImportWekaModelFromFileAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	WekaClassification3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	WekaClassification2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	WekaTrainingMask2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	WekaTrainingROI2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ilastik

Methods in org.hkijena.jipipe.plugins.ilastik with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	IlastikPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)
static void	IlastikPlugin.runIlastik(IlastikEnvironment environment, List<String> parameters, boolean detached, JIPipeProgressInfo progressInfo) Runs Ilastik

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ilastik.datatypes

Methods in org.hkijena.jipipe.plugins.ilastik.datatypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	IlastikModelData.duplicate(JIPipeProgressInfo progressInfo)
void	IlastikModelData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static IlastikModelData	IlastikModelData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ilastik.environments

Methods in org.hkijena.jipipe.plugins.ilastik.environments with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	IlastikEnvironment.applyConfigurationFromArtifact(JIPipeLocalArtifact artifact, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ilastik.nodes

Methods in org.hkijena.jipipe.plugins.ilastik.nodes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	IlastikAutoContextAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	IlastikPredictionMapsObjectClassificationAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	IlastikSegmentationImageObjectClassificationAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	IlastikPixelClassificationAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	IlastikObjectClassificationAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ImportIlastikModel.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExportIlastikHDF5ImageAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ImportIlastikHDF5ImageAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.ilastik.utils.hdf5

Methods in org.hkijena.jipipe.plugins.ilastik.utils.hdf5 with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static ij.ImagePlus	IJ1Hdf5.readImage(Path file, String path, List<net.imagej.axis.AxisType> axes, JIPipeProgressInfo progressInfo) Read HDF5 dataset contents.
static void	IJ1Hdf5.writeImage(ij.ImagePlus image, Path file, String path, List<net.imagej.axis.AxisType> axes, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagej2

Methods in org.hkijena.jipipe.plugins.imagej2 with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	ImageJ2Plugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)
protected void	ImageJ2OpNode.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Constructors in org.hkijena.jipipe.plugins.imagej2 with parameters of type JIPipeProgressInfo

Constructor and Description
ImageJ2OpNodeInfo(org.scijava.Context context, net.imagej.ops.OpInfo opInfo, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagej2.algorithms

Methods in org.hkijena.jipipe.plugins.imagej2.algorithms with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	CreateIJ2ShapeAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	CreateIJ2OutOfBoundsFactoryAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagej2.compat

Methods in org.hkijena.jipipe.plugins.imagej2.compat with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
List<Object>	IJ2DataToImageWindowImageJExporter.exportData(JIPipeDataTable dataTable, ImageJExportParameters parameters, JIPipeProgressInfo progressInfo)
JIPipeDataTable	IJ2DataFromImageWindowImageJImporter.importData(List<Object> objects, ImageJImportParameters parameters, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagej2.converters

Methods in org.hkijena.jipipe.plugins.imagej2.converters with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	ImageJ2ToImageJ1Converter.convert(JIPipeData input, JIPipeProgressInfo progressInfo)
JIPipeData	ImageJ1ToImageJ2Converter.convert(JIPipeData input, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagej2.datatypes

Methods in org.hkijena.jipipe.plugins.imagej2.datatypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeThumbnailData	ImageJ2DatasetData.createThumbnail(int width, int height, JIPipeProgressInfo progressInfo)
JIPipeData	ImageJ2DatasetData.duplicate(JIPipeProgressInfo progressInfo)
void	ImageJ2DatasetData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static ImageJ2DatasetData	ImageJ2DatasetData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagej2.datatypes.outofbounds

Methods in org.hkijena.jipipe.plugins.imagej2.datatypes.outofbounds with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static MirrorImageJ2OutOfBoundsFactoryData	MirrorImageJ2OutOfBoundsFactoryData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static BorderImageJ2OutOfBoundsFactoryData	BorderImageJ2OutOfBoundsFactoryData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static PeriodicImageJ2OutOfBoundsFactoryData	PeriodicImageJ2OutOfBoundsFactoryData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static EmptyImageJ2OutOfBoundsFactory	EmptyImageJ2OutOfBoundsFactory.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagej2.datatypes.outofbounds.constant

Methods in org.hkijena.jipipe.plugins.imagej2.datatypes.outofbounds.constant with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static LongConstantValueImageJ2OutOfBoundsFactoryData	LongConstantValueImageJ2OutOfBoundsFactoryData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ShortConstantValueImageJ2OutOfBoundsFactoryData	ShortConstantValueImageJ2OutOfBoundsFactoryData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ByteConstantValueImageJ2OutOfBoundsFactoryData	ByteConstantValueImageJ2OutOfBoundsFactoryData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static IntegerConstantValueImageJ2OutOfBoundsFactoryData	IntegerConstantValueImageJ2OutOfBoundsFactoryData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static FloatConstantValueImageJ2OutOfBoundsFactoryData	FloatConstantValueImageJ2OutOfBoundsFactoryData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static DoubleConstantValueImageJ2OutOfBoundsFactoryData	DoubleConstantValueImageJ2OutOfBoundsFactoryData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagej2.datatypes.shapes

Methods in org.hkijena.jipipe.plugins.imagej2.datatypes.shapes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static HyperSphereImageJ2ShapeData	HyperSphereImageJ2ShapeData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static CenteredRectangleImageJ2ShapeData	CenteredRectangleImageJ2ShapeData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static RectangleImageJ2ShapeData	RectangleImageJ2ShapeData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static HorizontalLineImageJ2ShapeData	HorizontalLineImageJ2ShapeData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static DiamondTipsImageJ2ShapeData	DiamondTipsImageJ2ShapeData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static PairOfPointsImageJ2ShapeData	PairOfPointsImageJ2ShapeData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static EmptyImageJ2ShapeData	EmptyImageJ2ShapeData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static PeriodicLineImageJ2ShapeData	PeriodicLineImageJ2ShapeData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static DiamondImageJ2ShapeData	DiamondImageJ2ShapeData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagej2.io

Methods in org.hkijena.jipipe.plugins.imagej2.io with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
boolean	ImageJ2ModuleIO.transferFromJIPipe(ImageJ2OpNode node, JIPipeSingleIterationStep iterationStep, org.scijava.module.ModuleItem moduleItem, org.scijava.module.Module module, JIPipeProgressInfo progressInfo) Transfers data from JIPipe into the module
boolean	ServiceImageJ2ModuleIO.transferFromJIPipe(ImageJ2OpNode node, JIPipeSingleIterationStep iterationStep, org.scijava.module.ModuleItem moduleItem, org.scijava.module.Module module, JIPipeProgressInfo progressInfo)
boolean	ImageJ2ModuleIO.transferToJIPipe(ImageJ2OpNode node, JIPipeSingleIterationStep iterationStep, ParametersData moduleOutputParameters, org.scijava.module.ModuleItem moduleItem, org.scijava.module.Module module, JIPipeProgressInfo progressInfo) Transfers data from JIPipe from the module
boolean	ServiceImageJ2ModuleIO.transferToJIPipe(ImageJ2OpNode node, JIPipeSingleIterationStep iterationStep, ParametersData moduleOutputParameters, org.scijava.module.ModuleItem moduleItem, org.scijava.module.Module module, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagej2.io.data.input

Methods in org.hkijena.jipipe.plugins.imagej2.io.data.input with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
boolean	DataSlotModuleInput.transferFromJIPipe(ImageJ2OpNode node, JIPipeSingleIterationStep iterationStep, org.scijava.module.ModuleItem moduleItem, org.scijava.module.Module module, JIPipeProgressInfo progressInfo)
boolean	DataSlotModuleInput.transferToJIPipe(ImageJ2OpNode node, JIPipeSingleIterationStep iterationStep, ParametersData moduleOutputParameters, org.scijava.module.ModuleItem moduleItem, org.scijava.module.Module module, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagej2.io.data.output

Methods in org.hkijena.jipipe.plugins.imagej2.io.data.output with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
boolean	DataSlotModuleOutput.transferFromJIPipe(ImageJ2OpNode node, JIPipeSingleIterationStep iterationStep, org.scijava.module.ModuleItem moduleItem, org.scijava.module.Module module, JIPipeProgressInfo progressInfo)
boolean	DataSlotModuleOutput.transferToJIPipe(ImageJ2OpNode node, JIPipeSingleIterationStep iterationStep, ParametersData moduleOutputParameters, org.scijava.module.ModuleItem moduleItem, org.scijava.module.Module module, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagej2.io.parameters.input

Methods in org.hkijena.jipipe.plugins.imagej2.io.parameters.input with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
boolean	ParameterImageJ2ModuleInput.transferFromJIPipe(ImageJ2OpNode node, JIPipeSingleIterationStep iterationStep, org.scijava.module.ModuleItem moduleItem, org.scijava.module.Module module, JIPipeProgressInfo progressInfo)
boolean	ParameterImageJ2ModuleInput.transferToJIPipe(ImageJ2OpNode node, JIPipeSingleIterationStep iterationStep, ParametersData moduleOutputParameters, org.scijava.module.ModuleItem moduleItem, org.scijava.module.Module module, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagej2.io.parameters.output

Methods in org.hkijena.jipipe.plugins.imagej2.io.parameters.output with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
boolean	ParameterImageJ2ModuleOutput.transferFromJIPipe(ImageJ2OpNode node, JIPipeSingleIterationStep iterationStep, org.scijava.module.ModuleItem moduleItem, org.scijava.module.Module module, JIPipeProgressInfo progressInfo)
boolean	ParameterImageJ2ModuleOutput.transferToJIPipe(ImageJ2OpNode node, JIPipeSingleIterationStep iterationStep, ParametersData moduleOutputParameters, org.scijava.module.ModuleItem moduleItem, org.scijava.module.Module module, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms

Methods in org.hkijena.jipipe.plugins.imagejalgorithms with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	ImageJAlgorithmsPlugin.postprocess(JIPipeProgressInfo progressInfo)
void	ImageJAlgorithmsPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	MacroWrapperAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.analyze

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.analyze with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	AnalyzeSkeleton2D3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ImageStatisticsExpressionAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	AnnotateByImageStatisticsExpressionAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ImageStatisticsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	OrientationVectorField2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	FindParticles2D.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.background

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.background with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	RollingBallBackgroundEstimator2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.binary

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.binary with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ConnectedComponentsLabeling2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ConvexifyAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	Voronoi2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ConnectedComponentsLabeling3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	BitwiseLogicalOperationAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ConditionalInverterAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	KeepLargestRegionAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	DistanceTransformWatershed2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	BinarizeAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	UltimateErodedPoints2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RemoveLargestRegionAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	VolumeOpening3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	VolumeOpening2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.blur

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.blur with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	BoxFilter2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	GaussianBlur3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MedianBlurGreyscale8U2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	BoxFilter3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MedianBlurRGB2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	GaussianBlur2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MedianBlurFilter2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MedianBlurFilter3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.calibration

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.calibration with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	SetPhysicalDimensionsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	DrawScaleBarAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SetPhysicalDimensionsByExpressionsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	CopyPhysicalDimensionsBetweenImagesAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SetPhysicalDimensionsByAnnotationsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.colocalization

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.colocalization with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	Coloc2Node.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Constructors in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.colocalization with parameters of type JIPipeProgressInfo

Constructor and Description
CustomColoc2(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.color

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.color with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ArrangeChannelsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RenderImageToRGBAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MergeHSBChannelsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	InvertColorsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SplitRGBChannelsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	NewSplitChannelsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	CombineChannelsToRGBAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ColorToGreyscaleExpression2D.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SplitChannelsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.
protected void	MergeLABChannelsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SplitChannelsByTableAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MergeChannelsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	OverlayImagesAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.
protected void	BlendImagesAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MergeRGBChannelsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.contrast

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.contrast with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	IlluminationCorrection2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	CLAHEContrastEnhancer.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	HistogramContrastEnhancerAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ImageJContrastEnhancerAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.convert

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.convert with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ConvertImageTo8BitAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	TableToImageAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ConvertImageAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ConvertImageTo8BitAutoContrastAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	TableColumnToImageAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ImageToTableColumnAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ConvertImageToHSBAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ConvertImageToRGBAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MultipleImagesToTableAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ConvertImageTo16BitAutoContrastAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MatrixToImageAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ImageToMatrixAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ImageToTableAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ConvertImageTo32BitAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ConvertImageToLABAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ConvertImageTo16BitAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.convolve

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.convolve with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ConvolveByParameter2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ConvolveByImage2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.datasources

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.datasources with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	OMEImageFromImagePlus.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ImageStackFromFolder.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.detect

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.detect with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	FastCircularHoughSegmentation2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	CornerHarris2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	LinesHoughDetection2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	GlobalLinesHoughDetection2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	LineSegmentsHoughDetection2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	CircularHoughSegmentation2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.dimensions

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.dimensions with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	Merge2DToHyperstackAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	CreateStackAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	StackToDimensionMergerAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	NewZProjectorAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	HyperstackSlicerAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	StackTo2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	StackToDimensionMerger2Algorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExpressionSlicerAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	StackInverterAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ReorderHyperstackSlicesExpressionAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ResliceAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SplitByDimensionAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ZProjectorAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	StackSplitterAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	StackCombinerAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ReorderDimensionsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.edge

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.edge with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	LaplacianEdgeDetectorAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	CannyEdgeDetectorAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SobelEdgeDetectorAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.features

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.features with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static Vector<imagescience.image.Image>	HessianFeatureAlgorithm.run(imagescience.image.Image image, double scale, boolean absolute, JIPipeProgressInfo progressInfo)
static Vector<imagescience.image.Image>	StructureFeatureAlgorithm.run(imagescience.image.Image image, double sscale, double iscale, JIPipeProgressInfo progressInfo)
static imagescience.image.Image	DerivativesFeaturesAlgorithm.run(imagescience.image.Image image, double scale, int xorder, int yorder, int zorder, JIPipeProgressInfo progressInfo)
protected void	DifferenceOfGaussian2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	HessianFeatureAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	LocalMaxima2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	AlternatingMorphologicalFilters2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MorphologicalFeatureContrast2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	DirectionalFilter2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	FrangiVesselnessFeatures.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MeijeringVesselness2DFeatures.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	OrientationFeatures2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	LaplacianOfGaussian2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MorphologicalTextureContrast2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	DerivativesFeaturesAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	StructureFeatureAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.fft

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.fft with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static ij.process.ImageProcessor	FFTCustomFilter.resizeFilter(ij.process.ImageProcessor ip, int maxN, JIPipeProgressInfo progressInfo)
protected void	FFT2DSwapQuadrants.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	FFTCustomFilter.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	FFT2DInverseTransform.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	FFTBandPassFilter.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	FFT2DForwardTransform.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.forms

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.forms with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	ROIDrawerFormData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	MaskDrawerFormData.duplicate(JIPipeProgressInfo progressInfo)
protected void	DrawMaskAlgorithm.runGenerator(JIPipeMultiIterationStep iterationStep, JIPipeInputDataSlot inputSlot, JIPipeOutputDataSlot outputSlot, JIPipeProgressInfo progressInfo)
protected void	DrawROIAlgorithm.runGenerator(JIPipeMultiIterationStep iterationStep, JIPipeInputDataSlot inputSlot, JIPipeOutputDataSlot outputSlot, JIPipeProgressInfo progressInfo)
void	DrawMaskAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	DrawROIAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.generate

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.generate with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	GenerateMissingTablesAlgorithm.runGenerator(JIPipeMultiIterationStep iterationStep, JIPipeInputDataSlot inputSlot, JIPipeOutputDataSlot outputSlot, JIPipeProgressInfo progressInfo) Deprecated.
protected void	GenerateMissingTablesAlgorithm2.runGenerator(JIPipeMultiIterationStep iterationStep, JIPipeInputDataSlot inputSlot, JIPipeOutputDataSlot outputSlot, JIPipeProgressInfo progressInfo)
protected void	GenerateMissingZeroImage.runGenerator(JIPipeMultiIterationStep iterationStep, JIPipeInputDataSlot inputSlot, JIPipeOutputDataSlot outputSlot, JIPipeProgressInfo progressInfo)
protected void	GenerateMissingImageFromMathExpression2D.runGenerator(JIPipeMultiIterationStep iterationStep, JIPipeInputDataSlot inputSlot, JIPipeOutputDataSlot outputSlot, JIPipeProgressInfo progressInfo)
protected void	ImageFromMatrix2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	GenerateStructureElement2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	GenerateStructureElement3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	GenerateZeroImage.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	GenerateLUTImageFromColorMap.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.io

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.io with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ExportTableAsXLSXAlgorithm2.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RunImageJExporterAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExportTableAsXLSXAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.
protected void	ROIToGUI.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExportROIAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.
protected void	ExportImageAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.
protected void	ImagePlusFromGUI.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RunImageJImporterAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExportTableAlgorithm2.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ResultsTableFromGUI.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExportROIAlgorithm2.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ROIFromGUI.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExportTableAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.
protected void	ExportImageDirectorySlotAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ResultsTableToGUI.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ImagePlusToGUI.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExportImage2Algorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
void	ExportROIAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations) Deprecated.
void	ExportImageAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations) Deprecated.
void	ExportTableAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations) Deprecated.
void	ExportImageDirectorySlotAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.labels

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.labels with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	OverlapMeasureLabelsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ReplaceLabelsByTableAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	GetLabelBoundariesAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MergeLabelsToThicknessAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MergeSmallLabelsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	AnnotateWithOverlapMeasureLabelsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RemapLabelsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	LabelsToRGBAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MergeLabelsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	LabelsToMaskAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	LabelsToROIAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExpandLabelsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SeparateLabelsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SeparateTouchingLabels2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	CropLabelsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExtractLabelStatisticsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	DilateLabelsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SplitLabelsConnectedComponents2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ReplaceLabelsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MergeLabelsToBinsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	KeepLargestLabelAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.labels.filter

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.labels.filter with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	RemoveBorderLabelsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	FilterLabelsByIdAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	FilterLabelsByExpression2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	FilterLabelsByOverlapAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	FilterLabelsByStatisticsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	FilterLabelsByMaskAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RemoveLargestLabelAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	FilterLabelsByThicknessAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	FilterLabelsByExpression3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.lut

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.lut with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ApplyLUTAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SetLUTFromColorsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SetLUTFromColorMapAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	LUTInverterAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SetLUTFromImageAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RemoveLUTAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.masking

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.masking with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	SetToValueAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SetToContentAwareAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SetToColorAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.math

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.math with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	LegacyImageCalculator2DMergingAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.
protected void	ImageComparer2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.
protected void	FastImageArithmeticsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ApplyVectorMathExpression2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	DivideByMaximumAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ApplyTransform2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	LegacyImageCalculator2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.
protected void	ImageCalculator2DExpression.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	GenerateVectorFromMathExpression.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RemoveNaNFilter2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	Hessian2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.
protected void	ApplyMathExpression2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ApplyColorMathExpression2DExpression.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	LegacyApplyMath2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.
protected void	GenerateFromMathExpression2D.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RoundFloatImageAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.math.distancemap

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.math.distancemap with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	GeodesicDistanceMap2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ChamferDistanceMap3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ChamferDistanceMap2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ApplyDistanceTransform2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	LabelChamferDistanceMap3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.math.local

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.math.local with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	LocalMaximumFilter3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RegionalMinima3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	LocalMinimumFilter3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	LocalMinimumFilter2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	LocalVarianceFilter3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ImposeMaxima2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	LocalVarianceFilter2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	LocalMaximumFilter2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExtendedMinima3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RegionalMaxima3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RegionalMaxima2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ImposeMaxima3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExtendedMaxima2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExtendedMaxima3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RegionalMinima2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	LocalImageCalculator2DExpression.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExtendedMinima2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.metadata

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.metadata with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	RemoveImageMetadataAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SetImageMetadataFromTableAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExtractImageMetadataAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ChangeImageMetadataFromExpressionsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.misc

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.misc with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	DataToPreviewAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RenderJIPipeProjectAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.montage

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.montage with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	InputImagesToMontage2.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	InputImagesToMontage.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.
protected void	MontageToStackAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	StackToMontage2Algorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	StackToMontageAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.morphology

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.morphology with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	GrayscaleAttributeFiltering2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	GrayscaleAttributeFiltering3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MorphologyBinary2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MorphologicalReconstruction3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MorphologySkeletonize2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MorphologyInternalGradient2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	FindHoles2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	Morphology3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	Morphology2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MorphologicalReconstruction2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MorphologyFillHoles2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MorphologyOutline2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MorphologySkeletonize3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.noise

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.noise with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	AddSaltAndPepperNoise2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	AddNoise2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RemoveOutliersFilter2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	DespeckleFilter2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.ome

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.ome with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	OMEMetadataToTableAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExtractOMEXMLAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	AnnotateOMEWithMetadataAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExtractOMEROIAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.opticalflow

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.opticalflow with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	MSEGaussianFlowAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	PMCCBlockFlowAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MSEBlockFlowAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.overlay

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.overlay with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	SetOverlayAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExtractOverlayAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RenderOverlayAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RemoveOverlayAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.registration.simple

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.registration.simple with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	SimpleImageRegistrationAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.registration.turboreg

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.registration.turboreg with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	TurboRegRegistration2DReferencedAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	TurboRegRegistration2DSingleAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	CropToRoiAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.annotations

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.annotations with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	RoiPropertiesToAnnotationsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.assemble

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.assemble with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	AssembleExtractedROIAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExtractFromROIAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.convert

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.convert with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	RoiToRGBAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RoiToMaskAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	UnreferencedRoiToMaskAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExtractImageInRoiAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ROIToLabelsByNameAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ROIToLabelsExpressionAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	GetRoiImageAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	UnreferencedRoiToRGBAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RoiToRGBAlgorithm.runPassThrough(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.draw

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.draw with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	DrawTextRoiAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	DrawScaleBarRoiAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	DrawRectangleRoiAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.
protected void	DrawOvalRoiAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.
protected void	DrawLineOvalRectangleRoiAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.filter

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.filter with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	FilterRoiByStatisticsScriptAlgorithm.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
void	FilterRoiByStatisticsAlgorithm.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RemoveBorderRoisAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	FilterRoiByStatisticsScriptAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	FilterRoiByNameAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	FilterROIListsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SliceROIListAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	FilterRoiByStatisticsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	FilterROIByOverlapAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.generate

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.generate with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	DefineRectangularRoiAlgorithm.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.
protected void	GenerateMissingRoiListsAlgorithm.runGenerator(JIPipeMultiIterationStep iterationStep, JIPipeInputDataSlot inputSlot, JIPipeOutputDataSlot outputSlot, JIPipeProgressInfo progressInfo)
protected void	TableToPointROIAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	TableToRectangularROIAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	TableToLineROIAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	TableToCircularROIAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	TableToTextROIAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ReferencedAppendRectangularRoiAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.
protected void	MaskToRoiAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	AppendRectangularRoiAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.
protected void	ReferencedDefineRectangularRoiAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.measure

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.measure with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	CountROIAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExtractROIProfileAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RoiStatisticsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExtractRoi2DRelationStatisticsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
void	CountROIAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
protected void	CountROIAlgorithm.runPassThrough(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.merge

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.merge with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	FilterAndMergeRoiByStatisticsScriptAlgorithm.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MergeRoiListsOrderedAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MergeRoiListsUnorderedAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MergeRoiListsPairwiseOrAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	FilterAndMergeRoiByStatisticsScriptAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.modify

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.modify with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	ChangeRoiPropertiesFromExpressionsAlgorithm.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
void	ColorRoiByStatisticsAlgorithm.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	FlattenRoiAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ChangeRoiPropertiesFromAnnotationsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ScaleRoiAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RotateRoiAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	EnlargeShrinkRoiAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ColorRoiByNameAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SetRoiImageAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	OutlineRoiAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ChangeRoiPropertiesFromExpressionsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RoiFloodFillAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RoiToCentroidAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ReorderRoiDimensionsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RoiCalculatorAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	OutlineRoiConcaveHullMoreiraSantosAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ChangeRoiPropertiesFromTableAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ColorRoiByStatisticsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	UnsetRoiImageAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	CropRoiListAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ChangeRoiPropertiesAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.properties

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.properties with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	SetRoiMetadataByStatisticsAlgorithm.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SetROIMetadataFromTableAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RemoveROIMetadataAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SetRoiMetadataByStatisticsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExtractROIMetadataAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.register

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.register with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	RegisterRoiToImageByBrightnessAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.sort

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.sort with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	SortAndExtractRoiByStatisticsAlgorithm2.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
void	SortAndExtractRoiByStatisticsAlgorithm.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.
protected void	SortRoiListByExpressionsAndMeasurementsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SortAndExtractRoiByStatisticsAlgorithm2.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SortAndExtractRoiByStatisticsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.split

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.split with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	SplitRoiAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExplodeRoiAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SplitRoiConnectedComponentsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.segment

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.segment with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ClassicWatershedSegmentationAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RidgeDetector2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SeededWatershedSegmentationAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.sharpen

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.sharpen with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	LaplacianSharpen2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.statistics

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.statistics with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	AverageKeyValueThresholdStatisticsGenerator.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	KeyValueThresholdPartitionAveragesGenerator.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	KeyValueThresholdPartitionGenerator.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	KeyValueHistogramGenerator.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	KeyValueAveragesGenerator.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	KeyValueThresholdStatisticsGenerator.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	HistogramGenerator.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	FastKeyValueThresholdStatisticsGenerator.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.threshold

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.threshold with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	CustomAutoThreshold2D8Uv2Algorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	CustomAutoThreshold2D16Uv2Algorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ManualThreshold32F2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	CustomAutoThreshold2D32FAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	CustomAutoThreshold2D32Fv2Algorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	CustomAutoThreshold2D16UAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	InternalGradientSegmentation2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ManualThreshold16U2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	AutoThreshold2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ThresholdByAnnotation2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ManualThreshold8U2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	BrightSpotsSegmentation2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	PercentileThreshold8U2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	CustomAutoThreshold2D8UAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	HessianSegmentation2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.threshold.color

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.threshold.color with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ManualRGBThreshold2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ManualLABThreshold2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ManualHSBThreshold2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ColorThresholdExpression2D.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.threshold.iterative

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.threshold.iterative with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	IterativeThresholdByROIStatistics2DAlgorithm.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	IterativeThresholdByROIStatistics2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.threshold.local

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.threshold.local with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	PhansalkarLocalAutoThreshold2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SauvolaLocalAutoThreshold2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	BernsenLocalAutoThreshold2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	NiblackLocalAutoThreshold2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ContrastLocalAutoThreshold2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	LocalAutoThreshold2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.transform

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.transform with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static ij.ImagePlus	AddBorder2DAlgorithm.addBorder(ij.ImagePlus img, int left, int top, int right, int bottom, BorderMode borderMode, double colorGreyscale, Color colorRGB, JIPipeProgressInfo progressInfo)
ij.process.ImageProcessor	MergeImagesAlgorithm.getMask(JIPipeSingleIterationStep iterationStep, ImageSliceIndex sliceIndex, JIPipeProgressInfo progressInfo)
protected void	UnTileImage2DAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	TransformEqualCanvasSize2DAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	TransformEqualizeDimensionsToMaxAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	TileImage2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.
protected void	TransformRotateFree2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	Warp2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	TransformCrop2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	AddBorder2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	TransformRotate2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	LineMirror2DFromRoiAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	TransformSetHyperstackDimensionsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	TileImage2Dv2Algorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	TransformEqualizeDimensionsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	TransformScale3DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	TransformScale2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	TransformExpandCanvas2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	TransformFlip2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	LineMirror2DFromExpressionsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MergeImagesAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejalgorithms.utils

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.utils with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
ij.ImagePlus	MontageCreator.createMontage(List<MontageCreator.InputEntry> inputEntries, List<JIPipeTextAnnotation> annotations, JIPipeExpressionVariablesMap additionalVariables, JIPipeProgressInfo progressInfo)
ij.process.ImageProcessor	SimpleImageAndRoiIteratingAlgorithm.getMask(JIPipeSingleIterationStep iterationStep, ImageSliceIndex sliceIndex, JIPipeProgressInfo progressInfo)
static ij.ImagePlus	ImageJAlgorithmUtils.getMaskFromMaskOrROI(ImageROITargetArea targetArea, JIPipeSingleIterationStep iterationStep, String imageSlotName, JIPipeProgressInfo progressInfo)
static ij.process.ImageProcessor	ImageJAlgorithmUtils.getMaskProcessorFromMaskOrROI(ImageROITargetArea targetArea, JIPipeSingleIterationStep iterationStep, ImageSliceIndex sliceIndex, JIPipeProgressInfo progressInfo)
static List<HoughLineSegments.Line>	HoughLineSegments.houghGlobalLines(ij.process.ImageProcessor BW, List<Double> thetas, List<Double> rhos, List<Point> peaks, double minLength, Dimension imageSize, JIPipeProgressInfo progressInfo)
static List<HoughLineSegments.Line>	HoughLineSegments.houghLineSegments(ij.process.ImageProcessor BW, List<Double> thetas, List<Double> rhos, List<Point> peaks, double fillGap, double minLength, boolean fastMode, JIPipeProgressInfo progressInfo)
static List<Point>	HoughLineSegments.houghPeaks(ij.process.FloatProcessor H, int numPeaks, double threshold, int[] neighborhoodSize, JIPipeProgressInfo progressInfo) Implementation of Hough Peaks
void	OMEAccessorStorage.initialize(JIPipeProgressInfo progressInfo)
static ResultsTableData	ImageJAlgorithmUtils.measureLabels(ij.process.ImageProcessor label, ij.process.ImageProcessor image, ImageStatisticsSetParameter measurements, ImageSliceIndex index, ij.measure.Calibration calibration, JIPipeProgressInfo progressInfo) Measures properties of a label image
static void	ImageJAlgorithmUtils.measureROI(ij.ImagePlus referenceImage, ROI2DListData roiList, ImageStatisticsSetParameter measurements, boolean physicalUnits, String columnPrefix, ResultsTableData target, JIPipeProgressInfo progressInfo)
static void	ImageJAlgorithmUtils.measureROIRelation(ij.ImagePlus referenceImage, ROI2DListData roi1List, ROI2DListData roi2List, int measurements, boolean physicalUnits, boolean requireColocalization, boolean preciseColocalization, String columnPrefix, ResultsTableData target, JIPipeProgressInfo progressInfo)
static void	SimpleRegistrationUtils.register(ij.ImagePlus imp1, ij.ImagePlus imp2, ij.ImagePlus imp1mask, ij.ImagePlus imp2mask, mpicbg.trakem2.transform.CoordinateTransform t, Rectangle commonBounds, List<Rectangle> bounds, SimpleImageRegistrationParameters parameters, SIFTParameters siftParameters, bunwarpj.Param elasticParams, JIPipeProgressInfo progressInfo) Register two images with corresponding masks and following the features and registration models.

Constructors in org.hkijena.jipipe.plugins.imagejalgorithms.utils with parameters of type JIPipeProgressInfo

Constructor and Description
OrientationJLogWrapper(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejdatatypes

Methods in org.hkijena.jipipe.plugins.imagejdatatypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	ImageJDataTypesPlugin.postprocess(JIPipeProgressInfo progressInfo)
void	ImageJDataTypesPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejdatatypes.algorithms

Methods in org.hkijena.jipipe.plugins.imagejdatatypes.algorithms with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ApplyDisplayContrastAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	DisplayRangeCalibrationAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExtractRoi2DFromOMEImageAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SetBioFormatsExporterSettings.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejdatatypes.algorithms.annotate

Methods in org.hkijena.jipipe.plugins.imagejdatatypes.algorithms.annotate with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	AnnotateDataWithImagePropertiesAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ImagePropertiesToAnnotationAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	BioFormatsAnnotatorAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejdatatypes.algorithms.color

Methods in org.hkijena.jipipe.plugins.imagejdatatypes.algorithms.color with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ColorSpaceConverterAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejdatatypes.algorithms.io

Methods in org.hkijena.jipipe.plugins.imagejdatatypes.algorithms.io with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static ij.ImagePlus	ImportImagePlusAlgorithm.readImageFrom(Path fileName, boolean forceNativeImport, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Loads an image from a file path
protected void	BioFormatsImporterAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ImportOMEZARRFromURIAsImagePlusAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	BioFormatsExporterAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.
protected void	ImportResultsTableAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ImportRoi2DAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExportImagePlusAsOMEZARRAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	BioFormatsExporter2Algorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ImportOMEZARRFromZipDirectoryAsImagePlusAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ImportImagePlusAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ImportLUTAsRGBFromFileAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ImportImageJSampleAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
void	BioFormatsExporterAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations) Deprecated.

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejdatatypes.colorspace

Methods in org.hkijena.jipipe.plugins.imagejdatatypes.colorspace with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	RGBColorSpace.convert(ij.ImagePlus img, ColorSpace imgSpace, JIPipeProgressInfo progressInfo)
void	GreyscaleColorSpace.convert(ij.ImagePlus img, ColorSpace imgSpace, JIPipeProgressInfo progressInfo)
void	LABColorSpace.convert(ij.ImagePlus img, ColorSpace imgSpace, JIPipeProgressInfo progressInfo)
void	HSBColorSpace.convert(ij.ImagePlus img, ColorSpace imgSpace, JIPipeProgressInfo progressInfo)
void	ColorSpace.convert(ij.ImagePlus img, ColorSpace imgSpace, JIPipeProgressInfo progressInfo) Converts the image into the current color space
void	IgnoreColorSpace.convert(ij.ImagePlus img, ColorSpace imgSpace, JIPipeProgressInfo progressInfo)
void	RGBColorSpace.convertToRGB(ij.ImagePlus img, JIPipeProgressInfo progressInfo)
void	GreyscaleColorSpace.convertToRGB(ij.ImagePlus img, JIPipeProgressInfo progressInfo)
void	LABColorSpace.convertToRGB(ij.ImagePlus img, JIPipeProgressInfo progressInfo)
void	HSBColorSpace.convertToRGB(ij.ImagePlus img, JIPipeProgressInfo progressInfo)
void	ColorSpace.convertToRGB(ij.ImagePlus img, JIPipeProgressInfo progressInfo) Converts the color image into RGB (in-place)
void	IgnoreColorSpace.convertToRGB(ij.ImagePlus img, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejdatatypes.compat

Methods in org.hkijena.jipipe.plugins.imagejdatatypes.compat with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
List<Object>	RoiManagerImageJExporter.exportData(JIPipeDataTable dataTable, ImageJExportParameters parameters, JIPipeProgressInfo progressInfo)
List<Object>	OMEImageToImageWindowImageJExporter.exportData(JIPipeDataTable dataTable, ImageJExportParameters parameters, JIPipeProgressInfo progressInfo)
List<Object>	ImagePlusDataToImageWindowImageJExporter.exportData(JIPipeDataTable dataTable, ImageJExportParameters parameters, JIPipeProgressInfo progressInfo)
JIPipeDataTable	RoiManagerImageJImporter.importData(List<Object> objects, ImageJImportParameters parameters, JIPipeProgressInfo progressInfo)
JIPipeDataTable	OMEImageFromImageWindowImageJImporter.importData(List<Object> objects, ImageJImportParameters parameters, JIPipeProgressInfo progressInfo)
JIPipeDataTable	ImagePlusDataFromImageWindowImageJImporter.importData(List<Object> objects, ImageJImportParameters parameters, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejdatatypes.converters

Methods in org.hkijena.jipipe.plugins.imagejdatatypes.converters with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	LUTToImageTypeConverter.convert(JIPipeData input, JIPipeProgressInfo progressInfo)
JIPipeData	OMEImageToImagePlusTypeConverter.convert(JIPipeData input, JIPipeProgressInfo progressInfo)
JIPipeData	ImagePlusToOMEImageTypeConverter.convert(JIPipeData input, JIPipeProgressInfo progressInfo)
JIPipeData	OmeImageToOMEXMLTypeConverter.convert(JIPipeData input, JIPipeProgressInfo progressInfo)
JIPipeData	ImplicitImageTypeConverter.convert(JIPipeData input, JIPipeProgressInfo progressInfo)
JIPipeData	ImageToLUTTypeConverter.convert(JIPipeData input, JIPipeProgressInfo progressInfo)
JIPipeData	OMEImageToROITypeConverter.convert(JIPipeData input, JIPipeProgressInfo progressInfo)
JIPipeData	PlotToImageTypeConverter.convert(JIPipeData input, JIPipeProgressInfo progressInfo)
protected void	ImageTypeConverter.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejdatatypes.datatypes

Methods in org.hkijena.jipipe.plugins.imagejdatatypes.datatypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeThumbnailData	OMEImageData.createThumbnail(int width, int height, JIPipeProgressInfo progressInfo)
JIPipeThumbnailData	ROI2DListData.createThumbnail(int width, int height, JIPipeProgressInfo progressInfo)
JIPipeThumbnailData	LUTData.createThumbnail(int width, int height, JIPipeProgressInfo progressInfo)
JIPipeThumbnailData	ImagePlusData.createThumbnail(int width, int height, JIPipeProgressInfo progressInfo)
JIPipeData	OMEImageData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	ROI2DListData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	LUTData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	ImagePlusData.duplicate(JIPipeProgressInfo progressInfo)
void	OMEImageData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	ROI2DListData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	LUTData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	ImagePlusData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
List<Path>	ROI2DListData.exportOverlayToNapari(ij.ImagePlus imp, Path outputDirectory, String prefix, JIPipeProgressInfo progressInfo)
static OMEImageData	OMEImageData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ROI2DListData	ROI2DListData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo) Loads Roi from a path that contains a zip/roi file
static LUTData	LUTData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlusData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ij.ImagePlus	ImagePlusData.importImagePlusFrom(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.color

Methods in org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.color with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeThumbnailData	ImagePlusColorHSBData.createThumbnail(int width, int height, JIPipeProgressInfo progressInfo)
JIPipeThumbnailData	ImagePlusColorData.createThumbnail(int width, int height, JIPipeProgressInfo progressInfo)
JIPipeThumbnailData	ImagePlusColorLABData.createThumbnail(int width, int height, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlusColorRGBData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlusColorHSBData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlusColorData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlusColorLABData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.d2

Methods in org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.d2 with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static ImagePlusData	ImagePlus2DData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.d2.color

Methods in org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.d2.color with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeThumbnailData	ImagePlus2DColorLABData.createThumbnail(int width, int height, JIPipeProgressInfo progressInfo)
JIPipeThumbnailData	ImagePlus2DColorHSBData.createThumbnail(int width, int height, JIPipeProgressInfo progressInfo)
JIPipeThumbnailData	ImagePlus2DColorData.createThumbnail(int width, int height, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus2DColorLABData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus2DColorHSBData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus2DColorRGBData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus2DColorData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.d2.greyscale

Methods in org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.d2.greyscale with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static ImagePlusData	ImagePlus2DGreyscale8UData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus2DGreyscaleMaskData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus2DGreyscaleData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus2DGreyscale16UData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus2DGreyscale32FData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.d3

Methods in org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.d3 with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static ImagePlusData	ImagePlus3DData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.d3.color

Methods in org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.d3.color with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeThumbnailData	ImagePlus3DColorData.createThumbnail(int width, int height, JIPipeProgressInfo progressInfo)
JIPipeThumbnailData	ImagePlus3DColorHSBData.createThumbnail(int width, int height, JIPipeProgressInfo progressInfo)
JIPipeThumbnailData	ImagePlus3DColorLABData.createThumbnail(int width, int height, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus3DColorRGBData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus3DColorData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus3DColorHSBData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus3DColorLABData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.d3.greyscale

Methods in org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.d3.greyscale with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static ImagePlusData	ImagePlus3DGreyscale16UData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus3DGreyscaleMaskData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus3DGreyscale8UData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus3DGreyscale32FData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus3DGreyscaleData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.d4

Methods in org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.d4 with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static ImagePlusData	ImagePlus4DData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.d4.color

Methods in org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.d4.color with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeThumbnailData	ImagePlus4DColorHSBData.createThumbnail(int width, int height, JIPipeProgressInfo progressInfo)
JIPipeThumbnailData	ImagePlus4DColorData.createThumbnail(int width, int height, JIPipeProgressInfo progressInfo)
JIPipeThumbnailData	ImagePlus4DColorLABData.createThumbnail(int width, int height, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus4DColorHSBData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus4DColorData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus4DColorRGBData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus4DColorLABData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.d4.greyscale

Methods in org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.d4.greyscale with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static ImagePlusData	ImagePlus4DGreyscale16UData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus4DGreyscaleData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus4DGreyscale32FData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus4DGreyscale8UData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus4DGreyscaleMaskData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.d5

Methods in org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.d5 with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static ImagePlusData	ImagePlus5DData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.d5.color

Methods in org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.d5.color with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeThumbnailData	ImagePlus5DColorData.createThumbnail(int width, int height, JIPipeProgressInfo progressInfo)
JIPipeThumbnailData	ImagePlus5DColorLABData.createThumbnail(int width, int height, JIPipeProgressInfo progressInfo)
JIPipeThumbnailData	ImagePlus5DColorHSBData.createThumbnail(int width, int height, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus5DColorRGBData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus5DColorData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus5DColorLABData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus5DColorHSBData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.d5.greyscale

Methods in org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.d5.greyscale with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static ImagePlusData	ImagePlus5DGreyscale8UData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus5DGreyscale32FData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus5DGreyscaleMaskData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus5DGreyscaleData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlus5DGreyscale16UData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.fft

Methods in org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.fft with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	ImagePlusFFTData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static ImagePlusFFT3DData	ImagePlusFFT3DData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusFFTData	ImagePlusFFTData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusFFT5DData	ImagePlusFFT5DData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusFFT2DData	ImagePlusFFT2DData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusFFT4DData	ImagePlusFFT4DData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.greyscale

Methods in org.hkijena.jipipe.plugins.imagejdatatypes.datatypes.greyscale with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static ImagePlusData	ImagePlusGreyscaleData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlusGreyscale8UData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlusGreyscale32FData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlusGreyscale16UData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ImagePlusData	ImagePlusGreyscaleMaskData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imagejdatatypes.util

Methods in org.hkijena.jipipe.plugins.imagejdatatypes.util with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static void	ImageJUtils.convertHSBToRGB(ij.ImagePlus img, JIPipeProgressInfo progressInfo) Converts an HSB image to RGB (re-using the same components)
static void	ImageJUtils.convertLABToRGB(ij.ImagePlus img, JIPipeProgressInfo progressInfo) Converts an LAB image to RGB L is stored unsigned (0-255) A is stored signed (-128-127) B is stored signed (-128-127)
static void	ImageJUtils.convertRGBToHSB(ij.ImagePlus img, JIPipeProgressInfo progressInfo) Converts an RGB image to HSB (re-using the same components)
static void	ImageJUtils.convertRGBToLAB(ij.ImagePlus img, JIPipeProgressInfo progressInfo) Converts an RGB image to LAB L is stored unsigned (0-255) A is stored signed (-128-127) B is stored signed (-128-127)
static void	ImageJUtils.copyPixelsBetweenImages(ij.ImagePlus src, ij.ImagePlus target, JIPipeProgressInfo progressInfo) Copies all data from the source to the target image
static ij.ImagePlus	ImageJUtils.crop(ij.ImagePlus img, Rectangle cropped, JIPipeProgressInfo progressInfo) Cropping that can handle negative X and Y
static ij.ImagePlus	ImageJUtils.cropLegacy(ij.ImagePlus img, Rectangle cropped, JIPipeProgressInfo progressInfo) Cropping as implemented in ImageJ.
ij.ImagePlus	RoiDrawer.draw(ij.ImagePlus reference, ROI2DListData roisToDraw, JIPipeProgressInfo progressInfo)
static void	ZARRUtils.findImagesToImport(JIPipeProgressInfo progressInfo, org.janelia.saalfeldlab.n5.universe.N5TreeNode node, List<org.janelia.saalfeldlab.n5.universe.N5TreeNode> toImport)
static void	ImageJUtils.forEachIndexedCTStack(ij.ImagePlus img, TriConsumer<ij.ImagePlus,ImageSliceIndex,JIPipeProgressInfo> function, JIPipeProgressInfo progressInfo) Runs the function for each C, and T slice.
static void	ImageJUtils.forEachIndexedSlice(ij.ImagePlus img, BiConsumer<ij.process.ImageProcessor,Integer> function, JIPipeProgressInfo progressInfo) Runs the function for each slice
static void	ImageJUtils.forEachIndexedTHyperStack(ij.ImagePlus img, TriConsumer<ij.ImagePlus,ImageSliceIndex,JIPipeProgressInfo> function, JIPipeProgressInfo progressInfo) Runs the function for each T hyperstack
static void	ImageJUtils.forEachIndexedZCTSlice(ij.ImagePlus img, BiConsumer<ij.process.ImageProcessor,ImageSliceIndex> function, JIPipeProgressInfo progressInfo) Runs the function for each Z, C, and T slice.
static void	ImageJUtils.forEachIndexedZCTSliceWithProgress(ij.ImagePlus img, TriConsumer<ij.process.ImageProcessor,ImageSliceIndex,JIPipeProgressInfo> function, JIPipeProgressInfo progressInfo) Runs the function for each Z, C, and T slice.
static void	ImageJUtils.forEachIndexedZTSlice(ij.ImagePlus img, BiConsumer<Map<Integer,ij.process.ImageProcessor>,ImageSliceIndex> function, JIPipeProgressInfo progressInfo) Deprecated.
static void	ImageJUtils.forEachIndexedZTStack(ij.ImagePlus img, TriConsumer<ij.ImagePlus,ImageSliceIndex,JIPipeProgressInfo> function, JIPipeProgressInfo progressInfo)
static void	ImageJUtils.forEachSlice(ij.ImagePlus img, Consumer<ij.process.ImageProcessor> function, JIPipeProgressInfo progressInfo) Runs the function for each slice
static ij.ImagePlus	ImageJUtils.generateForEachIndexedZCTSlice(ij.ImagePlus sourceImage, BiFunction<ij.process.ImageProcessor,ImageSliceIndex,ij.process.ImageProcessor> function, JIPipeProgressInfo progressInfo) Runs the function for each Z, C, and T slice.
static ome.xml.meta.OMEXMLMetadata	ZARRUtils.readOMEXMLFromZARR(Path localZarrPath, JIPipeProgressInfo progressInfo)
static ij.ImagePlus	ImageJUtils.renderToRGBWithLUTIfNeeded(ij.ImagePlus inputImage, JIPipeProgressInfo progressInfo) Renders a non-RGB image to RGB, including LUT
static ij.ImagePlus	ImageJUtils.rotate(ij.ImagePlus img, double degrees, boolean expandCanvas, Color background, boolean addRoi, JIPipeProgressInfo progressInfo) Rotates the image by a specified amount of degrees to the right
static void	ImageJUtils.writeImageToMovie(ij.ImagePlus image, HyperstackDimension followedDimension, double fps, Path outputFile, AVICompression compression, int jpegQuality, JIPipeProgressInfo progressInfo)
static void	ZARRUtils.writeOMEXMLToZARR(Path localZarrPath, ome.xml.meta.OMEXMLMetadata metadata, JIPipeProgressInfo progressInfo)

Method parameters in org.hkijena.jipipe.plugins.imagejdatatypes.util with type arguments of type JIPipeProgressInfo

Modifier and Type	Method and Description
static void	ImageJUtils.forEachIndexedCTStack(ij.ImagePlus img, TriConsumer<ij.ImagePlus,ImageSliceIndex,JIPipeProgressInfo> function, JIPipeProgressInfo progressInfo) Runs the function for each C, and T slice.
static void	ImageJUtils.forEachIndexedTHyperStack(ij.ImagePlus img, TriConsumer<ij.ImagePlus,ImageSliceIndex,JIPipeProgressInfo> function, JIPipeProgressInfo progressInfo) Runs the function for each T hyperstack
static void	ImageJUtils.forEachIndexedZCTSliceWithProgress(ij.ImagePlus img, TriConsumer<ij.process.ImageProcessor,ImageSliceIndex,JIPipeProgressInfo> function, JIPipeProgressInfo progressInfo) Runs the function for each Z, C, and T slice.
static void	ImageJUtils.forEachIndexedZTStack(ij.ImagePlus img, TriConsumer<ij.ImagePlus,ImageSliceIndex,JIPipeProgressInfo> function, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imp

Methods in org.hkijena.jipipe.plugins.imp with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	ImpPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imp.datatypes

Methods in org.hkijena.jipipe.plugins.imp.datatypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	ImpImageToImageJImageDataTypeConverter.convert(JIPipeData input, JIPipeProgressInfo progressInfo)
JIPipeData	ImageJImageToImpImageDataTypeConverter.convert(JIPipeData input, JIPipeProgressInfo progressInfo)
JIPipeThumbnailData	ImpImageData.createThumbnail(int width, int height, JIPipeProgressInfo progressInfo)
JIPipeData	ImpImageData.duplicate(JIPipeProgressInfo progressInfo)
void	ImpImageData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static ImpImageData	ImpImageData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imp.nodes

Methods in org.hkijena.jipipe.plugins.imp.nodes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ImportImpImageAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SetImpAlphaChannelAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ConvertImpImageToImagePlusAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SplitImpAlphaChannelAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExportImpImageAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.imp.utils

Methods in org.hkijena.jipipe.plugins.imp.utils with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static void	ImpImageUtils.forEachIndexedZCTSlice(ImpImageData img, BiConsumer<BufferedImage,ImageSliceIndex> function, JIPipeProgressInfo progressInfo) Runs the function for each Z, C, and T slice.

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.jsonextensionloader

Methods in org.hkijena.jipipe.plugins.jsonextensionloader with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	JsonExtensionLoaderPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.multiparameters

Methods in org.hkijena.jipipe.plugins.multiparameters with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	MultiParametersPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)
void	MultiParameterAlgorithmsPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.multiparameters.converters

Methods in org.hkijena.jipipe.plugins.multiparameters.converters with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	ParametersDataToResultsTableDataConverter.convert(JIPipeData input, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.multiparameters.datatypes

Methods in org.hkijena.jipipe.plugins.multiparameters.datatypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	ParametersData.duplicate(JIPipeProgressInfo progressInfo)
void	ParametersData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static ParametersData	ParametersData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
protected void	ParametersLegacyDataViewerWindow.loadData(JIPipeDataItemStore virtualData, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.multiparameters.nodes

Methods in org.hkijena.jipipe.plugins.multiparameters.nodes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	DefineParametersAlgorithm.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
void	DefineParametersTableAlgorithm.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
void	MultiplyParametersAlgorithm.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
void	ExtractParametersAlgorithm.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ConvertParametersToTableAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	GenerateParametersFromExpressionAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	DefineParametersFromGlobalParametersAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	DefineParametersFromTableAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MergeParametersAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	AnnotationsToParametersAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeProgressInfo progressInfo)
protected void	ParametersToAnnotationsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.napari

Methods in org.hkijena.jipipe.plugins.napari with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
List<Path>	NapariOverlay.exportOverlayToNapari(ij.ImagePlus imp, Path outputDirectory, String prefix, JIPipeProgressInfo progressInfo)
static void	NapariPlugin.launchNapari(JIPipeDesktopWorkbench workbench, List<String> arguments, JIPipeProgressInfo progressInfo, boolean interactive)
void	NapariPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)
static void	NapariPlugin.runNapari(PythonEnvironment environment, List<String> parameters, boolean detached, JIPipeProgressInfo progressInfo) Runs Napari

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.nodetemplate

Methods in org.hkijena.jipipe.plugins.nodetemplate with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	NodeTemplateBoxToolPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.omero

Methods in org.hkijena.jipipe.plugins.omero with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
boolean	OMEROPlugin.canActivate(JIPipeValidationReport report, JIPipeProgressInfo progressInfo)
void	OMEROPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.omero.datatypes

Methods in org.hkijena.jipipe.plugins.omero.datatypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	OMERODatasetReferenceData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	OMEROPlateReferenceData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	OMEROScreenReferenceData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	OMEROAnnotationReferenceData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	OMEROProjectReferenceData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	OMEROGroupReferenceData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	OMEROImageReferenceData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	OMEROWellReferenceData.duplicate(JIPipeProgressInfo progressInfo)
void	OMERODatasetReferenceData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	OMEROPlateReferenceData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	OMEROScreenReferenceData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	OMEROAnnotationReferenceData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	OMEROProjectReferenceData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	OMEROGroupReferenceData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	OMEROImageReferenceData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	OMEROWellReferenceData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static OMERODatasetReferenceData	OMERODatasetReferenceData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static OMEROPlateReferenceData	OMEROPlateReferenceData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static OMEROScreenReferenceData	OMEROScreenReferenceData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static OMEROAnnotationReferenceData	OMEROAnnotationReferenceData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static OMEROProjectReferenceData	OMEROProjectReferenceData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static OMEROGroupReferenceData	OMEROGroupReferenceData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static OMEROImageReferenceData	OMEROImageReferenceData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static OMEROWellReferenceData	OMEROWellReferenceData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.omero.nodes.annotate

Methods in org.hkijena.jipipe.plugins.omero.nodes.annotate with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	AnnotateOMEROScreenReferenceAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	AnnotateOMEROWellReferenceAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	AnnotateOMEROPlateReferenceAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	AnnotateOMEROProjectReferenceAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	AnnotateOMEROImageReferenceAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	AnnotateOMERODatasetReferenceAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.omero.nodes.datasources

Methods in org.hkijena.jipipe.plugins.omero.nodes.datasources with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	OMEROGroupReferenceDataSource.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	OMERODatasetReferenceDataSource.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	OMEROPlateReferenceDataSource.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	OMEROScreenReferenceDataSource.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	OMEROProjectReferenceDataSource.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	OMEROWellReferenceDataSource.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	OMEROImageReferenceDataSource.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.omero.nodes.download

Methods in org.hkijena.jipipe.plugins.omero.nodes.download with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	DownloadOMEROTableAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	DownloadOMEROImageAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.omero.nodes.manage

Methods in org.hkijena.jipipe.plugins.omero.nodes.manage with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	OMEROCreateDatasetAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.omero.nodes.navigate

Methods in org.hkijena.jipipe.plugins.omero.nodes.navigate with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	OMEROListDatasetsAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	OMEROListWellsAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	OMEROListGroupsAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	OMEROListWellImagesAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	OMEROListScreensAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	OMEROListProjectsAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	OMEROListPlatesAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	OMEROListDatasetImagesAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.omero.nodes.upload

Methods in org.hkijena.jipipe.plugins.omero.nodes.upload with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	UploadOMEROImageToDatasetAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	UploadOMEROTableAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.omero.util

Methods in org.hkijena.jipipe.plugins.omero.util that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	OMEROGateway.getProgressInfo()

Methods in org.hkijena.jipipe.plugins.omero.util with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
List<Long>	OMEROImageUploader.upload(Path imagePath, Set<String> tags, Map<String,String> keyValuePairs, OMEROGateway gateway, JIPipeProgressInfo progressInfo)

Constructors in org.hkijena.jipipe.plugins.omero.util with parameters of type JIPipeProgressInfo

Constructor and Description
OMEROGateway(omero.gateway.LoginCredentials credentials, JIPipeProgressInfo progressInfo)
OMEROImageUploader(omero.gateway.LoginCredentials credentials, String eMail, long datasetId, omero.gateway.SecurityContext context, JIPipeProgressInfo progressInfo)
OMEROToJIPipeLogger(JIPipeProgressInfo progressInfo)
OMEROUploadToJIPipeLogger(JIPipeProgressInfo info)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.omnipose

Methods in org.hkijena.jipipe.plugins.omnipose with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	OmniposePlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.omnipose.algorithms

Methods in org.hkijena.jipipe.plugins.omnipose.algorithms with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	Omnipose0TrainingAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	Omnipose0InferenceAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ImportPretrainedOmnipose0ModelAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.omnipose.legacy.algorithms

Methods in org.hkijena.jipipe.plugins.omnipose.legacy.algorithms with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	LegacyOmnipose0TrainingAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.
protected void	LegacyOmnipose0InferenceAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.opencv

Methods in org.hkijena.jipipe.plugins.opencv with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	OpenCvPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.opencv.datatypes

Methods in org.hkijena.jipipe.plugins.opencv.datatypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	ImageJToOpenCvDataTypeConverter.convert(JIPipeData input, JIPipeProgressInfo progressInfo)
JIPipeData	OpenCvToImageJDataTypeConverter.convert(JIPipeData input, JIPipeProgressInfo progressInfo)
JIPipeThumbnailData	OpenCvImageData.createThumbnail(int width, int height, JIPipeProgressInfo progressInfo)
JIPipeData	OpenCvImageData.duplicate(JIPipeProgressInfo progressInfo)
void	OpenCvImageData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static OpenCvImageData	OpenCvImageData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.opencv.nodes

Methods in org.hkijena.jipipe.plugins.opencv.nodes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ConvertDepthAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	InpaintingAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ConvertTypeAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.opencv.nodes.filters

Methods in org.hkijena.jipipe.plugins.opencv.nodes.filters with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	BilateralFilterAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.opencv.nodes.generators

Methods in org.hkijena.jipipe.plugins.opencv.nodes.generators with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	GaussianKernelGenerator.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	GaborKernelGenerator.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.opencv.utils

Methods in org.hkijena.jipipe.plugins.opencv.utils with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static void	OpenCvImageUtils.forEachIndexedZCTSlice(OpenCvImageData img, BiConsumer<org.bytedeco.javacpp.opencv_core.Mat,ImageSliceIndex> function, JIPipeProgressInfo progressInfo) Runs the function for each Z, C, and T slice.
static OpenCvImageData	OpenCvImageUtils.generateForEachIndexedZCTSlice(OpenCvImageData img, BiFunction<org.bytedeco.javacpp.opencv_core.Mat,ImageSliceIndex,org.bytedeco.javacpp.opencv_core.Mat> function, JIPipeProgressInfo progressInfo) Runs the function for each Z, C, and T slice.

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.parameters

Methods in org.hkijena.jipipe.plugins.parameters with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	StandardParametersPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.pipelinerender

Methods in org.hkijena.jipipe.plugins.pipelinerender with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	PipelineRenderPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.plots

Methods in org.hkijena.jipipe.plugins.plots with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	PlotsPlugin.postprocess(JIPipeProgressInfo progressInfo)
void	PlotsPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.plots.converters

Methods in org.hkijena.jipipe.plugins.plots.converters with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	PlotToTableConverter.convert(JIPipeData input, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.plots.datatypes

Methods in org.hkijena.jipipe.plugins.plots.datatypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeThumbnailData	JFreeChartPlotData.createThumbnail(int width, int height, JIPipeProgressInfo progressInfo)
JIPipeData	JFreeChartPlotData.duplicate(JIPipeProgressInfo progressInfo)
void	JFreeChartPlotData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static <T extends JFreeChartPlotData> T	JFreeChartPlotData.importData(JIPipeReadDataStorage storage, Class<T> klass, JIPipeProgressInfo progressInfo)
static LineCategoryJFreeChartPlotData	LineCategoryJFreeChartPlotData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static Pie3DJFreeChartPlotData	Pie3DJFreeChartPlotData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static Pie2DJFreeChartPlotData	Pie2DJFreeChartPlotData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static LineStatisticalCategoryJFreeChartPlotData	LineStatisticalCategoryJFreeChartPlotData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static BarStatisticalCategoryJFreeChartPlotData	BarStatisticalCategoryJFreeChartPlotData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static BarCategoryJFreeChartPlotData	BarCategoryJFreeChartPlotData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static StackedBarCategoryJFreeChartPlotData	StackedBarCategoryJFreeChartPlotData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ScatterXYJFreeChartPlotData	ScatterXYJFreeChartPlotData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static HistogramJFreeChartPlotData	HistogramJFreeChartPlotData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static BarBoxAndWhiskerCategoryJFreeChartPlotData	BarBoxAndWhiskerCategoryJFreeChartPlotData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static LineXYJFreeChartPlotData	LineXYJFreeChartPlotData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static JFreeChartPlotDataSeries	JFreeChartPlotDataSeries.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static <T extends JFreeChartPlotData> T	JFreeChartPlotData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.plots.nodes

Methods in org.hkijena.jipipe.plugins.plots.nodes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	PlotTablesAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.
protected void	PlotTables2Algorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.processes

Methods in org.hkijena.jipipe.plugins.processes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	ProcessesPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.python

Methods in org.hkijena.jipipe.plugins.python with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	PythonEnvironment.applyConfigurationFromArtifact(JIPipeLocalArtifact artifact, JIPipeProgressInfo progressInfo)
static void	PythonUtils.cleanup(Map<String,Path> inputSlotPaths, Map<String,Path> outputSlotPaths, JIPipeProgressInfo progressInfo)
static void	PythonUtils.extractOutputs(JIPipeMultiIterationStep iterationStep, Map<String,Path> outputSlotPaths, List<JIPipeOutputDataSlot> outputSlots, JIPipeTextAnnotationMergeMode annotationMergeStrategy, JIPipeProgressInfo progressInfo)
static void	PythonUtils.extractOutputs(JIPipeSingleIterationStep iterationStep, Map<String,Path> outputSlotPaths, List<JIPipeOutputDataSlot> outputSlots, JIPipeTextAnnotationMergeMode annotationMergeStrategy, JIPipeProgressInfo progressInfo)
static void	PythonUtils.extractOutputs(Map<String,Path> outputSlotPaths, List<JIPipeOutputDataSlot> outputSlots, JIPipeProgressInfo progressInfo)
void	PythonPackageLibraryEnvironment.generateCode(StringBuilder code, JIPipeProgressInfo progressInfo) Installs the library if needed
static Map<String,Path>	PythonUtils.installInputSlots(StringBuilder code, JIPipeMultiIterationStep iterationStep, JIPipeGraphNode node, List<JIPipeInputDataSlot> effectiveInputSlots, Path workDirectory, JIPipeProgressInfo progressInfo)
static Map<String,Path>	PythonUtils.installInputSlots(StringBuilder code, JIPipeSingleIterationStep iterationStep, JIPipeGraphNode node, List<JIPipeInputDataSlot> effectiveInputSlots, Path workDirectory, JIPipeProgressInfo progressInfo)
static Map<String,Path>	PythonUtils.installInputSlots(StringBuilder code, List<JIPipeInputDataSlot> effectiveInputSlots, Path workDirectory, JIPipeProgressInfo progressInfo)
static Map<String,Path>	PythonUtils.installOutputSlots(StringBuilder code, List<JIPipeOutputDataSlot> outputSlots, Path workDirectory, JIPipeProgressInfo progressInfo)
void	PythonPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)
void	CorePythonPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)
static void	PythonUtils.runPython(Path scriptFile, PythonEnvironment environment, List<Path> libraryPaths, boolean suppressLogs, boolean detached, JIPipeProgressInfo progressInfo) Runs a Python script file
static void	PythonUtils.runPython(String[] arguments, PythonEnvironment environment, List<Path> libraryPaths, Map<String,String> additionalEnvironmentVariables, boolean suppressLogs, boolean detached, JIPipeProgressInfo progressInfo) Runs Python with a set of arguments
static void	PythonUtils.runPython(String code, PythonEnvironment environment, List<Path> libraryPaths, boolean suppressLogs, JIPipeProgressInfo progressInfo)
static void	PythonUtils.setupLogger(org.apache.commons.exec.CommandLine commandLine, org.apache.commons.exec.DefaultExecutor executor, boolean suppressLogs, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.python.adapter

Methods in org.hkijena.jipipe.plugins.python.adapter with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	JIPipePythonAdapterLibraryEnvironment.applyConfigurationFromArtifact(JIPipeLocalArtifact artifact, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.python.algorithms.jython

Methods in org.hkijena.jipipe.plugins.python.algorithms.jython with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	MergingJythonScriptAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SimpleIteratingJythonScriptAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	IteratingJythonScriptAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
void	JythonScriptAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.python.algorithms.python

Methods in org.hkijena.jipipe.plugins.python.algorithms.python with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	MergingPythonScriptAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	IteratingPythonScriptAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
void	PythonScriptAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.python.installers

Methods in org.hkijena.jipipe.plugins.python.installers that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	SelectCondaEnvPythonInstaller.getProgressInfo()
JIPipeProgressInfo	SelectSystemPythonInstaller.getProgressInfo()
JIPipeProgressInfo	SelectVirtualEnvPythonInstaller.getProgressInfo()

Methods in org.hkijena.jipipe.plugins.python.installers with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	SelectCondaEnvPythonInstaller.setProgressInfo(JIPipeProgressInfo progressInfo)
void	SelectSystemPythonInstaller.setProgressInfo(JIPipeProgressInfo progressInfo)
void	SelectVirtualEnvPythonInstaller.setProgressInfo(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.r

Methods in org.hkijena.jipipe.plugins.r with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	REnvironment.applyConfigurationFromArtifact(JIPipeLocalArtifact artifact, JIPipeProgressInfo progressInfo)
void	RPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)
static void	RUtils.runR(Path scriptFile, REnvironment environment, JIPipeProgressInfo progressInfo)
static void	RUtils.runR(String script, REnvironment environment, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.r.algorithms

Methods in org.hkijena.jipipe.plugins.r.algorithms with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	MergingRScriptAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ImportRDatasetAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	IteratingRScriptAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.scene3d

Methods in org.hkijena.jipipe.plugins.scene3d with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	Scene3DPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.scene3d.datatypes

Methods in org.hkijena.jipipe.plugins.scene3d.datatypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static Scene3DData	Scene3DData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.scene3d.model

Methods in org.hkijena.jipipe.plugins.scene3d.model with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
Scene3DMeshGeometry	Scene3DGeometry.toMeshGeometry(JIPipeProgressInfo progressInfo) Returns a mesh equivalent of this geometry

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.scene3d.model.geometries

Methods in org.hkijena.jipipe.plugins.scene3d.model.geometries with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
Scene3DIndexedMeshGeometry	Scene3DUnindexedMeshGeometry.toIndexedMeshGeometry(JIPipeProgressInfo progressInfo) Converts this unindexed mesh geometry into an optimized, indexed mesh geometry
Scene3DMeshGeometry	Scene3DUnindexedMeshGeometry.toMeshGeometry(JIPipeProgressInfo progressInfo)
Scene3DMeshGeometry	Scene3DIndexedMeshGeometry.toMeshGeometry(JIPipeProgressInfo progressInfo)
Scene3DMeshGeometry	Scene3DSphereGeometry.toMeshGeometry(JIPipeProgressInfo progressInfo)
Scene3DMeshGeometry	Scene3DLineGeometry.toMeshGeometry(JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.scene3d.nodes

Methods in org.hkijena.jipipe.plugins.scene3d.nodes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	MergeScenesAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	CreateLineMeshAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MaskTo3DMeshAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExportScene3DToColladaAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.
protected void	GroupSceneAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExportScene3DToColladaAlgorithm2.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	CreateSphereMeshAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
void	ExportScene3DToColladaAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations) Deprecated.

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.settings

Methods in org.hkijena.jipipe.plugins.settings with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	StandardSettingsPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.strings

Methods in org.hkijena.jipipe.plugins.strings with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	StringDataConverter.convert(JIPipeData input, JIPipeProgressInfo progressInfo)
JIPipeThumbnailData	StringData.createThumbnail(int width, int height, JIPipeProgressInfo progressInfo)
JIPipeData	StringData.duplicate(JIPipeProgressInfo progressInfo)
void	StringData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static JsonData	JsonData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static XMLData	XMLData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static StringData	StringData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static URIData	URIData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
protected void	TextLegacyCacheDataViewerWindow.loadData(JIPipeDataItemStore virtualData, JIPipeProgressInfo progressInfo)
void	StringsPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.strings.datasources

Methods in org.hkijena.jipipe.plugins.strings.datasources with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ImportJsonAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ImportXMLAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ImportStringAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	StringDefinitionDataSource.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.strings.nodes.json

Methods in org.hkijena.jipipe.plugins.strings.nodes.json with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ExtractTextFromJsonAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	AnnotateWithJsonDataAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExtractJsonDataAsTableAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.strings.nodes.text

Methods in org.hkijena.jipipe.plugins.strings.nodes.text with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	TextDataToTableAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	TableToCSVTextAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ProcessTextDataAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	AnnotateWithTextDataAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.strings.nodes.xml

Methods in org.hkijena.jipipe.plugins.strings.nodes.xml with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ExtractTextFromXMLAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ExtractXPathDataAsTableAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	PrettifyXMLAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	AnnotateWithXPathDataAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.tables

Methods in org.hkijena.jipipe.plugins.tables with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	StringArrayColumnToTableConverter.convert(JIPipeData input, JIPipeProgressInfo progressInfo)
JIPipeData	DoubleArrayColumnToTableConverter.convert(JIPipeData input, JIPipeProgressInfo progressInfo)
JIPipeData	TableColumnDataReference.duplicate(JIPipeProgressInfo progressInfo)
void	TableColumnDataReference.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	TablesPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.tables.compat

Methods in org.hkijena.jipipe.plugins.tables.compat with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
List<Object>	ResultsTableDataImageJExporter.exportData(JIPipeDataTable dataTable, ImageJExportParameters parameters, JIPipeProgressInfo progressInfo)
JIPipeDataTable	ResultsTableDataImageJImporter.importData(List<Object> objects, ImageJImportParameters parameters, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.tables.datatypes

Methods in org.hkijena.jipipe.plugins.tables.datatypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeThumbnailData	ResultsTableData.createThumbnail(int width, int height, JIPipeProgressInfo progressInfo)
JIPipeData	RowIndexTableColumnData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	ZeroTableColumnData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	ResultsTableData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	RelabeledTableColumnData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	StringArrayTableColumnData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	DoubleArrayTableColumnData.duplicate(JIPipeProgressInfo progressInfo)
JIPipeData	FloatArrayTableColumnData.duplicate(JIPipeProgressInfo progressInfo)
void	RowIndexTableColumnData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	ZeroTableColumnData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	ResultsTableData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	RelabeledTableColumnData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	StringArrayTableColumnData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	DoubleArrayTableColumnData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
void	FloatArrayTableColumnData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static RowIndexTableColumnData	RowIndexTableColumnData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ZeroTableColumnData	ZeroTableColumnData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static ResultsTableData	ResultsTableData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static AnnotationTableData	AnnotationTableData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static StringArrayTableColumnData	StringArrayTableColumnData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static DoubleArrayTableColumnData	DoubleArrayTableColumnData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)
static FloatArrayTableColumnData	FloatArrayTableColumnData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.tables.display

Methods in org.hkijena.jipipe.plugins.tables.display with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	TableViewerLegacyCacheDataViewerWindow.loadData(JIPipeDataItemStore virtualData, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.tables.nodes

Methods in org.hkijena.jipipe.plugins.tables.nodes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	ModifyAndMergeTablesScript.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
void	ModifyTablesScript.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
void	TablesFromScript.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
void	DefineTablesAlgorithm.run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	GenerateTableFromExpressionAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ModifyTablesScript.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	IntegrateColumnsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ModifyTableColumnNamesAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	GenerateColumnAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.tables.nodes.annotations

Methods in org.hkijena.jipipe.plugins.tables.nodes.annotations with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	AnnotateByTablePropertiesAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ConvertAnnotationTableToAnnotatedTables.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	AddAnnotationColumnsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	AnnotateDataWithTableValues.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.tables.nodes.columns

Methods in org.hkijena.jipipe.plugins.tables.nodes.columns with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ConvertColumnsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ColumnsToAnnotationsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ColumnToStringAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ApplyExpressionToTableByColumnAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RemoveColumnAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RenameSingleColumnsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ColumnToNumericAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SortTableColumnsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ApplyExpressionToColumnsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.
protected void	RenameTableColumnsToAnnotationAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RenameTableColumns2Algorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RenameTableColumnsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.tables.nodes.filter

Methods in org.hkijena.jipipe.plugins.tables.nodes.filter with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	FilterTableRowsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SliceTableRowsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	FilterTablesAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.tables.nodes.merge

Methods in org.hkijena.jipipe.plugins.tables.nodes.merge with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	MergeColumnsAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MergeTableRowsAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MergeTableColumnsSimpleAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MergeTableColumnsSupplementMergingAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	MergeTableColumnsSupplementAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.tables.nodes.rows

Methods in org.hkijena.jipipe.plugins.tables.nodes.rows with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	ApplyExpressionPerRowAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.
protected void	AddMissingRowsInSeriesAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ApplyExpressionPerRowAlgorithm2.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SortTableRowsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.tables.nodes.split

Methods in org.hkijena.jipipe.plugins.tables.nodes.split with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	SplitTableIntoColumnsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SplitTableIntoRowsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SplitTableByColumnsAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.tables.nodes.statistics

Methods in org.hkijena.jipipe.plugins.tables.nodes.statistics with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	DBSCANClusteringAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	FuzzyKMeansClusteringAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	KMeansClusteringAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.tables.nodes.transform

Methods in org.hkijena.jipipe.plugins.tables.nodes.transform with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	MeltTableAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	TableToHistogramAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Deprecated.
protected void	ApplyExpressionPerLabelAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	UnMeltTableAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	TableToHistogram2Algorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.tools

Methods in org.hkijena.jipipe.plugins.tools with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	ToolsPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.utils

Methods in org.hkijena.jipipe.plugins.utils with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
void	UtilitiesPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.utils.algorithms

Methods in org.hkijena.jipipe.plugins.utils.algorithms with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	UsePlaceholderForMissingDataAlgorithm.runGenerator(JIPipeMultiIterationStep iterationStep, JIPipeInputDataSlot inputSlot, JIPipeOutputDataSlot outputSlot, JIPipeProgressInfo progressInfo)
protected void	IterationStepSlicer.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	DuplicateDataAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ConverterAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RunExpressionAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ToDataStringAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	ImportJIPipeSlotFolderAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
void	SelectDataTableRowsAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	DataSlicer.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	SortRowsByAnnotationsAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	SortRowsByExpressionAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	SleepAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.utils.algorithms.datatable

Methods in org.hkijena.jipipe.plugins.utils.algorithms.datatable with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	MergeDataToTableAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	AnnotateWithDataTableProperties.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	PullDataTableAnnotations.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	PushDataTableAnnotations.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
void	ExtractTableAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.utils.algorithms.distribute

Methods in org.hkijena.jipipe.plugins.utils.algorithms.distribute with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	DistributeDataRandomlyByCountAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	DistributeDataRandomlyByPercentageAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.utils.algorithms.iterationsteps

Methods in org.hkijena.jipipe.plugins.utils.algorithms.iterationsteps with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	MultiIterationStepCheckerAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	CrasherAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	SingleIterationStepCheckerAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.utils.algorithms.meta

Methods in org.hkijena.jipipe.plugins.utils.algorithms.meta with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	RunJIPipeProjectAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	PathsToJIPipeProjectParametersAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	GetJIPipeSlotFolderAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.utils.algorithms.processes

Methods in org.hkijena.jipipe.plugins.utils.algorithms.processes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
protected void	RunProcessMergingAlgorithm.runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
protected void	RunProcessIteratingAlgorithm.runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.plugins.utils.datatypes

Methods in org.hkijena.jipipe.plugins.utils.datatypes with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeData	PathDataToJIPipeOutputConverter.convert(JIPipeData input, JIPipeProgressInfo progressInfo)
void	JIPipeOutputData.exportData(JIPipeWriteDataStorage storage, String name, boolean forceName, JIPipeProgressInfo progressInfo)
static JIPipeOutputData	JIPipeOutputData.importData(JIPipeReadDataStorage storage, JIPipeProgressInfo progressInfo)

Uses of JIPipeProgressInfo in org.hkijena.jipipe.utils

Methods in org.hkijena.jipipe.utils that return JIPipeProgressInfo

Modifier and Type	Method and Description
JIPipeProgressInfo	ProcessUtils.ProcessTree.getProgressInfo()
JIPipeProgressInfo	ProcessUtils.ExtendedExecutor.getProgressInfo()

Methods in org.hkijena.jipipe.utils with parameters of type JIPipeProgressInfo

Modifier and Type	Method and Description
static void	PathUtils.copyDirectory(Path sourcePath, Path targetPath, JIPipeProgressInfo progressInfo)
static void	PathUtils.copyDirectory(Path sourcePath, Path targetPath, Predicate<Path> directoryFilter, JIPipeProgressInfo progressInfo)
static void	PathUtils.copyOrLink(Path source, Path target, JIPipeProgressInfo progressInfo)
static void	ArchiveUtils.decompressTarGZ(Path zipFile, Path targetDir, JIPipeProgressInfo progressInfo)
static void	ArchiveUtils.decompressZipFile(Path zipFile, Path targetDir, JIPipeProgressInfo progressInfo) Unzips a file
static void	PathUtils.deleteDirectoryRecursively(Path path, JIPipeProgressInfo progressInfo)
static void	PathUtils.deleteIfExists(Path path, JIPipeProgressInfo progressInfo)
static void	WebUtils.download(URL url, Path outputFile, String label, JIPipeProgressInfo progressInfo)
static void	WebUtils.downloadNative(URL url, Path outputFile, String label, JIPipeProgressInfo progressInfo) The native download method written in Java
static void	ProcessUtils.killProcessTree(long pid, JIPipeProgressInfo progressInfo)
static void	ProcessUtils.launchProcess(ProcessEnvironment environment, JIPipeExpressionVariablesMap variables, Map<String,String> overrideEnvironmentVariables, boolean handleQuoting, JIPipeProgressInfo progressInfo) Runs a process detached
static void	PathUtils.makeAllUnixExecutable(Path dir, JIPipeProgressInfo progressInfo) Marks all files in that directory as Unix executable
static String	ProcessUtils.queryFast(Path executable, JIPipeProgressInfo progressInfo, String... args) Queries standard output with a timeout.
static void	ProcessUtils.runProcess(ProcessEnvironment environment, JIPipeExpressionVariablesMap variables, Map<String,String> overrideEnvironmentVariables, boolean handleQuoting, JIPipeProgressInfo progressInfo) Runs a process
static void	ProcessUtils.setupLogger(org.apache.commons.exec.CommandLine commandLine, org.apache.commons.exec.DefaultExecutor executor, JIPipeProgressInfo progressInfo)
static void	ArchiveUtils.zipDirectory(Path rootPath, String rootPathName, Path zipFile, JIPipeProgressInfo progressInfo)
static void	ArchiveUtils.zipFileOrDirectory(Path fileToZip, Path zipFile, JIPipeProgressInfo progressInfo)

Constructors in org.hkijena.jipipe.utils with parameters of type JIPipeProgressInfo

Constructor and Description
ExtendedExecutor(long timeout, JIPipeProgressInfo progressInfo)
FileLocker(JIPipeProgressInfo progressInfo, Path lockFilePath)
IJLogToJIPipeProgressInfoPump(JIPipeProgressInfo target)
ProcessTree(Process process, JIPipeProgressInfo progressInfo)
RunCancellationExecuteWatchdog(long timeout, JIPipeProgressInfo progressInfo, ProcessUtils.ExtendedExecutor extendedExecutor) Creates a new watchdog with a given timeout.
RunCancellationWatchdog(JIPipeProgressInfo progressInfo)