org.hkijena.jipipe.plugins.ijfilaments.nodes.modify

Class ChangeFilamentVertexPropertiesManuallyAlgorithm

java.lang.Object

org.hkijena.jipipe.api.parameters.AbstractJIPipeParameterCollection

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.algorithm.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.api.nodes.algorithm.JIPipeSimpleIteratingAlgorithm

org.hkijena.jipipe.plugins.ijfilaments.nodes.modify.ChangeFilamentVertexPropertiesManuallyAlgorithm

All Implemented Interfaces:

JIPipeSlotConfiguration.SlotConfigurationChangedEventListener, JIPipeFunctionallyComparable, JIPipeIterationStepAlgorithm, JIPipeAdaptiveParametersAlgorithm, JIPipeParallelizedAlgorithm, JIPipeParameterCollection, JIPipeParameterCollection.ParameterChangedEventListener, JIPipeParameterCollection.ParameterStructureChangedEventListener, JIPipeParameterCollection.ParameterUIChangedEventListener, JIPipeValidatable

public class ChangeFilamentVertexPropertiesManuallyAlgorithm
extends JIPipeSimpleIteratingAlgorithm

Nested Class Summary

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.BaseDirectoryChangedEventEmitter, JIPipeGraphNode.BaseDirectoryChangedEventListener, JIPipeGraphNode.NodeSlotsChangedEvent, JIPipeGraphNode.NodeSlotsChangedEventEmitter, JIPipeGraphNode.NodeSlotsChangedEventListener, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterChangedEventEmitter, JIPipeParameterCollection.ParameterChangedEventListener, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEventEmitter, JIPipeParameterCollection.ParameterStructureChangedEventListener, JIPipeParameterCollection.ParameterUIChangedEvent, JIPipeParameterCollection.ParameterUIChangedEventEmitter, JIPipeParameterCollection.ParameterUIChangedEventListener

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.algorithm.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
ChangeFilamentVertexPropertiesManuallyAlgorithm(ChangeFilamentVertexPropertiesManuallyAlgorithm other)
ChangeFilamentVertexPropertiesManuallyAlgorithm(JIPipeNodeInfo info)

Method Summary

Modifier and Type	Method and Description
OptionalIntegerParameter	getCentroidC()
OptionalIntegerParameter	getCentroidT()
OptionalDoubleParameter	getCentroidX()
OptionalDoubleParameter	getCentroidY()
OptionalDoubleParameter	getCentroidZ()
OptionalColorParameter	getColor()
StringAndStringPairParameter.List	getMetadata()
OptionalQuantity	getPhysicalSizeX()
OptionalQuantity	getPhysicalSizeY()
OptionalQuantity	getPhysicalSizeZ()
OptionalDoubleParameter	getRadius()
OptionalDoubleParameter	getValue()
VertexMaskParameter	getVertexMask()
protected void	runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Runs code on one data row
void	setCentroidC(OptionalIntegerParameter centroidC)
void	setCentroidT(OptionalIntegerParameter centroidT)
void	setCentroidX(OptionalDoubleParameter centroidX)
void	setCentroidY(OptionalDoubleParameter centroidY)
void	setCentroidZ(OptionalDoubleParameter centroidZ)
void	setColor(OptionalColorParameter color)
void	setMetadata(StringAndStringPairParameter.List metadata)
void	setPhysicalSizeX(OptionalQuantity physicalSizeX)
void	setPhysicalSizeY(OptionalQuantity physicalSizeY)
void	setPhysicalSizeZ(OptionalQuantity physicalSizeZ)
void	setRadius(OptionalDoubleParameter radius)
void	setValue(OptionalDoubleParameter value)

Methods inherited from class org.hkijena.jipipe.api.nodes.algorithm.JIPipeSimpleIteratingAlgorithm

createUIInputSlotIconDescriptionMenuItems, generateDataBatchesGenerationResult, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getParallelizationBatchSize, isAllowEmptyIterationStep, isParameterUIVisible, isParameterUIVisible, reportValidity, runParameterSet, runPassThrough, supportsParallelization

Methods inherited from class org.hkijena.jipipe.api.nodes.algorithm.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, getUIInputSlotIcon, getUIInputSlotIconBaseDimensions, onParameterChanged, run

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, canPassThrough, functionallyEquals, getDefaultCustomExpressionVariables, getRuntimePartition, isEnabled, isEnableDefaultCustomExpressionVariables, isPassThrough, isPostprocessor, isPreprocessor, isSkipped, loadExample, onDeserialized, runPassThrough, setEnabled, setPassThrough, setRuntimePartition, setSkipped

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

archiveTo, canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, emitNodeSlotsChangedEvent, fromJson, getAliasIdInParentGraph, getBaseDirectory, getBaseDirectoryChangedEventEmitter, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getCustomName, getDependencies, getDisplayName, getEnvironmentDependencies, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getName, getNewScratch, getNodeSlotsChangedEventEmitter, getNodeUILocationPerViewModePerCompartment, getNodeUILocationWithin, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProject, getProjectCompartment, getProjectDataDirs, getProjectDirectory, getRuntimeProject, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getTextDescription, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isUiLocked, isVisibleIn, onSlotConfigurationChanged, renderInputSlots, renderOutputSlots, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setNodeUILocationPerViewModePerCompartment, setNodeUILocationWithin, setNodeUILocationWithin, setParentGraph, setProjectDirectory, setRuntimeProject, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, setUiLocked, toggleSlot, toJson, updateGraphNodeSlots

Methods inherited from class org.hkijena.jipipe.api.parameters.AbstractJIPipeParameterCollection

getParameterChangedEventEmitter, getParameterStructureChangedEventEmitter, getParameterUIChangedEventEmitter, onParameterStructureChanged, onParameterUIChanged, registerSubParameter, registerSubParameters

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.nodes.iterationstep.JIPipeIterationStepAlgorithm

generateDataBatchesDryRun

Methods inherited from interface org.hkijena.jipipe.api.nodes.JIPipeAdaptiveParametersAlgorithm

installUIOverrideParameterEditor, installUIParameterOptions

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

deserializeFromJsonNode, emitParameterChangedEvent, emitParameterStructureChangedEvent, emitParameterUIChangedEvent, getContextActions, getParameter, getParameterAccess, getParameterChangedEventEmitter, getParameterStructureChangedEventEmitter, getParameterUIChangedEventEmitter, serializeToJsonFile, serializeToJsonGenerator, serializeToJsonString, setParameter

Methods inherited from interface org.hkijena.jipipe.api.validation.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection.ParameterUIChangedEventListener

onParameterUIChanged

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection.ParameterStructureChangedEventListener

onParameterStructureChanged

Constructor Detail

ChangeFilamentVertexPropertiesManuallyAlgorithm

public ChangeFilamentVertexPropertiesManuallyAlgorithm(JIPipeNodeInfo info)

ChangeFilamentVertexPropertiesManuallyAlgorithm

public ChangeFilamentVertexPropertiesManuallyAlgorithm(ChangeFilamentVertexPropertiesManuallyAlgorithm other)

Method Detail

runIteration

protected void runIteration(JIPipeSingleIterationStep iterationStep,
                            JIPipeIterationContext iterationContext,
                            JIPipeGraphNodeRunContext runContext,
                            JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeSimpleIteratingAlgorithm

Runs code on one data row

Specified by:

runIteration in class JIPipeSimpleIteratingAlgorithm

Parameters:

iterationStep - The data interface

iterationContext - the iteration context

runContext - the run context

progressInfo - the progress info from the run

getCentroidX

public OptionalDoubleParameter getCentroidX()

setCentroidX

public void setCentroidX(OptionalDoubleParameter centroidX)

getCentroidY

public OptionalDoubleParameter getCentroidY()

setCentroidY

public void setCentroidY(OptionalDoubleParameter centroidY)

getCentroidZ

public OptionalDoubleParameter getCentroidZ()

setCentroidZ

public void setCentroidZ(OptionalDoubleParameter centroidZ)

getCentroidC

public OptionalIntegerParameter getCentroidC()

setCentroidC

public void setCentroidC(OptionalIntegerParameter centroidC)

getCentroidT

public OptionalIntegerParameter getCentroidT()

setCentroidT

public void setCentroidT(OptionalIntegerParameter centroidT)

getRadius

public OptionalDoubleParameter getRadius()

setRadius

public void setRadius(OptionalDoubleParameter radius)

getColor

public OptionalColorParameter getColor()

setColor

public void setColor(OptionalColorParameter color)

getValue

public OptionalDoubleParameter getValue()

setValue

public void setValue(OptionalDoubleParameter value)

getPhysicalSizeX

public OptionalQuantity getPhysicalSizeX()

setPhysicalSizeX

public void setPhysicalSizeX(OptionalQuantity physicalSizeX)

getPhysicalSizeY

public OptionalQuantity getPhysicalSizeY()

setPhysicalSizeY

public void setPhysicalSizeY(OptionalQuantity physicalSizeY)

getPhysicalSizeZ

public OptionalQuantity getPhysicalSizeZ()

setPhysicalSizeZ

public void setPhysicalSizeZ(OptionalQuantity physicalSizeZ)

getMetadata

public StringAndStringPairParameter.List getMetadata()

setMetadata

public void setMetadata(StringAndStringPairParameter.List metadata)

getVertexMask

public VertexMaskParameter getVertexMask()