org.hkijena.jipipe.api.nodes.iterationstep

Interface JIPipeIterationStepAlgorithm

All Known Implementing Classes:

AddAnnotationColumnsAlgorithm, AddBorder2DAlgorithm, AddMissingRowsInSeriesAlgorithm, AddNoise2DAlgorithm, AddSaltAndPepperNoise2DAlgorithm, AlternatingMorphologicalFilters2DAlgorithm, AnalyzeSkeleton2D3DAlgorithm, AnnotateByExpression, AnnotateByImageStatisticsExpressionAlgorithm, AnnotateByProjectPaths, AnnotateByTablePropertiesAlgorithm, AnnotateDataWithImagePropertiesAlgorithm, AnnotateDataWithTableValues, AnnotateOMERODatasetReferenceAlgorithm, AnnotateOMEROImageReferenceAlgorithm, AnnotateOMEROPlateReferenceAlgorithm, AnnotateOMEROProjectReferenceAlgorithm, AnnotateOMEROScreenReferenceAlgorithm, AnnotateOMEROWellReferenceAlgorithm, AnnotateOMEWithMetadataAlgorithm, AnnotateWithData, AnnotateWithDataString, AnnotateWithDataTableProperties, AnnotateWithJsonDataAlgorithm, AnnotateWithOverlapMeasureLabelsAlgorithm, AnnotateWithPathProperties, AnnotateWithSourceSlot, AnnotateWithTextDataAlgorithm, AnnotateWithXPathDataAlgorithm, AnnotationsToParametersAlgorithm, AnnotationTableFromFile, AnnotationTableToPaths, AnnotationToPath, AppendRectangularRoiAlgorithm, ApplyColorMathExpression2DExpression, ApplyDisplayContrastAlgorithm, ApplyDistanceTransform2DAlgorithm, ApplyExpressionPerLabelAlgorithm, ApplyExpressionPerRowAlgorithm, ApplyExpressionPerRowAlgorithm2, ApplyExpressionToColumnsAlgorithm, ApplyExpressionToTableByColumnAlgorithm, ApplyLUTAlgorithm, ApplyMathExpression2DAlgorithm, ApplyTransform2DAlgorithm, ApplyVectorMathExpression2DAlgorithm, ArrangeChannelsAlgorithm, AssembleExtractedROIAlgorithm, AutoThreshold2DAlgorithm, AverageKeyValueThresholdStatisticsGenerator, BernsenLocalAutoThreshold2DAlgorithm, BilateralFilterAlgorithm, BinarizeAlgorithm, BioFormatsAnnotatorAlgorithm, BioFormatsExporter2Algorithm, BioFormatsExporterAlgorithm, BioFormatsImporterAlgorithm, BitwiseLogicalOperationAlgorithm, BlendImagesAlgorithm, BoxFilter2DAlgorithm, BoxFilter3DAlgorithm, BrightSpotsSegmentation2DAlgorithm, CannyEdgeDetectorAlgorithm, Cellpose1InferenceAlgorithm, Cellpose1TrainingAlgorithm, Cellpose2SegmentationInferenceAlgorithm, Cellpose2TrainingAlgorithm, Cellpose3DenoiseInferenceAlgorithm, Cellpose3DenoiseTrainingAlgorithm, Cellpose3SegmentationInferenceAlgorithm, Cellpose3SegmentationTrainingAlgorithm, ChamferDistanceMap2DAlgorithm, ChamferDistanceMap3DAlgorithm, ChangeFilamentEdgePropertiesExpressionAlgorithm, ChangeFilamentEdgePropertiesManuallyAlgorithm, ChangeFilamentVertexPropertiesExpressionAlgorithm, ChangeFilamentVertexPropertiesManuallyAlgorithm, ChangeImageMetadataFromExpressionsAlgorithm, ChangeRoi3DPropertiesAlgorithm, ChangeRoi3DPropertiesFromExpressionsAlgorithm, ChangeRoi3DPropertiesFromTableAlgorithm, ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm, ChangeRoiPropertiesAlgorithm, ChangeRoiPropertiesFromAnnotationsAlgorithm, ChangeRoiPropertiesFromExpressionsAlgorithm, ChangeRoiPropertiesFromTableAlgorithm, CircularHoughSegmentation2DAlgorithm, CLAHEContrastEnhancer, ClassicWatershedSegmentationAlgorithm, Clij2ExecuteKernelIterating, Clij2ExecuteKernelSimpleIterating, Clij2PullAlgorithm, Clij2PushAlgorithm, CLIJCommandNode, Coloc2Node, ColorRoi3DByNameAlgorithm, ColorRoi3DByStatisticsAlgorithm, ColorRoiByNameAlgorithm, ColorRoiByStatisticsAlgorithm, ColorSpaceConverterAlgorithm, ColorThresholdExpression2D, ColorToGreyscaleExpression2D, ColumnsToAnnotationsAlgorithm, ColumnToNumericAlgorithm, ColumnToStringAlgorithm, CombineChannelsToRGBAlgorithm, ConcatenateByParameter, ConcatenatePaths, ConditionalInverterAlgorithm, ConnectedComponentsLabeling2DAlgorithm, ConnectedComponentsLabeling3DAlgorithm, ConnectVerticesAlgorithm, ConnectVerticesFastAlgorithm, ConstantSpotSegmentation3DAlgorithm, ContrastLocalAutoThreshold2DAlgorithm, ConvertAnnotationTableToAnnotatedTables, ConvertColumnsAlgorithm, ConvertDataToOutputPath, ConvertDepthAlgorithm, ConverterAlgorithm, ConvertFilamentCyclesToROIAlgorithm, ConvertFilamentsTo3DMeshAlgorithm, ConvertFilamentsToLabels2Algorithm, ConvertFilamentsToLabelsAlgorithm, ConvertFilamentsToMaskAlgorithm, ConvertFilamentsToRGBAlgorithm, ConvertFilamentsToRoi3DAlgorithm, ConvertFilamentsToRoiAlgorithm, ConvertImageAlgorithm, ConvertImageTo16BitAlgorithm, ConvertImageTo16BitAutoContrastAlgorithm, ConvertImageTo32BitAlgorithm, ConvertImageTo8BitAlgorithm, ConvertImageTo8BitAutoContrastAlgorithm, ConvertImageToHSBAlgorithm, ConvertImageToLABAlgorithm, ConvertImageToRGBAlgorithm, ConvertImpImageToImagePlusAlgorithm, ConvertParametersToTableAlgorithm, ConvertROIToFilamentsAlgorithm, ConvertSpotsToRoiNode, ConvertToAnnotationTable, ConvertToExportedPath, ConvertTracksToRoiNode, ConvertTypeAlgorithm, ConvexifyAlgorithm, ConvolveByImage2DAlgorithm, ConvolveByParameter2DAlgorithm, CopyFilamentsAcrossZCTAlgorithm, CopyPath, CopyPhysicalDimensionsBetweenImagesAlgorithm, CornerHarris2DAlgorithm, CountROIAlgorithm, CrasherAlgorithm, CreateDirectory, CreateIJ2OutOfBoundsFactoryAlgorithm, CreateIJ2ShapeAlgorithm, CreateLineMeshAlgorithm, CreateSphereMeshAlgorithm, CreateSpotDetectorNode, CreateSpotTrackerNode, CreateStackAlgorithm, CropLabelsAlgorithm, CropRoiListAlgorithm, CropToRoiAlgorithm, CustomAutoThreshold2D16UAlgorithm, CustomAutoThreshold2D16Uv2Algorithm, CustomAutoThreshold2D32FAlgorithm, CustomAutoThreshold2D32Fv2Algorithm, CustomAutoThreshold2D8UAlgorithm, CustomAutoThreshold2D8Uv2Algorithm, DataAnnotationToStringAnnotation, DataToPreviewAlgorithm, DBSCANClusteringAlgorithm, DefineParametersFromGlobalParametersAlgorithm, DefineParametersFromTableAlgorithm, DerivativesFeaturesAlgorithm, DespeckleFilter2DAlgorithm, DifferenceOfGaussian2DAlgorithm, DifferenceSpotSegmentation3DAlgorithm, DilateLabelsAlgorithm, DirectionalFilter2DAlgorithm, DisplayRangeCalibrationAlgorithm, DistanceMap3DAlgorithm, DistanceTransformWatershed2DAlgorithm, DistributeDataRandomlyByCountAlgorithm, DistributeDataRandomlyByPercentageAlgorithm, DivideByMaximumAlgorithm, DownloadFilesDataSource, DownloadOMEROImageAlgorithm, DownloadOMEROTableAlgorithm, DrawLineOvalRectangleRoiAlgorithm, DrawMaskAlgorithm, DrawOvalRoiAlgorithm, DrawRectangleRoiAlgorithm, DrawROIAlgorithm, DrawScaleBarAlgorithm, DrawScaleBarRoiAlgorithm, DrawTextRoiAlgorithm, DuplicateDataAlgorithm, EdgeFilter3DAlgorithm, EnlargeShrinkRoiAlgorithm, ErodedVolumeFraction3DAlgorithm, ErodeEndVerticesAlgorithm, ExpandLabelsAlgorithm, ExplodeRoi3DListAlgorithm, ExplodeRoiAlgorithm, ExportData, ExportDataByParameter2, ExportDataTable, ExportDataTableByParameter, ExportIlastikHDF5ImageAlgorithm, ExportImage2Algorithm, ExportImageAlgorithm, ExportImageDirectorySlotAlgorithm, ExportImagePlusAsOMEZARRAlgorithm, ExportImpImageAlgorithm, ExportROI3DAlgorithm, ExportROI3DAlgorithm2, ExportROIAlgorithm, ExportROIAlgorithm2, ExportScene3DToColladaAlgorithm, ExportScene3DToColladaAlgorithm2, ExportTableAlgorithm, ExportTableAlgorithm2, ExportTableAsXLSXAlgorithm, ExportTableAsXLSXAlgorithm2, ExpressionSlicerAlgorithm, ExtendedMaxima2DAlgorithm, ExtendedMaxima3DAlgorithm, ExtendedMinima2DAlgorithm, ExtendedMinima3DAlgorithm, ExtractAndReplaceAnnotation, ExtractDataAnnotation, ExtractFileName, ExtractFromROIAlgorithm, ExtractImageInRoiAlgorithm, ExtractImageMetadataAlgorithm, ExtractJsonDataAsTableAlgorithm, ExtractLabelStatisticsAlgorithm, ExtractOMEROIAlgorithm, ExtractOMEXMLAlgorithm, ExtractOverlay3DAlgorithm, ExtractOverlayAlgorithm, ExtractParent, ExtractRoi2DFromOMEImageAlgorithm, ExtractRoi2DRelationStatisticsAlgorithm, ExtractROI3DMetadataAlgorithm, ExtractRoi3DRelationStatisticsAlgorithm, ExtractRoi3DStatisticsAlgorithm, ExtractROIMetadataAlgorithm, ExtractROIProfileAlgorithm, ExtractTextFromJsonAlgorithm, ExtractTextFromXMLAlgorithm, ExtractXPathDataAsTableAlgorithm, Fast3DFiltersAdaptiveAlgorithm, Fast3DFiltersAlgorithm, Fast3DFiltersCloseAlgorithm, Fast3DFiltersLocalMaxAlgorithm, Fast3DFiltersMaxAlgorithm, Fast3DFiltersMeanAlgorithm, Fast3DFiltersMedianAlgorithm, Fast3DFiltersMinAlgorithm, Fast3DFiltersOpenAlgorithm, Fast3DFiltersSobelAlgorithm, Fast3DFiltersTopHatAlgorithm, Fast3DFiltersVarianceAlgorithm, FastCircularHoughSegmentation2DAlgorithm, FastImageArithmeticsAlgorithm, FastKeyValueThresholdStatisticsGenerator, FFT2DForwardTransform, FFT2DInverseTransform, FFT2DSwapQuadrants, FFTBandPassFilter, FFTCustomFilter, FilamentCyclesToComponentsAlgorithm, FilterAndMergeRoiByStatisticsScriptAlgorithm, FilterByAnnotationIfElse, FilterFilamentEdgesByProperties, FilterFilamentsByProperties, FilterFilamentVerticesByProperties, FilterLabelsByExpression2DAlgorithm, FilterLabelsByExpression3DAlgorithm, FilterLabelsByIdAlgorithm, FilterLabelsByMaskAlgorithm, FilterLabelsByOverlapAlgorithm, FilterLabelsByStatisticsAlgorithm, FilterLabelsByThicknessAlgorithm, FilterPaths, FilterRoi3DByOverlapAlgorithm, FilterRoi3DByStatisticsAlgorithm, FilterRoi3DListsAlgorithm, FilterRoiByNameAlgorithm, FilterROIByOverlapAlgorithm, FilterRoiByStatisticsAlgorithm, FilterRoiByStatisticsScriptAlgorithm, FilterROIListsAlgorithm, FilterTableRowsAlgorithm, FilterTablesAlgorithm, FindHoles2DAlgorithm, FindLinearFilamentVertexOrderAlgorithm, FindMaxima3DAlgorithm, FindParticles2D, FindParticles3DAlgorithm, FixOverlapsNonBranchingAlgorithm, FlattenFilamentsAlgorithm, FlattenRoiAlgorithm, FollowSpotsPerTrackNode, FrangiVesselnessFeatures, FuzzyKMeansClusteringAlgorithm, GaborKernelGenerator, GaussianBlur2DAlgorithm, GaussianBlur3DAlgorithm, GaussianFitSpotSegmentation3DAlgorithm, GaussianKernelGenerator, GenerateColumnAlgorithm, GenerateFromMathExpression2D, GenerateLUTImageFromColorMap, GenerateMissingImageFromMathExpression2D, GenerateMissingRoiListsAlgorithm, GenerateMissingTablesAlgorithm, GenerateMissingTablesAlgorithm2, GenerateMissingZeroImage, GenerateParametersFromExpressionAlgorithm, GenerateStructureElement2DAlgorithm, GenerateStructureElement3DAlgorithm, GenerateTableFromExpressionAlgorithm, GenerateUniqueAnnotation, GenerateVectorFromMathExpression, GenerateZeroImage, GeodesicDistanceMap2DAlgorithm, GetJIPipeSlotFolderAlgorithm, GetLabelBoundariesAlgorithm, GetRoiImageAlgorithm, GlobalLinesHoughDetection2DAlgorithm, GrayscaleAttributeFiltering2DAlgorithm, GrayscaleAttributeFiltering3DAlgorithm, GroupSceneAlgorithm, GrowEndVerticesAlgorithm, Hessian2DAlgorithm, HessianFeatureAlgorithm, HessianSegmentation2DAlgorithm, HistogramContrastEnhancerAlgorithm, HistogramGenerator, HyperstackSlicerAlgorithm, HysteresisSegmentation3DAlgorithm, IlastikAutoContextAlgorithm, IlastikObjectClassificationAlgorithm, IlastikPixelClassificationAlgorithm, IlastikPredictionMapsObjectClassificationAlgorithm, IlastikSegmentationImageObjectClassificationAlgorithm, IlluminationCorrection2DAlgorithm, ImageCalculator2DExpression, ImageComparer2DAlgorithm, ImageFromMatrix2DAlgorithm, ImageJ2OpNode, ImageJContrastEnhancerAlgorithm, ImagePlusFromGUI, ImagePlusToGUI, ImagePropertiesToAnnotationAlgorithm, ImageStackFromFolder, ImageStatisticsAlgorithm, ImageStatisticsExpressionAlgorithm, ImageToMatrixAlgorithm, ImageToTableAlgorithm, ImageToTableColumnAlgorithm, ImageTypeConverter, ImportCellposeModelFromFileAlgorithm, ImportCellposeSizeModelFromFileAlgorithm, ImportDataRowFolder, ImportDataTableArchive, ImportDataTableDirectory, ImportFilamentsFromJsonAlgorithm, ImportIlastikHDF5ImageAlgorithm, ImportIlastikModel, ImportImageJSampleAlgorithm, ImportImagePlusAlgorithm, ImportImpImageAlgorithm, ImportJIPipeSlotFolderAlgorithm, ImportJsonAlgorithm, ImportLegacyCellposeModelAlgorithm, ImportLegacyCellposeSizeModelAlgorithm, ImportLUTAsRGBFromFileAlgorithm, ImportOMEZARRFromURIAsImagePlusAlgorithm, ImportOMEZARRFromZipDirectoryAsImagePlusAlgorithm, ImportPretrainedCellpose2ModelAlgorithm, ImportPretrainedCellpose3DenoiseModelAlgorithm, ImportPretrainedCellpose3SegmentationModelAlgorithm, ImportPretrainedOmnipose0ModelAlgorithm, ImportRDatasetAlgorithm, ImportResultsTableAlgorithm, ImportRoi2DAlgorithm, ImportROI3DAlgorithm, ImportStringAlgorithm, ImportWekaModelFromFileAlgorithm, ImportXMLAlgorithm, ImposeMaxima2DAlgorithm, ImposeMaxima3DAlgorithm, InpaintingAlgorithm, InputImagesToMontage, InputImagesToMontage2, IntegrateColumnsAlgorithm, InternalGradientSegmentation2DAlgorithm, InvertColorsAlgorithm, IteratingFormProcessorAlgorithm, IteratingJythonScriptAlgorithm, IteratingPythonScriptAlgorithm, IteratingRScriptAlgorithm, IterationStepSlicer, IterativeThreshold3DAlgorithm, IterativeThresholdByROIStatistics2DAlgorithm, JIPipeGraphWrapperAlgorithm, JIPipeIteratingAlgorithm, JIPipeIteratingMissingDataGeneratorAlgorithm, JIPipeMergingAlgorithm, JIPipeMissingDataGeneratorAlgorithm, JIPipeNodeGroup, JIPipeParameterlessSimpleIteratingAlgorithm, JIPipeSimpleIteratingAlgorithm, JIPipeSingleIterationAlgorithm, JsonAlgorithm, KeepLargestLabelAlgorithm, KeepLargestRegionAlgorithm, KeyValueAveragesGenerator, KeyValueHistogramGenerator, KeyValueThresholdPartitionAveragesGenerator, KeyValueThresholdPartitionGenerator, KeyValueThresholdStatisticsGenerator, KMeansClusteringAlgorithm, LabelChamferDistanceMap3DAlgorithm, LabelsToMaskAlgorithm, LabelsToRGBAlgorithm, LabelsToROIAlgorithm, LaplacianEdgeDetectorAlgorithm, LaplacianOfGaussian2DAlgorithm, LaplacianSharpen2DAlgorithm, LegacyApplyMath2DAlgorithm, LegacyCellpose2InferenceAlgorithm, LegacyCellpose2TrainingAlgorithm, LegacyImageCalculator2DAlgorithm, LegacyImageCalculator2DMergingAlgorithm, LegacyOmnipose0InferenceAlgorithm, LegacyOmnipose0TrainingAlgorithm, LineMirror2DFromExpressionsAlgorithm, LineMirror2DFromRoiAlgorithm, LineSegmentsHoughDetection2DAlgorithm, LinesHoughDetection2DAlgorithm, ListFiles, ListSubfolders, ListZARRDirectoryZIPDatasetsAlgorithm, ListZARRURIDatasetsAlgorithm, LocalAutoThreshold2DAlgorithm, LocalImageCalculator2DExpression, LocalMaxima2DAlgorithm, LocalMaximumFilter2DAlgorithm, LocalMaximumFilter3DAlgorithm, LocalMeanSpotSegmentation3DAlgorithm, LocalMinimumFilter2DAlgorithm, LocalMinimumFilter3DAlgorithm, LocalVarianceFilter2DAlgorithm, LocalVarianceFilter3DAlgorithm, LoopStartNode, LUTInverterAlgorithm, MacroWrapperAlgorithm, ManualHSBThreshold2DAlgorithm, ManualLABThreshold2DAlgorithm, ManualRGBThreshold2DAlgorithm, ManualThreshold16U2DAlgorithm, ManualThreshold32F2DAlgorithm, ManualThreshold8U2DAlgorithm, MaskTo3DMeshAlgorithm, MaskToRoiAlgorithm, MatrixToImageAlgorithm, MeasureBranchesNode, MeasureEdgesAlgorithm, MeasureEdgesNode, MeasureFilamentsAlgorithm, MeasureSpotsNode, MeasureTracksNode, MeasureVerticesAlgorithm, MedianBlurFilter2DAlgorithm, MedianBlurFilter3DAlgorithm, MedianBlurGreyscale8U2DAlgorithm, MedianBlurRGB2DAlgorithm, MeijeringVesselness2DFeatures, MeltTableAlgorithm, Merge2DToHyperstackAlgorithm, MergeAnnotations, MergeChannelsAlgorithm, MergeColumnsAlgorithm, MergeDataToTableAlgorithm, MergeFilamentsAlgorithm, MergeHSBChannelsAlgorithm, MergeImagesAlgorithm, MergeLABChannelsAlgorithm, MergeLabelsAlgorithm, MergeLabelsToBinsAlgorithm, MergeLabelsToThicknessAlgorithm, MergeParametersAlgorithm, MergeRGBChannelsAlgorithm, MergeROI3DAlgorithm, MergeRoiListsOrderedAlgorithm, MergeRoiListsPairwiseOrAlgorithm, MergeRoiListsUnorderedAlgorithm, MergeScenesAlgorithm, MergeSmallLabelsAlgorithm, MergeSpotsNode, MergeTableColumnsSimpleAlgorithm, MergeTableColumnsSupplementAlgorithm, MergeTableColumnsSupplementMergingAlgorithm, MergeTableRowsAlgorithm, MergeTracksNode, MergingFormProcessorAlgorithm, MergingJythonScriptAlgorithm, MergingPythonScriptAlgorithm, MergingRScriptAlgorithm, ModifyAnnotationScript, ModifyPath, ModifyPathWithExpression, ModifyTableColumnNamesAlgorithm, ModifyTablesScript, MontageToStackAlgorithm, MorphologicalFeatureContrast2DAlgorithm, MorphologicalReconstruction2DAlgorithm, MorphologicalReconstruction3DAlgorithm, MorphologicalTextureContrast2DAlgorithm, Morphology2DAlgorithm, Morphology3DAlgorithm, MorphologyBinary2DAlgorithm, MorphologyFillHoles2DAlgorithm, MorphologyInternalGradient2DAlgorithm, MorphologyOutline2DAlgorithm, MorphologySkeletonize2DAlgorithm, MorphologySkeletonize3DAlgorithm, MSEBlockFlowAlgorithm, MSEGaussianFlowAlgorithm, MultiIterationStepCheckerAlgorithm, MultipleImagesToTableAlgorithm, MultiTemplateMatchingAlgorithm, NewSplitChannelsAlgorithm, NewZProjectorAlgorithm, NiblackLocalAutoThreshold2DAlgorithm, NucleiSegmentation3DAlgorithm, OMEImageFromImagePlus, OMEMetadataToTableAlgorithm, OMEROCreateDatasetAlgorithm, OMERODatasetReferenceDataSource, OMEROGroupReferenceDataSource, OMEROImageReferenceDataSource, OMEROListDatasetImagesAlgorithm, OMEROListDatasetsAlgorithm, OMEROListGroupsAlgorithm, OMEROListPlatesAlgorithm, OMEROListProjectsAlgorithm, OMEROListScreensAlgorithm, OMEROListWellImagesAlgorithm, OMEROListWellsAlgorithm, OMEROPlateReferenceDataSource, OMEROProjectReferenceDataSource, OMEROScreenReferenceDataSource, OMEROWellReferenceDataSource, Omnipose0InferenceAlgorithm, Omnipose0TrainingAlgorithm, OrientationFeatures2DAlgorithm, OrientationVectorField2DAlgorithm, OutlineRoi3DAlgorithm, OutlineRoiAlgorithm, OutlineRoiConcaveHullMoreiraSantosAlgorithm, OverlapMeasureLabelsAlgorithm, OverlayImagesAlgorithm, OverwriteAnnotations, ParametersToAnnotationsAlgorithm, PathFromUserDataSource, PathsToJIPipeProjectParametersAlgorithm, PercentileThreshold8U2DAlgorithm, PhansalkarLocalAutoThreshold2DAlgorithm, PlotTables2Algorithm, PlotTablesAlgorithm, PMCCBlockFlowAlgorithm, PrettifyXMLAlgorithm, ProcessTextDataAlgorithm, ProjectUserFolderDataSource, PullDataTableAnnotations, PushDataTableAnnotations, ReferencedAppendRectangularRoiAlgorithm, ReferencedDefineRectangularRoiAlgorithm, RegionalMaxima2DAlgorithm, RegionalMaxima3DAlgorithm, RegionalMinima2DAlgorithm, RegionalMinima3DAlgorithm, RegisterRoiToImageByBrightnessAlgorithm, RelativizeByParameter, RelativizePaths, RemapLabelsAlgorithm, RemoveAnnotationAlgorithm, RemoveBorderFilaments, RemoveBorderLabelsAlgorithm, RemoveBorderRoi3DAlgorithm, RemoveBorderRoisAlgorithm, RemoveColumnAlgorithm, RemoveDataAnnotations, RemoveDuplicateVerticesAlgorithm, RemoveImageMetadataAlgorithm, RemoveLargestLabelAlgorithm, RemoveLargestRegionAlgorithm, RemoveLUTAlgorithm, RemoveNaNFilter2DAlgorithm, RemoveOutliersFilter2DAlgorithm, RemoveOverlay3DAlgorithm, RemoveOverlayAlgorithm, RemoveROI3DMetadataAlgorithm, RemoveROIMetadataAlgorithm, RemoveVertexValueBackupsAlgorithm, RenameAnnotation, RenameByString, RenameDataAnnotation, RenameSingleColumnsAlgorithm, RenameTableColumns2Algorithm, RenameTableColumnsAlgorithm, RenameTableColumnsToAnnotationAlgorithm, RenderImageToRGBAlgorithm, RenderJIPipeProjectAlgorithm, RenderOverlay3DAlgorithm, RenderOverlayAlgorithm, ReorderDimensionsAlgorithm, ReorderHyperstackSlicesExpressionAlgorithm, ReorderRoiDimensionsAlgorithm, ReplaceLabelsAlgorithm, ReplaceLabelsByTableAlgorithm, ResliceAlgorithm, RestoreVertexValueBackupAlgorithm, ResultsTableFromGUI, ResultsTableToGUI, RidgeDetector2DAlgorithm, Roi2DToRoi3DConverterAlgorithm, ROI3DCalculatorAlgorithm, Roi3DFromLabelsAlgorithm, Roi3DTo3DMeshAlgorithm, Roi3DToLabelsAlgorithm, Roi3DToMaskAlgorithm, Roi3DToRGBAlgorithm, Roi3DToRoi2DConverterAlgorithm, RoiCalculatorAlgorithm, RoiFloodFillAlgorithm, ROIFromGUI, RoiPropertiesToAnnotationsAlgorithm, RoiStatisticsAlgorithm, RoiToCentroidAlgorithm, ROIToGUI, ROIToLabelsByNameAlgorithm, ROIToLabelsExpressionAlgorithm, RoiToMaskAlgorithm, RoiToRGBAlgorithm, RollingBallBackgroundEstimator2DAlgorithm, RotateRoiAlgorithm, RoundFloatImageAlgorithm, RunExpressionAlgorithm, RunImageJExporterAlgorithm, RunImageJImporterAlgorithm, RunJIPipeProjectAlgorithm, RunProcessIteratingAlgorithm, RunProcessMergingAlgorithm, SauvolaLocalAutoThreshold2DAlgorithm, ScaleRoiAlgorithm, SeededWatershedSegmentationAlgorithm, SeparateLabelsAlgorithm, SeparateTouchingLabels2DAlgorithm, SetBioFormatsExporterSettings, SetFilamentMetadataToComponentIndexAlgorithm, SetImageMetadataFromTableAlgorithm, SetImpAlphaChannelAlgorithm, SetLUTFromColorMapAlgorithm, SetLUTFromColorsAlgorithm, SetLUTFromImageAlgorithm, SetOverlay3DAlgorithm, SetOverlayAlgorithm, SetOverlayFilamentsAlgorithm, SetPhysicalDimensionsAlgorithm, SetPhysicalDimensionsByAnnotationsAlgorithm, SetPhysicalDimensionsByExpressionsAlgorithm, SetROI3DMetadataFromTableAlgorithm, SetRoiImageAlgorithm, SetRoiMetadataByStatisticsAlgorithm, SetROIMetadataFromTableAlgorithm, SetSingleAnnotation, SetToColorAlgorithm, SetToContentAwareAlgorithm, SetToValueAlgorithm, SetVertexMetadataFromImageAlgorithm, SetVertexPhysicalSizeFromImageAlgorithm, SetVertexRadiusFromImageAlgorithm, SetVertexValueFromImageAlgorithm, SimpleFileAnnotationGenerator, SimpleFolderAnnotationGenerator, SimpleImageAndRoiIteratingAlgorithm, SimpleImageRegistrationAlgorithm, SimpleIteratingFormProcessorAlgorithm, SimpleIteratingJythonScriptAlgorithm, SimplePathAnnotationGenerator, SimplifyAnnotationsAlgorithm, SimplifyFilamentsAlgorithm, SingleIterationStepCheckerAlgorithm, SkeletonToFilaments2DAlgorithm, SkeletonToFilaments3DAlgorithm, SkeletonToSimplifiedFilamentsFijiAlgorithm, SliceROIListAlgorithm, SliceTableRowsAlgorithm, SmoothFilamentsAlgorithm, SobelEdgeDetectorAlgorithm, SortAndExtractRoiByStatisticsAlgorithm, SortAndExtractRoiByStatisticsAlgorithm2, SortRoiListByExpressionsAndMeasurementsAlgorithm, SortTableColumnsAlgorithm, SortTableRowsAlgorithm, SplitByAnnotationScript, SplitByDimensionAlgorithm, SplitChannelsAlgorithm, SplitChannelsByTableAlgorithm, SplitFilamentsIntoConnectedComponentsAlgorithm, SplitFilamentsIntoCyclesAlgorithm, SplitImpAlphaChannelAlgorithm, SplitLabelsConnectedComponents2DAlgorithm, SplitRGBChannelsAlgorithm, SplitRoi3DIntoConnectedComponentsAlgorithm, SplitRoiAlgorithm, SplitRoiConnectedComponentsAlgorithm, SplitSpotsNode, SplitTableByColumnsAlgorithm, SplitTableIntoColumnsAlgorithm, SplitTableIntoRowsAlgorithm, SplitTracksNode, SpotDetectorNode, SpotFilterNode, SpotSegmentation3DAlgorithm, SpotsToRGBNode, StackCombinerAlgorithm, StackInverterAlgorithm, StackSplitterAlgorithm, StackTo2DAlgorithm, StackToDimensionMerger2Algorithm, StackToDimensionMergerAlgorithm, StackToMontage2Algorithm, StackToMontageAlgorithm, StringDefinitionDataSource, StructureFeatureAlgorithm, SubdivideFilamentEdges, SymmetryFilter3DAlgorithm, TableColumnToImageAlgorithm, TableToCircularROIAlgorithm, TableToCSVTextAlgorithm, TableToHistogram2Algorithm, TableToHistogramAlgorithm, TableToImageAlgorithm, TableToLineROIAlgorithm, TableToPointROIAlgorithm, TableToRectangularROIAlgorithm, TableToTextROIAlgorithm, TesseractOCRAlgorithm, TextDataToTableAlgorithm, ThresholdByAnnotation2DAlgorithm, TileImage2DAlgorithm, TileImage2Dv2Algorithm, ToDataStringAlgorithm, ToHSBColorSpaceConverterAlgorithm, ToLABColorSpaceConverterAlgorithm, ToRGBColorSpaceConverterAlgorithm, TrackFilterNode, TrackingNode, TrackSchemeRendererNode, TracksToRGBNode, TransformCrop2DAlgorithm, TransformEqualCanvasSize2DAlgorithm, TransformEqualizeDimensionsAlgorithm, TransformEqualizeDimensionsToMaxAlgorithm, TransformExpandCanvas2DAlgorithm, TransformFlip2DAlgorithm, TransformRotate2DAlgorithm, TransformRotateFree2DAlgorithm, TransformScale2DAlgorithm, TransformScale3DAlgorithm, TransformSetHyperstackDimensionsAlgorithm, TSOAX2DAlgorithm, TSOAX3DAlgorithm, TSOAXAlgorithm, TSOAXResultAnalysisAlgorithm, TurboRegRegistration2DReferencedAlgorithm, TurboRegRegistration2DSingleAlgorithm, UltimateErodedPoints2DAlgorithm, UnMeltTableAlgorithm, UnreferencedRoiToMaskAlgorithm, UnreferencedRoiToRGBAlgorithm, UnsetRoiImageAlgorithm, UnTileImage2DAlgorithm, UploadOMEROImageToDatasetAlgorithm, UploadOMEROTableAlgorithm, URIListDataSource, UsePlaceholderForMissingDataAlgorithm, VolumeOpening2DAlgorithm, VolumeOpening3DAlgorithm, Voronoi2DAlgorithm, Voronoi3DAlgorithm, Warp2DAlgorithm, Watershed3DSegmentationAlgorithm, Watershed3DSplittingAlgorithm, WekaClassification2DAlgorithm, WekaClassification3DAlgorithm, WekaTrainingLabels2DAlgorithm, WekaTrainingLabels2DAlgorithm2, WekaTrainingMask2DAlgorithm, WekaTrainingMask2DAlgorithm2, WekaTrainingROI2DAlgorithm, WekaTrainingROI3DAlgorithm, ZProjectorAlgorithm

public interface JIPipeIterationStepAlgorithm

Methods shared across all JIPipeAlgorithm that generate iteration steps

Method Summary

Modifier and Type	Method and Description
default List<JIPipeMultiIterationStep>	generateDataBatchesDryRun(List<JIPipeInputDataSlot> slots, JIPipeProgressInfo progressInfo) Deprecated. use generateDataBatchesGenerationResult
JIPipeDataBatchGenerationResult	generateDataBatchesGenerationResult(List<JIPipeInputDataSlot> slots, JIPipeProgressInfo progressInfo) Generates iteration steps.
JIPipeIterationStepGenerationSettings	getGenerationSettingsInterface() Returns the batch generation settings as interface

Method Detail

getGenerationSettingsInterface

JIPipeIterationStepGenerationSettings getGenerationSettingsInterface()

Returns the batch generation settings as interface

Returns:

batch generation settings as interface

generateDataBatchesGenerationResult

JIPipeDataBatchGenerationResult generateDataBatchesGenerationResult(List<JIPipeInputDataSlot> slots,
                                                                    JIPipeProgressInfo progressInfo)

Generates iteration steps. This is a dry-run function that should never throw errors

Parameters:

slots - the data slots

progressInfo - the progress

Returns:

the batches

generateDataBatchesDryRun

@Deprecated
default List<JIPipeMultiIterationStep> generateDataBatchesDryRun(List<JIPipeInputDataSlot> slots,
                                                                             JIPipeProgressInfo progressInfo)

Deprecated. use generateDataBatchesGenerationResult

Generates iteration steps. This is a dry-run function that should never throw errors

Parameters:

slots - the data slots

progressInfo - the progress

Returns:

the batches