org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.modify

Class ChangeRoiPropertiesFromExpressionsAlgorithm

java.lang.Object

org.hkijena.jipipe.api.parameters.AbstractJIPipeParameterCollection

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.algorithm.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.api.nodes.algorithm.JIPipeIteratingAlgorithm

org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.modify.ChangeRoiPropertiesFromExpressionsAlgorithm

All Implemented Interfaces:

JIPipeSlotConfiguration.SlotConfigurationChangedEventListener, JIPipeFunctionallyComparable, JIPipeIterationStepAlgorithm, JIPipeAdaptiveParametersAlgorithm, JIPipeParallelizedAlgorithm, JIPipeParameterCollection, JIPipeParameterCollection.ParameterChangedEventListener, JIPipeParameterCollection.ParameterStructureChangedEventListener, JIPipeParameterCollection.ParameterUIChangedEventListener, JIPipeValidatable

public class ChangeRoiPropertiesFromExpressionsAlgorithm
extends JIPipeIteratingAlgorithm

Wrapper around RoiManager

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	ChangeRoiPropertiesFromExpressionsAlgorithm.VariablesInfo

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.BaseDirectoryChangedEventEmitter, JIPipeGraphNode.BaseDirectoryChangedEventListener, JIPipeGraphNode.NodeSlotsChangedEvent, JIPipeGraphNode.NodeSlotsChangedEventEmitter, JIPipeGraphNode.NodeSlotsChangedEventListener, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterChangedEventEmitter, JIPipeParameterCollection.ParameterChangedEventListener, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEventEmitter, JIPipeParameterCollection.ParameterStructureChangedEventListener, JIPipeParameterCollection.ParameterUIChangedEvent, JIPipeParameterCollection.ParameterUIChangedEventEmitter, JIPipeParameterCollection.ParameterUIChangedEventListener

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.algorithm.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
ChangeRoiPropertiesFromExpressionsAlgorithm(ChangeRoiPropertiesFromExpressionsAlgorithm other) Instantiates a new node type.
ChangeRoiPropertiesFromExpressionsAlgorithm(JIPipeNodeInfo info) Instantiates a new node type.

Method Summary

Modifier and Type	Method and Description
OptionalJIPipeExpressionParameter	getCenterScale()
OptionalJIPipeExpressionParameter	getFillColor()
OptionalJIPipeExpressionParameter	getLineColor()
OptionalJIPipeExpressionParameter	getLineWidth()
ImageStatisticsSetParameter	getMeasurements()
OptionalJIPipeExpressionParameter	getPositionC()
OptionalJIPipeExpressionParameter	getPositionT()
OptionalJIPipeExpressionParameter	getPositionX()
OptionalJIPipeExpressionParameter	getPositionY()
OptionalJIPipeExpressionParameter	getPositionZ()
OptionalJIPipeExpressionParameter	getRoiName()
OptionalJIPipeExpressionParameter	getScaleX()
OptionalJIPipeExpressionParameter	getScaleY()
boolean	isMeasureInPhysicalUnits()
void	run(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Runs the workload
protected void	runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Runs code on one data row
void	setCenterScale(OptionalJIPipeExpressionParameter centerScale)
void	setFillColor(OptionalJIPipeExpressionParameter fillColor)
void	setLineColor(OptionalJIPipeExpressionParameter lineColor)
void	setLineWidth(OptionalJIPipeExpressionParameter lineWidth)
void	setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	setMeasurements(ImageStatisticsSetParameter measurements)
void	setPositionC(OptionalJIPipeExpressionParameter positionC)
void	setPositionT(OptionalJIPipeExpressionParameter positionT)
void	setPositionX(OptionalJIPipeExpressionParameter positionX)
void	setPositionY(OptionalJIPipeExpressionParameter positionY)
void	setPositionZ(OptionalJIPipeExpressionParameter positionZ)
void	setRoiName(OptionalJIPipeExpressionParameter roiName)
void	setScaleX(OptionalJIPipeExpressionParameter scaleX)
void	setScaleY(OptionalJIPipeExpressionParameter scaleY)

Methods inherited from class org.hkijena.jipipe.api.nodes.algorithm.JIPipeIteratingAlgorithm

createUIInputSlotIconDescriptionMenuItems, generateDataBatchesGenerationResult, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getParallelizationBatchSize, isAllowEmptyIterationStep, isParameterUIVisible, isParameterUIVisible, runParameterSet, runPassThrough, supportsParallelization

Methods inherited from class org.hkijena.jipipe.api.nodes.algorithm.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, getUIInputSlotIcon, getUIInputSlotIconBaseDimensions, onParameterChanged

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, canPassThrough, functionallyEquals, getDefaultCustomExpressionVariables, getRuntimePartition, isEnabled, isEnableDefaultCustomExpressionVariables, isPassThrough, isPostprocessor, isPreprocessor, isSkipped, loadExample, onDeserialized, reportValidity, runPassThrough, setEnabled, setPassThrough, setRuntimePartition, setSkipped

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

archiveTo, canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, emitNodeSlotsChangedEvent, fromJson, getAliasIdInParentGraph, getBaseDirectory, getBaseDirectoryChangedEventEmitter, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getCustomName, getDependencies, getDisplayName, getEnvironmentDependencies, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getName, getNewScratch, getNodeSlotsChangedEventEmitter, getNodeUILocationPerViewModePerCompartment, getNodeUILocationWithin, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProject, getProjectCompartment, getProjectDataDirs, getProjectDirectory, getRuntimeProject, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getTextDescription, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isUiLocked, isVisibleIn, onSlotConfigurationChanged, renderInputSlots, renderOutputSlots, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setNodeUILocationPerViewModePerCompartment, setNodeUILocationWithin, setNodeUILocationWithin, setParentGraph, setProjectDirectory, setRuntimeProject, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, setUiLocked, toggleSlot, toJson, updateGraphNodeSlots

Methods inherited from class org.hkijena.jipipe.api.parameters.AbstractJIPipeParameterCollection

getParameterChangedEventEmitter, getParameterStructureChangedEventEmitter, getParameterUIChangedEventEmitter, onParameterStructureChanged, onParameterUIChanged, registerSubParameter, registerSubParameters

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.nodes.iterationstep.JIPipeIterationStepAlgorithm

generateDataBatchesDryRun

Methods inherited from interface org.hkijena.jipipe.api.nodes.JIPipeAdaptiveParametersAlgorithm

installUIOverrideParameterEditor, installUIParameterOptions

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

deserializeFromJsonNode, emitParameterChangedEvent, emitParameterStructureChangedEvent, emitParameterUIChangedEvent, getContextActions, getParameter, getParameterAccess, getParameterChangedEventEmitter, getParameterStructureChangedEventEmitter, getParameterUIChangedEventEmitter, serializeToJsonFile, serializeToJsonGenerator, serializeToJsonString, setParameter

Methods inherited from interface org.hkijena.jipipe.api.validation.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection.ParameterUIChangedEventListener

onParameterUIChanged

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection.ParameterStructureChangedEventListener

onParameterStructureChanged

Constructor Detail

ChangeRoiPropertiesFromExpressionsAlgorithm

public ChangeRoiPropertiesFromExpressionsAlgorithm(JIPipeNodeInfo info)

Instantiates a new node type.

Parameters:

info - the info

ChangeRoiPropertiesFromExpressionsAlgorithm

public ChangeRoiPropertiesFromExpressionsAlgorithm(ChangeRoiPropertiesFromExpressionsAlgorithm other)

Instantiates a new node type.

Parameters:

other - the other

Method Detail

run

public void run(JIPipeGraphNodeRunContext runContext,
                JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeGraphNode

Runs the workload

Overrides:

run in class JIPipeParameterSlotAlgorithm

Parameters:

runContext - the context of the run process

progressInfo - progress passed from the runner

runIteration

protected void runIteration(JIPipeSingleIterationStep iterationStep,
                            JIPipeIterationContext iterationContext,
                            JIPipeGraphNodeRunContext runContext,
                            JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeIteratingAlgorithm

Runs code on one data row

Specified by:

runIteration in class JIPipeIteratingAlgorithm

Parameters:

iterationStep - The data interface

iterationContext - The iteration context

runContext - the run context

progressInfo - the progress info from the run

getPositionX

public OptionalJIPipeExpressionParameter getPositionX()

setPositionX

public void setPositionX(OptionalJIPipeExpressionParameter positionX)

getPositionY

public OptionalJIPipeExpressionParameter getPositionY()

setPositionY

public void setPositionY(OptionalJIPipeExpressionParameter positionY)

getPositionZ

public OptionalJIPipeExpressionParameter getPositionZ()

setPositionZ

public void setPositionZ(OptionalJIPipeExpressionParameter positionZ)

getPositionC

public OptionalJIPipeExpressionParameter getPositionC()

setPositionC

public void setPositionC(OptionalJIPipeExpressionParameter positionC)

getPositionT

public OptionalJIPipeExpressionParameter getPositionT()

setPositionT

public void setPositionT(OptionalJIPipeExpressionParameter positionT)

getFillColor

public OptionalJIPipeExpressionParameter getFillColor()

setFillColor

public void setFillColor(OptionalJIPipeExpressionParameter fillColor)

getLineColor

public OptionalJIPipeExpressionParameter getLineColor()

setLineColor

public void setLineColor(OptionalJIPipeExpressionParameter lineColor)

getLineWidth

public OptionalJIPipeExpressionParameter getLineWidth()

setLineWidth

public void setLineWidth(OptionalJIPipeExpressionParameter lineWidth)

getRoiName

public OptionalJIPipeExpressionParameter getRoiName()

setRoiName

public void setRoiName(OptionalJIPipeExpressionParameter roiName)

getScaleX

public OptionalJIPipeExpressionParameter getScaleX()

setScaleX

public void setScaleX(OptionalJIPipeExpressionParameter scaleX)

getScaleY

public OptionalJIPipeExpressionParameter getScaleY()

setScaleY

public void setScaleY(OptionalJIPipeExpressionParameter scaleY)

getCenterScale

public OptionalJIPipeExpressionParameter getCenterScale()

setCenterScale

public void setCenterScale(OptionalJIPipeExpressionParameter centerScale)

getMeasurements

public ImageStatisticsSetParameter getMeasurements()

setMeasurements

public void setMeasurements(ImageStatisticsSetParameter measurements)

isMeasureInPhysicalUnits

public boolean isMeasureInPhysicalUnits()

setMeasureInPhysicalUnits

public void setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)