org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.modify

Class ChangeRoiPropertiesFromAnnotationsAlgorithm

java.lang.Object

org.hkijena.jipipe.api.parameters.AbstractJIPipeParameterCollection

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.algorithm.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.api.nodes.algorithm.JIPipeSimpleIteratingAlgorithm

org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.modify.ChangeRoiPropertiesFromAnnotationsAlgorithm

All Implemented Interfaces:

JIPipeSlotConfiguration.SlotConfigurationChangedEventListener, JIPipeFunctionallyComparable, JIPipeIterationStepAlgorithm, JIPipeAdaptiveParametersAlgorithm, JIPipeParallelizedAlgorithm, JIPipeParameterCollection, JIPipeParameterCollection.ParameterChangedEventListener, JIPipeParameterCollection.ParameterStructureChangedEventListener, JIPipeParameterCollection.ParameterUIChangedEventListener, JIPipeValidatable

public class ChangeRoiPropertiesFromAnnotationsAlgorithm
extends JIPipeSimpleIteratingAlgorithm

Wrapper around RoiManager

Nested Class Summary

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.BaseDirectoryChangedEventEmitter, JIPipeGraphNode.BaseDirectoryChangedEventListener, JIPipeGraphNode.NodeSlotsChangedEvent, JIPipeGraphNode.NodeSlotsChangedEventEmitter, JIPipeGraphNode.NodeSlotsChangedEventListener, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterChangedEventEmitter, JIPipeParameterCollection.ParameterChangedEventListener, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEventEmitter, JIPipeParameterCollection.ParameterStructureChangedEventListener, JIPipeParameterCollection.ParameterUIChangedEvent, JIPipeParameterCollection.ParameterUIChangedEventEmitter, JIPipeParameterCollection.ParameterUIChangedEventListener

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.algorithm.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
ChangeRoiPropertiesFromAnnotationsAlgorithm(ChangeRoiPropertiesFromAnnotationsAlgorithm other) Instantiates a new node type.
ChangeRoiPropertiesFromAnnotationsAlgorithm(JIPipeNodeInfo info) Instantiates a new node type.

Method Summary

Modifier and Type	Method and Description
OptionalTextAnnotationNameParameter	getCenterScale()
OptionalTextAnnotationNameParameter	getFillColor()
OptionalTextAnnotationNameParameter	getLineColor()
OptionalTextAnnotationNameParameter	getLineWidth()
OptionalTextAnnotationNameParameter	getPositionC()
OptionalTextAnnotationNameParameter	getPositionT()
OptionalTextAnnotationNameParameter	getPositionX()
OptionalTextAnnotationNameParameter	getPositionY()
OptionalTextAnnotationNameParameter	getPositionZ()
OptionalTextAnnotationNameParameter	getRoiName()
OptionalTextAnnotationNameParameter	getScaleX()
OptionalTextAnnotationNameParameter	getScaleY()
protected void	runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Runs code on one data row
void	setCenterScale(OptionalTextAnnotationNameParameter centerScale)
void	setFillColor(OptionalTextAnnotationNameParameter fillColor)
void	setLineColor(OptionalTextAnnotationNameParameter lineColor)
void	setLineWidth(OptionalTextAnnotationNameParameter lineWidth)
void	setPositionC(OptionalTextAnnotationNameParameter positionC)
void	setPositionT(OptionalTextAnnotationNameParameter positionT)
void	setPositionX(OptionalTextAnnotationNameParameter positionX)
void	setPositionY(OptionalTextAnnotationNameParameter positionY)
void	setPositionZ(OptionalTextAnnotationNameParameter positionZ)
void	setRoiName(OptionalTextAnnotationNameParameter roiName)
void	setScaleX(OptionalTextAnnotationNameParameter scaleX)
void	setScaleY(OptionalTextAnnotationNameParameter scaleY)

Methods inherited from class org.hkijena.jipipe.api.nodes.algorithm.JIPipeSimpleIteratingAlgorithm

createUIInputSlotIconDescriptionMenuItems, generateDataBatchesGenerationResult, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getParallelizationBatchSize, isAllowEmptyIterationStep, isParameterUIVisible, isParameterUIVisible, reportValidity, runParameterSet, runPassThrough, supportsParallelization

Methods inherited from class org.hkijena.jipipe.api.nodes.algorithm.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, getUIInputSlotIcon, getUIInputSlotIconBaseDimensions, onParameterChanged, run

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, canPassThrough, functionallyEquals, getDefaultCustomExpressionVariables, getRuntimePartition, isEnabled, isEnableDefaultCustomExpressionVariables, isPassThrough, isPostprocessor, isPreprocessor, isSkipped, loadExample, onDeserialized, runPassThrough, setEnabled, setPassThrough, setRuntimePartition, setSkipped

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

archiveTo, canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, emitNodeSlotsChangedEvent, fromJson, getAliasIdInParentGraph, getBaseDirectory, getBaseDirectoryChangedEventEmitter, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getCustomName, getDependencies, getDisplayName, getEnvironmentDependencies, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getName, getNewScratch, getNodeSlotsChangedEventEmitter, getNodeUILocationPerViewModePerCompartment, getNodeUILocationWithin, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProject, getProjectCompartment, getProjectDataDirs, getProjectDirectory, getRuntimeProject, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getTextDescription, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isUiLocked, isVisibleIn, onSlotConfigurationChanged, renderInputSlots, renderOutputSlots, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setNodeUILocationPerViewModePerCompartment, setNodeUILocationWithin, setNodeUILocationWithin, setParentGraph, setProjectDirectory, setRuntimeProject, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, setUiLocked, toggleSlot, toJson, updateGraphNodeSlots

Methods inherited from class org.hkijena.jipipe.api.parameters.AbstractJIPipeParameterCollection

getParameterChangedEventEmitter, getParameterStructureChangedEventEmitter, getParameterUIChangedEventEmitter, onParameterStructureChanged, onParameterUIChanged, registerSubParameter, registerSubParameters

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.nodes.iterationstep.JIPipeIterationStepAlgorithm

generateDataBatchesDryRun

Methods inherited from interface org.hkijena.jipipe.api.nodes.JIPipeAdaptiveParametersAlgorithm

installUIOverrideParameterEditor, installUIParameterOptions

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

deserializeFromJsonNode, emitParameterChangedEvent, emitParameterStructureChangedEvent, emitParameterUIChangedEvent, getContextActions, getParameter, getParameterAccess, getParameterChangedEventEmitter, getParameterStructureChangedEventEmitter, getParameterUIChangedEventEmitter, serializeToJsonFile, serializeToJsonGenerator, serializeToJsonString, setParameter

Methods inherited from interface org.hkijena.jipipe.api.validation.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection.ParameterUIChangedEventListener

onParameterUIChanged

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection.ParameterStructureChangedEventListener

onParameterStructureChanged

Constructor Detail

ChangeRoiPropertiesFromAnnotationsAlgorithm

public ChangeRoiPropertiesFromAnnotationsAlgorithm(JIPipeNodeInfo info)

Instantiates a new node type.

Parameters:

info - the info

ChangeRoiPropertiesFromAnnotationsAlgorithm

public ChangeRoiPropertiesFromAnnotationsAlgorithm(ChangeRoiPropertiesFromAnnotationsAlgorithm other)

Instantiates a new node type.

Parameters:

other - the other

Method Detail

runIteration

protected void runIteration(JIPipeSingleIterationStep iterationStep,
                            JIPipeIterationContext iterationContext,
                            JIPipeGraphNodeRunContext runContext,
                            JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeSimpleIteratingAlgorithm

Runs code on one data row

Specified by:

runIteration in class JIPipeSimpleIteratingAlgorithm

Parameters:

iterationStep - The data interface

iterationContext - the iteration context

runContext - the run context

progressInfo - the progress info from the run

getPositionX

public OptionalTextAnnotationNameParameter getPositionX()

setPositionX

public void setPositionX(OptionalTextAnnotationNameParameter positionX)

getPositionY

public OptionalTextAnnotationNameParameter getPositionY()

setPositionY

public void setPositionY(OptionalTextAnnotationNameParameter positionY)

getPositionZ

public OptionalTextAnnotationNameParameter getPositionZ()

setPositionZ

public void setPositionZ(OptionalTextAnnotationNameParameter positionZ)

getPositionC

public OptionalTextAnnotationNameParameter getPositionC()

setPositionC

public void setPositionC(OptionalTextAnnotationNameParameter positionC)

getPositionT

public OptionalTextAnnotationNameParameter getPositionT()

setPositionT

public void setPositionT(OptionalTextAnnotationNameParameter positionT)

getFillColor

public OptionalTextAnnotationNameParameter getFillColor()

setFillColor

public void setFillColor(OptionalTextAnnotationNameParameter fillColor)

getLineColor

public OptionalTextAnnotationNameParameter getLineColor()

setLineColor

public void setLineColor(OptionalTextAnnotationNameParameter lineColor)

getLineWidth

public OptionalTextAnnotationNameParameter getLineWidth()

setLineWidth

public void setLineWidth(OptionalTextAnnotationNameParameter lineWidth)

getRoiName

public OptionalTextAnnotationNameParameter getRoiName()

setRoiName

public void setRoiName(OptionalTextAnnotationNameParameter roiName)

getScaleX

public OptionalTextAnnotationNameParameter getScaleX()

setScaleX

public void setScaleX(OptionalTextAnnotationNameParameter scaleX)

getScaleY

public OptionalTextAnnotationNameParameter getScaleY()

setScaleY

public void setScaleY(OptionalTextAnnotationNameParameter scaleY)

getCenterScale

public OptionalTextAnnotationNameParameter getCenterScale()

setCenterScale

public void setCenterScale(OptionalTextAnnotationNameParameter centerScale)