org.hkijena.jipipe.plugins.imagejalgorithms.nodes.forms

Class DrawROIAlgorithm

java.lang.Object

org.hkijena.jipipe.api.parameters.AbstractJIPipeParameterCollection

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.algorithm.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.api.nodes.algorithm.JIPipeIteratingMissingDataGeneratorAlgorithm

org.hkijena.jipipe.plugins.imagejalgorithms.nodes.forms.DrawROIAlgorithm

All Implemented Interfaces:

JIPipeSlotConfiguration.SlotConfigurationChangedEventListener, JIPipeFunctionallyComparable, JIPipeIterationStepAlgorithm, JIPipeParallelizedAlgorithm, JIPipeParameterCollection, JIPipeParameterCollection.ParameterChangedEventListener, JIPipeParameterCollection.ParameterStructureChangedEventListener, JIPipeParameterCollection.ParameterUIChangedEventListener, JIPipeValidatable

public class DrawROIAlgorithm
extends JIPipeIteratingMissingDataGeneratorAlgorithm

Nested Class Summary

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.BaseDirectoryChangedEventEmitter, JIPipeGraphNode.BaseDirectoryChangedEventListener, JIPipeGraphNode.NodeSlotsChangedEvent, JIPipeGraphNode.NodeSlotsChangedEventEmitter, JIPipeGraphNode.NodeSlotsChangedEventListener, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterChangedEventEmitter, JIPipeParameterCollection.ParameterChangedEventListener, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEventEmitter, JIPipeParameterCollection.ParameterStructureChangedEventListener, JIPipeParameterCollection.ParameterUIChangedEvent, JIPipeParameterCollection.ParameterUIChangedEventEmitter, JIPipeParameterCollection.ParameterUIChangedEventListener

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.algorithm.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
DrawROIAlgorithm(DrawROIAlgorithm other)
DrawROIAlgorithm(JIPipeNodeInfo info)

Method Summary

Modifier and Type	Method and Description
boolean	canPassThrough() Returns true if the algorithm can apply pass-through.
OptionalIntegerParameter	getOverwriteSizeC()
OptionalIntegerParameter	getOverwriteSizeT()
OptionalIntegerParameter	getOverwriteSizeZ()
protected void	runGenerator(JIPipeMultiIterationStep iterationStep, JIPipeInputDataSlot inputSlot, JIPipeOutputDataSlot outputSlot, JIPipeProgressInfo progressInfo) Generates data and puts the output into the specified output slot
void	runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations) Runs a parameter set iteration
void	setOverwriteSizeC(OptionalIntegerParameter overwriteSizeC)
void	setOverwriteSizeT(OptionalIntegerParameter overwriteSizeT)
void	setOverwriteSizeZ(OptionalIntegerParameter overwriteSizeZ)
boolean	supportsParallelization() Indicates to the algorithm base implementation if parallelization is supported.

Methods inherited from class org.hkijena.jipipe.api.nodes.algorithm.JIPipeIteratingMissingDataGeneratorAlgorithm

generateDataBatchesGenerationResult, getCorrespondingOutputSlot, getDataBatchGenerationSettings, getGenerationSettingsInterface, getParallelizationBatchSize, isKeepOriginalAnnotations, isParameterUIVisible, isParameterUIVisible, runIteration, setKeepOriginalAnnotations

Methods inherited from class org.hkijena.jipipe.api.nodes.algorithm.JIPipeParameterSlotAlgorithm

createUIInputSlotIconDescriptionMenuItems, getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, getUIInputSlotIcon, getUIInputSlotIconBaseDimensions, onParameterChanged, run

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, functionallyEquals, getDefaultCustomExpressionVariables, getRuntimePartition, isEnabled, isEnableDefaultCustomExpressionVariables, isPassThrough, isPostprocessor, isPreprocessor, isSkipped, loadExample, onDeserialized, reportValidity, runPassThrough, setEnabled, setPassThrough, setRuntimePartition, setSkipped

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

archiveTo, canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, emitNodeSlotsChangedEvent, fromJson, getAliasIdInParentGraph, getBaseDirectory, getBaseDirectoryChangedEventEmitter, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getCustomName, getDependencies, getDisplayName, getEnvironmentDependencies, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getName, getNewScratch, getNodeSlotsChangedEventEmitter, getNodeUILocationPerViewModePerCompartment, getNodeUILocationWithin, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProject, getProjectCompartment, getProjectDataDirs, getProjectDirectory, getRuntimeProject, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getTextDescription, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isUiLocked, isVisibleIn, onSlotConfigurationChanged, renderInputSlots, renderOutputSlots, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setNodeUILocationPerViewModePerCompartment, setNodeUILocationWithin, setNodeUILocationWithin, setParentGraph, setProjectDirectory, setRuntimeProject, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, setUiLocked, toggleSlot, toJson, updateGraphNodeSlots

Methods inherited from class org.hkijena.jipipe.api.parameters.AbstractJIPipeParameterCollection

getParameterChangedEventEmitter, getParameterStructureChangedEventEmitter, getParameterUIChangedEventEmitter, onParameterStructureChanged, onParameterUIChanged, registerSubParameter, registerSubParameters

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.nodes.iterationstep.JIPipeIterationStepAlgorithm

generateDataBatchesDryRun

Methods inherited from interface org.hkijena.jipipe.api.validation.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection.ParameterUIChangedEventListener

onParameterUIChanged

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection.ParameterStructureChangedEventListener

onParameterStructureChanged

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

deserializeFromJsonNode, emitParameterChangedEvent, emitParameterStructureChangedEvent, emitParameterUIChangedEvent, getContextActions, getParameter, getParameterAccess, installUIOverrideParameterEditor, installUIParameterOptions, serializeToJsonFile, serializeToJsonGenerator, serializeToJsonString, setParameter

Constructor Detail

DrawROIAlgorithm

public DrawROIAlgorithm(JIPipeNodeInfo info)

DrawROIAlgorithm

public DrawROIAlgorithm(DrawROIAlgorithm other)

Method Detail

runParameterSet

public void runParameterSet(JIPipeGraphNodeRunContext runContext,
                            JIPipeProgressInfo progressInfo,
                            List<JIPipeTextAnnotation> parameterAnnotations)

Description copied from class: JIPipeParameterSlotAlgorithm

Runs a parameter set iteration

Overrides:

runParameterSet in class JIPipeIteratingMissingDataGeneratorAlgorithm

Parameters:

runContext - the run context

progressInfo - progress info from the run

parameterAnnotations - parameter annotations

supportsParallelization

public boolean supportsParallelization()

Description copied from interface: JIPipeParallelizedAlgorithm

Indicates to the algorithm base implementation if parallelization is supported. Use this function to indicate to the algorithm to conditionally enable/disable parallelization.

Specified by:

supportsParallelization in interface JIPipeParallelizedAlgorithm

Overrides:

supportsParallelization in class JIPipeIteratingMissingDataGeneratorAlgorithm

Returns:

If the algorithm supports automated parallelization.

canPassThrough

public boolean canPassThrough()

Description copied from class: JIPipeAlgorithm

Returns true if the algorithm can apply pass-through. Override this method to implement your own checks

Overrides:

canPassThrough in class JIPipeAlgorithm

Returns:

true if the algorithm can apply pass-through

runGenerator

protected void runGenerator(JIPipeMultiIterationStep iterationStep,
                            JIPipeInputDataSlot inputSlot,
                            JIPipeOutputDataSlot outputSlot,
                            JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeIteratingMissingDataGeneratorAlgorithm

Generates data and puts the output into the specified output slot

Specified by:

runGenerator in class JIPipeIteratingMissingDataGeneratorAlgorithm

Parameters:

iterationStep - the iteration step

inputSlot - the input slot that should be generated. Please note that it does not contain any data for this batch.

outputSlot - the output slot where data should be put.

progressInfo - the progress info

getOverwriteSizeZ

public OptionalIntegerParameter getOverwriteSizeZ()

setOverwriteSizeZ

public void setOverwriteSizeZ(OptionalIntegerParameter overwriteSizeZ)

getOverwriteSizeC

public OptionalIntegerParameter getOverwriteSizeC()

setOverwriteSizeC

public void setOverwriteSizeC(OptionalIntegerParameter overwriteSizeC)

getOverwriteSizeT

public OptionalIntegerParameter getOverwriteSizeT()

setOverwriteSizeT

public void setOverwriteSizeT(OptionalIntegerParameter overwriteSizeT)