org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.split

Class SplitRoiConnectedComponentsAlgorithm

java.lang.Object

org.hkijena.jipipe.api.parameters.AbstractJIPipeParameterCollection

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.algorithm.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.api.nodes.algorithm.JIPipeIteratingAlgorithm

org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.split.SplitRoiConnectedComponentsAlgorithm

All Implemented Interfaces:

JIPipeSlotConfiguration.SlotConfigurationChangedEventListener, JIPipeFunctionallyComparable, JIPipeIterationStepAlgorithm, JIPipeAdaptiveParametersAlgorithm, JIPipeParallelizedAlgorithm, JIPipeParameterCollection, JIPipeParameterCollection.ParameterChangedEventListener, JIPipeParameterCollection.ParameterStructureChangedEventListener, JIPipeParameterCollection.ParameterUIChangedEventListener, JIPipeValidatable

public class SplitRoiConnectedComponentsAlgorithm
extends JIPipeIteratingAlgorithm

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	SplitRoiConnectedComponentsAlgorithm.DimensionOperation
static class	SplitRoiConnectedComponentsAlgorithm.GraphPostprocessingVariables

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.BaseDirectoryChangedEventEmitter, JIPipeGraphNode.BaseDirectoryChangedEventListener, JIPipeGraphNode.NodeSlotsChangedEvent, JIPipeGraphNode.NodeSlotsChangedEventEmitter, JIPipeGraphNode.NodeSlotsChangedEventListener, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterChangedEventEmitter, JIPipeParameterCollection.ParameterChangedEventListener, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEventEmitter, JIPipeParameterCollection.ParameterStructureChangedEventListener, JIPipeParameterCollection.ParameterUIChangedEvent, JIPipeParameterCollection.ParameterUIChangedEventEmitter, JIPipeParameterCollection.ParameterUIChangedEventListener

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.algorithm.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
SplitRoiConnectedComponentsAlgorithm(JIPipeNodeInfo info)
SplitRoiConnectedComponentsAlgorithm(SplitRoiConnectedComponentsAlgorithm other)

Method Summary

Modifier and Type	Method and Description
OptionalTextAnnotationNameParameter	getComponentNameAnnotation()
SplitRoiConnectedComponentsAlgorithm.DimensionOperation	getDimensionCOperation()
SplitRoiConnectedComponentsAlgorithm.DimensionOperation	getDimensionTOperation()
SplitRoiConnectedComponentsAlgorithm.DimensionOperation	getDimensionZOperation()
JIPipeExpressionParameter	getGraphPostprocessing()
JIPipeExpressionParameter	getOverlapFilter()
ImageStatisticsSetParameter	getOverlapFilterMeasurements()
boolean	isMeasureInPhysicalUnits()
boolean	isSplitAtJunctions()
boolean	isTrySolveJunctions()
protected void	runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Runs code on one data row
void	setComponentNameAnnotation(OptionalTextAnnotationNameParameter componentNameAnnotation)
void	setDimensionCOperation(SplitRoiConnectedComponentsAlgorithm.DimensionOperation dimensionCOperation)
void	setDimensionTOperation(SplitRoiConnectedComponentsAlgorithm.DimensionOperation dimensionTOperation)
void	setDimensionZOperation(SplitRoiConnectedComponentsAlgorithm.DimensionOperation dimensionZOperation)
void	setGraphPostprocessing(JIPipeExpressionParameter graphPostprocessing)
void	setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	setOverlapFilter(JIPipeExpressionParameter overlapFilter)
void	setOverlapFilterMeasurements(ImageStatisticsSetParameter overlapFilterMeasurements)
void	setSplitAtJunctions(boolean splitAtJunctions)
void	setTrySolveJunctions(boolean trySolveJunctions)

Methods inherited from class org.hkijena.jipipe.api.nodes.algorithm.JIPipeIteratingAlgorithm

createUIInputSlotIconDescriptionMenuItems, generateDataBatchesGenerationResult, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getParallelizationBatchSize, isAllowEmptyIterationStep, isParameterUIVisible, isParameterUIVisible, runParameterSet, runPassThrough, supportsParallelization

Methods inherited from class org.hkijena.jipipe.api.nodes.algorithm.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, getUIInputSlotIcon, getUIInputSlotIconBaseDimensions, onParameterChanged, run

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, canPassThrough, functionallyEquals, getDefaultCustomExpressionVariables, getRuntimePartition, isEnabled, isEnableDefaultCustomExpressionVariables, isPassThrough, isPostprocessor, isPreprocessor, isSkipped, loadExample, onDeserialized, reportValidity, runPassThrough, setEnabled, setPassThrough, setRuntimePartition, setSkipped

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

archiveTo, canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, emitNodeSlotsChangedEvent, fromJson, getAliasIdInParentGraph, getBaseDirectory, getBaseDirectoryChangedEventEmitter, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getCustomName, getDependencies, getDisplayName, getEnvironmentDependencies, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getName, getNewScratch, getNodeSlotsChangedEventEmitter, getNodeUILocationPerViewModePerCompartment, getNodeUILocationWithin, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProject, getProjectCompartment, getProjectDataDirs, getProjectDirectory, getRuntimeProject, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getTextDescription, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isUiLocked, isVisibleIn, onSlotConfigurationChanged, renderInputSlots, renderOutputSlots, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setNodeUILocationPerViewModePerCompartment, setNodeUILocationWithin, setNodeUILocationWithin, setParentGraph, setProjectDirectory, setRuntimeProject, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, setUiLocked, toggleSlot, toJson, updateGraphNodeSlots

Methods inherited from class org.hkijena.jipipe.api.parameters.AbstractJIPipeParameterCollection

getParameterChangedEventEmitter, getParameterStructureChangedEventEmitter, getParameterUIChangedEventEmitter, onParameterStructureChanged, onParameterUIChanged, registerSubParameter, registerSubParameters

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.nodes.iterationstep.JIPipeIterationStepAlgorithm

generateDataBatchesDryRun

Methods inherited from interface org.hkijena.jipipe.api.nodes.JIPipeAdaptiveParametersAlgorithm

installUIOverrideParameterEditor, installUIParameterOptions

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

deserializeFromJsonNode, emitParameterChangedEvent, emitParameterStructureChangedEvent, emitParameterUIChangedEvent, getContextActions, getParameter, getParameterAccess, getParameterChangedEventEmitter, getParameterStructureChangedEventEmitter, getParameterUIChangedEventEmitter, serializeToJsonFile, serializeToJsonGenerator, serializeToJsonString, setParameter

Methods inherited from interface org.hkijena.jipipe.api.validation.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection.ParameterUIChangedEventListener

onParameterUIChanged

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection.ParameterStructureChangedEventListener

onParameterStructureChanged

Constructor Detail

SplitRoiConnectedComponentsAlgorithm

public SplitRoiConnectedComponentsAlgorithm(JIPipeNodeInfo info)

SplitRoiConnectedComponentsAlgorithm

public SplitRoiConnectedComponentsAlgorithm(SplitRoiConnectedComponentsAlgorithm other)

Method Detail

runIteration

protected void runIteration(JIPipeSingleIterationStep iterationStep,
                            JIPipeIterationContext iterationContext,
                            JIPipeGraphNodeRunContext runContext,
                            JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeIteratingAlgorithm

Runs code on one data row

Specified by:

runIteration in class JIPipeIteratingAlgorithm

Parameters:

iterationStep - The data interface

iterationContext - The iteration context

runContext - the run context

progressInfo - the progress info from the run

getGraphPostprocessing

public JIPipeExpressionParameter getGraphPostprocessing()

setGraphPostprocessing

public void setGraphPostprocessing(JIPipeExpressionParameter graphPostprocessing)

getDimensionZOperation

public SplitRoiConnectedComponentsAlgorithm.DimensionOperation getDimensionZOperation()

setDimensionZOperation

public void setDimensionZOperation(SplitRoiConnectedComponentsAlgorithm.DimensionOperation dimensionZOperation)

getDimensionCOperation

public SplitRoiConnectedComponentsAlgorithm.DimensionOperation getDimensionCOperation()

setDimensionCOperation

public void setDimensionCOperation(SplitRoiConnectedComponentsAlgorithm.DimensionOperation dimensionCOperation)

getDimensionTOperation

public SplitRoiConnectedComponentsAlgorithm.DimensionOperation getDimensionTOperation()

setDimensionTOperation

public void setDimensionTOperation(SplitRoiConnectedComponentsAlgorithm.DimensionOperation dimensionTOperation)

getComponentNameAnnotation

public OptionalTextAnnotationNameParameter getComponentNameAnnotation()

setComponentNameAnnotation

public void setComponentNameAnnotation(OptionalTextAnnotationNameParameter componentNameAnnotation)

getOverlapFilter

public JIPipeExpressionParameter getOverlapFilter()

setOverlapFilter

public void setOverlapFilter(JIPipeExpressionParameter overlapFilter)

getOverlapFilterMeasurements

public ImageStatisticsSetParameter getOverlapFilterMeasurements()

setOverlapFilterMeasurements

public void setOverlapFilterMeasurements(ImageStatisticsSetParameter overlapFilterMeasurements)

isSplitAtJunctions

public boolean isSplitAtJunctions()

setSplitAtJunctions

public void setSplitAtJunctions(boolean splitAtJunctions)

isTrySolveJunctions

public boolean isTrySolveJunctions()

setTrySolveJunctions

public void setTrySolveJunctions(boolean trySolveJunctions)

isMeasureInPhysicalUnits

public boolean isMeasureInPhysicalUnits()

setMeasureInPhysicalUnits

public void setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)