org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.annotations

Class RoiPropertiesToAnnotationsAlgorithm

java.lang.Object

org.hkijena.jipipe.api.parameters.AbstractJIPipeParameterCollection

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.algorithm.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.api.nodes.algorithm.JIPipeSimpleIteratingAlgorithm

org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.annotations.RoiPropertiesToAnnotationsAlgorithm

All Implemented Interfaces:

JIPipeSlotConfiguration.SlotConfigurationChangedEventListener, JIPipeFunctionallyComparable, JIPipeIterationStepAlgorithm, JIPipeAdaptiveParametersAlgorithm, JIPipeParallelizedAlgorithm, JIPipeParameterCollection, JIPipeParameterCollection.ParameterChangedEventListener, JIPipeParameterCollection.ParameterStructureChangedEventListener, JIPipeParameterCollection.ParameterUIChangedEventListener, JIPipeValidatable

public class RoiPropertiesToAnnotationsAlgorithm
extends JIPipeSimpleIteratingAlgorithm

Nested Class Summary

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.BaseDirectoryChangedEventEmitter, JIPipeGraphNode.BaseDirectoryChangedEventListener, JIPipeGraphNode.NodeSlotsChangedEvent, JIPipeGraphNode.NodeSlotsChangedEventEmitter, JIPipeGraphNode.NodeSlotsChangedEventListener, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterChangedEventEmitter, JIPipeParameterCollection.ParameterChangedEventListener, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEventEmitter, JIPipeParameterCollection.ParameterStructureChangedEventListener, JIPipeParameterCollection.ParameterUIChangedEvent, JIPipeParameterCollection.ParameterUIChangedEventEmitter, JIPipeParameterCollection.ParameterUIChangedEventListener

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.algorithm.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
RoiPropertiesToAnnotationsAlgorithm(JIPipeNodeInfo info)
RoiPropertiesToAnnotationsAlgorithm(RoiPropertiesToAnnotationsAlgorithm other)

Method Summary

Modifier and Type	Method and Description
JIPipeTextAnnotationMergeMode	getAnnotationMergeStrategy()
OptionalTextAnnotationNameParameter	getCountAnnotation()
OptionalTextAnnotationNameParameter	getFillColorAnnotation()
OptionalTextAnnotationNameParameter	getLineColorAnnotation()
OptionalTextAnnotationNameParameter	getLineWidthAnnotation()
OptionalTextAnnotationNameParameter	getLocationCAnnotation()
OptionalTextAnnotationNameParameter	getLocationTAnnotation()
OptionalTextAnnotationNameParameter	getLocationXAnnotation()
OptionalTextAnnotationNameParameter	getLocationYAnnotation()
OptionalTextAnnotationNameParameter	getLocationZAnnotation()
OptionalTextAnnotationNameParameter	getNameAnnotation()
boolean	isDeduplicate()
boolean	isOnlyFirst()
protected void	runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Runs code on one data row
void	setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	setCountAnnotation(OptionalTextAnnotationNameParameter countAnnotation)
void	setDeduplicate(boolean deduplicate)
void	setFillColorAnnotation(OptionalTextAnnotationNameParameter fillColorAnnotation)
void	setLineColorAnnotation(OptionalTextAnnotationNameParameter lineColorAnnotation)
void	setLineWidthAnnotation(OptionalTextAnnotationNameParameter lineWidthAnnotation)
void	setLocationCAnnotation(OptionalTextAnnotationNameParameter locationCAnnotation)
void	setLocationTAnnotation(OptionalTextAnnotationNameParameter locationTAnnotation)
void	setLocationXAnnotation(OptionalTextAnnotationNameParameter locationXAnnotation)
void	setLocationYAnnotation(OptionalTextAnnotationNameParameter locationYAnnotation)
void	setLocationZAnnotation(OptionalTextAnnotationNameParameter locationZAnnotation)
void	setNameAnnotation(OptionalTextAnnotationNameParameter nameAnnotation)
void	setOnlyFirst(boolean onlyFirst)

Methods inherited from class org.hkijena.jipipe.api.nodes.algorithm.JIPipeSimpleIteratingAlgorithm

createUIInputSlotIconDescriptionMenuItems, generateDataBatchesGenerationResult, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getParallelizationBatchSize, isAllowEmptyIterationStep, isParameterUIVisible, isParameterUIVisible, reportValidity, runParameterSet, runPassThrough, supportsParallelization

Methods inherited from class org.hkijena.jipipe.api.nodes.algorithm.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, getUIInputSlotIcon, getUIInputSlotIconBaseDimensions, onParameterChanged, run

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, canPassThrough, functionallyEquals, getDefaultCustomExpressionVariables, getRuntimePartition, isEnabled, isEnableDefaultCustomExpressionVariables, isPassThrough, isPostprocessor, isPreprocessor, isSkipped, loadExample, onDeserialized, runPassThrough, setEnabled, setPassThrough, setRuntimePartition, setSkipped

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

archiveTo, canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, emitNodeSlotsChangedEvent, fromJson, getAliasIdInParentGraph, getBaseDirectory, getBaseDirectoryChangedEventEmitter, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getCustomName, getDependencies, getDisplayName, getEnvironmentDependencies, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getName, getNewScratch, getNodeSlotsChangedEventEmitter, getNodeUILocationPerViewModePerCompartment, getNodeUILocationWithin, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProject, getProjectCompartment, getProjectDataDirs, getProjectDirectory, getRuntimeProject, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getTextDescription, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isUiLocked, isVisibleIn, onSlotConfigurationChanged, renderInputSlots, renderOutputSlots, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setNodeUILocationPerViewModePerCompartment, setNodeUILocationWithin, setNodeUILocationWithin, setParentGraph, setProjectDirectory, setRuntimeProject, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, setUiLocked, toggleSlot, toJson, updateGraphNodeSlots

Methods inherited from class org.hkijena.jipipe.api.parameters.AbstractJIPipeParameterCollection

getParameterChangedEventEmitter, getParameterStructureChangedEventEmitter, getParameterUIChangedEventEmitter, onParameterStructureChanged, onParameterUIChanged, registerSubParameter, registerSubParameters

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.nodes.iterationstep.JIPipeIterationStepAlgorithm

generateDataBatchesDryRun

Methods inherited from interface org.hkijena.jipipe.api.nodes.JIPipeAdaptiveParametersAlgorithm

installUIOverrideParameterEditor, installUIParameterOptions

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

deserializeFromJsonNode, emitParameterChangedEvent, emitParameterStructureChangedEvent, emitParameterUIChangedEvent, getContextActions, getParameter, getParameterAccess, getParameterChangedEventEmitter, getParameterStructureChangedEventEmitter, getParameterUIChangedEventEmitter, serializeToJsonFile, serializeToJsonGenerator, serializeToJsonString, setParameter

Methods inherited from interface org.hkijena.jipipe.api.validation.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection.ParameterUIChangedEventListener

onParameterUIChanged

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection.ParameterStructureChangedEventListener

onParameterStructureChanged

Constructor Detail

RoiPropertiesToAnnotationsAlgorithm

public RoiPropertiesToAnnotationsAlgorithm(JIPipeNodeInfo info)

RoiPropertiesToAnnotationsAlgorithm

public RoiPropertiesToAnnotationsAlgorithm(RoiPropertiesToAnnotationsAlgorithm other)

Method Detail

runIteration

protected void runIteration(JIPipeSingleIterationStep iterationStep,
                            JIPipeIterationContext iterationContext,
                            JIPipeGraphNodeRunContext runContext,
                            JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeSimpleIteratingAlgorithm

Runs code on one data row

Specified by:

runIteration in class JIPipeSimpleIteratingAlgorithm

Parameters:

iterationStep - The data interface

iterationContext - the iteration context

runContext - the run context

progressInfo - the progress info from the run

getCountAnnotation

public OptionalTextAnnotationNameParameter getCountAnnotation()

setCountAnnotation

public void setCountAnnotation(OptionalTextAnnotationNameParameter countAnnotation)

getNameAnnotation

public OptionalTextAnnotationNameParameter getNameAnnotation()

setNameAnnotation

public void setNameAnnotation(OptionalTextAnnotationNameParameter nameAnnotation)

getLocationXAnnotation

public OptionalTextAnnotationNameParameter getLocationXAnnotation()

setLocationXAnnotation

public void setLocationXAnnotation(OptionalTextAnnotationNameParameter locationXAnnotation)

getLocationYAnnotation

public OptionalTextAnnotationNameParameter getLocationYAnnotation()

setLocationYAnnotation

public void setLocationYAnnotation(OptionalTextAnnotationNameParameter locationYAnnotation)

getLocationZAnnotation

public OptionalTextAnnotationNameParameter getLocationZAnnotation()

setLocationZAnnotation

public void setLocationZAnnotation(OptionalTextAnnotationNameParameter locationZAnnotation)

getLocationCAnnotation

public OptionalTextAnnotationNameParameter getLocationCAnnotation()

setLocationCAnnotation

public void setLocationCAnnotation(OptionalTextAnnotationNameParameter locationCAnnotation)

getLocationTAnnotation

public OptionalTextAnnotationNameParameter getLocationTAnnotation()

setLocationTAnnotation

public void setLocationTAnnotation(OptionalTextAnnotationNameParameter locationTAnnotation)

getFillColorAnnotation

public OptionalTextAnnotationNameParameter getFillColorAnnotation()

setFillColorAnnotation

public void setFillColorAnnotation(OptionalTextAnnotationNameParameter fillColorAnnotation)

getLineColorAnnotation

public OptionalTextAnnotationNameParameter getLineColorAnnotation()

setLineColorAnnotation

public void setLineColorAnnotation(OptionalTextAnnotationNameParameter lineColorAnnotation)

getLineWidthAnnotation

public OptionalTextAnnotationNameParameter getLineWidthAnnotation()

setLineWidthAnnotation

public void setLineWidthAnnotation(OptionalTextAnnotationNameParameter lineWidthAnnotation)

getAnnotationMergeStrategy

public JIPipeTextAnnotationMergeMode getAnnotationMergeStrategy()

setAnnotationMergeStrategy

public void setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)

isDeduplicate

public boolean isDeduplicate()

setDeduplicate

public void setDeduplicate(boolean deduplicate)

isOnlyFirst

public boolean isOnlyFirst()

setOnlyFirst

public void setOnlyFirst(boolean onlyFirst)