org.hkijena.jipipe.plugins.ilastik.utils.hdf5

Class IJ1Hdf5

java.lang.Object

org.hkijena.jipipe.plugins.ilastik.utils.hdf5.IJ1Hdf5

public final class IJ1Hdf5
extends Object

Method Summary

Modifier and Type	Method and Description
static int	datasetTypeToBitDepth(DatasetType type)
static List<DatasetDescription>	listDatasets(Path file) Return descriptions of supported datasets in an HDF5 file, sorted by their paths.
static ij.ImagePlus	readImage(Path file, String path, List<net.imagej.axis.AxisType> axes, JIPipeProgressInfo progressInfo) Read HDF5 dataset contents.
static void	writeImage(ij.ImagePlus image, Path file, String path, List<net.imagej.axis.AxisType> axes, JIPipeProgressInfo progressInfo)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

listDatasets

public static List<DatasetDescription> listDatasets(Path file)

Return descriptions of supported datasets in an HDF5 file, sorted by their paths.

readImage

public static ij.ImagePlus readImage(Path file,
                                     String path,
                                     List<net.imagej.axis.AxisType> axes,
                                     JIPipeProgressInfo progressInfo)

Read HDF5 dataset contents.

Only 2D-5D datasets with types enumerated in DatasetType are supported.

If not null, callback will be invoked between block writes (N + 1 invocations for N blocks). The callback accepts the total number of bytes written so far. This is useful for progress reporting.

writeImage

public static void writeImage(ij.ImagePlus image,
                              Path file,
                              String path,
                              List<net.imagej.axis.AxisType> axes,
                              JIPipeProgressInfo progressInfo)

datasetTypeToBitDepth

public static int datasetTypeToBitDepth(DatasetType type)