org.hkijena.jipipe.plugins.napari

Class NapariPlugin

java.lang.Object

org.scijava.AbstractContextual

org.scijava.plugin.AbstractRichPlugin

org.scijava.service.AbstractService

org.hkijena.jipipe.JIPipeDefaultJavaPlugin

org.hkijena.jipipe.plugins.JIPipePrepackagedDefaultJavaPlugin

org.hkijena.jipipe.plugins.napari.NapariPlugin

All Implemented Interfaces:

Comparable<org.scijava.Prioritized>, JIPipeValidatable, JIPipeDependency, JIPipeJavaPlugin, JIPipePlugin, org.scijava.Contextual, org.scijava.Disposable, org.scijava.Identifiable, org.scijava.Initializable, org.scijava.Locatable, org.scijava.log.Logged, org.scijava.plugin.HasPluginInfo, org.scijava.plugin.RichPlugin, org.scijava.plugin.SciJavaPlugin, org.scijava.Prioritized, org.scijava.service.Service, org.scijava.Versioned

public class NapariPlugin
extends JIPipePrepackagedDefaultJavaPlugin

Field Summary

Fields

Modifier and Type	Field and Description
static JIPipeDependency	AS_DEPENDENCY Dependency instance to be used for creating the set of dependencies

Constructor Summary

Constructors

Constructor and Description
NapariPlugin()

Method Summary

Modifier and Type	Method and Description
StringList	getDependencyCitations() Returns all dependent work
String	getDependencyId()
StringList	getDependencyProvides() The list of alternative IDs that are covered by this dependency
HTMLText	getDescription()
static PythonEnvironment	getEnvironment()
String	getName()
static void	launchNapari(JIPipeDesktopWorkbench workbench, List<String> arguments, boolean interactive)
static void	launchNapari(JIPipeDesktopWorkbench workbench, List<String> arguments, JIPipeProgressInfo progressInfo, boolean interactive)
void	register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo) Registers custom modules into JIPipe
static void	runNapari(PythonEnvironment environment, List<String> parameters, boolean detached, JIPipeProgressInfo progressInfo) Runs Napari

Methods inherited from class org.hkijena.jipipe.plugins.JIPipePrepackagedDefaultJavaPlugin

getAuthors, getCitation, getDependencyVersion, getLicense, getLogo, getWebsite

Methods inherited from class org.hkijena.jipipe.JIPipeDefaultJavaPlugin

configureDefaultImageJAdapters, configureDefaultImageJAdapters, getAcknowledgements, getCategories, getDependencies, getDependencyLocation, getMetadata, getRegistry, getSummary, registerAnnotationNodeType, registerApplicationSettingsSheet, registerContextMenuAction, registerDatatype, registerDatatype, registerDatatypeConversion, registerDatatypeDisplayOperation, registerDatatypeImportOperation, registerDatatypeOperation, registerDefaultDataTypeViewer, registerEnumParameterType, registerEnvironment, registerEnvironmentInstaller, registerExpressionFunction, registerExpressionFunction, registerFileChooserKnownDirectoryType, registerFileChooserKnownDirectoryType, registerFileChooserKnownFileType, registerFileChooserKnownFileType, registerGraphEditorTool, registerGraphEditorToolBarButtonExtension, registerImageJDataExporter, registerImageJDataImporter, registerMenuExtension, registerMetadataObjectType, registerNodeExample, registerNodeExample, registerNodeExample, registerNodeExamplesFromResources, registerNodeExamplesFromResources, registerNodeTemplate, registerNodeTemplatesFromResources, registerNodeTemplatesFromResources, registerNodeType, registerNodeType, registerNodeType, registerNodeType, registerNodeType, registerNodeTypeCategory, registerParameterEditor, registerParameterGenerator, registerParameterType, registerParameterType, registerParameterType, registerParameterType, registerParameterType, registerParameterType, registerProjectSettingsSheet, registerProjectTemplatesFromResources, registerProjectTemplatesFromResources, registerTableColumnOperation, registerTableColumnOperationAndExpressionFunction, registerUtility, reportValidity, setRegistry

Methods inherited from class org.scijava.service.AbstractService

getContext, setContext, toString

Methods inherited from class org.scijava.plugin.AbstractRichPlugin

getInfo, getPriority, setInfo, setPriority

Methods inherited from class org.scijava.AbstractContextual

context

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.JIPipeJavaPlugin

getSplashIcons, postprocess

Methods inherited from interface org.hkijena.jipipe.JIPipePlugin

canActivate, isActivated, isBeta, isCorePlugin, isScheduledForActivation, isScheduledForDeactivation

Methods inherited from interface org.hkijena.jipipe.JIPipeDependency

getAllDependencies, getAllDependencies, getAllImageJUpdateSiteDependencies, getImageJUpdateSiteDependencies, getImageJUpdateSites, simplifyAndMinimize, toHtmlElement

Methods inherited from interface org.hkijena.jipipe.api.validation.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.scijava.service.Service

initialize, registerEventHandlers

Methods inherited from interface org.scijava.plugin.RichPlugin

getIdentifier, log

Methods inherited from interface org.scijava.Contextual

context

Methods inherited from interface org.scijava.Prioritized

compareTo, getPriority, setPriority

Methods inherited from interface org.scijava.plugin.HasPluginInfo

getInfo, setInfo

Methods inherited from interface org.scijava.Locatable

getLocation

Methods inherited from interface org.scijava.Versioned

getVersion

Methods inherited from interface org.scijava.Disposable

dispose

Field Detail

AS_DEPENDENCY

public static final JIPipeDependency AS_DEPENDENCY

Dependency instance to be used for creating the set of dependencies

Constructor Detail

NapariPlugin

public NapariPlugin()

Method Detail

getEnvironment

public static PythonEnvironment getEnvironment()

launchNapari

public static void launchNapari(JIPipeDesktopWorkbench workbench,
                                List<String> arguments,
                                boolean interactive)

launchNapari

public static void launchNapari(JIPipeDesktopWorkbench workbench,
                                List<String> arguments,
                                JIPipeProgressInfo progressInfo,
                                boolean interactive)

runNapari

public static void runNapari(PythonEnvironment environment,
                             List<String> parameters,
                             boolean detached,
                             JIPipeProgressInfo progressInfo)

Runs Napari

Parameters:

environment - the environment. can be null (then the NapariPluginApplicationSettings environment is taken)

parameters - the cli parameters

detached - if the process is launched detached

progressInfo - the progress info

getDependencyCitations

public StringList getDependencyCitations()

Description copied from class: JIPipeDefaultJavaPlugin

Returns all dependent work

Specified by:

getDependencyCitations in class JIPipeDefaultJavaPlugin

Returns:

dependent work

getName

public String getName()

Specified by:

getName in class JIPipeDefaultJavaPlugin

Returns:

The extension name

getDescription

public HTMLText getDescription()

Specified by:

getDescription in class JIPipeDefaultJavaPlugin

Returns:

The extension description

register

public void register(JIPipe jiPipe,
                     org.scijava.Context context,
                     JIPipeProgressInfo progressInfo)

Description copied from interface: JIPipeJavaPlugin

Registers custom modules into JIPipe

Parameters:

jiPipe - the JIPipe instance that calls this function

context - the SciJava Context

progressInfo - the progress info

getDependencyId

public String getDependencyId()

Returns:

The unique dependency ID

getDependencyProvides

public StringList getDependencyProvides()

Description copied from interface: JIPipeDependency

The list of alternative IDs that are covered by this dependency

Returns:

alternative IDs