| Modifier and Type | Interface and Description |
|---|---|
interface |
JIPipeDependency
Encapsulates a dependency such as an extension or JSON extension
|
interface |
JIPipeJavaPlugin
A Java extension
|
interface |
JIPipePlugin
Interface shared between all JIPipe extensions
|
interface |
JIPipeService
Contains all JIPipe resources
|
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipe
A scijava service that discovers JIPipe plugins in the classpath
|
class |
JIPipeDefaultJavaPlugin
Default implementation of
JIPipeJavaPlugin |
static class |
JIPipeImageJUpdateSiteDependency.List
the List class
|
class |
JIPipeJsonPlugin
A JSON-serializable extension
|
class |
JIPipeMutableDependency
A JSON-serializable
JIPipeDependency. |
class |
JIPipeRegistryIssues
Class that describes issues with the current registration process
|
| Modifier and Type | Class and Description |
|---|---|
static class |
JIPipeAuthorMetadata.List |
static class |
JIPipeNodeTemplate.List |
static class |
OptionalJIPipeAuthorMetadata.List |
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeArtifact |
class |
JIPipeArtifactRepositoryReferenceList |
class |
JIPipeLocalArtifact |
class |
JIPipeRemoteArtifact |
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeCompartmentsPlugin
Extension that provides compartment management functionality
|
| Modifier and Type | Class and Description |
|---|---|
class |
IOInterfaceAlgorithm
Algorithm that passes the input to the output
|
class |
JIPipeProjectCompartment
A project compartment.
|
class |
JIPipeProjectCompartmentOutput
A graph compartment output
Transfers data 1:1 from input to output
|
| Modifier and Type | Class and Description |
|---|---|
class |
SingleImageJAlgorithmRunConfiguration
Manages a single algorithm run
|
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeArtifactEnvironment
An environment that can be filled with an artifact
|
class |
JIPipeEnvironment
Defines an environment
|
class |
JIPipeProcessArtifactEnvironment
An artifact environment that points at an executable
|
| Modifier and Type | Class and Description |
|---|---|
class |
GraphWrapperAlgorithmInput |
class |
GraphWrapperAlgorithmOutput |
class |
GroupingPlugin
Extension for anything that is related to
JIPipeGraphWrapperAlgorithm |
class |
JIPipeGraphWrapperAlgorithm
An algorithm that wraps another algorithm graph
|
class |
JIPipeNodeGroup
A sub-graph algorithm that can be defined by a user
|
class |
JsonAlgorithm
An algorithm that was imported from a Json extension.
|
class |
JsonNodeInfo
Info of a
JIPipeGraphWrapperAlgorithm |
class |
JsonNodeRegistrationTask
Registers a
JsonNodeInfo |
| Modifier and Type | Class and Description |
|---|---|
class |
GraphNodeParameterReferenceGroupCollection
Contains a list of
GraphNodeParameterReferenceGroup and GraphNodeParameterCollectionReference
Stores references to parameters within an JIPipeGraph |
| Modifier and Type | Class and Description |
|---|---|
class |
LoopEndNode
Deprecated.
|
class |
LoopingPlugin
Extension for anything that is related to
JIPipeGraphWrapperAlgorithm |
class |
LoopStartNode
Deprecated.
|
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeAlgorithm
An
JIPipeGraphNode that contains a non-empty workload. |
class |
JIPipeGraph
Manages multiple
JIPipeGraphNode instances as graph |
class |
JIPipeGraphNode
A node is a set of input and output data slots, and a run() function
It is part of the
JIPipeGraph. |
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeIteratingAlgorithm
An
JIPipeAlgorithm that iterates through each data row. |
class |
JIPipeIteratingMissingDataGeneratorAlgorithm
An
JIPipeAlgorithm that passes incoming data to their corresponding output slots if the iteration step is complete
and otherwise runs a generator function that generates missing data items. |
class |
JIPipeMergingAlgorithm
An
JIPipeAlgorithm that applies a similar algorithm to JIPipeIteratingAlgorithm, but does create JIPipeMultiIterationStep instead. |
class |
JIPipeMissingDataGeneratorAlgorithm
An
JIPipeAlgorithm that passes incoming data to their corresponding output slots if the iteration step is complete
and otherwise runs a generator function that generates missing data items. |
class |
JIPipeParameterlessSimpleIteratingAlgorithm
An
JIPipeAlgorithm that iterates through each data row. |
class |
JIPipeParameterSlotAlgorithm
An
JIPipeAlgorithm that has an optional slot that allows to supply parameter data sets. |
class |
JIPipeSimpleIteratingAlgorithm
An
JIPipeAlgorithm that iterates through each data row. |
class |
JIPipeSingleIterationAlgorithm
An
JIPipeAlgorithm that applies a single iteration with a iteration step containing all data. |
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeAnnotationGraphNode
A node that is an annotation
Nodes of this type are rendered by
JIPipeDesktopAnnotationGraphNodeUI instead of JIPipeDesktopGraphNodeUI and have a custom size information |
| Modifier and Type | Class and Description |
|---|---|
class |
DefaultJIPipeParameterGenerator
A default implementation of
JIPipeParameterGenerator that shows all parameters of this JIPipeParameterCollection
in a dialog before generating the data. |
class |
JIPipeDynamicParameterCollection
Holds a user-definable set of parameters
|
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeProject
A JIPipe project.
|
| Modifier and Type | Interface and Description |
|---|---|
interface |
JIPipeNodeRegistrationTask
A task for algorithm registration that can handle algorithm dependencies
|
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeDefaultNodeRegistrationTask
Mutable implementation of
JIPipeNodeRegistrationTask |
class |
JIPipeJavaNodeRegistrationTask
Registers a Java algorithm
|
class |
JIPipeNodeRegistry
Manages known algorithms and their annotations
|
| Modifier and Type | Method and Description |
|---|---|
void |
JIPipeValidationReport.report(JIPipeValidationReportContext context,
JIPipeValidatable validatable)
Reports a
JIPipeValidatable into this report |
| Modifier and Type | Class and Description |
|---|---|
class |
JFreeChartPlotEditor
User interface for displaying and creating plots
|
class |
JIPipeDesktopPlotSeriesEditor
Constructs a series from a set of columns
|
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeDesktopQuickRun
Allows to test one algorithm with multiple parameters
|
| Constructor and Description |
|---|
JIPipeDesktopReloadableValidityChecker(JIPipeDesktopWorkbench workbench,
JIPipeValidatable validatable) |
JIPipeDesktopReloadableValidityChecker(JIPipeDesktopWorkbench workbench,
JIPipeValidatable validatable,
MarkdownText helpDocument) |
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipePrepackagedDefaultJavaPlugin
JIPipeDefaultJavaPlugin for internal usage |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotationsPlugin
Extension that provides data types and algorithms to modify data annotations
|
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateByExpression
Algorithm that annotates all data with the same annotation
|
class |
AnnotateByProjectPaths |
class |
AnnotateWithAnnotationTable
Algorithm that merges the annotations of all inputs and outputs the data with the shared annotations
|
class |
AnnotateWithData |
class |
AnnotateWithDataString
Generates annotations from filenames
|
class |
AnnotateWithSourceSlot
Generates annotations from filenames
|
class |
ConvertToAnnotationTable
Removes a specified annotation
|
class |
DataAnnotationToStringAnnotation |
class |
ExtractAndReplaceAnnotation
Generates annotations from filenames
|
class |
ExtractDataAnnotation |
class |
FilterByAnnotation
Algorithm that splits the input data by a specified annotation
|
class |
FilterByAnnotationIfElse
Algorithm that splits the input data by a specified annotation
|
class |
GenerateRandomUniqueAnnotation
Generates annotations from filenames
|
class |
GenerateUniqueAnnotation
Generates annotations from filenames
|
class |
MergeAnnotations
Algorithm that merges the annotations of all inputs and outputs the data with the shared annotations
|
class |
MergeDataSlots
Merges the input slot tables into one data slot
|
class |
ModifyAnnotationScript
Algorithm that annotates all data with the same annotation
|
class |
OverwriteAnnotations |
class |
RemoveAnnotationAlgorithm
Removes a specified annotation
|
class |
RemoveArrayAnnotationsAlgorithm |
class |
RemoveDataAnnotations |
class |
RemoveNAAnnotationColumnsAlgorithm |
class |
RenameAnnotation
Generates annotations from filenames
|
class |
RenameDataAnnotation
Generates annotations from filenames
|
class |
SetSingleAnnotation
Algorithm that annotates all data with the same annotation
|
class |
SimplifyAnnotationsAlgorithm |
class |
SplitByAnnotation
Algorithm that splits the input data by a specified annotation
|
class |
SplitByAnnotationScript
Algorithm that annotates all data with the same annotation
|
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotationTableFromFile
Imports
AnnotationTableData from a file |
| Modifier and Type | Class and Description |
|---|---|
class |
ArtifactsPlugin
The core extension
|
| Modifier and Type | Class and Description |
|---|---|
class |
BatchAssistantPlugin |
| Modifier and Type | Class and Description |
|---|---|
class |
CellposePlugin |
| Modifier and Type | Class and Description |
|---|---|
class |
ImportCellposeModelFromFileAlgorithm |
class |
ImportCellposeSizeModelFromFileAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
Cellpose2SegmentationInferenceAlgorithm |
class |
Cellpose2TrainingAlgorithm |
class |
ImportPretrainedCellpose2ModelAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
Cellpose3DenoiseInferenceAlgorithm |
class |
Cellpose3DenoiseTrainingAlgorithm |
class |
Cellpose3SegmentationInferenceAlgorithm |
class |
Cellpose3SegmentationTrainingAlgorithm |
class |
ImportPretrainedCellpose3DenoiseModelAlgorithm |
class |
ImportPretrainedCellpose3SegmentationModelAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
Cellpose1InferenceAlgorithm
Deprecated.
New implementation will be CellposeAlgorithm2 that is based around the Cellpose CLI
|
class |
Cellpose1TrainingAlgorithm
Deprecated.
|
class |
ImportLegacyCellposeModelAlgorithm
Deprecated.
|
class |
ImportLegacyCellposeSizeModelAlgorithm
Deprecated.
|
class |
LegacyCellpose2InferenceAlgorithm
Deprecated.
|
class |
LegacyCellpose2TrainingAlgorithm
Deprecated.
|
| Modifier and Type | Class and Description |
|---|---|
class |
PretrainedCellpose2SegmentationModelList |
| Modifier and Type | Class and Description |
|---|---|
class |
PretrainedCellpose3DenoiseModelList |
class |
PretrainedCellpose3SegmentationModelList |
| Modifier and Type | Class and Description |
|---|---|
class |
CLIJCommandNode |
class |
CLIJPlugin
Integrates CLIJ
|
| Modifier and Type | Class and Description |
|---|---|
class |
Clij2ExecuteKernelIterating |
class |
Clij2ExecuteKernelSimpleIterating |
class |
Clij2PullAlgorithm |
class |
Clij2PushAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
CorePlugin
The core extension
|
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeCommentNode |
| Modifier and Type | Class and Description |
|---|---|
class |
DataDirectoriesPlugin |
class |
JIPipeDataDirectoryEnvironment
An artifact environment that does no have any function workload, but only contains data
Points towards a directory
|
static class |
JIPipeDataDirectoryEnvironment.List |
| Modifier and Type | Class and Description |
|---|---|
class |
DevelopmentPlugin
Extension containing some additional tools
|
| Modifier and Type | Class and Description |
|---|---|
class |
ExpressionPlugin |
static class |
JIPipeExpressionParameter.List |
class |
NamedStringQueryExpression |
static class |
NamedStringQueryExpression.List |
class |
NamedTextAnnotationGeneratorExpression |
static class |
NamedTextAnnotationGeneratorExpression.List |
class |
TableColumnSourceExpressionParameter
Parameter that acts as source (via matching a column) or a generator
|
static class |
TableColumnSourceExpressionParameter.List |
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeCustomExpressionVariablesParameter
A parameter collection that allows the creation of custom expression variables
Please note that the
JIPipeParameter annotation should have JIPipeParameterSerializationMode set to 'NestedCollection'. |
| Modifier and Type | Class and Description |
|---|---|
class |
FilesystemPlugin
Extension that provides filesystem data types
|
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateWithPathProperties |
class |
AnnotationTableToPaths
Filters input files
|
class |
AnnotationToPath
Filters input files
|
class |
ConcatenateByParameter
Applies subfolder navigation to each input folder
|
class |
ConcatenatePaths
Applies subfolder navigation to each input folder
|
class |
ConvertDataToOutputPath
Applies subfolder navigation to each input folder
|
class |
ConvertToExportedPath |
class |
CopyPath
Applies subfolder navigation to each input folder
|
class |
CreateDirectory
Applies subfolder navigation to each input folder
|
class |
ExportData |
class |
ExportDataByParameter |
class |
ExportDataByParameter2 |
class |
ExportDataTable |
class |
ExportDataTableByParameter |
class |
ExtractFileName
Applies subfolder navigation to each input folder
|
class |
ExtractParent
Applies subfolder navigation to each input folder
|
class |
FilterPaths
Filters input files
|
class |
ImportDataRowFolder |
class |
ImportDataTableArchive |
class |
ImportDataTableDirectory |
class |
ListFiles
Algorithm that lists files in each folder
|
class |
ListSubfolders
Algorithms that lists the sub folders for each input folder
|
class |
ModifyPath |
class |
ModifyPathWithExpression |
class |
RelativizeByParameter
Applies subfolder navigation to each input folder
|
class |
RelativizePaths
Applies subfolder navigation to each input folder
|
class |
RenameByString
Applies subfolder navigation to each input folder
|
class |
SimpleFileAnnotationGenerator
Generates annotations from filenames
|
class |
SimpleFolderAnnotationGenerator
Algorithm that generates annotations from folder names
|
class |
SimplePathAnnotationGenerator
Algorithm that generates annotations from folder names
|
| Modifier and Type | Class and Description |
|---|---|
class |
ListZARRDirectoryZIPDatasetsAlgorithm |
class |
ListZARRURIDatasetsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
DownloadFilesDataSource |
class |
FileDataSource
Provides an input file
|
class |
FileListDataSource
Provides an input file
|
class |
FolderDataSource
Provides an input folder
|
class |
FolderListDataSource
Provides an input folder
|
class |
OutputFolderDataSource |
class |
PathDataSource
Provides an input file
|
class |
PathFromUserDataSource |
class |
PathListDataSource
Provides an input folder
|
class |
ProjectUserFolderDataSource |
class |
TemporaryFileDataSource |
class |
TemporaryFolderDataSource |
class |
URIListDataSource |
| Modifier and Type | Class and Description |
|---|---|
class |
FormsPlugin
Extension that adds forms
|
| Modifier and Type | Class and Description |
|---|---|
class |
FormGeneratorAlgorithm
A node base class that adds a new form element into the list of existing forms
|
class |
IteratingFormProcessorAlgorithm |
class |
MergingFormProcessorAlgorithm |
class |
SimpleFormGeneratorAlgorithm |
class |
SimpleIteratingFormProcessorAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
BooleanFormGeneratorAlgorithm |
class |
DoubleFormGeneratorAlgorithm |
class |
EnumFormGeneratorAlgorithm |
class |
GroupHeaderFormGeneratorAlgorithm |
class |
IntegerFormGeneratorAlgorithm |
class |
PathFormGeneratorAlgorithm |
class |
StringFormGeneratorAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
BooleanFormData |
class |
DoubleFormData |
class |
EnumFormData |
class |
FormData
Base class for any form data.
|
class |
GroupHeaderFormData |
class |
IntegerFormData |
class |
ParameterFormData
FormData that is put into a JIPipeDesktopFormPanel |
class |
PathFormData |
class |
StringFormData |
| Modifier and Type | Class and Description |
|---|---|
class |
GraphAnnotationPlugin |
| Modifier and Type | Class and Description |
|---|---|
class |
AbstractTextBoxAnnotationGraphNode |
class |
ArrowAnnotationGraphNode |
class |
GroupBoxAnnotationGraphNode |
class |
ImageBoxAnnotationGraphNode |
class |
TextBoxAnnotationGraphNode |
| Modifier and Type | Class and Description |
|---|---|
class |
IJ3DPlugin |
| Modifier and Type | Class and Description |
|---|---|
class |
ImportROI3DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
DistanceMap3DAlgorithm |
class |
ErodedVolumeFraction3DAlgorithm |
class |
Voronoi3DAlgorithm |
class |
Watershed3DSplittingAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
EdgeFilter3DAlgorithm |
class |
FindMaxima3DAlgorithm |
class |
SymmetryFilter3DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
Fast3DFiltersAdaptiveAlgorithm |
class |
Fast3DFiltersAlgorithm |
class |
Fast3DFiltersCloseAlgorithm |
class |
Fast3DFiltersLocalMaxAlgorithm |
class |
Fast3DFiltersMaxAlgorithm |
class |
Fast3DFiltersMeanAlgorithm |
class |
Fast3DFiltersMedianAlgorithm |
class |
Fast3DFiltersMinAlgorithm |
class |
Fast3DFiltersOpenAlgorithm |
class |
Fast3DFiltersSobelAlgorithm |
class |
Fast3DFiltersTopHatAlgorithm |
class |
Fast3DFiltersVarianceAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ExtractOverlay3DAlgorithm |
class |
RemoveOverlay3DAlgorithm |
class |
RenderOverlay3DAlgorithm
Wrapper around
RoiDrawer |
class |
SetOverlay3DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ExportROI3DAlgorithm
Deprecated.
|
class |
ExportROI3DAlgorithm2 |
| Modifier and Type | Class and Description |
|---|---|
class |
Roi2DToRoi3DConverterAlgorithm |
class |
Roi3DTo3DMeshAlgorithm |
class |
Roi3DToLabelsAlgorithm |
class |
Roi3DToMaskAlgorithm |
class |
Roi3DToRGBAlgorithm |
class |
Roi3DToRoi2DConverterAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
FilterRoi3DByOverlapAlgorithm |
class |
FilterRoi3DByStatisticsAlgorithm
Wrapper around
RoiManager |
class |
FilterRoi3DListsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
FindParticles3DAlgorithm |
class |
Roi3DFromLabelsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ExtractRoi3DRelationStatisticsAlgorithm |
class |
ExtractRoi3DStatisticsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
MergeROI3DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ExtractROI3DMetadataAlgorithm |
class |
RemoveROI3DMetadataAlgorithm |
class |
SetROI3DMetadataFromTableAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ChangeRoi3DPropertiesAlgorithm |
class |
ChangeRoi3DPropertiesFromExpressionsAlgorithm |
class |
ChangeRoi3DPropertiesFromTableAlgorithm |
class |
ColorRoi3DByNameAlgorithm |
class |
ColorRoi3DByStatisticsAlgorithm
Wrapper around
RoiManager |
class |
ROI3DCalculatorAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
OutlineRoi3DAlgorithm
Wrapper around
RoiManager |
class |
RemoveBorderRoi3DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ExplodeRoi3DListAlgorithm |
class |
SplitRoi3DIntoConnectedComponentsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ConstantSpotSegmentation3DAlgorithm |
class |
DifferenceSpotSegmentation3DAlgorithm |
class |
GaussianFitSpotSegmentation3DAlgorithm |
class |
HysteresisSegmentation3DAlgorithm |
class |
IterativeThreshold3DAlgorithm |
class |
LocalMeanSpotSegmentation3DAlgorithm |
class |
NucleiSegmentation3DAlgorithm |
class |
SpotSegmentation3DAlgorithm |
class |
Watershed3DSegmentationAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
FilamentsPlugin
Extension that adds filaments supports
|
| Modifier and Type | Class and Description |
|---|---|
class |
TSOAXEnvironment
Parameter that describes a TSOAX environment
|
static class |
TSOAXEnvironment.List
A list of
TSOAXEnvironment |
| Modifier and Type | Class and Description |
|---|---|
class |
ConvertFilamentCyclesToROIAlgorithm |
class |
ConvertFilamentsTo3DMeshAlgorithm |
class |
ConvertFilamentsToLabels2Algorithm |
class |
ConvertFilamentsToLabelsAlgorithm |
class |
ConvertFilamentsToMaskAlgorithm |
class |
ConvertFilamentsToRGBAlgorithm |
class |
ConvertFilamentsToRoi3DAlgorithm |
class |
ConvertFilamentsToRoiAlgorithm |
class |
ConvertROIToFilamentsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
FilterFilamentEdgesByProperties |
class |
FilterFilamentsByProperties |
class |
FilterFilamentVerticesByProperties |
class |
RemoveBorderFilaments |
| Modifier and Type | Class and Description |
|---|---|
class |
ImportFilamentsFromJsonAlgorithm |
class |
SkeletonToFilaments2DAlgorithm |
class |
SkeletonToFilaments3DAlgorithm |
class |
SkeletonToSimplifiedFilamentsFijiAlgorithm |
class |
TSOAX2DAlgorithm |
class |
TSOAX3DAlgorithm |
class |
TSOAXAlgorithm |
class |
TSOAXResultAnalysisAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
MeasureEdgesAlgorithm |
class |
MeasureFilamentsAlgorithm |
class |
MeasureVerticesAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
MergeFilamentsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ChangeFilamentEdgePropertiesExpressionAlgorithm |
class |
ChangeFilamentEdgePropertiesManuallyAlgorithm |
class |
ChangeFilamentVertexPropertiesExpressionAlgorithm |
class |
ChangeFilamentVertexPropertiesManuallyAlgorithm |
class |
ConnectVerticesAlgorithm |
class |
ConnectVerticesFastAlgorithm |
class |
ErodeEndVerticesAlgorithm |
class |
FilamentCyclesToComponentsAlgorithm |
class |
FindLinearFilamentVertexOrderAlgorithm |
class |
FlattenFilamentsAlgorithm |
class |
GrowEndVerticesAlgorithm |
class |
RemoveVertexValueBackupsAlgorithm |
class |
RestoreVertexValueBackupAlgorithm |
class |
SetFilamentMetadataToComponentIndexAlgorithm |
class |
SetVertexMetadataFromImageAlgorithm |
class |
SetVertexPhysicalSizeFromImageAlgorithm |
class |
SetVertexRadiusFromImageAlgorithm |
class |
SetVertexValueFromImageAlgorithm |
class |
SubdivideFilamentEdges |
| Modifier and Type | Class and Description |
|---|---|
class |
SetOverlayFilamentsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
CopyFilamentsAcrossZCTAlgorithm |
class |
FixOverlapsNonBranchingAlgorithm |
class |
RemoveDuplicateVerticesAlgorithm |
class |
SimplifyFilamentsAlgorithm |
class |
SmoothFilamentsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
SplitFilamentsIntoConnectedComponentsAlgorithm |
class |
SplitFilamentsIntoCyclesAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
MultiTemplateMatchingAlgorithm |
class |
MultiTemplateMatchingPlugin
Extension that adds ImageJ2 algorithms
|
| Modifier and Type | Class and Description |
|---|---|
class |
OCRPlugin
Extension that adds filaments supports
|
| Modifier and Type | Class and Description |
|---|---|
class |
TesseractOCREnvironment
Parameter that describes a TSOAX environment
|
static class |
TesseractOCREnvironment.List
A list of
TesseractOCREnvironment |
| Modifier and Type | Class and Description |
|---|---|
class |
TesseractOCRAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
TrackMatePlugin |
| Modifier and Type | Class and Description |
|---|---|
class |
ConvertSpotsToRoiNode |
class |
ConvertTracksToRoiNode |
| Modifier and Type | Class and Description |
|---|---|
class |
CreateSpotDetectorNode |
class |
CreateSpotTrackerNode |
| Modifier and Type | Class and Description |
|---|---|
class |
MeasureSpotsNode |
class |
MergeSpotsNode |
class |
SplitSpotsNode |
class |
SpotDetectorNode |
class |
SpotFilterNode |
class |
SpotsToRGBNode |
| Modifier and Type | Class and Description |
|---|---|
class |
FollowSpotsPerTrackNode |
class |
MeasureBranchesNode |
class |
MeasureEdgesNode |
class |
MeasureTracksNode |
class |
MergeTracksNode |
class |
SplitTracksNode |
class |
TrackFilterNode |
class |
TrackingNode |
class |
TrackSchemeRendererNode |
class |
TracksToRGBNode |
| Modifier and Type | Class and Description |
|---|---|
static class |
SpotFeatureFilterParameter.List |
static class |
SpotFeaturePenaltyParameter.List |
static class |
TrackFeatureFilterParameter.List |
| Modifier and Type | Class and Description |
|---|---|
class |
WekaPlugin |
| Modifier and Type | Class and Description |
|---|---|
class |
ImportWekaModelFromFileAlgorithm |
class |
WekaClassification2DAlgorithm |
class |
WekaClassification3DAlgorithm |
class |
WekaTrainingLabels2DAlgorithm |
class |
WekaTrainingLabels2DAlgorithm2 |
class |
WekaTrainingMask2DAlgorithm |
class |
WekaTrainingMask2DAlgorithm2 |
class |
WekaTrainingROI2DAlgorithm |
class |
WekaTrainingROI3DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
IlastikPlugin |
| Modifier and Type | Class and Description |
|---|---|
class |
IlastikEnvironment
Parameter that describes a Python environment
|
static class |
IlastikEnvironment.List
A list of
IlastikEnvironment |
| Modifier and Type | Class and Description |
|---|---|
class |
ExportIlastikHDF5ImageAlgorithm |
class |
IlastikAutoContextAlgorithm |
class |
IlastikObjectClassificationAlgorithm |
class |
IlastikPixelClassificationAlgorithm |
class |
IlastikPredictionMapsObjectClassificationAlgorithm |
class |
IlastikSegmentationImageObjectClassificationAlgorithm |
class |
ImportIlastikHDF5ImageAlgorithm |
class |
ImportIlastikModel |
| Modifier and Type | Class and Description |
|---|---|
class |
ImageJ2OpNode |
class |
ImageJ2Plugin
Extension that adds ImageJ2 algorithms
|
| Modifier and Type | Class and Description |
|---|---|
class |
CreateIJ2OutOfBoundsFactoryAlgorithm |
class |
CreateIJ2ShapeAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ImageJAlgorithmsPlugin
Extension that adds ImageJ2 algorithms
|
| Modifier and Type | Class and Description |
|---|---|
class |
MacroWrapperAlgorithm
An algorithm that wraps around an ImageJ macro
|
| Modifier and Type | Class and Description |
|---|---|
class |
AnalyzeSkeleton2D3DAlgorithm |
class |
AnnotateByImageStatisticsExpressionAlgorithm
Wrapper around
RoiManager |
class |
FindParticles2D
Converts a mask to ROI and ROI measurements
|
class |
ImageStatisticsAlgorithm
Wrapper around
RoiManager |
class |
ImageStatisticsExpressionAlgorithm
Wrapper around
RoiManager |
class |
OrientationVectorField2DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
RollingBallBackgroundEstimator2DAlgorithm
Wrapper around
RankFilters |
| Modifier and Type | Class and Description |
|---|---|
class |
BinarizeAlgorithm |
class |
BitwiseLogicalOperationAlgorithm |
class |
ConditionalInverterAlgorithm |
class |
ConnectedComponentsLabeling2DAlgorithm |
class |
ConnectedComponentsLabeling3DAlgorithm |
class |
ConvexifyAlgorithm |
class |
DistanceTransformWatershed2DAlgorithm
Wrapper around
EDM |
class |
KeepLargestRegionAlgorithm |
class |
RemoveLargestRegionAlgorithm |
class |
UltimateErodedPoints2DAlgorithm
Wrapper around
EDM |
class |
VolumeOpening2DAlgorithm |
class |
VolumeOpening3DAlgorithm |
class |
Voronoi2DAlgorithm
Wrapper around
EDM |
| Modifier and Type | Class and Description |
|---|---|
class |
BoxFilter2DAlgorithm
Wrapper around
ImageProcessor |
class |
BoxFilter3DAlgorithm
Wrapper around
GaussianBlur |
class |
GaussianBlur2DAlgorithm
Wrapper around
GaussianBlur |
class |
GaussianBlur3DAlgorithm
Wrapper around
GaussianBlur |
class |
MedianBlurFilter2DAlgorithm
Wrapper around
RankFilters |
class |
MedianBlurFilter3DAlgorithm
Wrapper around
GaussianBlur |
class |
MedianBlurGreyscale8U2DAlgorithm
Wrapper around
ImageProcessor |
class |
MedianBlurRGB2DAlgorithm
Wrapper around
ImageProcessor |
| Modifier and Type | Class and Description |
|---|---|
class |
CopyPhysicalDimensionsBetweenImagesAlgorithm |
class |
DrawScaleBarAlgorithm |
class |
SetPhysicalDimensionsAlgorithm |
class |
SetPhysicalDimensionsByAnnotationsAlgorithm |
class |
SetPhysicalDimensionsByExpressionsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
Coloc2Node |
| Modifier and Type | Class and Description |
|---|---|
class |
ArrangeChannelsAlgorithm
Wrapper around
ChannelArranger |
class |
BlendImagesAlgorithm |
class |
ColorToGreyscaleExpression2D |
class |
CombineChannelsToRGBAlgorithm |
class |
InvertColorsAlgorithm
Wrapper around
ImageProcessor |
class |
MergeChannelsAlgorithm
Wrapper around
ImageProcessor |
class |
MergeHSBChannelsAlgorithm |
class |
MergeLABChannelsAlgorithm |
class |
MergeRGBChannelsAlgorithm |
class |
NewSplitChannelsAlgorithm
Wrapper around
ChannelSplitter |
class |
OverlayImagesAlgorithm
Deprecated.
Use
BlendImagesAlgorithm instead |
class |
RenderImageToRGBAlgorithm |
class |
SplitChannelsAlgorithm
Deprecated.
|
class |
SplitChannelsByTableAlgorithm
Wrapper around
ChannelSplitter |
class |
SplitRGBChannelsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
CLAHEContrastEnhancer
Applies CLAHE image enhancing
|
class |
HistogramContrastEnhancerAlgorithm
This class is based on
ContrastEnhancer
This class is not very portable, so I adapted the code here |
class |
IlluminationCorrection2DAlgorithm
Applies illumination correction
|
class |
ImageJContrastEnhancerAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ConvertImageAlgorithm |
class |
ConvertImageTo16BitAlgorithm |
class |
ConvertImageTo16BitAutoContrastAlgorithm |
class |
ConvertImageTo32BitAlgorithm |
class |
ConvertImageTo8BitAlgorithm |
class |
ConvertImageTo8BitAutoContrastAlgorithm |
class |
ConvertImageToHSBAlgorithm |
class |
ConvertImageToLABAlgorithm |
class |
ConvertImageToRGBAlgorithm |
class |
ImageToMatrixAlgorithm
Algorithm that generates
ResultsTableData as histogram |
class |
ImageToTableAlgorithm
Algorithm that generates
ResultsTableData as histogram |
class |
ImageToTableColumnAlgorithm |
class |
MatrixToImageAlgorithm |
class |
MultipleImagesToTableAlgorithm
Algorithm that generates
ResultsTableData as histogram |
class |
TableColumnToImageAlgorithm |
class |
TableToImageAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ConvolveByImage2DAlgorithm
Wrapper around
Convolver |
class |
ConvolveByParameter2DAlgorithm
Wrapper around
Convolver |
| Modifier and Type | Class and Description |
|---|---|
class |
ImageStackFromFolder
Loads an image data from a file via IJ.openFile()
|
class |
OMEImageFromImagePlus |
| Modifier and Type | Class and Description |
|---|---|
class |
CircularHoughSegmentation2DAlgorithm
Segments using a Hough circle transform
|
class |
CornerHarris2DAlgorithm |
class |
FastCircularHoughSegmentation2DAlgorithm
Segments using a Hough circle transform
This code is based on ...
|
class |
GlobalLinesHoughDetection2DAlgorithm |
class |
LineSegmentsHoughDetection2DAlgorithm |
class |
LinesHoughDetection2DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
CreateStackAlgorithm |
class |
ExpressionSlicerAlgorithm |
class |
HyperstackSlicerAlgorithm |
class |
Merge2DToHyperstackAlgorithm |
class |
NewZProjectorAlgorithm
Wrapper around
ZProjector |
class |
ReorderDimensionsAlgorithm
Algorithm that reorders Hyperstack dimensions
|
class |
ReorderHyperstackSlicesExpressionAlgorithm |
class |
ResliceAlgorithm |
class |
SplitByDimensionAlgorithm |
class |
StackCombinerAlgorithm |
class |
StackInverterAlgorithm
Wrapper around
ImageProcessor |
class |
StackSplitterAlgorithm
Wrapper around
ChannelArranger |
class |
StackTo2DAlgorithm
Wrapper around
ImageProcessor |
class |
StackToDimensionMerger2Algorithm
Wrapper around
ImageProcessor |
class |
StackToDimensionMergerAlgorithm
Wrapper around
ImageProcessor |
class |
ZProjectorAlgorithm
Wrapper around
ZProjector |
| Modifier and Type | Class and Description |
|---|---|
class |
CannyEdgeDetectorAlgorithm
This is the JIPipe version of the ImageJ plugin ...
|
class |
LaplacianEdgeDetectorAlgorithm
Wrapper around
ImageProcessor |
class |
SobelEdgeDetectorAlgorithm
Wrapper around
ImageProcessor |
| Modifier and Type | Class and Description |
|---|---|
class |
AlternatingMorphologicalFilters2DAlgorithm |
class |
DerivativesFeaturesAlgorithm |
class |
DifferenceOfGaussian2DAlgorithm
Wrapper around
GaussianBlur |
class |
DirectionalFilter2DAlgorithm |
class |
FrangiVesselnessFeatures
Applies CLAHE image enhancing
|
class |
HessianFeatureAlgorithm |
class |
LaplacianOfGaussian2DAlgorithm
Based on code by Dimiter Prodanov
...
|
class |
LocalMaxima2DAlgorithm
Wrapper around
MaximumFinder |
class |
MeijeringVesselness2DFeatures
Applies CLAHE image enhancing
|
class |
MorphologicalFeatureContrast2DAlgorithm |
class |
MorphologicalTextureContrast2DAlgorithm |
class |
OrientationFeatures2DAlgorithm |
class |
StructureFeatureAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
FFT2DForwardTransform
Applies a FFT forward transformation
|
class |
FFT2DInverseTransform
Applies a FFT forward transformation
|
class |
FFT2DSwapQuadrants
Applies a FFT forward transformation
|
class |
FFTBandPassFilter |
class |
FFTCustomFilter |
| Modifier and Type | Class and Description |
|---|---|
class |
DrawMaskAlgorithm |
class |
DrawROIAlgorithm |
class |
MaskDrawerFormData
Structural
FormData for drawing masks |
class |
ROIDrawerFormData
Structural
FormData for drawing ROIs |
| Modifier and Type | Class and Description |
|---|---|
class |
GenerateLUTImageFromColorMap
Wrapper around
ImageProcessor |
class |
GenerateMissingImageFromMathExpression2D
Wrapper around
ImageProcessor |
class |
GenerateMissingTablesAlgorithm
Deprecated.
|
class |
GenerateMissingTablesAlgorithm2 |
class |
GenerateMissingZeroImage
Wrapper around
ImageProcessor |
class |
GenerateStructureElement2DAlgorithm
Wrapper around
ImageProcessor |
class |
GenerateStructureElement3DAlgorithm
Wrapper around
ImageProcessor |
class |
GenerateZeroImage
Wrapper around
ImageProcessor |
class |
ImageFromMatrix2DAlgorithm
Wrapper around
Convolver |
| Modifier and Type | Class and Description |
|---|---|
class |
ExportImage2Algorithm |
class |
ExportImageAlgorithm
Deprecated.
|
class |
ExportImageDirectorySlotAlgorithm |
class |
ExportROIAlgorithm
Deprecated.
|
class |
ExportROIAlgorithm2 |
class |
ExportTableAlgorithm
Deprecated.
|
class |
ExportTableAlgorithm2 |
class |
ExportTableAsXLSXAlgorithm
Deprecated.
|
class |
ExportTableAsXLSXAlgorithm2 |
class |
ImagePlusFromGUI
Imports
ImagePlusData from the GUI |
class |
ImagePlusToGUI
Imports
ImagePlusData from the GUI |
class |
ResultsTableFromGUI
Imports
ImagePlusData from the GUI |
class |
ResultsTableToGUI
Imports
ImagePlusData from the GUI |
class |
ROIFromGUI
Imports
ImagePlusData from the GUI |
class |
ROIToGUI
Imports
ImagePlusData from the GUI |
class |
RunImageJExporterAlgorithm |
class |
RunImageJImporterAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateWithOverlapMeasureLabelsAlgorithm |
class |
CropLabelsAlgorithm |
class |
DilateLabelsAlgorithm |
class |
ExpandLabelsAlgorithm |
class |
ExtractLabelStatisticsAlgorithm |
class |
GetLabelBoundariesAlgorithm |
class |
KeepLargestLabelAlgorithm |
class |
LabelsToMaskAlgorithm |
class |
LabelsToRGBAlgorithm |
class |
LabelsToROIAlgorithm |
class |
MergeLabelsAlgorithm |
class |
MergeLabelsToBinsAlgorithm |
class |
MergeLabelsToThicknessAlgorithm |
class |
MergeSmallLabelsAlgorithm |
class |
OverlapMeasureLabelsAlgorithm |
class |
RemapLabelsAlgorithm |
class |
ReplaceLabelsAlgorithm |
class |
ReplaceLabelsByTableAlgorithm |
class |
SeparateLabelsAlgorithm |
class |
SeparateTouchingLabels2DAlgorithm |
class |
SplitLabelsConnectedComponents2DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
FilterLabelsByExpression2DAlgorithm |
class |
FilterLabelsByExpression3DAlgorithm |
class |
FilterLabelsByIdAlgorithm |
class |
FilterLabelsByMaskAlgorithm |
class |
FilterLabelsByOverlapAlgorithm |
class |
FilterLabelsByStatisticsAlgorithm
Wrapper around
RoiManager |
class |
FilterLabelsByThicknessAlgorithm |
class |
RemoveBorderLabelsAlgorithm |
class |
RemoveLargestLabelAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ApplyLUTAlgorithm |
class |
LUTInverterAlgorithm |
class |
RemoveLUTAlgorithm |
class |
SetLUTFromColorMapAlgorithm |
class |
SetLUTFromColorsAlgorithm |
class |
SetLUTFromImageAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
SetToColorAlgorithm |
class |
SetToContentAwareAlgorithm |
class |
SetToValueAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ApplyColorMathExpression2DExpression |
class |
ApplyMathExpression2DAlgorithm
Wrapper around
ImageProcessor |
class |
ApplyTransform2DAlgorithm
Wrapper around
ImageProcessor |
class |
ApplyVectorMathExpression2DAlgorithm
Wrapper around
ImageProcessor |
class |
DivideByMaximumAlgorithm
Wrapper around
ImageProcessor |
class |
FastImageArithmeticsAlgorithm |
class |
GenerateFromMathExpression2D
Wrapper around
ImageProcessor |
class |
GenerateVectorFromMathExpression
Wrapper around
ImageProcessor |
class |
Hessian2DAlgorithm
Deprecated.
|
class |
ImageCalculator2DExpression |
class |
ImageComparer2DAlgorithm
Deprecated.
|
class |
LegacyApplyMath2DAlgorithm
Deprecated.
|
class |
LegacyImageCalculator2DAlgorithm
Deprecated.
|
class |
LegacyImageCalculator2DMergingAlgorithm
Deprecated.
|
class |
RemoveNaNFilter2DAlgorithm
Wrapper around
RankFilters |
class |
RoundFloatImageAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ApplyDistanceTransform2DAlgorithm
Wrapper around
EDM |
class |
ChamferDistanceMap2DAlgorithm |
class |
ChamferDistanceMap3DAlgorithm |
class |
GeodesicDistanceMap2DAlgorithm |
class |
LabelChamferDistanceMap3DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ExtendedMaxima2DAlgorithm |
class |
ExtendedMaxima3DAlgorithm |
class |
ExtendedMinima2DAlgorithm |
class |
ExtendedMinima3DAlgorithm |
class |
ImposeMaxima2DAlgorithm |
class |
ImposeMaxima3DAlgorithm |
class |
LocalImageCalculator2DExpression |
class |
LocalMaximumFilter2DAlgorithm
Wrapper around
RankFilters |
class |
LocalMaximumFilter3DAlgorithm
Wrapper around
RankFilters |
class |
LocalMinimumFilter2DAlgorithm
Wrapper around
RankFilters |
class |
LocalMinimumFilter3DAlgorithm
Wrapper around
RankFilters |
class |
LocalVarianceFilter2DAlgorithm
Wrapper around
RankFilters |
class |
LocalVarianceFilter3DAlgorithm
Wrapper around
RankFilters |
class |
RegionalMaxima2DAlgorithm |
class |
RegionalMaxima3DAlgorithm |
class |
RegionalMinima2DAlgorithm |
class |
RegionalMinima3DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ChangeImageMetadataFromExpressionsAlgorithm
Wrapper around
RoiManager |
class |
ExtractImageMetadataAlgorithm |
class |
RemoveImageMetadataAlgorithm |
class |
SetImageMetadataFromTableAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
DataToPreviewAlgorithm |
class |
RenderJIPipeProjectAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
InputImagesToMontage
Deprecated.
|
class |
InputImagesToMontage2 |
class |
MontageToStackAlgorithm
Implementation of
MontageMaker |
class |
StackToMontage2Algorithm
Implementation of
MontageMaker |
class |
StackToMontageAlgorithm
Deprecated.
|
| Modifier and Type | Class and Description |
|---|---|
class |
FindHoles2DAlgorithm |
class |
GrayscaleAttributeFiltering2DAlgorithm |
class |
GrayscaleAttributeFiltering3DAlgorithm |
class |
MorphologicalReconstruction2DAlgorithm |
class |
MorphologicalReconstruction3DAlgorithm |
class |
Morphology2DAlgorithm
Wrapper around
ImageProcessor |
class |
Morphology3DAlgorithm
Wrapper around
ImageProcessor |
class |
MorphologyBinary2DAlgorithm
Wrapper around
ImageProcessor |
class |
MorphologyFillHoles2DAlgorithm
Wrapper around
ImageProcessor |
class |
MorphologyInternalGradient2DAlgorithm
Wrapper around
ImageProcessor |
class |
MorphologyOutline2DAlgorithm
Wrapper around
ImageProcessor |
class |
MorphologySkeletonize2DAlgorithm
Wrapper around
ImageProcessor |
class |
MorphologySkeletonize3DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
AddNoise2DAlgorithm
Wrapper around
ImageProcessor |
class |
AddSaltAndPepperNoise2DAlgorithm
Wrapper around
ImageProcessor |
class |
DespeckleFilter2DAlgorithm
Wrapper around
RankFilters |
class |
RemoveOutliersFilter2DAlgorithm
Wrapper around
RankFilters |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateOMEWithMetadataAlgorithm |
class |
ExtractOMEROIAlgorithm |
class |
ExtractOMEXMLAlgorithm |
class |
OMEMetadataToTableAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
MSEBlockFlowAlgorithm
Adapted from
mpicbg.ij.plugin.MSEBlockFlow, as the methods there are all protected/private |
class |
MSEGaussianFlowAlgorithm
Adapted from
mpicbg.ij.plugin.MSEGaussianFlow, as the methods there are all protected/private |
class |
PMCCBlockFlowAlgorithm
Adapted from
mpicbg.ij.plugin.PMCCBlockFlow, as the methods there are all protected/private |
| Modifier and Type | Class and Description |
|---|---|
class |
ExtractOverlayAlgorithm |
class |
RemoveOverlayAlgorithm |
class |
RenderOverlayAlgorithm
Wrapper around
RoiDrawer |
class |
SetOverlayAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
SimpleImageRegistrationAlgorithm
Port of
Register_Virtual_Stack_MT |
| Modifier and Type | Class and Description |
|---|---|
class |
TurboRegRegistration2DReferencedAlgorithm
Port of
Register_Virtual_Stack_MT |
class |
TurboRegRegistration2DSingleAlgorithm
Port of
Register_Virtual_Stack_MT |
| Modifier and Type | Class and Description |
|---|---|
class |
CropToRoiAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
RoiPropertiesToAnnotationsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
AssembleExtractedROIAlgorithm |
class |
ExtractFromROIAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ExtractImageInRoiAlgorithm |
class |
GetRoiImageAlgorithm
Wrapper around
RoiManager |
class |
ROIToLabelsByNameAlgorithm |
class |
ROIToLabelsExpressionAlgorithm |
class |
RoiToMaskAlgorithm
Wrapper around
RoiManager |
class |
RoiToRGBAlgorithm
Wrapper around
RoiDrawer |
class |
UnreferencedRoiToMaskAlgorithm
Wrapper around
RoiManager |
class |
UnreferencedRoiToRGBAlgorithm
Wrapper around
RoiManager |
| Modifier and Type | Class and Description |
|---|---|
class |
DrawLineOvalRectangleRoiAlgorithm |
class |
DrawOvalRoiAlgorithm
Deprecated.
|
class |
DrawRectangleRoiAlgorithm
Deprecated.
|
class |
DrawScaleBarRoiAlgorithm |
class |
DrawTextRoiAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
FilterRoiByNameAlgorithm
Wrapper around
RoiManager |
class |
FilterROIByOverlapAlgorithm |
class |
FilterRoiByStatisticsAlgorithm
Wrapper around
RoiManager |
class |
FilterRoiByStatisticsScriptAlgorithm
Wrapper around
RoiManager |
class |
FilterROIListsAlgorithm |
class |
RemoveBorderRoisAlgorithm
Wrapper around
RoiManager |
class |
SliceROIListAlgorithm
Wrapper around
RoiManager |
| Modifier and Type | Class and Description |
|---|---|
class |
AppendRectangularRoiAlgorithm
Deprecated.
|
class |
DefineRectangularRoiAlgorithm
Deprecated.
|
class |
GenerateMissingRoiListsAlgorithm |
class |
MaskToRoiAlgorithm |
class |
ReferencedAppendRectangularRoiAlgorithm
Deprecated.
|
class |
ReferencedDefineRectangularRoiAlgorithm
Deprecated.
|
class |
TableToCircularROIAlgorithm
Wrapper around
RoiManager |
class |
TableToLineROIAlgorithm
Wrapper around
RoiManager |
class |
TableToPointROIAlgorithm
Wrapper around
RoiManager |
class |
TableToRectangularROIAlgorithm
Wrapper around
RoiManager |
class |
TableToTextROIAlgorithm
Wrapper around
RoiManager |
| Modifier and Type | Class and Description |
|---|---|
class |
CountROIAlgorithm |
class |
ExtractRoi2DRelationStatisticsAlgorithm |
class |
ExtractROIProfileAlgorithm |
class |
RoiStatisticsAlgorithm
Wrapper around
RoiManager |
| Modifier and Type | Class and Description |
|---|---|
class |
FilterAndMergeRoiByStatisticsScriptAlgorithm
Wrapper around
RoiManager |
class |
MergeRoiListsOrderedAlgorithm
Wrapper around
RoiManager |
class |
MergeRoiListsPairwiseOrAlgorithm
Wrapper around
RoiManager |
class |
MergeRoiListsUnorderedAlgorithm
Wrapper around
RoiManager |
| Modifier and Type | Class and Description |
|---|---|
class |
ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm |
class |
ChangeRoiPropertiesAlgorithm
Wrapper around
RoiManager |
class |
ChangeRoiPropertiesFromAnnotationsAlgorithm
Wrapper around
RoiManager |
class |
ChangeRoiPropertiesFromExpressionsAlgorithm
Wrapper around
RoiManager |
class |
ChangeRoiPropertiesFromTableAlgorithm
Wrapper around
RoiManager |
class |
ColorRoiByNameAlgorithm |
class |
ColorRoiByStatisticsAlgorithm
Wrapper around
RoiManager |
class |
CropRoiListAlgorithm
Wrapper around
RoiManager |
class |
EnlargeShrinkRoiAlgorithm
Wrapper around
RoiManager |
class |
FlattenRoiAlgorithm
Wrapper around
RoiManager |
class |
OutlineRoiAlgorithm
Wrapper around
RoiManager |
class |
OutlineRoiConcaveHullMoreiraSantosAlgorithm |
class |
ReorderRoiDimensionsAlgorithm
Algorithm that reorders Hyperstack dimensions
|
class |
RoiCalculatorAlgorithm
Wrapper around
RoiManager |
class |
RoiFloodFillAlgorithm
Wrapper around
RoiManager |
class |
RoiToCentroidAlgorithm
Wrapper around
RoiManager |
class |
RotateRoiAlgorithm
Wrapper around
RoiManager |
class |
ScaleRoiAlgorithm
Wrapper around
RoiManager |
class |
SetRoiImageAlgorithm
Wrapper around
RoiManager |
class |
UnsetRoiImageAlgorithm
Wrapper around
RoiManager |
| Modifier and Type | Class and Description |
|---|---|
class |
ExtractROIMetadataAlgorithm |
class |
RemoveROIMetadataAlgorithm |
class |
SetRoiMetadataByStatisticsAlgorithm
Wrapper around
RoiManager |
class |
SetROIMetadataFromTableAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
RegisterRoiToImageByBrightnessAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
SortAndExtractRoiByStatisticsAlgorithm
Deprecated.
|
class |
SortAndExtractRoiByStatisticsAlgorithm2
Wrapper around
RoiManager |
class |
SortRoiListByExpressionsAndMeasurementsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ExplodeRoiAlgorithm
Wrapper around
RoiManager |
class |
SplitRoiAlgorithm
Wrapper around
RoiManager |
class |
SplitRoiConnectedComponentsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ClassicWatershedSegmentationAlgorithm |
class |
RidgeDetector2DAlgorithm |
class |
SeededWatershedSegmentationAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
LaplacianSharpen2DAlgorithm
Wrapper around
ImageProcessor |
| Modifier and Type | Class and Description |
|---|---|
class |
AverageKeyValueThresholdStatisticsGenerator |
class |
FastKeyValueThresholdStatisticsGenerator |
class |
HistogramGenerator
Algorithm that generates
ResultsTableData as histogram |
class |
KeyValueAveragesGenerator |
class |
KeyValueHistogramGenerator |
class |
KeyValueThresholdPartitionAveragesGenerator |
class |
KeyValueThresholdPartitionGenerator |
class |
KeyValueThresholdStatisticsGenerator |
| Modifier and Type | Class and Description |
|---|---|
class |
AutoThreshold2DAlgorithm
Thresholding node that thresholds via an auto threshold
|
class |
BrightSpotsSegmentation2DAlgorithm
Applies Bright spots segmentation
|
class |
CustomAutoThreshold2D16UAlgorithm
Thresholding node that thresholds via an auto threshold
|
class |
CustomAutoThreshold2D16Uv2Algorithm
Thresholding node that thresholds via an auto threshold
|
class |
CustomAutoThreshold2D32FAlgorithm
Thresholding node that thresholds via an auto threshold
|
class |
CustomAutoThreshold2D32Fv2Algorithm
Thresholding node that thresholds via an auto threshold
|
class |
CustomAutoThreshold2D8UAlgorithm
Thresholding node that thresholds via an auto threshold
|
class |
CustomAutoThreshold2D8Uv2Algorithm
Thresholding node that thresholds via an auto threshold
|
class |
HessianSegmentation2DAlgorithm
Segments using a Hessian
|
class |
InternalGradientSegmentation2DAlgorithm
Internal gradient segmenter
|
class |
ManualThreshold16U2DAlgorithm
Wrapper around
ImageProcessor |
class |
ManualThreshold32F2DAlgorithm
Wrapper around
ImageProcessor |
class |
ManualThreshold8U2DAlgorithm
Wrapper around
ImageProcessor |
class |
PercentileThreshold8U2DAlgorithm
Wrapper around
ImageProcessor |
class |
ThresholdByAnnotation2DAlgorithm
Wrapper around
ImageProcessor |
| Modifier and Type | Class and Description |
|---|---|
class |
ColorThresholdExpression2D |
class |
ManualHSBThreshold2DAlgorithm |
class |
ManualLABThreshold2DAlgorithm |
class |
ManualRGBThreshold2DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
IterativeThresholdByROIStatistics2DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
BernsenLocalAutoThreshold2DAlgorithm
Segmenter node that thresholds via an auto threshold
Based on code from
fiji.threshold.Auto_Local_Threshold |
class |
ContrastLocalAutoThreshold2DAlgorithm
Segmenter node that thresholds via an auto threshold
Based on code from
fiji.threshold.Auto_Local_Threshold |
class |
LocalAutoThreshold2DAlgorithm
Segmenter node that thresholds via an auto threshold
Based on code from
fiji.threshold.Auto_Local_Threshold |
class |
NiblackLocalAutoThreshold2DAlgorithm
Segmenter node that thresholds via an auto threshold
Based on code from
fiji.threshold.Auto_Local_Threshold |
class |
PhansalkarLocalAutoThreshold2DAlgorithm
Segmenter node that thresholds via an auto threshold
Based on code from
fiji.threshold.Auto_Local_Threshold |
class |
SauvolaLocalAutoThreshold2DAlgorithm
Segmenter node that thresholds via an auto threshold
Based on code from
fiji.threshold.Auto_Local_Threshold |
| Modifier and Type | Class and Description |
|---|---|
class |
AddBorder2DAlgorithm |
class |
LineMirror2DFromExpressionsAlgorithm |
class |
LineMirror2DFromRoiAlgorithm |
class |
MergeImagesAlgorithm |
class |
TileImage2DAlgorithm
Deprecated.
|
class |
TileImage2Dv2Algorithm |
class |
TransformCrop2DAlgorithm
Wrapper around
ImageProcessor |
class |
TransformEqualCanvasSize2DAlgorithm |
class |
TransformEqualizeDimensionsAlgorithm |
class |
TransformEqualizeDimensionsToMaxAlgorithm |
class |
TransformExpandCanvas2DAlgorithm |
class |
TransformFlip2DAlgorithm
Wrapper around
ImageProcessor |
class |
TransformRotate2DAlgorithm
Wrapper around
ImageProcessor |
class |
TransformRotateFree2DAlgorithm
Wrapper around
ImageProcessor |
class |
TransformScale2DAlgorithm
Wrapper around
ImageProcessor |
class |
TransformScale3DAlgorithm
Wrapper around
ImageProcessor |
class |
TransformSetHyperstackDimensionsAlgorithm |
class |
UnTileImage2DAlgorithm |
class |
Warp2DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
HyperstackDimensionPairParameter |
static class |
HyperstackDimensionPairParameter.List |
| Modifier and Type | Class and Description |
|---|---|
class |
SimpleImageAndRoiIteratingAlgorithm
Image processor algorithm that optionally takes a ROI
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImageJDataTypesPlugin
Provides ImageJ data types
|
| Modifier and Type | Class and Description |
|---|---|
class |
ApplyDisplayContrastAlgorithm |
class |
DisplayRangeCalibrationAlgorithm |
class |
ExtractRoi2DFromOMEImageAlgorithm
Loads ROI data from a file via IJ.openFile()
|
class |
SetBioFormatsExporterSettings |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateDataWithImagePropertiesAlgorithm
Adds data annotations that contain the image properties
|
class |
BioFormatsAnnotatorAlgorithm
BioFormats importer wrapper
|
class |
ImagePropertiesToAnnotationAlgorithm
Adds data annotations that contain the image properties
|
| Modifier and Type | Class and Description |
|---|---|
class |
ColorSpaceConverterAlgorithm |
class |
ToHSBColorSpaceConverterAlgorithm |
class |
ToLABColorSpaceConverterAlgorithm |
class |
ToRGBColorSpaceConverterAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
BioFormatsExporter2Algorithm |
class |
BioFormatsExporterAlgorithm
Deprecated.
|
class |
BioFormatsImporterAlgorithm
BioFormats importer wrapper
|
class |
ExportImagePlusAsOMEZARRAlgorithm |
class |
ImportImageJSampleAlgorithm |
class |
ImportImagePlusAlgorithm
Loads an image data from a file via IJ.openFile()
|
class |
ImportLUTAsRGBFromFileAlgorithm |
class |
ImportOMEZARRFromURIAsImagePlusAlgorithm |
class |
ImportOMEZARRFromZipDirectoryAsImagePlusAlgorithm |
class |
ImportResultsTableAlgorithm
Imports
ResultsTableData from a file |
class |
ImportRoi2DAlgorithm
Loads ROI data from a file via IJ.openFile()
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImageTypeConverter
Converts ImageJ data type into each other
|
| Modifier and Type | Class and Description |
|---|---|
class |
MeasurementColumnSortOrder
A key-value pair parameter of
MeasurementColumn to SortOrder |
static class |
MeasurementColumnSortOrder.List
A list of
MeasurementColumnSortOrder |
| Modifier and Type | Class and Description |
|---|---|
class |
ImpPlugin
Python nodes
|
| Modifier and Type | Class and Description |
|---|---|
class |
ConvertImpImageToImagePlusAlgorithm |
class |
ExportImpImageAlgorithm |
class |
ImportImpImageAlgorithm |
class |
SetImpAlphaChannelAlgorithm |
class |
SplitImpAlphaChannelAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
JsonExtensionLoaderPlugin
Extension that loads
JIPipeJsonPlugin |
class |
JsonExtensionRegistrationTask
Registers a
JIPipeJsonPlugin |
| Modifier and Type | Class and Description |
|---|---|
class |
MultiParameterAlgorithmsPlugin
Extension that provides capabilities to run multiple parameters
|
class |
MultiParametersPlugin
Extension that provides capabilities to run multiple parameters
|
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotationsToParametersAlgorithm |
class |
ConvertParametersToTableAlgorithm |
class |
DefineParametersAlgorithm
Generates
ParametersData objects |
class |
DefineParametersFromGlobalParametersAlgorithm
Generates
ParametersData objects |
class |
DefineParametersFromTableAlgorithm |
class |
DefineParametersTableAlgorithm
Generates
ParametersData objects |
class |
ExtractParametersAlgorithm |
class |
GeneratedParameters
Encapsulates the generation of parameters
|
class |
GenerateParametersFromExpressionAlgorithm |
class |
MergeParametersAlgorithm |
class |
MultiplyParametersAlgorithm |
class |
ParametersToAnnotationsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
NapariPlugin |
| Modifier and Type | Class and Description |
|---|---|
class |
NodeTemplateBoxToolPlugin |
| Modifier and Type | Class and Description |
|---|---|
class |
OMEROCredentialsEnvironment |
static class |
OMEROCredentialsEnvironment.List |
class |
OMEROPlugin
Provides data types dor handling strings
|
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateOMERODatasetReferenceAlgorithm |
class |
AnnotateOMEROImageReferenceAlgorithm |
class |
AnnotateOMEROPlateReferenceAlgorithm |
class |
AnnotateOMEROProjectReferenceAlgorithm |
class |
AnnotateOMEROScreenReferenceAlgorithm |
class |
AnnotateOMEROWellReferenceAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
OMERODatasetReferenceDataSource |
class |
OMEROGroupReferenceDataSource |
class |
OMEROImageReferenceDataSource |
class |
OMEROPlateReferenceDataSource |
class |
OMEROProjectReferenceDataSource |
class |
OMEROScreenReferenceDataSource |
class |
OMEROWellReferenceDataSource |
| Modifier and Type | Class and Description |
|---|---|
class |
DownloadOMEROImageAlgorithm |
class |
DownloadOMEROTableAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
OMEROCreateDatasetAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
OMEROListDatasetImagesAlgorithm |
class |
OMEROListDatasetsAlgorithm |
class |
OMEROListGroupsAlgorithm |
class |
OMEROListPlatesAlgorithm |
class |
OMEROListProjectsAlgorithm |
class |
OMEROListScreensAlgorithm |
class |
OMEROListWellImagesAlgorithm |
class |
OMEROListWellsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
UploadOMEROImageToDatasetAlgorithm |
class |
UploadOMEROTableAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
OmniposePlugin |
| Modifier and Type | Class and Description |
|---|---|
class |
ImportPretrainedOmnipose0ModelAlgorithm |
class |
Omnipose0InferenceAlgorithm |
class |
Omnipose0TrainingAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
LegacyOmnipose0InferenceAlgorithm
Deprecated.
|
class |
LegacyOmnipose0TrainingAlgorithm
Deprecated.
|
| Modifier and Type | Class and Description |
|---|---|
class |
PretrainedOmnipose0ModelList |
| Modifier and Type | Class and Description |
|---|---|
class |
OpenCvPlugin
Python nodes
|
| Modifier and Type | Class and Description |
|---|---|
class |
ConvertDepthAlgorithm |
class |
ConvertTypeAlgorithm |
class |
InpaintingAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
BilateralFilterAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
GaborKernelGenerator |
class |
GaussianKernelGenerator |
| Modifier and Type | Class and Description |
|---|---|
class |
StandardParametersPlugin
Provides some standard parameters
|
| Modifier and Type | Class and Description |
|---|---|
class |
ListParameter<T>
A parameter that is a collection of another parameter type
|
| Modifier and Type | Class and Description |
|---|---|
class |
EnumParameterGenerator |
| Modifier and Type | Class and Description |
|---|---|
class |
FunctionParameter<I,P,O>
A parameter that allows to model a function with an input, an output, and parameters.
|
class |
StringPatternExtractionFunction
A function entry that applies pattern extraction to an
String |
static class |
StringPatternExtractionFunction.List
List of
StringPatternExtractionFunction |
| Modifier and Type | Class and Description |
|---|---|
class |
SlotMapParameterCollection
Parameter that holds a value for each data slot
|
| Modifier and Type | Class and Description |
|---|---|
class |
PairParameter<K,V>
Parameter equivalent of a map entry.
|
| Modifier and Type | Class and Description |
|---|---|
class |
ParameterCollectionList
A list of multiple
JIPipeParameterCollection items (internally JIPipeDynamicParameterCollection. |
| Modifier and Type | Class and Description |
|---|---|
class |
ColorListParameter |
| Modifier and Type | Class and Description |
|---|---|
class |
FileChooserBookmarkList |
class |
PathList
Collection of paths.
|
| Modifier and Type | Class and Description |
|---|---|
static class |
GraphNodeReferenceParameter.List |
class |
InputSlotMapParameterCollection
Parameter that holds a value for each data slot
|
class |
OutputSlotMapParameterCollection
Parameter that holds a value for each data slot
|
| Modifier and Type | Class and Description |
|---|---|
static class |
PluginCategoriesEnumParameter.List |
| Modifier and Type | Class and Description |
|---|---|
class |
StringPatternExtraction
A parameter that extracts a pattern from a string
|
static class |
StringPatternExtraction.List
A collection of multiple
StringPatternExtraction |
| Modifier and Type | Class and Description |
|---|---|
class |
NumberRangeParameterGenerator
Generator that creates instances of
Number. |
static class |
StringOrDouble.List
A collection of multiple
StringOrDouble
The filters are connected via "OR" |
| Modifier and Type | Class and Description |
|---|---|
class |
DoubleList
A list of
Double |
class |
FloatList
A list of
Float |
class |
IntegerList
A list of
Integer |
class |
LongList
A list of
Long |
class |
StringList
A list of
String |
| Modifier and Type | Class and Description |
|---|---|
class |
OptionalDataAnnotationNameParameter
Parameter used for creating annotations
|
class |
OptionalTextAnnotationNameParameter
Parameter used for creating annotations
|
| Modifier and Type | Class and Description |
|---|---|
static class |
Vector2dParameter.List |
static class |
Vector2iParameter.List |
static class |
Vector3dParameter.List |
static class |
Vector3iParameter.List |
| Modifier and Type | Class and Description |
|---|---|
class |
ImageJDataExporterRef
Helper to allow easy serialization of
ImageJDataExporter references |
class |
ImageJDataExportOperationRef
Helper to allow easy serialization of
ImageJDataExporter references |
class |
ImageJDataImporterRef
Helper to allow easy serialization of
ImageJDataImporter references |
class |
ImageJDataImportOperationRef
Helper to allow easy serialization of
ImageJDataImporter references |
class |
JIPipeDataInfoRef
Helper to allow easy serialization of
JIPipeDataInfo references |
class |
JIPipeNodeInfoRef
A parameter that holds a reference to an
JIPipeNodeInfo |
class |
JIPipeParameterTypeInfoRef
A parameter that holds a reference to an
JIPipeParameterTypeInfo |
| Modifier and Type | Class and Description |
|---|---|
static class |
FixedMargin.List
List parameter of
FixedMargin |
static class |
InnerMargin.List
List parameter of
InnerMargin |
static class |
Margin.List
List parameter of
Margin |
class |
RectangleList
List parameter of
Rectangle |
| Modifier and Type | Class and Description |
|---|---|
class |
PipelineRenderPlugin
Extension containing some additional tools
|
| Modifier and Type | Class and Description |
|---|---|
class |
PlotsPlugin
Provides a standard selection of plots
|
| Modifier and Type | Class and Description |
|---|---|
class |
BarBoxAndWhiskerCategoryJFreeChartPlotData
A box and whisker plot
Series table columns: Value (Double), Category (String), Group (String)
Multiple series: Yes
|
class |
BarCategoryJFreeChartPlotData
A bar category plot
Series table columns: Value (Double), Category (String), Group (String)
Multiple series: No
|
class |
BarStatisticalCategoryJFreeChartPlotData
A statistical bar category plot
Series table columns: Value (Double), Category (String), Group (String)
Multiple series: No
|
class |
BoxAndWhiskerCategoryJFreeChartPlotData
Contains data for box and whisker category plots category plots.
|
class |
CategoryJFreeChartPlotData
Contains data for category plots.
|
class |
HistogramJFreeChartPlotData
Contains data to generate a histogram plot
Series table colums: Value (Numeric)
Multiple series: Yes
|
class |
JFreeChartPlotData
Contains all necessary data to generate a plot
|
class |
LineCategoryJFreeChartPlotData
Generates a bar category plot
Series table columns: Value (Double), Category (String), Group (String)
Multiple series: No
|
class |
LineStatisticalCategoryJFreeChartPlotData
Generates a bar category plot
Series table columns: Value (Double), Category (String), Group (String)
Multiple series: No
|
class |
LineXYJFreeChartPlotData
Generates a bar category plot
Series table columns: X (Double), Y (Double)
Multiple series: Yes
|
class |
Pie2DJFreeChartPlotData
Generates a Pie chart
Series table columns: Amount (Double), Category (String)
Multiple series: No
|
class |
Pie3DJFreeChartPlotData
Generates a Pie chart
Series table columns: Amount (Double), Category (String)
Multiple series: No
|
class |
PieJFreeChartPlotData
Contains data for pie plots.
|
class |
ScatterXYJFreeChartPlotData
A scatter XY plot
Series table columns: X (Double), Y (Double)
Multiple series: Yes
|
class |
StackedBarCategoryJFreeChartPlotData
A stacked bar plot
Series table columns: Value (Double), Category (String), Group (String)
Multiple series: No
|
class |
StatisticalCategoryJFreeChartPlotData
Contains data for statistical plots.
|
class |
XYJFreeChartPlotData
Contains data for XY plots
Any plot has following columns:
X (Double), Y (Double)
|
| Modifier and Type | Class and Description |
|---|---|
class |
PlotTables2Algorithm
Algorithm that creates
JFreeChartPlotData from ResultsTableData
This is an improved version of PlotTables2Algorithm that is linked directly to a specific plot |
class |
PlotTablesAlgorithm
Deprecated.
Instead, the new dynamically generated plotting should be utilized
|
| Modifier and Type | Class and Description |
|---|---|
class |
ProcessEnvironment |
static class |
ProcessEnvironment.List
A list of
ProcessEnvironment |
class |
ProcessesPlugin |
| Modifier and Type | Class and Description |
|---|---|
class |
CorePythonPlugin
Python nodes
|
class |
PythonEnvironment
Parameter that describes a Python environment
|
static class |
PythonEnvironment.List
A list of
PythonEnvironment |
class |
PythonPackageLibraryEnvironment
An environment-like type that points to a package
|
class |
PythonPlugin
Python nodes
|
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipePythonAdapterLibraryEnvironment
Environment that supplies the JIPipe Python adapter library
|
static class |
JIPipePythonAdapterLibraryEnvironment.List
A list of
JIPipePythonAdapterLibraryEnvironment |
| Modifier and Type | Class and Description |
|---|---|
class |
IteratingJythonScriptAlgorithm
An algorithm that allows to run Python code
|
class |
JythonScriptAlgorithm
An algorithm that allows to run Python code
|
class |
MergingJythonScriptAlgorithm
An algorithm that allows to run Python code
|
class |
SimpleIteratingJythonScriptAlgorithm
An algorithm that allows to run Python code
|
| Modifier and Type | Class and Description |
|---|---|
class |
IteratingPythonScriptAlgorithm
An algorithm that allows to run Python code
|
class |
MergingPythonScriptAlgorithm
An algorithm that allows to run Python code
|
class |
PythonScriptAlgorithm
An algorithm that allows to run Python code
|
| Modifier and Type | Class and Description |
|---|---|
class |
REnvironment |
static class |
REnvironment.List
A list of
REnvironment |
class |
RPlugin |
| Modifier and Type | Class and Description |
|---|---|
class |
ImportRDatasetAlgorithm |
class |
IteratingRScriptAlgorithm |
class |
MergingRScriptAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
Scene3DPlugin |
| Modifier and Type | Class and Description |
|---|---|
class |
CreateLineMeshAlgorithm |
class |
CreateSphereMeshAlgorithm |
class |
ExportScene3DToColladaAlgorithm
Deprecated.
|
class |
ExportScene3DToColladaAlgorithm2 |
class |
GroupSceneAlgorithm |
class |
MaskTo3DMeshAlgorithm |
class |
MergeScenesAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeDefaultCacheDisplayApplicationSettings
A dynamic settings sheet that lets users select the default cache display
|
class |
JIPipeDefaultResultImporterApplicationSettings
A dynamic settings sheet that lets users select the default importer
|
static class |
JIPipeDownloadsApplicationSettings.DownloadEnvironment |
class |
StandardSettingsPlugin
Extension that provides all JIPipe included settings sheets
|
| Modifier and Type | Class and Description |
|---|---|
class |
StringsPlugin
Provides data types dor handling strings
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImportJsonAlgorithm |
class |
ImportStringAlgorithm |
class |
ImportXMLAlgorithm |
class |
StringDefinitionDataSource |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateWithJsonDataAlgorithm |
class |
ExtractJsonDataAsTableAlgorithm |
class |
ExtractTextFromJsonAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateWithTextDataAlgorithm |
class |
ProcessTextDataAlgorithm |
class |
TableToCSVTextAlgorithm |
class |
TextDataToTableAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateWithXPathDataAlgorithm |
class |
ExtractTextFromXMLAlgorithm |
class |
ExtractXPathDataAsTableAlgorithm |
class |
PrettifyXMLAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
TablesPlugin
Standard set of table operations
|
| Modifier and Type | Class and Description |
|---|---|
class |
DefineTablesAlgorithm
Algorithm that annotates all data with the same annotation
|
class |
GenerateColumnAlgorithm
Algorithm that adds or replaces a column by a generated value
|
class |
GenerateTableFromExpressionAlgorithm
Algorithm that adds or replaces a column by a generated value
|
class |
IntegrateColumnsAlgorithm
Algorithm that integrates columns
|
class |
ModifyAndMergeTablesScript
Algorithm that annotates all data with the same annotation
|
class |
ModifyTableColumnNamesAlgorithm |
class |
ModifyTablesScript
Algorithm that annotates all data with the same annotation
|
class |
TablesFromScript
Algorithm that annotates all data with the same annotation
|
| Modifier and Type | Class and Description |
|---|---|
class |
AddAnnotationColumnsAlgorithm
Algorithm that integrates columns
|
class |
AnnotateByTablePropertiesAlgorithm |
class |
AnnotateDataWithTableValues |
class |
ConvertAnnotationTableToAnnotatedTables
Algorithm that integrates columns
|
| Modifier and Type | Class and Description |
|---|---|
class |
ApplyExpressionToColumnsAlgorithm
Deprecated.
|
class |
ApplyExpressionToTableByColumnAlgorithm
Algorithm that integrates columns
|
class |
ColumnsToAnnotationsAlgorithm |
class |
ColumnToNumericAlgorithm
Algorithm that removes columns
|
class |
ColumnToStringAlgorithm
Algorithm that removes columns
|
class |
ConvertColumnsAlgorithm
Algorithm that integrates columns
|
class |
RemoveColumnAlgorithm
Algorithm that removes columns
|
class |
RenameSingleColumnsAlgorithm
Algorithm that removes columns
|
class |
RenameTableColumns2Algorithm
Algorithm that removes columns
|
class |
RenameTableColumnsAlgorithm
Deprecated.
|
class |
RenameTableColumnsToAnnotationAlgorithm
Algorithm that removes columns
|
class |
SortTableColumnsAlgorithm
Algorithm that integrates columns
|
| Modifier and Type | Class and Description |
|---|---|
class |
FilterTableRowsAlgorithm
Algorithm that integrates columns
|
class |
FilterTablesAlgorithm
Algorithm that integrates columns
|
class |
SliceTableRowsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
MergeColumnsAlgorithm
Algorithm that integrates columns
|
class |
MergeTableColumnsSimpleAlgorithm
Algorithm that integrates columns
|
class |
MergeTableColumnsSupplementAlgorithm
Algorithm that integrates columns
|
class |
MergeTableColumnsSupplementMergingAlgorithm
Algorithm that integrates columns
|
class |
MergeTableRowsAlgorithm
Algorithm that integrates columns
|
| Modifier and Type | Class and Description |
|---|---|
class |
AddMissingRowsInSeriesAlgorithm |
class |
ApplyExpressionPerRowAlgorithm
Deprecated.
|
class |
ApplyExpressionPerRowAlgorithm2 |
class |
SortTableRowsAlgorithm
Algorithm that integrates columns
|
| Modifier and Type | Class and Description |
|---|---|
class |
SplitTableByColumnsAlgorithm
Algorithm that integrates columns
|
class |
SplitTableIntoColumnsAlgorithm
Algorithm that integrates columns
|
class |
SplitTableIntoRowsAlgorithm
Algorithm that integrates columns
|
| Modifier and Type | Class and Description |
|---|---|
class |
DBSCANClusteringAlgorithm |
class |
FuzzyKMeansClusteringAlgorithm |
class |
KMeansClusteringAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ApplyExpressionPerLabelAlgorithm |
class |
MeltTableAlgorithm
Algorithm that integrates columns
|
class |
TableToHistogram2Algorithm |
class |
TableToHistogramAlgorithm
Deprecated.
|
class |
UnMeltTableAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ConvertingTableColumnProcessorParameterList |
class |
ExpressionTableColumnGeneratorProcessorParameterList |
class |
ExpressionTableColumnProcessorParameterList |
class |
IntegratingTableColumnProcessorParameterList |
class |
ResultsTableDataList
A list of
ResultsTableData |
class |
TableColumnGeneratorProcessorParameterList |
| Modifier and Type | Class and Description |
|---|---|
class |
TableColumnGeneratorParameter
A parameter that allows the user to setup a table column generator
|
| Modifier and Type | Class and Description |
|---|---|
class |
ConvertingTableColumnProcessorParameter
A parameter that models processing an input column via an conversion function
and generating an output column
|
class |
ExpressionTableColumnGeneratorProcessor
Processor-like parameter that maps a column generator to a string
|
class |
ExpressionTableColumnProcessorParameter
A parameter that models processing an input column via an conversion function
and generating an output column
|
class |
IntegratingTableColumnProcessorParameter
A parameter that models processing an input column via an integration function
and generating an output column
|
class |
TableColumnGeneratorProcessor
Processor-like parameter that maps a column generator to a string
|
| Modifier and Type | Class and Description |
|---|---|
class |
ToolsPlugin
Extension containing some additional tools
|
| Modifier and Type | Class and Description |
|---|---|
class |
UtilitiesPlugin |
| Modifier and Type | Class and Description |
|---|---|
class |
ConverterAlgorithm
Algorithm that converts any type to any other type
|
class |
DataSlicer |
class |
DuplicateDataAlgorithm |
class |
ImportJIPipeSlotFolderAlgorithm |
class |
IterationStepSlicer |
class |
RunExpressionAlgorithm |
class |
SelectDataTableRowsAlgorithm |
class |
SleepAlgorithm |
class |
SortRowsByAnnotationsAlgorithm |
class |
SortRowsByExpressionAlgorithm |
class |
ToDataStringAlgorithm |
class |
UsePlaceholderForMissingDataAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateWithDataTableProperties |
class |
ExtractTableAlgorithm |
class |
MergeDataToTableAlgorithm |
class |
PullDataTableAnnotations |
class |
PushDataTableAnnotations |
| Modifier and Type | Class and Description |
|---|---|
class |
DistributeDataRandomlyByCountAlgorithm |
class |
DistributeDataRandomlyByPercentageAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
CrasherAlgorithm |
class |
MultiIterationStepCheckerAlgorithm |
class |
SingleIterationStepCheckerAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
GetJIPipeSlotFolderAlgorithm |
class |
JIPipeProjectParameterDefinition |
class |
PathsToJIPipeProjectParametersAlgorithm |
class |
RunJIPipeProjectAlgorithm
Runs a JIPipe project
|
| Modifier and Type | Class and Description |
|---|---|
class |
RunProcessIteratingAlgorithm |
class |
RunProcessMergingAlgorithm |
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