| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeImageJUpdateSiteDependency
A dependency that points to an ImageJ update site.
|
class |
JIPipeJsonPlugin
A JSON-serializable extension
|
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeAuthorMetadata
Models an author with affiliations
|
class |
JIPipeNodeTemplate
Contains the JSON data of a node that can be created by a user for sharing
An intermediate between copying a node and a proper plugin.
|
class |
JIPipeStandardMetadata
JSON-serializable project metadata
|
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeDataByMetadataExporter
Class that exports data based on metadata
|
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeArtifact |
class |
JIPipeArtifactRepositoryReference |
class |
JIPipeLocalArtifact |
class |
JIPipeRemoteArtifact |
| Modifier and Type | Class and Description |
|---|---|
class |
IOInterfaceAlgorithm
Algorithm that passes the input to the output
|
class |
JIPipeProjectCompartment
A project compartment.
|
class |
JIPipeProjectCompartmentOutput
A graph compartment output
Transfers data 1:1 from input to output
|
| Modifier and Type | Method and Description |
|---|---|
Map<String,JIPipeParameterCollection> |
JIPipeProjectCompartment.getChildParameterCollections() |
| Modifier and Type | Class and Description |
|---|---|
class |
ImageJDataExportOperation
Combines a
ImageJDataExporter with its appropriate parameters. |
class |
ImageJDataImportOperation
Runs a
ImageJDataImporter import operation. |
class |
ImageJExportParameters
Describes how data should be exported into ImageJ
|
class |
ImageJImportParameters
Describes how data should be imported into ImageJ
|
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeDataSlotInfo
Defines an
JIPipeGraphNode data slot. |
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeSerializedParameterCollectionData
A base class for
JIPipeData that is serialized from/to JSON for convenience
Only valid JIPipeParameter definitions are stored. |
| Modifier and Type | Interface and Description |
|---|---|
interface |
JIPipeExternalEnvironmentSettings
A settings page that contains basic settings for all external environments.
|
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeArtifactEnvironment
An environment that can be filled with an artifact
|
class |
JIPipeEnvironment
Defines an environment
|
class |
JIPipeProcessArtifactEnvironment
An artifact environment that points at an executable
|
| Modifier and Type | Class and Description |
|---|---|
class |
GraphWrapperAlgorithmInput |
class |
GraphWrapperAlgorithmOutput |
class |
JIPipeGraphWrapperAlgorithm
An algorithm that wraps another algorithm graph
|
class |
JIPipeNodeGroup
A sub-graph algorithm that can be defined by a user
|
class |
JsonAlgorithm
An algorithm that was imported from a Json extension.
|
class |
JsonNodeInfo
Info of a
JIPipeGraphWrapperAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
Map<String,JIPipeParameterCollection> |
JsonAlgorithm.getChildParameterCollections() |
Map<String,JIPipeParameterCollection> |
JIPipeNodeGroup.getChildParameterCollections() |
| Modifier and Type | Method and Description |
|---|---|
boolean |
JsonAlgorithm.isParameterUIVisible(JIPipeParameterTree tree,
JIPipeParameterCollection subParameter) |
boolean |
JIPipeNodeGroup.isParameterUIVisible(JIPipeParameterTree tree,
JIPipeParameterCollection subParameter) |
| Modifier and Type | Class and Description |
|---|---|
class |
GraphNodeParameterReference
References a parameter in a graph
|
class |
GraphNodeParameterReferenceAccessGroup
Contains
GraphNodeParameterReferenceAccess |
class |
GraphNodeParameterReferenceAccessGroupList
Contains
GraphNodeParameterReferenceAccess |
class |
GraphNodeParameterReferenceGroup
A list of
GraphNodeParameterReference. |
class |
GraphNodeParameterReferenceGroupCollection
Contains a list of
GraphNodeParameterReferenceGroup and GraphNodeParameterCollectionReference
Stores references to parameters within an JIPipeGraph |
| Modifier and Type | Method and Description |
|---|---|
JIPipeParameterCollection |
GraphNodeParameterReferenceAccess.getSource() |
| Modifier and Type | Method and Description |
|---|---|
Map<String,JIPipeParameterCollection> |
GraphNodeParameterReferenceAccessGroupList.getChildParameterCollections() |
| Constructor and Description |
|---|
GraphNodeParameterReferenceAccess(GraphNodeParameterReference reference,
JIPipeParameterTree tree,
JIPipeParameterCollection alternativeSource,
boolean persistent)
Creates a new instance
|
| Modifier and Type | Class and Description |
|---|---|
class |
LoopEndNode
Deprecated.
|
class |
LoopStartNode
Deprecated.
|
| Modifier and Type | Interface and Description |
|---|---|
interface |
JIPipeAdaptiveParametersAlgorithm
An algorithm that has support for adaptive parameters
|
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeAdaptiveParameterSettings
Settings class that allows users to generate expressions with adaptive parameters
|
class |
JIPipeAlgorithm
An
JIPipeGraphNode that contains a non-empty workload. |
class |
JIPipeGraphNode
A node is a set of input and output data slots, and a run() function
It is part of the
JIPipeGraph. |
| Modifier and Type | Method and Description |
|---|---|
boolean |
JIPipeAlgorithm.isParameterUIVisible(JIPipeParameterTree tree,
JIPipeParameterCollection subParameter) |
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeIteratingAlgorithm
An
JIPipeAlgorithm that iterates through each data row. |
class |
JIPipeIteratingAlgorithmIterationStepGenerationSettings
Groups iteration step generation settings
|
class |
JIPipeIteratingMissingDataGeneratorAlgorithm
An
JIPipeAlgorithm that passes incoming data to their corresponding output slots if the iteration step is complete
and otherwise runs a generator function that generates missing data items. |
class |
JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings
Groups iteration step generation settings
|
class |
JIPipeMergingAlgorithm
An
JIPipeAlgorithm that applies a similar algorithm to JIPipeIteratingAlgorithm, but does create JIPipeMultiIterationStep instead. |
class |
JIPipeMergingAlgorithmIterationStepGenerationSettings |
class |
JIPipeMissingDataGeneratorAlgorithm
An
JIPipeAlgorithm that passes incoming data to their corresponding output slots if the iteration step is complete
and otherwise runs a generator function that generates missing data items. |
class |
JIPipeMissingDataGeneratorIterationStepGenerationSettings
Groups iteration step generation settings
|
class |
JIPipeParameterlessSimpleIteratingAlgorithm
An
JIPipeAlgorithm that iterates through each data row. |
static class |
JIPipeParameterlessSimpleIteratingAlgorithm.IterationStepGenerationSettings |
class |
JIPipeParameterSlotAlgorithm
An
JIPipeAlgorithm that has an optional slot that allows to supply parameter data sets. |
class |
JIPipeParameterSlotAlgorithmSettings
Groups parameter slot settings
|
class |
JIPipeSimpleIteratingAlgorithm
An
JIPipeAlgorithm that iterates through each data row. |
class |
JIPipeSimpleIteratingAlgorithmIterationStepGenerationSettings |
class |
JIPipeSingleIterationAlgorithm
An
JIPipeAlgorithm that applies a single iteration with a iteration step containing all data. |
class |
JIPipeSingleIterationAlgorithmIterationStepGenerationSettings |
| Modifier and Type | Method and Description |
|---|---|
boolean |
JIPipeIteratingMissingDataGeneratorAlgorithm.isParameterUIVisible(JIPipeParameterTree tree,
JIPipeParameterCollection subParameter) |
boolean |
JIPipeSingleIterationAlgorithm.isParameterUIVisible(JIPipeParameterTree tree,
JIPipeParameterCollection subParameter) |
boolean |
JIPipeMergingAlgorithm.isParameterUIVisible(JIPipeParameterTree tree,
JIPipeParameterCollection subParameter) |
boolean |
JIPipeSimpleIteratingAlgorithm.isParameterUIVisible(JIPipeParameterTree tree,
JIPipeParameterCollection subParameter) |
boolean |
JIPipeParameterlessSimpleIteratingAlgorithm.isParameterUIVisible(JIPipeParameterTree tree,
JIPipeParameterCollection subParameter) |
boolean |
JIPipeIteratingAlgorithm.isParameterUIVisible(JIPipeParameterTree tree,
JIPipeParameterCollection subParameter) |
boolean |
JIPipeParameterSlotAlgorithm.isParameterUIVisible(JIPipeParameterTree tree,
JIPipeParameterCollection subParameter) |
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeAnnotationGraphNode
A node that is an annotation
Nodes of this type are rendered by
JIPipeDesktopAnnotationGraphNodeUI instead of JIPipeDesktopGraphNodeUI and have a custom size information |
| Modifier and Type | Interface and Description |
|---|---|
interface |
JIPipeIterationStepGenerationSettings |
| Modifier and Type | Interface and Description |
|---|---|
interface |
JIPipeCustomParameterCollection
If a class inherits from this interface, reflection-based parameter discovery is replaced by
the getCustomParameters() method result.
|
| Modifier and Type | Class and Description |
|---|---|
class |
AbstractJIPipeParameterCollection
JIPipeParameterCollection that implements the event emitters |
class |
DefaultJIPipeParameterGenerator
A default implementation of
JIPipeParameterGenerator that shows all parameters of this JIPipeParameterCollection
in a dialog before generating the data. |
class |
JIPipeDummyParameterCollection
A
JIPipeParameterCollection that stores exactly one value (an object)
This is used in conjunction with JIPipeManualParameterAccess |
class |
JIPipeDynamicParameterCollection
Holds a user-definable set of parameters
|
class |
JIPipeParameterTree
An
JIPipeParameterCollection that contains all the parameters of one or multiple
JIPipeParameterCollection instances in a traversed form. |
| Modifier and Type | Method and Description |
|---|---|
JIPipeParameterCollection |
JIPipeParameterTree.Node.getCollection() |
JIPipeParameterCollection |
JIPipeMutableParameterAccess.getSource() |
JIPipeParameterCollection |
JIPipeManualParameterAccess.getSource() |
JIPipeParameterCollection |
JIPipeParameterAccess.getSource()
Gets the object that holds the parameter
|
JIPipeParameterCollection |
JIPipeMultiParameterAccess.getSource() |
JIPipeParameterCollection |
JIPipeReflectionParameterAccess.getSource() |
| Modifier and Type | Method and Description |
|---|---|
default Map<String,JIPipeParameterCollection> |
JIPipeCustomParameterCollection.getChildParameterCollections()
Returns all sub-parameter collections
|
Map<JIPipeParameterCollection,List<JIPipeParameterAccess>> |
JIPipeParameterTree.getGroupedBySource()
Gets the parameters grouped by the source
|
Set<JIPipeParameterCollection> |
JIPipeParameterTree.getRegisteredSources() |
| Modifier and Type | Method and Description |
|---|---|
JIPipeParameterTree.Node |
JIPipeParameterTree.add(JIPipeParameterCollection child,
String key,
JIPipeParameterTree.Node parent)
Adds a new
JIPipeParameterCollection into this collection. |
static Map<String,JIPipeParameterAccess> |
JIPipeParameterTree.getParameters(JIPipeParameterCollection collection)
Accesses the parameters of a collection
|
boolean |
JIPipeParameterTree.getSourceCollapsed(JIPipeParameterCollection source)
Gets information about if the source is collapsed
|
SetJIPipeDocumentation |
JIPipeParameterTree.getSourceDocumentation(JIPipeParameterCollection source)
Gets source documentation
|
String |
JIPipeParameterTree.getSourceDocumentationName(JIPipeParameterCollection source)
Gets source name
|
String |
JIPipeParameterTree.getSourceKey(JIPipeParameterCollection collection)
Gets unique source key
|
JIPipeParameterTree.Node |
JIPipeParameterTree.getSourceNode(JIPipeParameterCollection collection)
Returns the node of a collection
|
int |
JIPipeParameterTree.getSourceUIOrder(JIPipeParameterCollection source)
Gets source UI order
|
int |
JIPipeParameterTree.getUISourceOrder(JIPipeParameterCollection source)
Gets source UI order
|
default boolean |
JIPipeParameterCollection.isParameterUIVisible(JIPipeParameterTree tree,
JIPipeParameterCollection subParameter)
Allows to override the visibility of sub-parameters inside the UI
|
boolean |
JIPipeParameterTree.isSourceHidden(JIPipeParameterCollection source)
Gets source visibility
|
void |
JIPipeParameterTree.merge(JIPipeParameterCollection source,
JIPipeParameterTree.Node target)
Merges parameters into a given node
|
JIPipeManualParameterAccess.Builder |
JIPipeManualParameterAccess.Builder.reflectionAccess(JIPipeParameterCollection source,
Method getter,
Method setter)
Sets up access via reflection
The field class is extracted from the getter return type
|
void |
AbstractJIPipeParameterCollection.registerSubParameter(JIPipeParameterCollection subParameter)
Registers a sub-parameter instance to pass
ParameterStructureChangedEvent via this algorithm's events |
void |
AbstractJIPipeParameterCollection.registerSubParameters(JIPipeParameterCollection... subParameters)
Registers a sub-parameter instance to pass
ParameterStructureChangedEvent via this algorithm's events |
void |
JIPipeParameterTree.Node.setCollection(JIPipeParameterCollection collection) |
void |
JIPipeMutableParameterAccess.setSource(JIPipeParameterCollection parameterHolder)
For internal usage only
|
JIPipeManualParameterAccess.Builder |
JIPipeManualParameterAccess.Builder.setSource(JIPipeParameterCollection source)
Sets the parameter source
|
void |
JIPipeReflectionParameterAccess.setSource(JIPipeParameterCollection source) |
void |
JIPipeParameterTree.setSourceDocumentation(JIPipeParameterCollection source,
JIPipeDocumentation documentation)
Sets source documentation
|
| Constructor and Description |
|---|
JIPipeMutableParameterAccess(JIPipeParameterCollection parameterHolder,
String key,
Class<?> fieldClass)
Creates a new instance
|
JIPipeParameterTree(JIPipeParameterCollection rootParameter)
Creates a new instance with a predefined root parameter
|
JIPipeParameterTree(JIPipeParameterCollection rootParameter,
int flags)
Creates a new instance with a predefined root parameter
|
Node(JIPipeParameterTree.Node parent,
JIPipeParameterCollection collection)
Creates a node
|
ParameterStructureChangedEvent(JIPipeParameterCollection source) |
ParameterUIChangedEvent(JIPipeParameterCollection source) |
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeProjectDirectories |
static class |
JIPipeProjectDirectories.DirectoryEntry |
class |
JIPipeProjectInfoParameters
Additional metadata that provides parameter references for
JIPipeDesktopProjectOverviewUI |
class |
JIPipeProjectMetadata
Metadata for a
JIPipeProject |
class |
JIPipeProjectPermissions |
| Modifier and Type | Method and Description |
|---|---|
Map<String,JIPipeParameterCollection> |
JIPipeProjectInfoParameters.getChildParameterCollections() |
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeGraphRunConfiguration
Settings for an
JIPipeGraphRun |
class |
JIPipeProjectRunSet |
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeRuntimePartition |
static class |
JIPipeRuntimePartition.ContinueOnFailureSettings |
static class |
JIPipeRuntimePartition.OutputSettings |
| Modifier and Type | Method and Description |
|---|---|
boolean |
JIPipeRuntimePartition.isParameterUIVisible(JIPipeParameterTree tree,
JIPipeParameterCollection subParameter) |
| Modifier and Type | Interface and Description |
|---|---|
interface |
JIPipeApplicationSettingsSheet
A settings sheet used for storing application-wide settings
|
interface |
JIPipeProjectSettingsSheet
A settings sheet used for storing project-related settings
|
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeDefaultApplicationsSettingsSheet
Application settings sheet of type
AbstractJIPipeParameterCollection, pre-configured to use standardized categories |
class |
JIPipeDefaultProjectSettingsSheet
Application settings sheet of type
AbstractJIPipeParameterCollection, pre-configured to use standardized categories |
| Constructor and Description |
|---|
ParameterValidationReportContext(JIPipeParameterCollection parameterCollection,
String name,
String key) |
ParameterValidationReportContext(JIPipeValidationReportContext parent,
JIPipeParameterCollection parameterCollection,
String name,
String key) |
| Modifier and Type | Method and Description |
|---|---|
JIPipeParameterCollection |
JIPipeDesktopParameterEditorUI.getParameterCollection()
Gets the object that holds the parameter
|
| Modifier and Type | Class and Description |
|---|---|
static class |
JIPipeDesktopProjectReportUI.ReportSettings |
| Modifier and Type | Class and Description |
|---|---|
static class |
JIPipeDesktopDataTableToFilesByMetadataExporterRun.Settings |
| Modifier and Type | Class and Description |
|---|---|
class |
JFreeChartPlotEditor
User interface for displaying and creating plots
|
class |
JIPipeDesktopPlotSeriesEditor
Constructs a series from a set of columns
|
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeDesktopQuickRunSettings
Settings for
JIPipeDesktopQuickRun |
| Modifier and Type | Class and Description |
|---|---|
static class |
JIPipeDesktopProjectSettingsUI.ProjectDirectoriesSettingsSheetWrapper |
static class |
JIPipeDesktopProjectSettingsUI.ProjectMetadataSettingsSheetWrapper |
static class |
JIPipeDesktopProjectSettingsUI.ProjectParametersSettingsSheetWrapper |
static class |
JIPipeDesktopProjectSettingsUI.ProjectPermissionsSettingsSheetWrapper |
static class |
JIPipeDesktopProjectSettingsUI.SettingsSheetWrapper |
| Modifier and Type | Method and Description |
|---|---|
JIPipeParameterCollection |
JIPipeDesktopProjectSettingsUI.SettingsSheetWrapper.getWrapped() |
| Modifier and Type | Method and Description |
|---|---|
boolean |
JIPipeDesktopProjectSettingsUI.ProjectMetadataSettingsSheetWrapper.isParameterUIVisible(JIPipeParameterTree tree,
JIPipeParameterCollection subParameter) |
boolean |
JIPipeDesktopProjectSettingsUI.ProjectPermissionsSettingsSheetWrapper.isParameterUIVisible(JIPipeParameterTree tree,
JIPipeParameterCollection subParameter) |
boolean |
JIPipeDesktopProjectSettingsUI.ProjectParametersSettingsSheetWrapper.isParameterUIVisible(JIPipeParameterTree tree,
JIPipeParameterCollection subParameter) |
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeDesktopMergedProjectSettings |
class |
JIPipeDesktopMergedProjectSettingsUserDirectories |
| Modifier and Type | Method and Description |
|---|---|
boolean |
JIPipeDesktopMergedProjectSettings.isParameterUIVisible(JIPipeParameterTree tree,
JIPipeParameterCollection subParameter) |
| Modifier and Type | Class and Description |
|---|---|
static class |
JIPipeDesktopAddParameterDialog.Settings |
| Modifier and Type | Method and Description |
|---|---|
JIPipeParameterCollection |
JIPipeDesktopParameterFormPanel.getDisplayedParameters() |
| Modifier and Type | Method and Description |
|---|---|
BiFunction<JIPipeParameterTree,JIPipeParameterCollection,Boolean> |
JIPipeDesktopParameterFormPanel.getCustomIsParameterCollectionVisible() |
| Modifier and Type | Method and Description |
|---|---|
void |
JIPipeDesktopParameterFormPanel.setDisplayedParameters(JIPipeParameterCollection displayedParameters) |
static boolean |
JIPipeDesktopParameterFormPanel.showDialog(JIPipeDesktopWorkbench workbench,
Component parent,
JIPipeParameterCollection parameterCollection,
MarkdownText defaultDocumentation,
String title,
int flags)
Shows a parameter collection inside a modal dialog
|
static boolean |
JIPipeDesktopParameterFormPanel.showDialog(JIPipeDesktopWorkbench workbench,
JIPipeParameterCollection parameterCollection,
MarkdownText defaultDocumentation,
String title,
int flags)
Shows a parameter collection inside a modal dialog
|
| Modifier and Type | Method and Description |
|---|---|
void |
JIPipeDesktopParameterFormPanel.setCustomIsParameterCollectionVisible(BiFunction<JIPipeParameterTree,JIPipeParameterCollection,Boolean> customIsParameterCollectionVisible) |
| Constructor and Description |
|---|
JIPipeDesktopParameterFormPanel(JIPipeDesktopWorkbench desktopWorkbench,
JIPipeParameterCollection displayedParameters,
JIPipeParameterTree parentTree,
MarkdownText documentation,
int flags) |
JIPipeDesktopParameterFormPanel(JIPipeDesktopWorkbench desktopWorkbench,
JIPipeParameterCollection displayedParameters,
MarkdownText documentation,
int flags) |
| Modifier and Type | Class and Description |
|---|---|
static class |
JIPipeDesktopDynamicParameterEditorDialog.ParameterEntry |
| Constructor and Description |
|---|
JIPipeDesktopParameterExplorerWindow(JIPipeDesktopWorkbench workbench,
JIPipeParameterCollection parameterCollection) |
| Modifier and Type | Class and Description |
|---|---|
static class |
JIPipeDesktopTabPane.DocumentTab
Encapsulates a tab
|
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateByExpression
Algorithm that annotates all data with the same annotation
|
class |
AnnotateByProjectPaths |
static class |
AnnotateByProjectPaths.Entry |
class |
AnnotateWithAnnotationTable
Algorithm that merges the annotations of all inputs and outputs the data with the shared annotations
|
class |
AnnotateWithData |
class |
AnnotateWithDataString
Generates annotations from filenames
|
class |
AnnotateWithSourceSlot
Generates annotations from filenames
|
class |
ConvertToAnnotationTable
Removes a specified annotation
|
class |
DataAnnotationToStringAnnotation |
class |
ExtractAndReplaceAnnotation
Generates annotations from filenames
|
class |
ExtractDataAnnotation |
class |
FilterByAnnotation
Algorithm that splits the input data by a specified annotation
|
class |
FilterByAnnotationIfElse
Algorithm that splits the input data by a specified annotation
|
class |
GenerateRandomUniqueAnnotation
Generates annotations from filenames
|
class |
GenerateUniqueAnnotation
Generates annotations from filenames
|
class |
MergeAnnotations
Algorithm that merges the annotations of all inputs and outputs the data with the shared annotations
|
class |
MergeDataSlots
Merges the input slot tables into one data slot
|
class |
ModifyAnnotationScript
Algorithm that annotates all data with the same annotation
|
class |
OverwriteAnnotations |
class |
RemoveAnnotationAlgorithm
Removes a specified annotation
|
class |
RemoveArrayAnnotationsAlgorithm |
class |
RemoveDataAnnotations |
class |
RemoveNAAnnotationColumnsAlgorithm |
class |
RenameAnnotation
Generates annotations from filenames
|
class |
RenameDataAnnotation
Generates annotations from filenames
|
class |
SetSingleAnnotation
Algorithm that annotates all data with the same annotation
|
class |
SimplifyAnnotationsAlgorithm |
class |
SplitByAnnotation
Algorithm that splits the input data by a specified annotation
|
class |
SplitByAnnotationScript
Algorithm that annotates all data with the same annotation
|
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotationTableFromFile
Imports
AnnotationTableData from a file |
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeArtifactApplicationSettings |
| Modifier and Type | Class and Description |
|---|---|
class |
Cellpose2PluginApplicationSettings |
class |
Cellpose3PluginApplicationSettings |
class |
CellposePluginProjectSettings |
| Modifier and Type | Class and Description |
|---|---|
class |
ImportCellposeModelFromFileAlgorithm |
class |
ImportCellposeSizeModelFromFileAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
Cellpose2SegmentationInferenceAlgorithm |
class |
Cellpose2TrainingAlgorithm |
class |
ImportPretrainedCellpose2ModelAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
Cellpose3DenoiseInferenceAlgorithm |
class |
Cellpose3DenoiseTrainingAlgorithm |
class |
Cellpose3SegmentationInferenceAlgorithm |
class |
Cellpose3SegmentationTrainingAlgorithm |
class |
ImportPretrainedCellpose3DenoiseModelAlgorithm |
class |
ImportPretrainedCellpose3SegmentationModelAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
Cellpose1InferenceAlgorithm
Deprecated.
New implementation will be CellposeAlgorithm2 that is based around the Cellpose CLI
|
class |
Cellpose1TrainingAlgorithm
Deprecated.
|
class |
ImportLegacyCellposeModelAlgorithm
Deprecated.
|
class |
ImportLegacyCellposeSizeModelAlgorithm
Deprecated.
|
class |
LegacyCellpose2InferenceAlgorithm
Deprecated.
|
class |
LegacyCellpose2TrainingAlgorithm
Deprecated.
|
| Modifier and Type | Class and Description |
|---|---|
class |
CellposeSegmentationEnhancementSettings_Old
Deprecated.
|
class |
CellposeSegmentationModelSettings_Old
Deprecated.
|
class |
CellposeSegmentationOutputSettings_Old
Deprecated.
Used by the old
Cellpose1InferenceAlgorithm |
class |
CellposeSegmentationPerformanceSettings_Old
Deprecated.
|
class |
CellposeSegmentationThresholdSettings_Old
Deprecated.
|
| Modifier and Type | Class and Description |
|---|---|
class |
Cellpose2ChannelSettings |
class |
Cellpose2GPUSettings |
class |
Cellpose2SegmentationOutputSettings |
class |
Cellpose2SegmentationThresholdSettings |
class |
Cellpose2SegmentationTweaksSettings |
class |
Cellpose2TrainingTweaksSettings |
| Modifier and Type | Class and Description |
|---|---|
class |
Cellpose3DenoiseTrainingNoiseSettings |
class |
Cellpose3DenoiseTrainingTweaksSettings |
class |
Cellpose3SegmentationTrainingTweaksSettings |
class |
Cellpose3SegmentationTweaksSettings |
| Modifier and Type | Class and Description |
|---|---|
class |
CLIJCommandNode |
class |
CLIJPluginApplicationSettings
Settings for CLIJ
|
static class |
CLIJPluginApplicationSettings.ContrastEnhancerSettings |
| Modifier and Type | Class and Description |
|---|---|
class |
Clij2ExecuteKernelIterating |
class |
Clij2ExecuteKernelSimpleIterating |
class |
Clij2PullAlgorithm |
class |
Clij2PushAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeCommentNode |
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeDataDirectoryEnvironment
An artifact environment that does no have any function workload, but only contains data
Points towards a directory
|
class |
JIPipeDataDirectoryEnvironmentApplicationSettings |
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeCustomExpressionVariablesParameter
A parameter collection that allows the creation of custom expression variables
Please note that the
JIPipeParameter annotation should have JIPipeParameterSerializationMode set to 'NestedCollection'. |
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeFilesystemPluginApplicationSettings
Settings for Filesystem.
|
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateWithPathProperties |
class |
AnnotationTableToPaths
Filters input files
|
class |
AnnotationToPath
Filters input files
|
class |
ConcatenateByParameter
Applies subfolder navigation to each input folder
|
class |
ConcatenatePaths
Applies subfolder navigation to each input folder
|
class |
ConvertDataToOutputPath
Applies subfolder navigation to each input folder
|
class |
ConvertToExportedPath |
class |
CopyPath
Applies subfolder navigation to each input folder
|
class |
CreateDirectory
Applies subfolder navigation to each input folder
|
class |
ExportData |
class |
ExportDataByParameter |
class |
ExportDataByParameter2 |
class |
ExportDataTable |
class |
ExportDataTableByParameter |
class |
ExtractFileName
Applies subfolder navigation to each input folder
|
class |
ExtractParent
Applies subfolder navigation to each input folder
|
class |
FilterPaths
Filters input files
|
class |
ImportDataRowFolder |
class |
ImportDataTableArchive |
class |
ImportDataTableDirectory |
class |
ListFiles
Algorithm that lists files in each folder
|
class |
ListSubfolders
Algorithms that lists the sub folders for each input folder
|
class |
ModifyPath |
class |
ModifyPathWithExpression |
class |
RelativizeByParameter
Applies subfolder navigation to each input folder
|
class |
RelativizePaths
Applies subfolder navigation to each input folder
|
class |
RenameByString
Applies subfolder navigation to each input folder
|
class |
SimpleFileAnnotationGenerator
Generates annotations from filenames
|
class |
SimpleFolderAnnotationGenerator
Algorithm that generates annotations from folder names
|
class |
SimplePathAnnotationGenerator
Algorithm that generates annotations from folder names
|
| Modifier and Type | Class and Description |
|---|---|
class |
ListZARRDirectoryZIPDatasetsAlgorithm |
class |
ListZARRURIDatasetsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
DownloadFilesDataSource |
class |
FileDataSource
Provides an input file
|
class |
FileListDataSource
Provides an input file
|
class |
FolderDataSource
Provides an input folder
|
class |
FolderListDataSource
Provides an input folder
|
class |
OutputFolderDataSource |
class |
PathDataSource
Provides an input file
|
class |
PathFromUserDataSource |
class |
PathListDataSource
Provides an input folder
|
class |
ProjectUserFolderDataSource |
class |
TemporaryFileDataSource |
class |
TemporaryFolderDataSource |
class |
URIListDataSource |
| Modifier and Type | Class and Description |
|---|---|
class |
FormGeneratorAlgorithm
A node base class that adds a new form element into the list of existing forms
|
class |
IteratingFormProcessorAlgorithm |
class |
MergingFormProcessorAlgorithm |
class |
SimpleFormGeneratorAlgorithm |
class |
SimpleIteratingFormProcessorAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
boolean |
IteratingFormProcessorAlgorithm.isParameterUIVisible(JIPipeParameterTree tree,
JIPipeParameterCollection subParameter) |
boolean |
SimpleIteratingFormProcessorAlgorithm.isParameterUIVisible(JIPipeParameterTree tree,
JIPipeParameterCollection subParameter) |
boolean |
MergingFormProcessorAlgorithm.isParameterUIVisible(JIPipeParameterTree tree,
JIPipeParameterCollection subParameter) |
| Modifier and Type | Class and Description |
|---|---|
class |
BooleanFormGeneratorAlgorithm |
class |
DoubleFormGeneratorAlgorithm |
class |
EnumFormGeneratorAlgorithm |
class |
GroupHeaderFormGeneratorAlgorithm |
class |
IntegerFormGeneratorAlgorithm |
class |
PathFormGeneratorAlgorithm |
class |
StringFormGeneratorAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
BooleanFormData |
class |
DoubleFormData |
class |
EnumFormData |
class |
FormData
Base class for any form data.
|
static class |
FormData.TabSettings |
class |
GroupHeaderFormData |
class |
IntegerFormData |
class |
ParameterFormData
FormData that is put into a JIPipeDesktopFormPanel |
class |
PathFormData |
class |
StringFormData |
| Modifier and Type | Class and Description |
|---|---|
class |
SingleAnnotationIOSettings
Settings group for single annotation I/O
|
| Modifier and Type | Class and Description |
|---|---|
class |
AbstractTextBoxAnnotationGraphNode |
static class |
AbstractTextBoxAnnotationGraphNode.TextLocationParameters |
static class |
AbstractTextBoxAnnotationGraphNode.TextRenderParameters |
class |
ArrowAnnotationGraphNode |
class |
GroupBoxAnnotationGraphNode |
class |
ImageBoxAnnotationGraphNode |
static class |
ImageBoxAnnotationGraphNode.ImageParameters |
class |
TextBoxAnnotationGraphNode |
static class |
TextBoxAnnotationGraphNode.ShapeParameters |
| Modifier and Type | Class and Description |
|---|---|
class |
ImageViewerUIROI3DDisplayApplicationSettings |
class |
Measurement3DSettings |
| Modifier and Type | Class and Description |
|---|---|
class |
ImportROI3DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
DistanceMap3DAlgorithm |
class |
ErodedVolumeFraction3DAlgorithm |
class |
Voronoi3DAlgorithm |
class |
Watershed3DSplittingAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
EdgeFilter3DAlgorithm |
class |
FindMaxima3DAlgorithm |
class |
SymmetryFilter3DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
Fast3DFiltersAdaptiveAlgorithm |
class |
Fast3DFiltersAlgorithm |
class |
Fast3DFiltersCloseAlgorithm |
class |
Fast3DFiltersLocalMaxAlgorithm |
class |
Fast3DFiltersMaxAlgorithm |
class |
Fast3DFiltersMeanAlgorithm |
class |
Fast3DFiltersMedianAlgorithm |
class |
Fast3DFiltersMinAlgorithm |
class |
Fast3DFiltersOpenAlgorithm |
class |
Fast3DFiltersSobelAlgorithm |
class |
Fast3DFiltersTopHatAlgorithm |
class |
Fast3DFiltersVarianceAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ExtractOverlay3DAlgorithm |
class |
RemoveOverlay3DAlgorithm |
class |
RenderOverlay3DAlgorithm
Wrapper around
RoiDrawer |
class |
SetOverlay3DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ExportROI3DAlgorithm
Deprecated.
|
class |
ExportROI3DAlgorithm2 |
| Modifier and Type | Class and Description |
|---|---|
class |
Roi2DToRoi3DConverterAlgorithm |
class |
Roi3DTo3DMeshAlgorithm |
class |
Roi3DToLabelsAlgorithm |
class |
Roi3DToMaskAlgorithm |
class |
Roi3DToRGBAlgorithm |
class |
Roi3DToRoi2DConverterAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
FilterRoi3DByOverlapAlgorithm |
static class |
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings |
class |
FilterRoi3DByStatisticsAlgorithm
Wrapper around
RoiManager |
class |
FilterRoi3DListsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
FindParticles3DAlgorithm |
class |
Roi3DFromLabelsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ExtractRoi3DRelationStatisticsAlgorithm |
class |
ExtractRoi3DStatisticsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
MergeROI3DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ExtractROI3DMetadataAlgorithm |
class |
RemoveROI3DMetadataAlgorithm |
class |
SetROI3DMetadataFromTableAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ChangeRoi3DPropertiesAlgorithm |
class |
ChangeRoi3DPropertiesFromExpressionsAlgorithm |
static class |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.MetadataEntry |
class |
ChangeRoi3DPropertiesFromTableAlgorithm |
static class |
ChangeRoi3DPropertiesFromTableAlgorithm.MetadataEntry |
class |
ColorRoi3DByNameAlgorithm |
class |
ColorRoi3DByStatisticsAlgorithm
Wrapper around
RoiManager |
class |
ROI3DCalculatorAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
OutlineRoi3DAlgorithm
Wrapper around
RoiManager |
class |
RemoveBorderRoi3DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ExplodeRoi3DListAlgorithm |
class |
SplitRoi3DIntoConnectedComponentsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ConstantSpotSegmentation3DAlgorithm |
class |
DifferenceSpotSegmentation3DAlgorithm |
class |
GaussianFitSpotSegmentation3DAlgorithm |
class |
HysteresisSegmentation3DAlgorithm |
class |
IterativeThreshold3DAlgorithm |
class |
LocalMeanSpotSegmentation3DAlgorithm |
class |
NucleiSegmentation3DAlgorithm |
class |
SeedSegmentationSettings |
class |
SpotSegmentation3DAlgorithm |
static class |
SpotSegmentation3DAlgorithm.SpotSegmentationSettings |
class |
Watershed3DSegmentationAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
Roi3DDrawer |
| Modifier and Type | Class and Description |
|---|---|
class |
TSOAXEnvironment
Parameter that describes a TSOAX environment
|
| Modifier and Type | Class and Description |
|---|---|
class |
ConvertFilamentCyclesToROIAlgorithm |
class |
ConvertFilamentsTo3DMeshAlgorithm |
class |
ConvertFilamentsToLabels2Algorithm |
class |
ConvertFilamentsToLabelsAlgorithm |
class |
ConvertFilamentsToMaskAlgorithm |
class |
ConvertFilamentsToRGBAlgorithm |
class |
ConvertFilamentsToRoi3DAlgorithm |
class |
ConvertFilamentsToRoiAlgorithm |
class |
ConvertROIToFilamentsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
FilterFilamentEdgesByProperties |
class |
FilterFilamentsByProperties |
class |
FilterFilamentVerticesByProperties |
class |
RemoveBorderFilaments |
| Modifier and Type | Class and Description |
|---|---|
class |
ImportFilamentsFromJsonAlgorithm |
class |
SkeletonToFilaments2DAlgorithm |
class |
SkeletonToFilaments3DAlgorithm |
class |
SkeletonToSimplifiedFilamentsFijiAlgorithm |
class |
TSOAX2DAlgorithm |
class |
TSOAX3DAlgorithm |
class |
TSOAXAlgorithm |
class |
TSOAXConvergenceParameters |
class |
TSOAXEvolutionParameters |
class |
TSOAXInitializationParameters |
class |
TSOAXResultAnalysisAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
MeasureEdgesAlgorithm |
class |
MeasureFilamentsAlgorithm |
class |
MeasureVerticesAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
MergeFilamentsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ChangeFilamentEdgePropertiesExpressionAlgorithm |
class |
ChangeFilamentEdgePropertiesManuallyAlgorithm |
class |
ChangeFilamentVertexPropertiesExpressionAlgorithm |
class |
ChangeFilamentVertexPropertiesManuallyAlgorithm |
class |
ConnectVerticesAlgorithm |
class |
ConnectVerticesFastAlgorithm |
class |
ErodeEndVerticesAlgorithm |
class |
FilamentCyclesToComponentsAlgorithm |
class |
FindLinearFilamentVertexOrderAlgorithm |
class |
FlattenFilamentsAlgorithm |
class |
GrowEndVerticesAlgorithm |
class |
RemoveVertexValueBackupsAlgorithm |
class |
RestoreVertexValueBackupAlgorithm |
class |
SetFilamentMetadataToComponentIndexAlgorithm |
class |
SetVertexMetadataFromImageAlgorithm |
class |
SetVertexPhysicalSizeFromImageAlgorithm |
class |
SetVertexRadiusFromImageAlgorithm |
class |
SetVertexValueFromImageAlgorithm |
class |
SubdivideFilamentEdges |
| Modifier and Type | Class and Description |
|---|---|
class |
SetOverlayFilamentsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
CopyFilamentsAcrossZCTAlgorithm |
static class |
CopyFilamentsAcrossZCTAlgorithm.NewEdgesSettings |
class |
FixOverlapsNonBranchingAlgorithm |
class |
RemoveDuplicateVerticesAlgorithm |
class |
SimplifyFilamentsAlgorithm |
class |
SmoothFilamentsAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
boolean |
CopyFilamentsAcrossZCTAlgorithm.isParameterUIVisible(JIPipeParameterTree tree,
JIPipeParameterCollection subParameter) |
| Modifier and Type | Class and Description |
|---|---|
class |
SplitFilamentsIntoConnectedComponentsAlgorithm |
class |
SplitFilamentsIntoCyclesAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
FilamentEdgeMetadataEntry |
class |
FilamentsVertexMetadataEntry |
| Modifier and Type | Class and Description |
|---|---|
class |
EdgeMaskParameter |
class |
VertexMaskParameter |
| Modifier and Type | Class and Description |
|---|---|
class |
FilamentsPluginProjectSettings |
class |
ImageViewerUIFilamentDisplayApplicationSettings |
class |
TSOAXApplicationSettings |
| Modifier and Type | Class and Description |
|---|---|
class |
FilamentsDrawer |
| Modifier and Type | Class and Description |
|---|---|
class |
MultiTemplateMatchingAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
TesseractOCREnvironment
Parameter that describes a TSOAX environment
|
| Modifier and Type | Class and Description |
|---|---|
class |
TesseractOCRAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
OCRPluginProjectSettings |
class |
TesseractOCRApplicationSettings |
| Modifier and Type | Class and Description |
|---|---|
class |
ConvertSpotsToRoiNode |
class |
ConvertTracksToRoiNode |
| Modifier and Type | Class and Description |
|---|---|
class |
CreateSpotDetectorNode |
class |
CreateSpotTrackerNode |
| Modifier and Type | Class and Description |
|---|---|
class |
MeasureSpotsNode |
class |
MergeSpotsNode |
class |
SplitSpotsNode |
class |
SpotDetectorNode |
class |
SpotFilterNode |
class |
SpotsToRGBNode |
| Modifier and Type | Class and Description |
|---|---|
class |
FollowSpotsPerTrackNode |
class |
MeasureBranchesNode |
class |
MeasureEdgesNode |
class |
MeasureTracksNode |
class |
MergeTracksNode |
class |
SplitTracksNode |
class |
TrackFilterNode |
class |
TrackingNode |
class |
TrackSchemeRendererNode |
class |
TracksToRGBNode |
| Modifier and Type | Class and Description |
|---|---|
class |
SpotFeatureFilterParameter |
class |
SpotFeaturePenaltyParameter |
class |
TrackFeatureFilterParameter |
| Modifier and Type | Class and Description |
|---|---|
class |
ImageViewerUISpotsDisplayApplicationSettings |
class |
ImageViewerUITracksDisplayApplicationSettings |
| Modifier and Type | Class and Description |
|---|---|
class |
DrawerLabelSettings |
class |
SpotDrawer |
static class |
SpotDrawer.LabelSettings |
class |
TrackDrawer |
| Modifier and Type | Class and Description |
|---|---|
class |
ImportWekaModelFromFileAlgorithm |
class |
WekaClassification2DAlgorithm |
class |
WekaClassification3DAlgorithm |
class |
WekaTrainingLabels2DAlgorithm |
class |
WekaTrainingLabels2DAlgorithm2 |
class |
WekaTrainingMask2DAlgorithm |
class |
WekaTrainingMask2DAlgorithm2 |
class |
WekaTrainingROI2DAlgorithm |
class |
WekaTrainingROI3DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
WekaClassifierSettings |
| Modifier and Type | Class and Description |
|---|---|
class |
WekaFeature2DSettings
Settings related to features
|
class |
WekaFeature3DSettings
Settings related to features
|
class |
WekaTiling2DSettings |
class |
WekaTiling3DSettings |
| Modifier and Type | Class and Description |
|---|---|
class |
IlastikEnvironment
Parameter that describes a Python environment
|
| Modifier and Type | Class and Description |
|---|---|
class |
ExportIlastikHDF5ImageAlgorithm |
class |
IlastikAutoContextAlgorithm |
static class |
IlastikAutoContextAlgorithm.OutputParameters |
class |
IlastikObjectClassificationAlgorithm |
static class |
IlastikObjectClassificationAlgorithm.OutputParameters |
class |
IlastikPixelClassificationAlgorithm |
static class |
IlastikPixelClassificationAlgorithm.OutputParameters |
class |
IlastikPredictionMapsObjectClassificationAlgorithm |
static class |
IlastikPredictionMapsObjectClassificationAlgorithm.OutputParameters |
class |
IlastikSegmentationImageObjectClassificationAlgorithm |
static class |
IlastikSegmentationImageObjectClassificationAlgorithm.OutputParameters |
class |
ImportIlastikHDF5ImageAlgorithm |
class |
ImportIlastikModel |
| Modifier and Type | Class and Description |
|---|---|
class |
IlastikPluginApplicationSettings |
class |
IlastikPluginProjectSettings |
| Modifier and Type | Class and Description |
|---|---|
class |
ImageJ2OpNode |
| Modifier and Type | Class and Description |
|---|---|
class |
CreateIJ2OutOfBoundsFactoryAlgorithm |
class |
CreateIJ2ShapeAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
BorderImageJ2OutOfBoundsFactoryData |
class |
EmptyImageJ2OutOfBoundsFactory |
class |
ImageJ2OutOfBoundsFactoryData |
class |
MirrorImageJ2OutOfBoundsFactoryData |
class |
PeriodicImageJ2OutOfBoundsFactoryData |
| Modifier and Type | Class and Description |
|---|---|
class |
ByteConstantValueImageJ2OutOfBoundsFactoryData |
class |
DoubleConstantValueImageJ2OutOfBoundsFactoryData |
class |
FloatConstantValueImageJ2OutOfBoundsFactoryData |
class |
IntegerConstantValueImageJ2OutOfBoundsFactoryData |
class |
LongConstantValueImageJ2OutOfBoundsFactoryData |
class |
ShortConstantValueImageJ2OutOfBoundsFactoryData |
| Modifier and Type | Class and Description |
|---|---|
class |
CenteredRectangleImageJ2ShapeData |
class |
DiamondImageJ2ShapeData |
class |
DiamondTipsImageJ2ShapeData |
class |
EmptyImageJ2ShapeData |
class |
HorizontalLineImageJ2ShapeData |
class |
HyperSphereImageJ2ShapeData |
class |
ImageJ2ShapeData |
class |
PairOfPointsImageJ2ShapeData |
class |
PeriodicLineImageJ2ShapeData |
class |
RectangleImageJ2ShapeData |
| Modifier and Type | Class and Description |
|---|---|
class |
MacroWrapperAlgorithm
An algorithm that wraps around an ImageJ macro
|
| Modifier and Type | Class and Description |
|---|---|
class |
AnalyzeSkeleton2D3DAlgorithm |
static class |
AnalyzeSkeleton2D3DAlgorithm.OutputParameters |
class |
AnnotateByImageStatisticsExpressionAlgorithm
Wrapper around
RoiManager |
class |
FindParticles2D
Converts a mask to ROI and ROI measurements
|
class |
ImageStatisticsAlgorithm
Wrapper around
RoiManager |
class |
ImageStatisticsExpressionAlgorithm
Wrapper around
RoiManager |
class |
OrientationVectorField2DAlgorithm |
static class |
OrientationVectorField2DAlgorithm.OutputParameters |
| Modifier and Type | Class and Description |
|---|---|
class |
RollingBallBackgroundEstimator2DAlgorithm
Wrapper around
RankFilters |
| Modifier and Type | Class and Description |
|---|---|
class |
BinarizeAlgorithm |
class |
BitwiseLogicalOperationAlgorithm |
class |
ConditionalInverterAlgorithm |
class |
ConnectedComponentsLabeling2DAlgorithm |
class |
ConnectedComponentsLabeling3DAlgorithm |
class |
ConvexifyAlgorithm |
class |
DistanceTransformWatershed2DAlgorithm
Wrapper around
EDM |
class |
KeepLargestRegionAlgorithm |
class |
RemoveLargestRegionAlgorithm |
class |
UltimateErodedPoints2DAlgorithm
Wrapper around
EDM |
class |
VolumeOpening2DAlgorithm |
class |
VolumeOpening3DAlgorithm |
class |
Voronoi2DAlgorithm
Wrapper around
EDM |
| Modifier and Type | Class and Description |
|---|---|
class |
BoxFilter2DAlgorithm
Wrapper around
ImageProcessor |
class |
BoxFilter3DAlgorithm
Wrapper around
GaussianBlur |
class |
GaussianBlur2DAlgorithm
Wrapper around
GaussianBlur |
class |
GaussianBlur3DAlgorithm
Wrapper around
GaussianBlur |
class |
MedianBlurFilter2DAlgorithm
Wrapper around
RankFilters |
class |
MedianBlurFilter3DAlgorithm
Wrapper around
GaussianBlur |
class |
MedianBlurGreyscale8U2DAlgorithm
Wrapper around
ImageProcessor |
class |
MedianBlurRGB2DAlgorithm
Wrapper around
ImageProcessor |
| Modifier and Type | Class and Description |
|---|---|
class |
CopyPhysicalDimensionsBetweenImagesAlgorithm |
class |
DrawScaleBarAlgorithm |
static class |
DrawScaleBarAlgorithm.TextSettings |
class |
SetPhysicalDimensionsAlgorithm |
class |
SetPhysicalDimensionsByAnnotationsAlgorithm |
class |
SetPhysicalDimensionsByExpressionsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
Coloc2Node |
static class |
Coloc2Node.Settings |
| Modifier and Type | Class and Description |
|---|---|
class |
ArrangeChannelsAlgorithm
Wrapper around
ChannelArranger |
class |
BlendImagesAlgorithm |
class |
ColorToGreyscaleExpression2D |
class |
CombineChannelsToRGBAlgorithm |
class |
InvertColorsAlgorithm
Wrapper around
ImageProcessor |
class |
MergeChannelsAlgorithm
Wrapper around
ImageProcessor |
class |
MergeHSBChannelsAlgorithm |
class |
MergeLABChannelsAlgorithm |
class |
MergeRGBChannelsAlgorithm |
class |
NewSplitChannelsAlgorithm
Wrapper around
ChannelSplitter |
class |
OverlayImagesAlgorithm
Deprecated.
Use
BlendImagesAlgorithm instead |
static class |
OverlayImagesAlgorithm.Channel
Deprecated.
|
class |
RenderImageToRGBAlgorithm |
class |
SplitChannelsAlgorithm
Deprecated.
|
class |
SplitChannelsByTableAlgorithm
Wrapper around
ChannelSplitter |
class |
SplitRGBChannelsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
CLAHEContrastEnhancer
Applies CLAHE image enhancing
|
class |
HistogramContrastEnhancerAlgorithm
This class is based on
ContrastEnhancer
This class is not very portable, so I adapted the code here |
class |
IlluminationCorrection2DAlgorithm
Applies illumination correction
|
class |
ImageJContrastEnhancerAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ConvertImageAlgorithm |
class |
ConvertImageTo16BitAlgorithm |
class |
ConvertImageTo16BitAutoContrastAlgorithm |
class |
ConvertImageTo32BitAlgorithm |
class |
ConvertImageTo8BitAlgorithm |
class |
ConvertImageTo8BitAutoContrastAlgorithm |
class |
ConvertImageToHSBAlgorithm |
class |
ConvertImageToLABAlgorithm |
class |
ConvertImageToRGBAlgorithm |
class |
ImageToMatrixAlgorithm
Algorithm that generates
ResultsTableData as histogram |
class |
ImageToTableAlgorithm
Algorithm that generates
ResultsTableData as histogram |
class |
ImageToTableColumnAlgorithm |
class |
MatrixToImageAlgorithm |
class |
MultipleImagesToTableAlgorithm
Algorithm that generates
ResultsTableData as histogram |
class |
TableColumnToImageAlgorithm |
class |
TableToImageAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ConvolveByImage2DAlgorithm
Wrapper around
Convolver |
class |
ConvolveByParameter2DAlgorithm
Wrapper around
Convolver |
| Modifier and Type | Class and Description |
|---|---|
class |
ImageStackFromFolder
Loads an image data from a file via IJ.openFile()
|
class |
OMEImageFromImagePlus |
| Modifier and Type | Class and Description |
|---|---|
class |
CircularHoughSegmentation2DAlgorithm
Segments using a Hough circle transform
|
class |
CornerHarris2DAlgorithm |
static class |
CornerHarris2DAlgorithm.OutputParameters |
class |
FastCircularHoughSegmentation2DAlgorithm
Segments using a Hough circle transform
This code is based on ...
|
class |
GlobalLinesHoughDetection2DAlgorithm |
class |
LineSegmentsHoughDetection2DAlgorithm |
class |
LinesHoughDetection2DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
CreateStackAlgorithm |
class |
ExpressionSlicerAlgorithm |
class |
HyperstackSlicerAlgorithm |
class |
Merge2DToHyperstackAlgorithm |
class |
NewZProjectorAlgorithm
Wrapper around
ZProjector |
class |
ReorderDimensionsAlgorithm
Algorithm that reorders Hyperstack dimensions
|
class |
ReorderHyperstackSlicesExpressionAlgorithm |
class |
ResliceAlgorithm |
class |
SplitByDimensionAlgorithm |
class |
StackCombinerAlgorithm |
class |
StackInverterAlgorithm
Wrapper around
ImageProcessor |
class |
StackSplitterAlgorithm
Wrapper around
ChannelArranger |
class |
StackTo2DAlgorithm
Wrapper around
ImageProcessor |
class |
StackToDimensionMerger2Algorithm
Wrapper around
ImageProcessor |
class |
StackToDimensionMergerAlgorithm
Wrapper around
ImageProcessor |
class |
ZProjectorAlgorithm
Wrapper around
ZProjector |
| Modifier and Type | Class and Description |
|---|---|
class |
CannyEdgeDetectorAlgorithm
This is the JIPipe version of the ImageJ plugin ...
|
class |
LaplacianEdgeDetectorAlgorithm
Wrapper around
ImageProcessor |
class |
SobelEdgeDetectorAlgorithm
Wrapper around
ImageProcessor |
| Modifier and Type | Class and Description |
|---|---|
class |
AlternatingMorphologicalFilters2DAlgorithm |
class |
DerivativesFeaturesAlgorithm |
class |
DifferenceOfGaussian2DAlgorithm
Wrapper around
GaussianBlur |
class |
DirectionalFilter2DAlgorithm |
class |
FrangiVesselnessFeatures
Applies CLAHE image enhancing
|
class |
HessianFeatureAlgorithm |
class |
LaplacianOfGaussian2DAlgorithm
Based on code by Dimiter Prodanov
...
|
class |
LocalMaxima2DAlgorithm
Wrapper around
MaximumFinder |
class |
MeijeringVesselness2DFeatures
Applies CLAHE image enhancing
|
class |
MorphologicalFeatureContrast2DAlgorithm |
class |
MorphologicalTextureContrast2DAlgorithm |
class |
OrientationFeatures2DAlgorithm |
static class |
OrientationFeatures2DAlgorithm.OutputParameters |
class |
StructureFeatureAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
FFT2DForwardTransform
Applies a FFT forward transformation
|
class |
FFT2DInverseTransform
Applies a FFT forward transformation
|
class |
FFT2DSwapQuadrants
Applies a FFT forward transformation
|
class |
FFTBandPassFilter |
class |
FFTCustomFilter |
| Modifier and Type | Class and Description |
|---|---|
class |
DrawMaskAlgorithm |
class |
DrawROIAlgorithm |
class |
MaskDrawerFormData
Structural
FormData for drawing masks |
class |
ROIDrawerFormData
Structural
FormData for drawing ROIs |
| Modifier and Type | Class and Description |
|---|---|
class |
GenerateLUTImageFromColorMap
Wrapper around
ImageProcessor |
class |
GenerateMissingImageFromMathExpression2D
Wrapper around
ImageProcessor |
class |
GenerateMissingTablesAlgorithm
Deprecated.
|
class |
GenerateMissingTablesAlgorithm2 |
class |
GenerateMissingZeroImage
Wrapper around
ImageProcessor |
class |
GenerateStructureElement2DAlgorithm
Wrapper around
ImageProcessor |
class |
GenerateStructureElement3DAlgorithm
Wrapper around
ImageProcessor |
class |
GenerateZeroImage
Wrapper around
ImageProcessor |
class |
ImageFromMatrix2DAlgorithm
Wrapper around
Convolver |
| Modifier and Type | Class and Description |
|---|---|
class |
ExportImage2Algorithm |
class |
ExportImageAlgorithm
Deprecated.
|
class |
ExportImageDirectorySlotAlgorithm |
class |
ExportROIAlgorithm
Deprecated.
|
class |
ExportROIAlgorithm2 |
class |
ExportTableAlgorithm
Deprecated.
|
class |
ExportTableAlgorithm2 |
class |
ExportTableAsXLSXAlgorithm
Deprecated.
|
class |
ExportTableAsXLSXAlgorithm2 |
class |
ImagePlusFromGUI
Imports
ImagePlusData from the GUI |
class |
ImagePlusToGUI
Imports
ImagePlusData from the GUI |
class |
ResultsTableFromGUI
Imports
ImagePlusData from the GUI |
class |
ResultsTableToGUI
Imports
ImagePlusData from the GUI |
class |
ROIFromGUI
Imports
ImagePlusData from the GUI |
class |
ROIToGUI
Imports
ImagePlusData from the GUI |
class |
RunImageJExporterAlgorithm |
class |
RunImageJImporterAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateWithOverlapMeasureLabelsAlgorithm |
class |
CropLabelsAlgorithm |
class |
DilateLabelsAlgorithm |
class |
ExpandLabelsAlgorithm |
class |
ExtractLabelStatisticsAlgorithm |
class |
GetLabelBoundariesAlgorithm |
class |
KeepLargestLabelAlgorithm |
class |
LabelsToMaskAlgorithm |
class |
LabelsToRGBAlgorithm |
class |
LabelsToROIAlgorithm |
class |
MergeLabelsAlgorithm |
class |
MergeLabelsToBinsAlgorithm |
class |
MergeLabelsToThicknessAlgorithm |
class |
MergeSmallLabelsAlgorithm |
class |
OverlapMeasureLabelsAlgorithm |
class |
RemapLabelsAlgorithm |
class |
ReplaceLabelsAlgorithm |
class |
ReplaceLabelsByTableAlgorithm |
class |
SeparateLabelsAlgorithm |
class |
SeparateTouchingLabels2DAlgorithm |
class |
SplitLabelsConnectedComponents2DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
FilterLabelsByExpression2DAlgorithm |
class |
FilterLabelsByExpression3DAlgorithm |
class |
FilterLabelsByIdAlgorithm |
class |
FilterLabelsByMaskAlgorithm |
class |
FilterLabelsByOverlapAlgorithm |
static class |
FilterLabelsByOverlapAlgorithm.LabelFilterSettings |
class |
FilterLabelsByStatisticsAlgorithm
Wrapper around
RoiManager |
class |
FilterLabelsByThicknessAlgorithm |
class |
RemoveBorderLabelsAlgorithm |
class |
RemoveLargestLabelAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ApplyLUTAlgorithm |
class |
LUTInverterAlgorithm |
class |
RemoveLUTAlgorithm |
class |
SetLUTFromColorMapAlgorithm |
class |
SetLUTFromColorsAlgorithm |
class |
SetLUTFromImageAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
SetToColorAlgorithm |
class |
SetToContentAwareAlgorithm |
class |
SetToValueAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ApplyColorMathExpression2DExpression |
class |
ApplyMathExpression2DAlgorithm
Wrapper around
ImageProcessor |
class |
ApplyTransform2DAlgorithm
Wrapper around
ImageProcessor |
class |
ApplyVectorMathExpression2DAlgorithm
Wrapper around
ImageProcessor |
class |
DivideByMaximumAlgorithm
Wrapper around
ImageProcessor |
class |
FastImageArithmeticsAlgorithm |
class |
GenerateFromMathExpression2D
Wrapper around
ImageProcessor |
class |
GenerateVectorFromMathExpression
Wrapper around
ImageProcessor |
class |
Hessian2DAlgorithm
Deprecated.
|
class |
ImageCalculator2DExpression |
class |
ImageComparer2DAlgorithm
Deprecated.
|
class |
LegacyApplyMath2DAlgorithm
Deprecated.
|
class |
LegacyImageCalculator2DAlgorithm
Deprecated.
|
class |
LegacyImageCalculator2DMergingAlgorithm
Deprecated.
|
class |
RemoveNaNFilter2DAlgorithm
Wrapper around
RankFilters |
class |
RoundFloatImageAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ApplyDistanceTransform2DAlgorithm
Wrapper around
EDM |
class |
ChamferDistanceMap2DAlgorithm |
class |
ChamferDistanceMap3DAlgorithm |
class |
GeodesicDistanceMap2DAlgorithm |
class |
LabelChamferDistanceMap3DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ExtendedMaxima2DAlgorithm |
class |
ExtendedMaxima3DAlgorithm |
class |
ExtendedMinima2DAlgorithm |
class |
ExtendedMinima3DAlgorithm |
class |
ImposeMaxima2DAlgorithm |
class |
ImposeMaxima3DAlgorithm |
class |
LocalImageCalculator2DExpression |
class |
LocalMaximumFilter2DAlgorithm
Wrapper around
RankFilters |
class |
LocalMaximumFilter3DAlgorithm
Wrapper around
RankFilters |
class |
LocalMinimumFilter2DAlgorithm
Wrapper around
RankFilters |
class |
LocalMinimumFilter3DAlgorithm
Wrapper around
RankFilters |
class |
LocalVarianceFilter2DAlgorithm
Wrapper around
RankFilters |
class |
LocalVarianceFilter3DAlgorithm
Wrapper around
RankFilters |
class |
RegionalMaxima2DAlgorithm |
class |
RegionalMaxima3DAlgorithm |
class |
RegionalMinima2DAlgorithm |
class |
RegionalMinima3DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ChangeImageMetadataFromExpressionsAlgorithm
Wrapper around
RoiManager |
class |
ExtractImageMetadataAlgorithm |
class |
RemoveImageMetadataAlgorithm |
class |
SetImageMetadataFromTableAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
DataToPreviewAlgorithm |
class |
RenderJIPipeProjectAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
InputImagesToMontage
Deprecated.
|
class |
InputImagesToMontage2 |
class |
MontageToStackAlgorithm
Implementation of
MontageMaker |
class |
StackToMontage2Algorithm
Implementation of
MontageMaker |
class |
StackToMontageAlgorithm
Deprecated.
|
| Modifier and Type | Class and Description |
|---|---|
class |
FindHoles2DAlgorithm |
class |
GrayscaleAttributeFiltering2DAlgorithm |
class |
GrayscaleAttributeFiltering3DAlgorithm |
class |
MorphologicalReconstruction2DAlgorithm |
class |
MorphologicalReconstruction3DAlgorithm |
class |
Morphology2DAlgorithm
Wrapper around
ImageProcessor |
class |
Morphology3DAlgorithm
Wrapper around
ImageProcessor |
class |
MorphologyBinary2DAlgorithm
Wrapper around
ImageProcessor |
class |
MorphologyFillHoles2DAlgorithm
Wrapper around
ImageProcessor |
class |
MorphologyInternalGradient2DAlgorithm
Wrapper around
ImageProcessor |
class |
MorphologyOutline2DAlgorithm
Wrapper around
ImageProcessor |
class |
MorphologySkeletonize2DAlgorithm
Wrapper around
ImageProcessor |
class |
MorphologySkeletonize3DAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
boolean |
Morphology2DAlgorithm.isParameterUIVisible(JIPipeParameterTree tree,
JIPipeParameterCollection subParameter) |
| Modifier and Type | Class and Description |
|---|---|
class |
AddNoise2DAlgorithm
Wrapper around
ImageProcessor |
class |
AddSaltAndPepperNoise2DAlgorithm
Wrapper around
ImageProcessor |
class |
DespeckleFilter2DAlgorithm
Wrapper around
RankFilters |
class |
RemoveOutliersFilter2DAlgorithm
Wrapper around
RankFilters |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateOMEWithMetadataAlgorithm |
static class |
AnnotateOMEWithMetadataAlgorithm.Entry |
class |
ExtractOMEROIAlgorithm |
class |
ExtractOMEXMLAlgorithm |
class |
OMEMetadataToTableAlgorithm |
static class |
OMEMetadataToTableAlgorithm.Entry |
| Modifier and Type | Class and Description |
|---|---|
class |
MSEBlockFlowAlgorithm
Adapted from
mpicbg.ij.plugin.MSEBlockFlow, as the methods there are all protected/private |
class |
MSEGaussianFlowAlgorithm
Adapted from
mpicbg.ij.plugin.MSEGaussianFlow, as the methods there are all protected/private |
class |
PMCCBlockFlowAlgorithm
Adapted from
mpicbg.ij.plugin.PMCCBlockFlow, as the methods there are all protected/private |
| Modifier and Type | Class and Description |
|---|---|
class |
ExtractOverlayAlgorithm |
class |
RemoveOverlayAlgorithm |
class |
RenderOverlayAlgorithm
Wrapper around
RoiDrawer |
class |
SetOverlayAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
SIFTParameters
Wrapper around
FloatArray2DSIFT params |
class |
SimpleBUnwarpJParameters
Reduced parameter set for
SimpleImageRegistrationAlgorithm (no shear, scale, anisotropy correction) |
class |
SimpleImageRegistrationAlgorithm
Port of
Register_Virtual_Stack_MT |
class |
SimpleImageRegistrationParameters |
| Modifier and Type | Method and Description |
|---|---|
boolean |
SimpleImageRegistrationAlgorithm.isParameterUIVisible(JIPipeParameterTree tree,
JIPipeParameterCollection subParameter) |
| Modifier and Type | Class and Description |
|---|---|
class |
AdvancedTurboRegParameters |
class |
TurboRegRegistration2DReferencedAlgorithm
Port of
Register_Virtual_Stack_MT |
class |
TurboRegRegistration2DSingleAlgorithm
Port of
Register_Virtual_Stack_MT |
class |
TurboRegRegistrationAlgorithmRule |
| Modifier and Type | Class and Description |
|---|---|
class |
CropToRoiAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
RoiPropertiesToAnnotationsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
AssembleExtractedROIAlgorithm |
class |
ExtractFromROIAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ExtractImageInRoiAlgorithm |
class |
GetRoiImageAlgorithm
Wrapper around
RoiManager |
class |
ROIToLabelsByNameAlgorithm |
static class |
ROIToLabelsByNameAlgorithm.ROINameToLabelEntry |
class |
ROIToLabelsExpressionAlgorithm |
class |
RoiToMaskAlgorithm
Wrapper around
RoiManager |
class |
RoiToRGBAlgorithm
Wrapper around
RoiDrawer |
class |
UnreferencedRoiToMaskAlgorithm
Wrapper around
RoiManager |
class |
UnreferencedRoiToRGBAlgorithm
Wrapper around
RoiManager |
| Modifier and Type | Class and Description |
|---|---|
class |
DrawLineOvalRectangleRoiAlgorithm |
static class |
DrawLineOvalRectangleRoiAlgorithm.Entry |
class |
DrawOvalRoiAlgorithm
Deprecated.
|
class |
DrawRectangleRoiAlgorithm
Deprecated.
|
class |
DrawScaleBarRoiAlgorithm |
static class |
DrawScaleBarRoiAlgorithm.TextSettings |
class |
DrawTextRoiAlgorithm |
class |
VisualLocationROIProperties
Limited version of
ROIEditor that only contains properties for creating ROI |
class |
VisualROIProperties
Limited version of
ROIEditor that only contains properties for creating ROI |
| Modifier and Type | Class and Description |
|---|---|
class |
FilterRoiByNameAlgorithm
Wrapper around
RoiManager |
class |
FilterROIByOverlapAlgorithm |
static class |
FilterROIByOverlapAlgorithm.ROIFilterSettings |
class |
FilterRoiByStatisticsAlgorithm
Wrapper around
RoiManager |
class |
FilterRoiByStatisticsScriptAlgorithm
Wrapper around
RoiManager |
class |
FilterROIListsAlgorithm |
class |
RemoveBorderRoisAlgorithm
Wrapper around
RoiManager |
class |
SliceROIListAlgorithm
Wrapper around
RoiManager |
| Modifier and Type | Class and Description |
|---|---|
class |
AppendRectangularRoiAlgorithm
Deprecated.
|
class |
DefineRectangularRoiAlgorithm
Deprecated.
|
class |
GenerateMissingRoiListsAlgorithm |
class |
MaskToRoiAlgorithm |
class |
ReferencedAppendRectangularRoiAlgorithm
Deprecated.
|
class |
ReferencedDefineRectangularRoiAlgorithm
Deprecated.
|
class |
TableToCircularROIAlgorithm
Wrapper around
RoiManager |
class |
TableToLineROIAlgorithm
Wrapper around
RoiManager |
class |
TableToPointROIAlgorithm
Wrapper around
RoiManager |
class |
TableToRectangularROIAlgorithm
Wrapper around
RoiManager |
class |
TableToTextROIAlgorithm
Wrapper around
RoiManager |
| Modifier and Type | Class and Description |
|---|---|
class |
CountROIAlgorithm |
class |
ExtractRoi2DRelationStatisticsAlgorithm |
class |
ExtractROIProfileAlgorithm |
class |
RoiStatisticsAlgorithm
Wrapper around
RoiManager |
| Modifier and Type | Class and Description |
|---|---|
class |
FilterAndMergeRoiByStatisticsScriptAlgorithm
Wrapper around
RoiManager |
class |
MergeRoiListsOrderedAlgorithm
Wrapper around
RoiManager |
class |
MergeRoiListsPairwiseOrAlgorithm
Wrapper around
RoiManager |
class |
MergeRoiListsUnorderedAlgorithm
Wrapper around
RoiManager |
| Modifier and Type | Class and Description |
|---|---|
class |
ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm |
class |
ChangeRoiPropertiesAlgorithm
Wrapper around
RoiManager |
class |
ChangeRoiPropertiesFromAnnotationsAlgorithm
Wrapper around
RoiManager |
class |
ChangeRoiPropertiesFromExpressionsAlgorithm
Wrapper around
RoiManager |
class |
ChangeRoiPropertiesFromTableAlgorithm
Wrapper around
RoiManager |
class |
ColorRoiByNameAlgorithm |
class |
ColorRoiByStatisticsAlgorithm
Wrapper around
RoiManager |
class |
CropRoiListAlgorithm
Wrapper around
RoiManager |
class |
EnlargeShrinkRoiAlgorithm
Wrapper around
RoiManager |
class |
FlattenRoiAlgorithm
Wrapper around
RoiManager |
class |
OutlineRoiAlgorithm
Wrapper around
RoiManager |
class |
OutlineRoiConcaveHullMoreiraSantosAlgorithm |
class |
ReorderRoiDimensionsAlgorithm
Algorithm that reorders Hyperstack dimensions
|
class |
RoiCalculatorAlgorithm
Wrapper around
RoiManager |
class |
RoiFloodFillAlgorithm
Wrapper around
RoiManager |
class |
RoiToCentroidAlgorithm
Wrapper around
RoiManager |
class |
RotateRoiAlgorithm
Wrapper around
RoiManager |
class |
ScaleRoiAlgorithm
Wrapper around
RoiManager |
class |
SetRoiImageAlgorithm
Wrapper around
RoiManager |
class |
UnsetRoiImageAlgorithm
Wrapper around
RoiManager |
| Modifier and Type | Class and Description |
|---|---|
class |
ExtractROIMetadataAlgorithm |
class |
RemoveROIMetadataAlgorithm |
class |
SetRoiMetadataByStatisticsAlgorithm
Wrapper around
RoiManager |
static class |
SetRoiMetadataByStatisticsAlgorithm.MetadataProperty |
class |
SetROIMetadataFromTableAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
RegisterRoiToImageByBrightnessAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
SortAndExtractRoiByStatisticsAlgorithm
Deprecated.
|
class |
SortAndExtractRoiByStatisticsAlgorithm2
Wrapper around
RoiManager |
class |
SortRoiListByExpressionsAndMeasurementsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ExplodeRoiAlgorithm
Wrapper around
RoiManager |
class |
SplitRoiAlgorithm
Wrapper around
RoiManager |
class |
SplitRoiConnectedComponentsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ClassicWatershedSegmentationAlgorithm |
class |
RidgeDetector2DAlgorithm |
class |
SeededWatershedSegmentationAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
LaplacianSharpen2DAlgorithm
Wrapper around
ImageProcessor |
| Modifier and Type | Class and Description |
|---|---|
class |
AverageKeyValueThresholdStatisticsGenerator |
class |
FastKeyValueThresholdStatisticsGenerator |
class |
HistogramGenerator
Algorithm that generates
ResultsTableData as histogram |
class |
KeyValueAveragesGenerator |
class |
KeyValueHistogramGenerator |
class |
KeyValueThresholdPartitionAveragesGenerator |
class |
KeyValueThresholdPartitionGenerator |
static class |
KeyValueThresholdPartitionGenerator.GeneratedColumn |
class |
KeyValueThresholdStatisticsGenerator |
| Modifier and Type | Class and Description |
|---|---|
class |
AutoThreshold2DAlgorithm
Thresholding node that thresholds via an auto threshold
|
class |
BrightSpotsSegmentation2DAlgorithm
Applies Bright spots segmentation
|
class |
CustomAutoThreshold2D16UAlgorithm
Thresholding node that thresholds via an auto threshold
|
class |
CustomAutoThreshold2D16Uv2Algorithm
Thresholding node that thresholds via an auto threshold
|
static class |
CustomAutoThreshold2D16Uv2Algorithm.ThresholdParameters |
class |
CustomAutoThreshold2D32FAlgorithm
Thresholding node that thresholds via an auto threshold
|
class |
CustomAutoThreshold2D32Fv2Algorithm
Thresholding node that thresholds via an auto threshold
|
static class |
CustomAutoThreshold2D32Fv2Algorithm.ThresholdParameters |
class |
CustomAutoThreshold2D8UAlgorithm
Thresholding node that thresholds via an auto threshold
|
class |
CustomAutoThreshold2D8Uv2Algorithm
Thresholding node that thresholds via an auto threshold
|
static class |
CustomAutoThreshold2D8Uv2Algorithm.ThresholdParameters |
class |
HessianSegmentation2DAlgorithm
Segments using a Hessian
|
class |
InternalGradientSegmentation2DAlgorithm
Internal gradient segmenter
|
class |
ManualThreshold16U2DAlgorithm
Wrapper around
ImageProcessor |
class |
ManualThreshold32F2DAlgorithm
Wrapper around
ImageProcessor |
class |
ManualThreshold8U2DAlgorithm
Wrapper around
ImageProcessor |
class |
PercentileThreshold8U2DAlgorithm
Wrapper around
ImageProcessor |
class |
ThresholdByAnnotation2DAlgorithm
Wrapper around
ImageProcessor |
| Modifier and Type | Class and Description |
|---|---|
class |
ColorThresholdExpression2D |
class |
ManualHSBThreshold2DAlgorithm |
class |
ManualLABThreshold2DAlgorithm |
class |
ManualRGBThreshold2DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
IterativeThresholdByROIStatistics2DAlgorithm |
static class |
IterativeThresholdByROIStatistics2DAlgorithm.FilteringParameters |
static class |
IterativeThresholdByROIStatistics2DAlgorithm.ScoreParameters |
| Modifier and Type | Class and Description |
|---|---|
class |
BernsenLocalAutoThreshold2DAlgorithm
Segmenter node that thresholds via an auto threshold
Based on code from
fiji.threshold.Auto_Local_Threshold |
class |
ContrastLocalAutoThreshold2DAlgorithm
Segmenter node that thresholds via an auto threshold
Based on code from
fiji.threshold.Auto_Local_Threshold |
class |
LocalAutoThreshold2DAlgorithm
Segmenter node that thresholds via an auto threshold
Based on code from
fiji.threshold.Auto_Local_Threshold |
class |
NiblackLocalAutoThreshold2DAlgorithm
Segmenter node that thresholds via an auto threshold
Based on code from
fiji.threshold.Auto_Local_Threshold |
class |
PhansalkarLocalAutoThreshold2DAlgorithm
Segmenter node that thresholds via an auto threshold
Based on code from
fiji.threshold.Auto_Local_Threshold |
class |
SauvolaLocalAutoThreshold2DAlgorithm
Segmenter node that thresholds via an auto threshold
Based on code from
fiji.threshold.Auto_Local_Threshold |
| Modifier and Type | Method and Description |
|---|---|
boolean |
TransformEqualizeDimensionsToMaxAlgorithm.isParameterUIVisible(JIPipeParameterTree tree,
JIPipeParameterCollection subParameter) |
boolean |
TransformEqualizeDimensionsAlgorithm.isParameterUIVisible(JIPipeParameterTree tree,
JIPipeParameterCollection subParameter) |
| Modifier and Type | Class and Description |
|---|---|
class |
MontageCreator
Custom algorithm for creating montages
|
static class |
MontageCreator.CanvasParameters |
static class |
MontageCreator.ImageParameters |
static class |
MontageCreator.LabelParameters |
class |
OrientationJStructureTensorParameters |
class |
SimpleImageAndRoiIteratingAlgorithm
Image processor algorithm that optionally takes a ROI
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImageJDataTypesApplicationSettings |
| Modifier and Type | Class and Description |
|---|---|
class |
ApplyDisplayContrastAlgorithm |
class |
DisplayRangeCalibrationAlgorithm |
class |
ExtractRoi2DFromOMEImageAlgorithm
Loads ROI data from a file via IJ.openFile()
|
class |
SetBioFormatsExporterSettings |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateDataWithImagePropertiesAlgorithm
Adds data annotations that contain the image properties
|
class |
BioFormatsAnnotatorAlgorithm
BioFormats importer wrapper
|
static class |
BioFormatsAnnotatorAlgorithm.BioFormatsSettings |
class |
ImagePropertiesToAnnotationAlgorithm
Adds data annotations that contain the image properties
|
| Modifier and Type | Class and Description |
|---|---|
class |
ColorSpaceConverterAlgorithm |
class |
ToHSBColorSpaceConverterAlgorithm |
class |
ToLABColorSpaceConverterAlgorithm |
class |
ToRGBColorSpaceConverterAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
BioFormatsExporter2Algorithm |
class |
BioFormatsExporterAlgorithm
Deprecated.
|
class |
BioFormatsImporterAlgorithm
BioFormats importer wrapper
|
class |
ExportImagePlusAsOMEZARRAlgorithm |
class |
ImportImageJSampleAlgorithm |
class |
ImportImagePlusAlgorithm
Loads an image data from a file via IJ.openFile()
|
class |
ImportLUTAsRGBFromFileAlgorithm |
class |
ImportOMEZARRFromURIAsImagePlusAlgorithm |
class |
ImportOMEZARRFromZipDirectoryAsImagePlusAlgorithm |
class |
ImportResultsTableAlgorithm
Imports
ResultsTableData from a file |
class |
ImportRoi2DAlgorithm
Loads ROI data from a file via IJ.openFile()
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImageTypeConverter
Converts ImageJ data type into each other
|
| Modifier and Type | Class and Description |
|---|---|
class |
OMEExporterSettings |
| Modifier and Type | Class and Description |
|---|---|
class |
ImageSamplesApplicationSettings |
class |
ImageSamplesProjectSettings |
class |
ImageViewerUIROI2DDisplayApplicationSettings |
| Modifier and Type | Class and Description |
|---|---|
class |
CalibrationParameters |
class |
ImageBlendLayer |
class |
RoiDrawer
Advanced ROI drawing algorithm with better flexibility compared to the methods of
ROI2DListData |
class |
ROIEditor
Parameters to edit ROI and transform
Roi via the settings (no-destructive) |
| Modifier and Type | Class and Description |
|---|---|
static class |
JIPipeDesktopLegacyImageViewerPanel2D.CompositeLayer |
| Modifier and Type | Class and Description |
|---|---|
static class |
MeasurementDrawerPlugin2D.Settings |
| Modifier and Type | Class and Description |
|---|---|
class |
Measurement2DSettings |
| Modifier and Type | Class and Description |
|---|---|
class |
ImageViewerGeneralUIApplicationSettings
All settings for
AbstractJIPipeDesktopGraphEditorUI |
class |
LegacyImageViewer2DUIApplicationSettings
All settings for
AbstractJIPipeDesktopGraphEditorUI |
| Modifier and Type | Class and Description |
|---|---|
class |
ConvertImpImageToImagePlusAlgorithm |
class |
ExportImpImageAlgorithm |
class |
ImportImpImageAlgorithm |
class |
SetImpAlphaChannelAlgorithm |
class |
SplitImpAlphaChannelAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotationsToParametersAlgorithm |
class |
ConvertParametersToTableAlgorithm |
class |
DefineParametersAlgorithm
Generates
ParametersData objects |
class |
DefineParametersFromGlobalParametersAlgorithm
Generates
ParametersData objects |
class |
DefineParametersFromTableAlgorithm |
static class |
DefineParametersFromTableAlgorithm.Column |
class |
DefineParametersTableAlgorithm
Generates
ParametersData objects |
class |
ExtractParametersAlgorithm |
class |
GeneratedParameters
Encapsulates the generation of parameters
|
class |
GenerateParametersFromExpressionAlgorithm |
static class |
GenerateParametersFromExpressionAlgorithm.Column |
class |
MergeParametersAlgorithm |
class |
MultiplyParametersAlgorithm |
class |
ParametersToAnnotationsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
NapariPluginApplicationSettings |
| Modifier and Type | Class and Description |
|---|---|
class |
OMEROCredentialsEnvironment |
class |
OMEROPluginApplicationSettings |
class |
OMEROPluginProjectSettings |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateOMERODatasetReferenceAlgorithm |
class |
AnnotateOMEROImageReferenceAlgorithm |
class |
AnnotateOMEROPlateReferenceAlgorithm |
class |
AnnotateOMEROProjectReferenceAlgorithm |
class |
AnnotateOMEROScreenReferenceAlgorithm |
class |
AnnotateOMEROWellReferenceAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
OMERODatasetReferenceDataSource |
class |
OMEROGroupReferenceDataSource |
class |
OMEROImageReferenceDataSource |
class |
OMEROPlateReferenceDataSource |
class |
OMEROProjectReferenceDataSource |
class |
OMEROScreenReferenceDataSource |
class |
OMEROWellReferenceDataSource |
| Modifier and Type | Class and Description |
|---|---|
class |
DownloadOMEROImageAlgorithm |
class |
DownloadOMEROTableAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
OMEROCreateDatasetAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
OMEROListDatasetImagesAlgorithm |
class |
OMEROListDatasetsAlgorithm |
class |
OMEROListGroupsAlgorithm |
class |
OMEROListPlatesAlgorithm |
class |
OMEROListProjectsAlgorithm |
class |
OMEROListScreensAlgorithm |
class |
OMEROListWellImagesAlgorithm |
class |
OMEROListWellsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
UploadOMEROImageToDatasetAlgorithm |
class |
UploadOMEROTableAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotationsToOMEROKeyValuePairExporter |
class |
AnnotationsToOMEROTagExporter |
class |
ImageImportParameters |
class |
OMEROKeyValuePairToAnnotationImporter |
class |
OMEROTagToAnnotationImporter |
| Modifier and Type | Class and Description |
|---|---|
class |
OmniposePluginApplicationSettings |
class |
OmniposePluginProjectSettings |
| Modifier and Type | Class and Description |
|---|---|
class |
ImportPretrainedOmnipose0ModelAlgorithm |
class |
Omnipose0InferenceAlgorithm |
class |
Omnipose0TrainingAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
LegacyOmnipose0InferenceAlgorithm
Deprecated.
|
class |
LegacyOmnipose0TrainingAlgorithm
Deprecated.
|
| Modifier and Type | Class and Description |
|---|---|
class |
OmniposeSegmentationThresholdSettings |
class |
OmniposeSegmentationTweaksSettings |
class |
OmniposeTrainingTweaksSettings |
| Modifier and Type | Class and Description |
|---|---|
class |
ConvertDepthAlgorithm |
class |
ConvertTypeAlgorithm |
class |
InpaintingAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
BilateralFilterAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
GaborKernelGenerator |
class |
GaussianKernelGenerator |
| Modifier and Type | Method and Description |
|---|---|
JIPipeParameterCollection |
ListParameterItemParameterAccess.getSource() |
| Modifier and Type | Class and Description |
|---|---|
class |
EnumParameterGenerator |
| Modifier and Type | Method and Description |
|---|---|
JIPipeParameterCollection |
FunctionParameterOutputAccess.getSource() |
JIPipeParameterCollection |
FunctionParameterParameterAccess.getSource() |
JIPipeParameterCollection |
FunctionParameterInputAccess.getSource() |
| Modifier and Type | Class and Description |
|---|---|
class |
SlotMapParameterCollection
Parameter that holds a value for each data slot
|
| Modifier and Type | Method and Description |
|---|---|
JIPipeParameterCollection |
OptionalParameterContentAccess.getSource() |
| Modifier and Type | Method and Description |
|---|---|
JIPipeParameterCollection |
PairParameterValueAccess.getSource() |
JIPipeParameterCollection |
PairParameterKeyAccess.getSource() |
| Modifier and Type | Method and Description |
|---|---|
WeakReference<JIPipeParameterCollection> |
ScriptDesktopParameterEditorUI.ExternalEditor.getParameterCollection() |
| Constructor and Description |
|---|
ExternalEditor(JIPipeDesktopWorkbench workbench,
WeakReference<JIPipeParameterCollection> parameterCollection,
String parameterKey,
JIPipeParameterTree parameterTree,
JIPipeParameterAccess parameterAccess) |
ExternalFileExternalEditor(JIPipeDesktopWorkbench workbench,
WeakReference<JIPipeParameterCollection> parameterCollection,
String parameterKey,
JIPipeParameterTree parameterTree,
JIPipeParameterAccess parameterAccess) |
TabExternalEditor(JIPipeDesktopWorkbench workbench,
WeakReference<JIPipeParameterCollection> parameterCollection,
String parameterKey,
JIPipeParameterTree parameterTree,
JIPipeParameterAccess access) |
WindowExternalEditor(JIPipeDesktopWorkbench workbench,
WeakReference<JIPipeParameterCollection> parameterCollection,
String parameterKey,
JIPipeParameterTree parameterTree,
JIPipeParameterAccess access) |
| Modifier and Type | Method and Description |
|---|---|
<T extends JIPipeParameterCollection> |
ParameterCollectionList.mapToCollection(Class<T> klass)
Maps the items to a
JIPipeParameterCollection type. |
| Modifier and Type | Method and Description |
|---|---|
void |
ParameterCollectionList.addFromTemplate(JIPipeParameterCollection source) |
| Modifier and Type | Method and Description |
|---|---|
static ParameterCollectionList |
ParameterCollectionList.containingCollection(Class<? extends JIPipeParameterCollection> klass)
Creates an instance from a template collection class.
|
| Modifier and Type | Class and Description |
|---|---|
class |
FileChooserBookmark |
| Modifier and Type | Class and Description |
|---|---|
class |
InputSlotMapParameterCollection
Parameter that holds a value for each data slot
|
class |
OutputSlotMapParameterCollection
Parameter that holds a value for each data slot
|
| Modifier and Type | Class and Description |
|---|---|
class |
NumberRangeParameterGenerator
Generator that creates instances of
Number. |
class |
StringOrDouble
Can either filter a string or a double
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImageJDataExportOperationRef
Helper to allow easy serialization of
ImageJDataExporter references |
class |
ImageJDataImportOperationRef
Helper to allow easy serialization of
ImageJDataImporter references |
| Modifier and Type | Class and Description |
|---|---|
class |
FixedMargin
Related to
Margin, but with fixed-size objects |
class |
InnerMargin
Related to
Margin, but with fixed-size objects |
class |
Margin
Parameter that allows users to define a rectangle ROI.
|
| Modifier and Type | Method and Description |
|---|---|
JIPipeParameterCollection |
ParameterTableCellAccess.getSource() |
| Modifier and Type | Class and Description |
|---|---|
class |
RenderPipelineRunSettings |
| Modifier and Type | Class and Description |
|---|---|
class |
BarBoxAndWhiskerCategoryJFreeChartPlotData
A box and whisker plot
Series table columns: Value (Double), Category (String), Group (String)
Multiple series: Yes
|
class |
BarCategoryJFreeChartPlotData
A bar category plot
Series table columns: Value (Double), Category (String), Group (String)
Multiple series: No
|
class |
BarStatisticalCategoryJFreeChartPlotData
A statistical bar category plot
Series table columns: Value (Double), Category (String), Group (String)
Multiple series: No
|
class |
BoxAndWhiskerCategoryJFreeChartPlotData
Contains data for box and whisker category plots category plots.
|
class |
CategoryJFreeChartPlotData
Contains data for category plots.
|
class |
HistogramJFreeChartPlotData
Contains data to generate a histogram plot
Series table colums: Value (Numeric)
Multiple series: Yes
|
class |
JFreeChartPlotData
Contains all necessary data to generate a plot
|
class |
JFreeChartPlotDataSeries
A data series (table) that is rendered as plot series
|
class |
LineCategoryJFreeChartPlotData
Generates a bar category plot
Series table columns: Value (Double), Category (String), Group (String)
Multiple series: No
|
class |
LineStatisticalCategoryJFreeChartPlotData
Generates a bar category plot
Series table columns: Value (Double), Category (String), Group (String)
Multiple series: No
|
class |
LineXYJFreeChartPlotData
Generates a bar category plot
Series table columns: X (Double), Y (Double)
Multiple series: Yes
|
class |
Pie2DJFreeChartPlotData
Generates a Pie chart
Series table columns: Amount (Double), Category (String)
Multiple series: No
|
class |
Pie3DJFreeChartPlotData
Generates a Pie chart
Series table columns: Amount (Double), Category (String)
Multiple series: No
|
class |
PieJFreeChartPlotData
Contains data for pie plots.
|
class |
ScatterXYJFreeChartPlotData
A scatter XY plot
Series table columns: X (Double), Y (Double)
Multiple series: Yes
|
class |
StackedBarCategoryJFreeChartPlotData
A stacked bar plot
Series table columns: Value (Double), Category (String), Group (String)
Multiple series: No
|
class |
StatisticalCategoryJFreeChartPlotData
Contains data for statistical plots.
|
class |
XYJFreeChartPlotData
Contains data for XY plots
Any plot has following columns:
X (Double), Y (Double)
|
| Modifier and Type | Class and Description |
|---|---|
class |
PlotTables2Algorithm
Algorithm that creates
JFreeChartPlotData from ResultsTableData
This is an improved version of PlotTables2Algorithm that is linked directly to a specific plot |
class |
PlotTablesAlgorithm
Deprecated.
Instead, the new dynamically generated plotting should be utilized
|
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeProcessesPluginApplicationSettings |
class |
ProcessEnvironment |
| Modifier and Type | Class and Description |
|---|---|
class |
PythonEnvironment
Parameter that describes a Python environment
|
class |
PythonPackageLibraryEnvironment
An environment-like type that points to a package
|
class |
PythonPluginApplicationSettings |
class |
PythonPluginProjectSettings |
| Modifier and Type | Method and Description |
|---|---|
static void |
PythonUtils.parametersToPython(StringBuilder code,
JIPipeParameterCollection parameterCollection)
Converts parameters into Python code.
|
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipePythonAdapterLibraryEnvironment
Environment that supplies the JIPipe Python adapter library
|
class |
JIPipePythonPluginAdapterApplicationSettings |
| Modifier and Type | Class and Description |
|---|---|
class |
IteratingJythonScriptAlgorithm
An algorithm that allows to run Python code
|
class |
JythonScriptAlgorithm
An algorithm that allows to run Python code
|
class |
MergingJythonScriptAlgorithm
An algorithm that allows to run Python code
|
class |
SimpleIteratingJythonScriptAlgorithm
An algorithm that allows to run Python code
|
| Modifier and Type | Class and Description |
|---|---|
class |
IteratingPythonScriptAlgorithm
An algorithm that allows to run Python code
|
class |
MergingPythonScriptAlgorithm
An algorithm that allows to run Python code
|
class |
PythonScriptAlgorithm
An algorithm that allows to run Python code
|
| Modifier and Type | Class and Description |
|---|---|
static class |
SelectCondaEnvPythonInstaller.Configuration |
static class |
SelectSystemPythonInstaller.Configuration |
static class |
SelectVirtualEnvPythonInstaller.Configuration |
| Modifier and Type | Class and Description |
|---|---|
class |
REnvironment |
class |
RPluginApplicationSettings |
class |
RPluginProjectSettings |
| Modifier and Type | Method and Description |
|---|---|
static void |
RUtils.parametersToR(StringBuilder code,
JIPipeParameterCollection parameterCollection)
Converts parameters into R code.
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImportRDatasetAlgorithm |
class |
IteratingRScriptAlgorithm |
class |
MergingRScriptAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
Scene3DLineGeometry |
static class |
Scene3DLineGeometry.LineEndPoint |
class |
Scene3DSphereGeometry |
| Modifier and Type | Class and Description |
|---|---|
class |
CreateLineMeshAlgorithm |
class |
CreateSphereMeshAlgorithm |
class |
ExportScene3DToColladaAlgorithm
Deprecated.
|
class |
ExportScene3DToColladaAlgorithm2 |
class |
GroupSceneAlgorithm |
class |
MaskTo3DMeshAlgorithm |
class |
MergeScenesAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ImportJsonAlgorithm |
class |
ImportStringAlgorithm |
class |
ImportXMLAlgorithm |
class |
StringDefinitionDataSource |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateWithJsonDataAlgorithm |
static class |
AnnotateWithJsonDataAlgorithm.Entry |
class |
ExtractJsonDataAsTableAlgorithm |
static class |
ExtractJsonDataAsTableAlgorithm.Entry |
class |
ExtractTextFromJsonAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateWithTextDataAlgorithm |
static class |
AnnotateWithTextDataAlgorithm.Entry |
class |
ProcessTextDataAlgorithm |
class |
TableToCSVTextAlgorithm |
class |
TextDataToTableAlgorithm |
static class |
TextDataToTableAlgorithm.Entry |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateWithXPathDataAlgorithm |
static class |
AnnotateWithXPathDataAlgorithm.Entry |
class |
ExtractTextFromXMLAlgorithm |
class |
ExtractXPathDataAsTableAlgorithm |
static class |
ExtractXPathDataAsTableAlgorithm.Entry |
class |
PrettifyXMLAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
DefineTablesAlgorithm
Algorithm that annotates all data with the same annotation
|
class |
GenerateColumnAlgorithm
Algorithm that adds or replaces a column by a generated value
|
class |
GenerateTableFromExpressionAlgorithm
Algorithm that adds or replaces a column by a generated value
|
class |
IntegrateColumnsAlgorithm
Algorithm that integrates columns
|
class |
ModifyAndMergeTablesScript
Algorithm that annotates all data with the same annotation
|
class |
ModifyTableColumnNamesAlgorithm |
class |
ModifyTablesScript
Algorithm that annotates all data with the same annotation
|
class |
TablesFromScript
Algorithm that annotates all data with the same annotation
|
| Modifier and Type | Class and Description |
|---|---|
class |
AddAnnotationColumnsAlgorithm
Algorithm that integrates columns
|
class |
AnnotateByTablePropertiesAlgorithm |
class |
AnnotateDataWithTableValues |
static class |
AnnotateDataWithTableValues.AnnotationSettings |
class |
ConvertAnnotationTableToAnnotatedTables
Algorithm that integrates columns
|
| Modifier and Type | Class and Description |
|---|---|
class |
ApplyExpressionToColumnsAlgorithm
Deprecated.
|
class |
ApplyExpressionToTableByColumnAlgorithm
Algorithm that integrates columns
|
static class |
ApplyExpressionToTableByColumnAlgorithm.ProcessingItem |
class |
ColumnsToAnnotationsAlgorithm |
class |
ColumnToNumericAlgorithm
Algorithm that removes columns
|
class |
ColumnToStringAlgorithm
Algorithm that removes columns
|
class |
ConvertColumnsAlgorithm
Algorithm that integrates columns
|
class |
RemoveColumnAlgorithm
Algorithm that removes columns
|
class |
RenameSingleColumnsAlgorithm
Algorithm that removes columns
|
class |
RenameTableColumns2Algorithm
Algorithm that removes columns
|
static class |
RenameTableColumns2Algorithm.RenamingEntry |
class |
RenameTableColumnsAlgorithm
Deprecated.
|
class |
RenameTableColumnsToAnnotationAlgorithm
Algorithm that removes columns
|
class |
SortTableColumnsAlgorithm
Algorithm that integrates columns
|
| Modifier and Type | Class and Description |
|---|---|
class |
FilterTableRowsAlgorithm
Algorithm that integrates columns
|
class |
FilterTablesAlgorithm
Algorithm that integrates columns
|
class |
SliceTableRowsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
MergeColumnsAlgorithm
Algorithm that integrates columns
|
class |
MergeTableColumnsSimpleAlgorithm
Algorithm that integrates columns
|
class |
MergeTableColumnsSupplementAlgorithm
Algorithm that integrates columns
|
class |
MergeTableColumnsSupplementMergingAlgorithm
Algorithm that integrates columns
|
class |
MergeTableRowsAlgorithm
Algorithm that integrates columns
|
| Modifier and Type | Class and Description |
|---|---|
class |
AddMissingRowsInSeriesAlgorithm |
class |
ApplyExpressionPerRowAlgorithm
Deprecated.
|
class |
ApplyExpressionPerRowAlgorithm2 |
static class |
ApplyExpressionPerRowAlgorithm2.Entry |
class |
SortTableRowsAlgorithm
Algorithm that integrates columns
|
| Modifier and Type | Class and Description |
|---|---|
class |
SplitTableByColumnsAlgorithm
Algorithm that integrates columns
|
class |
SplitTableIntoColumnsAlgorithm
Algorithm that integrates columns
|
class |
SplitTableIntoRowsAlgorithm
Algorithm that integrates columns
|
| Modifier and Type | Class and Description |
|---|---|
class |
DBSCANClusteringAlgorithm |
static class |
DBSCANClusteringAlgorithm.ClusteringSettings |
static class |
DBSCANClusteringAlgorithm.OutputSettings |
class |
FuzzyKMeansClusteringAlgorithm |
static class |
FuzzyKMeansClusteringAlgorithm.ClusteringSettings |
static class |
FuzzyKMeansClusteringAlgorithm.OutputSettings |
class |
KMeansClusteringAlgorithm |
static class |
KMeansClusteringAlgorithm.ClusteringSettings |
static class |
KMeansClusteringAlgorithm.OutputSettings |
| Modifier and Type | Class and Description |
|---|---|
class |
ApplyExpressionPerLabelAlgorithm |
class |
MeltTableAlgorithm
Algorithm that integrates columns
|
class |
TableToHistogram2Algorithm |
static class |
TableToHistogram2Algorithm.OutputColumn |
class |
TableToHistogramAlgorithm
Deprecated.
|
static class |
TableToHistogramAlgorithm.AdditionalColumn
Deprecated.
|
class |
UnMeltTableAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ConverterAlgorithm
Algorithm that converts any type to any other type
|
class |
DataSlicer |
class |
DuplicateDataAlgorithm |
class |
ImportJIPipeSlotFolderAlgorithm |
class |
IterationStepSlicer |
class |
RunExpressionAlgorithm |
class |
SelectDataTableRowsAlgorithm |
class |
SleepAlgorithm |
class |
SortRowsByAnnotationsAlgorithm |
class |
SortRowsByExpressionAlgorithm |
static class |
SortRowsByExpressionAlgorithm.SortEntry |
class |
ToDataStringAlgorithm |
class |
UsePlaceholderForMissingDataAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateWithDataTableProperties |
class |
ExtractTableAlgorithm |
class |
MergeDataToTableAlgorithm |
class |
PullDataTableAnnotations |
class |
PushDataTableAnnotations |
| Modifier and Type | Class and Description |
|---|---|
class |
DistributeDataRandomlyByCountAlgorithm |
class |
DistributeDataRandomlyByPercentageAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
CrasherAlgorithm |
class |
MultiIterationStepCheckerAlgorithm |
class |
SingleIterationStepCheckerAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
GetJIPipeSlotFolderAlgorithm |
class |
JIPipeProjectParameterDefinition |
class |
PathsToJIPipeProjectParametersAlgorithm |
class |
RunJIPipeProjectAlgorithm
Runs a JIPipe project
|
| Modifier and Type | Class and Description |
|---|---|
class |
RunProcessIteratingAlgorithm |
class |
RunProcessMergingAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
static void |
ParameterUtils.deserializeParametersFromJson(JIPipeParameterCollection target,
com.fasterxml.jackson.databind.JsonNode node,
JIPipeValidationReportContext context,
JIPipeValidationReport issues)
Deserializes parameters from JSON
|
static <T> T |
ParameterUtils.getParameter(JIPipeParameterCollection collection,
String key,
Class<T> klass)
Gets a parameter from a
JIPipeParameterCollection |
static boolean |
ParameterUtils.isHiddenLocalParameterCollection(JIPipeParameterTree tree,
JIPipeParameterCollection collection,
String... keys)
Returns true if the collection is not a direct child of the tree root
|
static void |
SerializationUtils.jsonStringToParameterCollection(JIPipeParameterCollection target,
String json)
Deserializes JSON data into a
JIPipeParameterCollection |
static String |
SerializationUtils.parameterCollectionToJsonString(JIPipeParameterCollection parameterCollection)
Serializes a
JIPipeParameterCollection into a JSON string |
static void |
ParameterUtils.serializeParametersToJson(JIPipeParameterCollection target,
com.fasterxml.jackson.core.JsonGenerator jsonGenerator)
Serializes parameters to JSON using a generator
|
static void |
ParameterUtils.serializeParametersToJson(JIPipeParameterCollection target,
com.fasterxml.jackson.core.JsonGenerator jsonGenerator,
Predicate<Map.Entry<String,JIPipeParameterAccess>> filter)
Serializes parameters to JSON using a generator
|
static boolean |
ParameterUtils.setParameter(JIPipeParameterCollection collection,
String key,
Object value)
Sets a parameter of a
JIPipeParameterCollection and triggers the associated events |
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