| Modifier and Type | Method and Description |
|---|---|
static <T extends JIPipeGraphNode> |
JIPipe.createNode(Class<T> klass)
Creates a new node instance from its class.
|
static <T extends JIPipeGraphNode> |
JIPipe.createNode(String id)
Creates a new node instance from its id
|
static <T extends JIPipeGraphNode> |
JIPipe.duplicateNode(T node)
Duplicates a
JIPipeGraphNode |
<T extends JIPipeGraphNode> |
JIPipeDefaultJavaPlugin.registerNodeExample(Class<T> nodeClass,
String name,
Consumer<T> configurator)
Registers a node as node example based on a node instance
The configurator function is run prior to the registration
Must be run within postprocess()
|
| Modifier and Type | Method and Description |
|---|---|
void |
JIPipeDefaultJavaPlugin.registerNodeExample(JIPipeGraphNode node)
Registers a node example based on the node instance
The name of the example is taken from the node custom name
Must be run within postprocess()
|
| Modifier and Type | Method and Description |
|---|---|
void |
JIPipeDefaultJavaPlugin.registerNodeType(String id,
Class<? extends JIPipeGraphNode> nodeClass)
Registers a new node type.
|
void |
JIPipeDefaultJavaPlugin.registerNodeType(String id,
Class<? extends JIPipeGraphNode> nodeClass,
URL icon)
Registers a new node type.
|
| Modifier and Type | Method and Description |
|---|---|
static void |
JIPipeNodeTemplate.create(JIPipeDesktopGraphCanvasUI canvasUI,
Set<JIPipeGraphNode> algorithms) |
| Modifier and Type | Method and Description |
|---|---|
Map<String,JIPipeDataTable> |
JIPipeCache.query(JIPipeGraphNode graphNode,
UUID nodeUUID,
JIPipeProgressInfo progressInfo) |
Map<String,JIPipeDataTable> |
JIPipeLocalProjectMemoryCache.query(JIPipeGraphNode graphNode,
UUID nodeUUID,
JIPipeProgressInfo progressInfo) |
void |
JIPipeCache.store(JIPipeGraphNode graphNode,
UUID nodeUUID,
JIPipeDataTable data,
String outputName,
JIPipeProgressInfo progressInfo) |
void |
JIPipeLocalProjectMemoryCache.store(JIPipeGraphNode graphNode,
UUID nodeUUID,
JIPipeDataTable data,
String outputName,
JIPipeProgressInfo progressInfo) |
| Modifier and Type | Class and Description |
|---|---|
class |
IOInterfaceAlgorithm
Algorithm that passes the input to the output
|
class |
JIPipeProjectCompartment
A project compartment.
|
class |
JIPipeProjectCompartmentOutput
A graph compartment output
Transfers data 1:1 from input to output
|
| Modifier and Type | Method and Description |
|---|---|
JIPipeGraphNode |
SingleImageJAlgorithmRunConfiguration.getAlgorithm() |
| Modifier and Type | Method and Description |
|---|---|
void |
SingleImageJAlgorithmRunConfiguration.exportOutputToImageJ(JIPipeGraphNode algorithm,
JIPipeProgressInfo progressInfo)
Extracts algorithm output into ImageJ.
|
void |
SingleImageJAlgorithmRunConfiguration.importInputsFromImageJ(JIPipeGraphNode algorithm,
JIPipeProgressInfo progressInfo)
Pushes selected ImageJ data into the algorithm input slots
|
| Constructor and Description |
|---|
SingleImageJAlgorithmRunConfiguration(JIPipeGraphNode algorithm) |
| Modifier and Type | Method and Description |
|---|---|
JIPipeGraphNode |
JIPipeDataSlot.getNode() |
| Modifier and Type | Method and Description |
|---|---|
JIPipeDataSlot |
JIPipeDataSlotInfo.createInstance(JIPipeGraphNode node) |
static JIPipeInputDataSlot |
JIPipeDataSlot.createSingletonSlot(JIPipeData data,
JIPipeGraphNode node)
Creates a new input slot that contains only one data item
|
void |
JIPipeDataSlot.setNode(JIPipeGraphNode node)
Reassigns the node
|
| Modifier and Type | Method and Description |
|---|---|
JIPipeDefaultMutableSlotConfiguration.Builder |
JIPipeDefaultMutableSlotConfiguration.Builder.addFromAnnotations(Class<? extends JIPipeGraphNode> klass)
Adds slots from parameter annotations (with autoCreate)
|
| Constructor and Description |
|---|
JIPipeDataSlot(JIPipeDataSlotInfo info,
JIPipeGraphNode node)
Creates a new slot
|
JIPipeInputDataSlot(JIPipeDataSlotInfo info,
JIPipeGraphNode node) |
JIPipeOutputDataSlot(JIPipeDataSlotInfo info,
JIPipeGraphNode node) |
| Modifier and Type | Method and Description |
|---|---|
default JIPipeDataContext |
JIPipeDataContext.branch(JIPipeGraphNode source)
Returns a new context that contains the current one as predecessor
|
static JIPipeDataContext |
JIPipeDataContext.create(JIPipeGraphNode graphNode,
JIPipeDataContext... predecessors)
Creates a new data context
|
| Constructor and Description |
|---|
JIPipeMutableDataContext(JIPipeGraphNode source) |
| Modifier and Type | Class and Description |
|---|---|
class |
GraphWrapperAlgorithmInput |
class |
GraphWrapperAlgorithmOutput |
class |
JIPipeGraphWrapperAlgorithm
An algorithm that wraps another algorithm graph
|
class |
JIPipeNodeGroup
A sub-graph algorithm that can be defined by a user
|
class |
JsonAlgorithm
An algorithm that was imported from a Json extension.
|
| Modifier and Type | Method and Description |
|---|---|
JIPipeGraphNode |
JsonNodeInfo.duplicate(JIPipeGraphNode algorithm) |
JIPipeGraphNode |
JsonNodeInfo.newInstance() |
| Modifier and Type | Method and Description |
|---|---|
Class<? extends JIPipeGraphNode> |
JsonNodeInfo.getInstanceClass() |
| Modifier and Type | Method and Description |
|---|---|
JIPipeGraphNode |
JsonNodeInfo.duplicate(JIPipeGraphNode algorithm) |
| Modifier and Type | Method and Description |
|---|---|
default void |
JIPipeHistoryJournal.snapshotBeforeAddNode(JIPipeGraphNode node,
UUID compartment)
Create a snapshot for adding a node
|
default void |
JIPipeHistoryJournal.snapshotBeforeAddSlot(JIPipeGraphNode node,
JIPipeDataSlotInfo info,
UUID compartment)
Snapshot before adding a slot
|
default void |
JIPipeHistoryJournal.snapshotBeforeRemoveNode(JIPipeGraphNode node,
UUID compartment)
Create a snapshot for removing a node
|
default void |
JIPipeHistoryJournal.snapshotBeforeRemoveSlot(JIPipeGraphNode node,
JIPipeDataSlotInfo info,
UUID compartment)
Snapshot before adding a slot
|
| Modifier and Type | Method and Description |
|---|---|
default void |
JIPipeHistoryJournal.snapshotBeforeAddNodes(Collection<JIPipeGraphNode> nodes,
UUID compartment)
Create a snapshot for adding a node
|
default void |
JIPipeHistoryJournal.snapshotBeforeCutNodes(Set<JIPipeGraphNode> nodes,
UUID compartment)
Snapshot before cutting a compartment
|
default void |
JIPipeHistoryJournal.snapshotBeforeMoveNodes(Set<JIPipeGraphNode> nodes,
UUID compartment)
Create a snapshot for moving nodes
|
default void |
JIPipeHistoryJournal.snapshotBeforePasteNodes(Collection<JIPipeGraphNode> nodes,
UUID compartment)
Create a snapshot for adding a node
|
default void |
JIPipeHistoryJournal.snapshotBeforeRemoveNodes(Collection<JIPipeGraphNode> nodes,
UUID compartment)
Create a snapshot for adding a node
|
| Modifier and Type | Class and Description |
|---|---|
class |
LoopEndNode
Deprecated.
|
class |
LoopStartNode
Deprecated.
|
| Modifier and Type | Method and Description |
|---|---|
Set<JIPipeGraphNode> |
LoopGroup.getLoopEndNodes() |
Set<JIPipeGraphNode> |
LoopGroup.getNodes() |
| Modifier and Type | Method and Description |
|---|---|
void |
LoopGroup.setLoopEndNodes(Set<JIPipeGraphNode> loopEndNodes) |
void |
LoopGroup.setNodes(Set<JIPipeGraphNode> nodes) |
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeAlgorithm
An
JIPipeGraphNode that contains a non-empty workload. |
| Modifier and Type | Method and Description |
|---|---|
<T extends JIPipeGraphNode> |
JIPipeGraph.findFirstNodeOfType(Class<T> klass) |
| Modifier and Type | Method and Description |
|---|---|
JIPipeGraphNode |
JIPipeGraphNode.duplicate()
Copies the algorithm.
|
JIPipeGraphNode |
JIPipeNodeInfo.duplicate(JIPipeGraphNode algorithm)
Copies an existing algorithm instance
|
JIPipeGraphNode |
JIPipeGraph.findNode(String uuidOrAlias)
Finds a node by its UUID (as string) or alias ID.
|
JIPipeGraphNode |
JIPipeGraph.getEquivalentNode(JIPipeGraphNode foreign)
Returns the algorithm that has the same UUID as the foreign algorithm in the foreign graph.
|
JIPipeGraphNode |
JIPipeGraph.NodeAddedEvent.getNode() |
JIPipeGraphNode |
JIPipeGraph.NodeRemovedEvent.getNode() |
JIPipeGraphNode |
JIPipeAdaptiveParameterSettings.getNode() |
JIPipeGraphNode |
JIPipeGraphNode.NodeSlotsChangedEvent.getNode() |
JIPipeGraphNode |
JIPipeGraph.getNodeByUUID(UUID uuid)
Gets a node by its UUID
|
JIPipeGraphNode |
JIPipeGraphConnection.getSourceNode() |
JIPipeGraphNode |
JIPipeGraphConnection.getTargetNode() |
JIPipeGraphNode |
JIPipeNodeInfo.newInstance()
Creates a new node type instance
|
| Modifier and Type | Method and Description |
|---|---|
List<JIPipeGraphNode> |
JIPipeGraph.getAllPredecessorNodes(JIPipeGraphNode target,
List<JIPipeGraphNode> traversed)
Returns ALL predecessor algorithms of an algorithm.
|
Set<JIPipeGraphNode> |
JIPipeGraph.getDeactivatedNodes(boolean cascading)
Gets all algorithms and all dependent algorithms that are missing inputs or are deactivated by the user
|
Set<JIPipeGraphNode> |
JIPipeGraph.getDeactivatedNodes(Set<JIPipeGraphNode> externallySatisfied)
Gets all algorithms and all dependent algorithms that are missing inputs or are deactivated by the user
|
List<JIPipeGraphNode> |
JIPipeGraph.getDirectPredecessorNodes(JIPipeGraphNode target)
Returns DIRECT predecessor algorithms of an algorithm
|
Set<JIPipeGraphNode> |
JIPipeGraph.getGraphNodes()
Returns the set of node instances.
|
Class<? extends JIPipeGraphNode> |
JIPipeNodeInfo.getInstanceClass()
The algorithm class that is generated
|
Set<JIPipeGraphNode> |
JIPipeGraph.getNodesWithinCompartment(UUID compartmentId)
Returns the algorithms within the specified compartment ID.
|
Map<UUID,JIPipeGraphNode> |
JIPipeGraph.mergeWith(JIPipeGraph otherGraph)
Merges another graph into this graph
The input is not copied!
|
List<JIPipeGraphNode> |
JIPipeGraph.traverse()
Traverses the graph in topological order.
|
| Modifier and Type | Method and Description |
|---|---|
boolean |
JIPipeGraph.canUserDelete(JIPipeGraphNode algorithm)
Returns true if the user can delete the algorithm
|
boolean |
JIPipeGraph.containsNode(JIPipeGraphNode node)
Returns true if this graph contains the algorithm
|
protected JIPipeSlotConfiguration |
JIPipeGraphNode.copySlotConfiguration(JIPipeGraphNode other)
Copies the slot configuration from the other algorithm to this algorithm
Override this method for special configuration cases
|
JIPipeGraphNode |
JIPipeNodeInfo.duplicate(JIPipeGraphNode algorithm)
Copies an existing algorithm instance
|
String |
JIPipeGraph.generateAliasIdFor(JIPipeGraphNode node)
Generates an alias ID for a node
|
String |
JIPipeGraph.getAliasIdOf(JIPipeGraphNode node)
Gets the alias ID of a node
A unique alias ID is generated if none is assigned yet
|
List<JIPipeGraphNode> |
JIPipeGraph.getAllPredecessorNodes(JIPipeGraphNode target,
List<JIPipeGraphNode> traversed)
Returns ALL predecessor algorithms of an algorithm.
|
String |
JIPipeGraph.getCompartmentDisplayNameOf(JIPipeGraphNode node)
Returns a human-readable name of the compartment.
|
UUID |
JIPipeGraph.getCompartmentUUIDOf(JIPipeGraphNode node)
Gets the UUID of the compartment
|
List<JIPipeGraphNode> |
JIPipeGraph.getDirectPredecessorNodes(JIPipeGraphNode target)
Returns DIRECT predecessor algorithms of an algorithm
|
Set<Map.Entry<JIPipeDataSlot,JIPipeDataSlot>> |
JIPipeGraph.getEdgesBetween(JIPipeGraphNode source,
JIPipeGraphNode target)
Gets all edges between two algorithm nodes
|
JIPipeGraphNode |
JIPipeGraph.getEquivalentNode(JIPipeGraphNode foreign)
Returns the algorithm that has the same UUID as the foreign algorithm in the foreign graph.
|
UUID |
JIPipeGraph.getUUIDOf(JIPipeGraphNode node)
Gets the UUID of a node
|
Set<UUID> |
JIPipeGraph.getVisibleCompartmentUUIDsOf(JIPipeGraphNode node)
Gets the compartment UUIDs where the node is also visible inside
|
UUID |
JIPipeGraph.insertNode(JIPipeGraphNode node)
Inserts a node into the graph.
|
UUID |
JIPipeGraph.insertNode(JIPipeGraphNode node,
UUID compartment)
Inserts a node into the graph.
|
UUID |
JIPipeGraph.insertNode(UUID uuid,
JIPipeGraphNode node,
UUID compartment)
Inserts an algorithm into the graph
|
void |
JIPipeGraph.removeNode(JIPipeGraphNode node,
boolean user)
Removes an algorithm.
|
void |
JIPipeGraph.replaceNode(JIPipeGraphNode target,
JIPipeGraphNode replacement)
Replaces a node with another.
|
void |
JIPipeGraph.reportValidity(JIPipeValidationReportContext context,
JIPipeValidationReport report,
JIPipeGraphNode targetNode)
Reports the validity for the target node and its dependencies
|
void |
JIPipeGraph.reportValidity(JIPipeValidationReportContext context,
JIPipeValidationReport report,
JIPipeGraphNode targetNode,
Set<JIPipeGraphNode> satisfied)
Reports the validity for the target node and its dependencies
|
void |
JIPipeGraphNode.Serializer.serialize(JIPipeGraphNode algorithm,
com.fasterxml.jackson.core.JsonGenerator jsonGenerator,
com.fasterxml.jackson.databind.SerializerProvider serializerProvider) |
void |
JIPipeAdaptiveParameterSettings.setNode(JIPipeGraphNode node) |
void |
JIPipeGraph.setUUIDOf(JIPipeGraphNode node,
UUID uuid)
Changes the UUID of the node
|
| Modifier and Type | Method and Description |
|---|---|
JIPipeGraph |
JIPipeGraph.extract(Collection<JIPipeGraphNode> nodes,
boolean withInternal)
Copies the selected algorithms into a new graph
Connections between the nodes are kept
UUIDs are kept
|
JIPipeGraph |
JIPipeGraph.extract(Collection<JIPipeGraphNode> nodes,
boolean withInternal,
boolean skipLocked)
Copies the selected algorithms into a new graph
Connections between the nodes are kept
UUIDs are kept
|
List<LoopGroup> |
JIPipeGraph.extractLoopGroups(Set<JIPipeGraphNode> additionalLoopEnds,
Set<JIPipeGraphNode> deactivatedNodes)
Converts loop structures into equivalent group nodes
Please note that nested loops will be put into the group; only order 1 loops will be converted.
|
List<LoopGroup> |
JIPipeGraph.extractLoopGroups(Set<JIPipeGraphNode> additionalLoopEnds,
Set<JIPipeGraphNode> deactivatedNodes)
Converts loop structures into equivalent group nodes
Please note that nested loops will be put into the group; only order 1 loops will be converted.
|
JIPipeGraph |
JIPipeGraph.extractShallow(Collection<JIPipeGraphNode> nodes,
boolean withInternal,
boolean skipLocked)
Copies the selected algorithms into a new graph
Connections between the nodes are kept
UUIDs are kept
Nodes are copied shallow
|
List<JIPipeGraphNode> |
JIPipeGraph.getAllPredecessorNodes(JIPipeGraphNode target,
List<JIPipeGraphNode> traversed)
Returns ALL predecessor algorithms of an algorithm.
|
Set<JIPipeGraphNode> |
JIPipeGraph.getDeactivatedNodes(Set<JIPipeGraphNode> externallySatisfied)
Gets all algorithms and all dependent algorithms that are missing inputs or are deactivated by the user
|
void |
JIPipeGraph.removeNodes(Set<JIPipeGraphNode> nodes,
boolean user)
Removes multiple nodes at once
|
void |
JIPipeGraph.reportValidity(JIPipeValidationReportContext context,
JIPipeValidationReport report,
JIPipeGraphNode targetNode,
Set<JIPipeGraphNode> satisfied)
Reports the validity for the target node and its dependencies
|
| Constructor and Description |
|---|
JIPipeGraphNode(JIPipeGraphNode other)
Copies the input algorithm's properties into this algorithm
|
NodeAddedEvent(JIPipeGraph graph,
JIPipeGraphNode node) |
NodeRemovedEvent(JIPipeGraph graph,
JIPipeGraphNode node) |
NodeSlotsChangedEvent(JIPipeGraphNode node) |
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeIteratingAlgorithm
An
JIPipeAlgorithm that iterates through each data row. |
class |
JIPipeIteratingMissingDataGeneratorAlgorithm
An
JIPipeAlgorithm that passes incoming data to their corresponding output slots if the iteration step is complete
and otherwise runs a generator function that generates missing data items. |
class |
JIPipeMergingAlgorithm
An
JIPipeAlgorithm that applies a similar algorithm to JIPipeIteratingAlgorithm, but does create JIPipeMultiIterationStep instead. |
class |
JIPipeMissingDataGeneratorAlgorithm
An
JIPipeAlgorithm that passes incoming data to their corresponding output slots if the iteration step is complete
and otherwise runs a generator function that generates missing data items. |
class |
JIPipeParameterlessSimpleIteratingAlgorithm
An
JIPipeAlgorithm that iterates through each data row. |
class |
JIPipeParameterSlotAlgorithm
An
JIPipeAlgorithm that has an optional slot that allows to supply parameter data sets. |
class |
JIPipeSimpleIteratingAlgorithm
An
JIPipeAlgorithm that iterates through each data row. |
class |
JIPipeSingleIterationAlgorithm
An
JIPipeAlgorithm that applies a single iteration with a iteration step containing all data. |
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeAnnotationGraphNode
A node that is an annotation
Nodes of this type are rendered by
JIPipeDesktopAnnotationGraphNodeUI instead of JIPipeDesktopGraphNodeUI and have a custom size information |
| Modifier and Type | Method and Description |
|---|---|
JIPipeGraphNode |
ExistingCompartmentDatabaseEntry.getCompartment() |
JIPipeGraphNode |
ExistingPipelineNodeDatabaseEntry.getGraphNode() |
| Constructor and Description |
|---|
ExistingPipelineNodeDatabaseEntry(String id,
JIPipeGraphNode graphNode) |
| Modifier and Type | Method and Description |
|---|---|
JIPipeGraphNode |
JIPipeJavaNodeInfo.duplicate(JIPipeGraphNode algorithm) |
JIPipeGraphNode |
JIPipeEmptyNodeInfo.duplicate(JIPipeGraphNode algorithm) |
JIPipeGraphNode |
JIPipeJavaNodeInfo.newInstance() |
JIPipeGraphNode |
JIPipeEmptyNodeInfo.newInstance() |
| Modifier and Type | Method and Description |
|---|---|
Class<? extends JIPipeGraphNode> |
JIPipeMutableNodeInfo.getInstanceClass() |
Class<? extends JIPipeGraphNode> |
JIPipeEmptyNodeInfo.getInstanceClass() |
| Modifier and Type | Method and Description |
|---|---|
JIPipeGraphNode |
JIPipeJavaNodeInfo.duplicate(JIPipeGraphNode algorithm) |
JIPipeGraphNode |
JIPipeEmptyNodeInfo.duplicate(JIPipeGraphNode algorithm) |
| Modifier and Type | Method and Description |
|---|---|
static List<JIPipeNodeMenuLocation> |
JIPipeJavaNodeInfo.getAliasesOf(Class<? extends JIPipeGraphNode> klass)
Gets alternative menu locations
|
static JIPipeNodeTypeCategory |
JIPipeJavaNodeInfo.getCategoryOf(Class<? extends JIPipeGraphNode> klass)
Returns the category of an algorithm
|
static HTMLText |
JIPipeJavaNodeInfo.getDescriptionOf(Class<? extends JIPipeGraphNode> klass)
Returns the description of an algorithm
|
static String |
JIPipeJavaNodeInfo.getMenuPathOf(Class<? extends JIPipeGraphNode> klass)
Returns the menu path of the algorithm
|
static String |
JIPipeJavaNodeInfo.getNameOf(Class<? extends JIPipeGraphNode> klass)
Returns the name of an algorithm
|
void |
JIPipeMutableNodeInfo.setnodeClass(Class<? extends JIPipeGraphNode> nodeClass)
Sets the algorithm class
|
| Constructor and Description |
|---|
JIPipeJavaNodeInfo(String id,
Class<? extends JIPipeGraphNode> nodeClass)
Creates a new node type info
|
| Modifier and Type | Method and Description |
|---|---|
JIPipeGraphNode |
JIPipeMultiIterationStep.getNode() |
JIPipeGraphNode |
JIPipeIterationStep.getNode()
The node that the iteration step is working on
|
JIPipeGraphNode |
JIPipeSingleIterationStep.getNode() |
JIPipeGraphNode |
JIPipeMultiIterationStepGenerator.getNode() |
| Modifier and Type | Method and Description |
|---|---|
void |
JIPipeMultiIterationStepGenerator.setNode(JIPipeGraphNode node) |
JIPipeDataSlot |
JIPipeMultiIterationStep.toDummySlot(JIPipeDataSlotInfo info,
JIPipeGraphNode node,
JIPipeDataSlot sourceSlot,
JIPipeProgressInfo progressInfo)
Creates a new dummy slot that contains the data of one input slot and the annotations of this batch
|
JIPipeDataSlot |
JIPipeSingleIterationStep.toDummySlot(JIPipeDataSlotInfo info,
JIPipeGraphNode node,
JIPipeDataSlot sourceSlot,
JIPipeProgressInfo progressInfo)
Creates a new dummy slot that contains the data of one input slot and the annotations of this batch
|
| Constructor and Description |
|---|
JIPipeMultiIterationStep(JIPipeGraphNode node)
Creates a new interface
|
JIPipeSingleIterationStep(JIPipeGraphNode node)
Creates a new interface
|
| Modifier and Type | Method and Description |
|---|---|
Set<JIPipeGraphNode> |
JIPipeProject.getDeactivatedAlgorithms()
Returns a list of all nodes that cannot be executed or are deactivated by the user.
|
Set<JIPipeGraphNode> |
JIPipeProject.getIntermediateAlgorithms()
Returns all nodes that have at least one connected algorithm that uses its generated data.
|
| Modifier and Type | Method and Description |
|---|---|
void |
JIPipeProject.reportValidity(JIPipeValidationReportContext context,
JIPipeValidationReport report,
JIPipeGraphNode targetNode)
Reports the validity for the target node and its dependencies
|
| Modifier and Type | Method and Description |
|---|---|
com.google.common.collect.Multimap<Class<? extends JIPipeGraphNode>,JIPipeNodeInfo> |
JIPipeNodeRegistry.getRegisteredNodeClasses() |
| Modifier and Type | Method and Description |
|---|---|
Set<JIPipeNodeInfo> |
JIPipeNodeRegistry.getNodeInfosFromClass(Class<? extends JIPipeGraphNode> klass)
Returns all node infos that create a node of the specified class
|
| Constructor and Description |
|---|
JIPipeJavaNodeRegistrationTask(String id,
Class<? extends JIPipeGraphNode> nodeClass,
JIPipeDependency source,
URL icon)
Creates a new registration task
|
| Modifier and Type | Method and Description |
|---|---|
List<JIPipeGraphNode> |
JIPipeProjectRunSet.resolveNodes(JIPipeProject project) |
| Modifier and Type | Method and Description |
|---|---|
boolean |
JIPipeGraphRun.runtimePartitionEquals(JIPipeGraphNode node1,
JIPipeGraphNode node2) |
| Modifier and Type | Method and Description |
|---|---|
void |
JIPipeGraphRunDataFlowGraph.addGraph(JIPipeGraph graph,
Set<JIPipeGraphNode> nodeFilter) |
void |
JIPipeGraphRunGCGraph.addGraph(JIPipeGraph graph,
Set<JIPipeGraphNode> nodeFilter) |
void |
JIPipeProjectRunSet.addNodes(Set<JIPipeGraphNode> nodes,
JIPipeProjectRunSetsConfiguration configuration) |
void |
JIPipeProjectRunSet.removeNodes(Set<JIPipeGraphNode> nodes,
JIPipeProjectRunSetsConfiguration configuration) |
| Constructor and Description |
|---|
JIPipeGraphRunDataFlowGraph(JIPipeGraph graph,
Set<JIPipeGraphNode> nodeFilter) |
JIPipeGraphRunGCGraph(JIPipeGraph graph,
Set<JIPipeGraphNode> nodeFilter) |
| Constructor and Description |
|---|
GraphNodeSlotValidationReportContext(JIPipeGraphNode graphNode,
String slotName,
JIPipeSlotType slotType) |
GraphNodeSlotValidationReportContext(JIPipeValidationReportContext parent,
JIPipeGraphNode graphNode,
String slotName,
JIPipeSlotType slotType) |
GraphNodeValidationReportContext(JIPipeGraphNode graphNode) |
GraphNodeValidationReportContext(JIPipeValidationReportContext parent,
JIPipeGraphNode graphNode) |
| Modifier and Type | Method and Description |
|---|---|
BiConsumer<JIPipeGraphNode,JIPipeDesktopGraphCanvasUI> |
JIPipeDesktopNodeQuickAction.getWorkload() |
| Constructor and Description |
|---|
JIPipeDesktopNodeQuickAction(String name,
String description,
String icon,
String buttonIcon,
String buttonText,
BiConsumer<JIPipeGraphNode,JIPipeDesktopGraphCanvasUI> workload) |
| Modifier and Type | Method and Description |
|---|---|
void |
JIPipeDesktopProjectWorkbench.runCacheIntermediateResults(JIPipeGraphNode algorithm) |
void |
JIPipeDesktopProjectWorkbench.runUpdateCache(JIPipeGraphNode algorithm) |
void |
JIPipeDesktopProjectWorkbench.runUpdateCacheLater(JIPipeGraphNode algorithm) |
| Constructor and Description |
|---|
JIPipeDesktopDataBatchAssistantUI(JIPipeDesktopProjectWorkbench workbenchUI,
JIPipeGraphNode algorithm,
Runnable runUpdatePredecessorCache) |
JIPipeDesktopDataBatchUI(JIPipeDesktopProjectWorkbench workbenchUI,
JIPipeGraphNode node,
JIPipeMultiIterationStep batch) |
| Modifier and Type | Method and Description |
|---|---|
Component |
JIPipeDesktopBookmarkedNodeListCellRenderer.getListCellRendererComponent(JList<? extends JIPipeGraphNode> list,
JIPipeGraphNode node,
int index,
boolean isSelected,
boolean cellHasFocus) |
| Modifier and Type | Method and Description |
|---|---|
Component |
JIPipeDesktopBookmarkedNodeListCellRenderer.getListCellRendererComponent(JList<? extends JIPipeGraphNode> list,
JIPipeGraphNode node,
int index,
boolean isSelected,
boolean cellHasFocus) |
| Constructor and Description |
|---|
JIPipeDesktopBookmarkListPanel(JIPipeDesktopWorkbench workbench,
JIPipeGraph graph,
AbstractJIPipeDesktopGraphEditorUI graphEditorUI,
Set<JIPipeGraphNode> selectedNodes) |
| Modifier and Type | Method and Description |
|---|---|
JIPipeGraphNode |
JIPipeDesktopAlgorithmCacheBrowserUI.getGraphNode() |
JIPipeGraphNode |
JIPipeDesktopCachedDataDisplayCacheControl.getNode() |
| Constructor and Description |
|---|
JIPipeDesktopAlgorithmCacheBrowserOutputSelectorUI(JIPipeGraphNode graphNode) |
JIPipeDesktopAlgorithmCacheBrowserUI(JIPipeDesktopProjectWorkbench workbenchUI,
JIPipeGraphNode graphNode,
JIPipeDesktopGraphCanvasUI graphCanvasUI) |
JIPipeDesktopCachedDataDisplayCacheControl(JIPipeDesktopProjectWorkbench workbench,
JToolBar toolBar,
JIPipeGraphNode node) |
| Constructor and Description |
|---|
JIPipeDesktopImportCachedSlotOutputRun(JIPipeProject project,
JIPipeGraphNode graphNode,
Path inputFolder) |
| Modifier and Type | Method and Description |
|---|---|
JIPipeGraphNode |
JIPipeDesktopRunSingleAlgorithmWindow.getAlgorithm() |
JIPipeGraphNode |
JIPipeDesktopRunSingleAlgorithmSettingsPanel.getNode() |
| Constructor and Description |
|---|
JIPipeDesktopRunSingleAlgorithmWindow(org.scijava.Context context,
Class<? extends JIPipeGraphNode> selectedNode) |
| Constructor and Description |
|---|
JIPipeDesktopCollectTraceRun(JIPipeDesktopProjectWorkbench workbench,
JIPipeGraphNode targetNode,
String targetSlotName,
UUID targetNodeUUID,
JIPipeDataTable targetTable,
int targetTableRow) |
JIPipeDesktopDataTracerUI(JIPipeDesktopProjectWorkbench workbench,
JIPipeGraphNode targetNode,
String targetSlotName,
UUID targetNodeUUID,
JIPipeDataTable targetTable,
int targetTableRow) |
| Modifier and Type | Method and Description |
|---|---|
<T extends JIPipeGraphNode> |
JIPipeDesktopGraphCanvasUI.getNodeUIsFor(Set<T> nodes) |
| Modifier and Type | Method and Description |
|---|---|
com.google.common.collect.BiMap<JIPipeGraphNode,JIPipeDesktopGraphNodeUI> |
JIPipeDesktopGraphCanvasUI.getNodeUIs() |
Set<JIPipeGraphNode> |
JIPipeDesktopGraphCanvasUI.getScheduledSelection() |
Set<JIPipeGraphNode> |
JIPipeDesktopGraphCanvasUI.getSelectedNodes() |
Set<JIPipeGraphNode> |
JIPipeDesktopGraphCanvasUI.getVisibleNodes() |
Map<UUID,JIPipeGraphNode> |
JIPipeDesktopGraphCanvasUI.pasteNodes(JIPipeGraph graph) |
Map<UUID,JIPipeGraphNode> |
JIPipeDesktopGraphCanvasUI.pasteNodes(String json) |
| Modifier and Type | Method and Description |
|---|---|
void |
JIPipeDesktopGraphCanvasUI.setScheduledSelection(Set<JIPipeGraphNode> scheduledSelection) |
| Modifier and Type | Method and Description |
|---|---|
JIPipeGraphNode |
JIPipeDesktopGraphNodeUI.getNode() |
| Constructor and Description |
|---|
JIPipeDesktopGraphNodeUI(JIPipeDesktopWorkbench workbench,
JIPipeDesktopGraphCanvasUI graphCanvasUI,
JIPipeGraphNode node)
Creates a new UI
|
| Constructor and Description |
|---|
JIPipeDesktopGraphNodeSlotEditorUI(AbstractJIPipeDesktopGraphEditorUI editorUI,
JIPipeGraphNode node) |
| Constructor and Description |
|---|
JIPipeDesktopCompartmentsParametersPanel(JIPipeDesktopProjectWorkbench desktopWorkbench,
JIPipeDesktopGraphCanvasUI canvas,
JIPipeGraphNode node) |
| Constructor and Description |
|---|
JIPipeDesktopPipelineParametersPanel(JIPipeDesktopWorkbench desktopWorkbench,
JIPipeDesktopGraphCanvasUI canvas,
JIPipeGraphNode node) |
| Modifier and Type | Method and Description |
|---|---|
List<JIPipeGraphNode> |
JIPipeDesktopQuickRun.getTargetNodeCopies() |
List<JIPipeGraphNode> |
JIPipeDesktopQuickRun.getTargetNodes() |
| Constructor and Description |
|---|
JIPipeDesktopQuickRun(JIPipeProject project,
JIPipeGraphNode targetNode,
JIPipeDesktopQuickRunSettings settings) |
| Constructor and Description |
|---|
JIPipeDesktopQuickRun(JIPipeProject project,
List<JIPipeGraphNode> targetNodes,
JIPipeDesktopQuickRunSettings settings) |
| Modifier and Type | Method and Description |
|---|---|
static void |
JIPipeDesktopRunSetsListEditor.createRunSetsManagementContextMenu(JMenu menu,
Set<JIPipeGraphNode> nodes,
JIPipeDesktopWorkbench workbench) |
| Modifier and Type | Method and Description |
|---|---|
Set<JIPipeGraphNode> |
JIPipeDesktopParameterKeyPickerUI.getNodeInstances() |
| Modifier and Type | Method and Description |
|---|---|
static JIPipeDesktopAddAlgorithmSlotPanel |
JIPipeDesktopAddAlgorithmSlotPanel.showDialog(Component parent,
JIPipeHistoryJournal historyJournal,
JIPipeGraphNode algorithm,
JIPipeSlotType slotType)
Shows a dialog for adding slots
|
| Modifier and Type | Method and Description |
|---|---|
void |
JIPipeDesktopParameterKeyPickerUI.setNodeInstances(Set<JIPipeGraphNode> nodeInstances) |
static List<JIPipeDesktopParameterKeyPickerUI.ParameterEntry> |
JIPipeDesktopParameterKeyPickerUI.showPickerDialog(Component parent,
String title,
Set<JIPipeGraphNode> nodeInstances,
Object preselected)
Picks a node or parameter
|
| Constructor and Description |
|---|
JIPipeDesktopAddAlgorithmSlotPanel(JIPipeGraphNode algorithm,
JIPipeSlotType slotType,
JIPipeHistoryJournal historyJournal) |
| Modifier and Type | Method and Description |
|---|---|
JIPipeGraphNode |
JIPipeDesktopPickNodeDialog.getSelectedNode() |
static JIPipeGraphNode |
JIPipeDesktopPickNodeDialog.showDialog(Component parent,
Set<JIPipeGraphNode> algorithms,
JIPipeGraphNode preSelected,
String title)
Shows a dialog for selecting an algorithm
|
| Modifier and Type | Method and Description |
|---|---|
void |
JIPipeDesktopPickNodeDialog.setSelectedNode(JIPipeGraphNode selectedNode) |
static JIPipeGraphNode |
JIPipeDesktopPickNodeDialog.showDialog(Component parent,
Set<JIPipeGraphNode> algorithms,
JIPipeGraphNode preSelected,
String title)
Shows a dialog for selecting an algorithm
|
| Modifier and Type | Method and Description |
|---|---|
static JIPipeGraphNode |
JIPipeDesktopPickNodeDialog.showDialog(Component parent,
Set<JIPipeGraphNode> algorithms,
JIPipeGraphNode preSelected,
String title)
Shows a dialog for selecting an algorithm
|
| Constructor and Description |
|---|
JIPipeDesktopPickNodeDialog(Window parent,
Set<JIPipeGraphNode> nodes,
JIPipeGraphNode preSelected) |
| Constructor and Description |
|---|
JIPipeDesktopPickNodeDialog(Window parent,
Set<JIPipeGraphNode> nodes,
JIPipeGraphNode preSelected) |
| Modifier and Type | Method and Description |
|---|---|
Component |
JIPipeDesktopAlgorithmListCellRenderer.getListCellRendererComponent(JList<? extends JIPipeGraphNode> list,
JIPipeGraphNode value,
int index,
boolean isSelected,
boolean cellHasFocus) |
| Modifier and Type | Method and Description |
|---|---|
Component |
JIPipeDesktopAlgorithmListCellRenderer.getListCellRendererComponent(JList<? extends JIPipeGraphNode> list,
JIPipeGraphNode value,
int index,
boolean isSelected,
boolean cellHasFocus) |
| Constructor and Description |
|---|
JIPipeDesktopInheritedSlotListCellRenderer(JIPipeGraphNode algorithm) |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateByExpression
Algorithm that annotates all data with the same annotation
|
class |
AnnotateByProjectPaths |
class |
AnnotateWithAnnotationTable
Algorithm that merges the annotations of all inputs and outputs the data with the shared annotations
|
class |
AnnotateWithData |
class |
AnnotateWithDataString
Generates annotations from filenames
|
class |
AnnotateWithSourceSlot
Generates annotations from filenames
|
class |
ConvertToAnnotationTable
Removes a specified annotation
|
class |
DataAnnotationToStringAnnotation |
class |
ExtractAndReplaceAnnotation
Generates annotations from filenames
|
class |
ExtractDataAnnotation |
class |
FilterByAnnotation
Algorithm that splits the input data by a specified annotation
|
class |
FilterByAnnotationIfElse
Algorithm that splits the input data by a specified annotation
|
class |
GenerateRandomUniqueAnnotation
Generates annotations from filenames
|
class |
GenerateUniqueAnnotation
Generates annotations from filenames
|
class |
MergeAnnotations
Algorithm that merges the annotations of all inputs and outputs the data with the shared annotations
|
class |
MergeDataSlots
Merges the input slot tables into one data slot
|
class |
ModifyAnnotationScript
Algorithm that annotates all data with the same annotation
|
class |
OverwriteAnnotations |
class |
RemoveAnnotationAlgorithm
Removes a specified annotation
|
class |
RemoveArrayAnnotationsAlgorithm |
class |
RemoveDataAnnotations |
class |
RemoveNAAnnotationColumnsAlgorithm |
class |
RenameAnnotation
Generates annotations from filenames
|
class |
RenameDataAnnotation
Generates annotations from filenames
|
class |
SetSingleAnnotation
Algorithm that annotates all data with the same annotation
|
class |
SimplifyAnnotationsAlgorithm |
class |
SplitByAnnotation
Algorithm that splits the input data by a specified annotation
|
class |
SplitByAnnotationScript
Algorithm that annotates all data with the same annotation
|
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotationTableFromFile
Imports
AnnotationTableData from a file |
| Modifier and Type | Class and Description |
|---|---|
class |
ImportCellposeModelFromFileAlgorithm |
class |
ImportCellposeSizeModelFromFileAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
Cellpose2SegmentationInferenceAlgorithm |
class |
Cellpose2TrainingAlgorithm |
class |
ImportPretrainedCellpose2ModelAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
Cellpose3DenoiseInferenceAlgorithm |
class |
Cellpose3DenoiseTrainingAlgorithm |
class |
Cellpose3SegmentationInferenceAlgorithm |
class |
Cellpose3SegmentationTrainingAlgorithm |
class |
ImportPretrainedCellpose3DenoiseModelAlgorithm |
class |
ImportPretrainedCellpose3SegmentationModelAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
Cellpose1InferenceAlgorithm
Deprecated.
New implementation will be CellposeAlgorithm2 that is based around the Cellpose CLI
|
class |
Cellpose1TrainingAlgorithm
Deprecated.
|
class |
ImportLegacyCellposeModelAlgorithm
Deprecated.
|
class |
ImportLegacyCellposeSizeModelAlgorithm
Deprecated.
|
class |
LegacyCellpose2InferenceAlgorithm
Deprecated.
|
class |
LegacyCellpose2TrainingAlgorithm
Deprecated.
|
| Modifier and Type | Method and Description |
|---|---|
static void |
CellposeUtils.saveInputImages(JIPipeInputDataSlot inputSlot,
Set<Integer> inputRows,
boolean enable3D,
boolean enableMultiChannel,
Path io2DPath,
Path io3DPath,
List<CellposeImageInfo> runWith2D,
List<CellposeImageInfo> runWith3D,
JIPipeGraphNode executingNode,
JIPipeProgressInfo progressInfo) |
| Modifier and Type | Class and Description |
|---|---|
class |
CLIJCommandNode |
| Modifier and Type | Method and Description |
|---|---|
JIPipeGraphNode |
CLIJCommandNodeInfo.duplicate(JIPipeGraphNode algorithm) |
JIPipeGraphNode |
CLIJCommandNodeInfo.newInstance() |
| Modifier and Type | Method and Description |
|---|---|
Class<? extends JIPipeGraphNode> |
CLIJCommandNodeInfo.getInstanceClass() |
| Modifier and Type | Method and Description |
|---|---|
JIPipeGraphNode |
CLIJCommandNodeInfo.duplicate(JIPipeGraphNode algorithm) |
| Modifier and Type | Class and Description |
|---|---|
class |
Clij2ExecuteKernelIterating |
class |
Clij2ExecuteKernelSimpleIterating |
class |
Clij2PullAlgorithm |
class |
Clij2PushAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeCommentNode |
| Modifier and Type | Method and Description |
|---|---|
static JIPipeGraphNode |
JIPipeExpressionVariablesInfo.findNode(JIPipeParameterTree parameterTree,
JIPipeParameterAccess parameterAccess)
Helper method that attempts to find the underlying graph node of a parameter access
|
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateWithPathProperties |
class |
AnnotationTableToPaths
Filters input files
|
class |
AnnotationToPath
Filters input files
|
class |
ConcatenateByParameter
Applies subfolder navigation to each input folder
|
class |
ConcatenatePaths
Applies subfolder navigation to each input folder
|
class |
ConvertDataToOutputPath
Applies subfolder navigation to each input folder
|
class |
ConvertToExportedPath |
class |
CopyPath
Applies subfolder navigation to each input folder
|
class |
CreateDirectory
Applies subfolder navigation to each input folder
|
class |
ExportData |
class |
ExportDataByParameter |
class |
ExportDataByParameter2 |
class |
ExportDataTable |
class |
ExportDataTableByParameter |
class |
ExtractFileName
Applies subfolder navigation to each input folder
|
class |
ExtractParent
Applies subfolder navigation to each input folder
|
class |
FilterPaths
Filters input files
|
class |
ImportDataRowFolder |
class |
ImportDataTableArchive |
class |
ImportDataTableDirectory |
class |
ListFiles
Algorithm that lists files in each folder
|
class |
ListSubfolders
Algorithms that lists the sub folders for each input folder
|
class |
ModifyPath |
class |
ModifyPathWithExpression |
class |
RelativizeByParameter
Applies subfolder navigation to each input folder
|
class |
RelativizePaths
Applies subfolder navigation to each input folder
|
class |
RenameByString
Applies subfolder navigation to each input folder
|
class |
SimpleFileAnnotationGenerator
Generates annotations from filenames
|
class |
SimpleFolderAnnotationGenerator
Algorithm that generates annotations from folder names
|
class |
SimplePathAnnotationGenerator
Algorithm that generates annotations from folder names
|
| Modifier and Type | Class and Description |
|---|---|
class |
ListZARRDirectoryZIPDatasetsAlgorithm |
class |
ListZARRURIDatasetsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
DownloadFilesDataSource |
class |
FileDataSource
Provides an input file
|
class |
FileListDataSource
Provides an input file
|
class |
FolderDataSource
Provides an input folder
|
class |
FolderListDataSource
Provides an input folder
|
class |
OutputFolderDataSource |
class |
PathDataSource
Provides an input file
|
class |
PathFromUserDataSource |
class |
PathListDataSource
Provides an input folder
|
class |
ProjectUserFolderDataSource |
class |
TemporaryFileDataSource |
class |
TemporaryFolderDataSource |
class |
URIListDataSource |
| Modifier and Type | Class and Description |
|---|---|
class |
FormGeneratorAlgorithm
A node base class that adds a new form element into the list of existing forms
|
class |
IteratingFormProcessorAlgorithm |
class |
MergingFormProcessorAlgorithm |
class |
SimpleFormGeneratorAlgorithm |
class |
SimpleIteratingFormProcessorAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
BooleanFormGeneratorAlgorithm |
class |
DoubleFormGeneratorAlgorithm |
class |
EnumFormGeneratorAlgorithm |
class |
GroupHeaderFormGeneratorAlgorithm |
class |
IntegerFormGeneratorAlgorithm |
class |
PathFormGeneratorAlgorithm |
class |
StringFormGeneratorAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
AbstractTextBoxAnnotationGraphNode |
class |
ArrowAnnotationGraphNode |
class |
GroupBoxAnnotationGraphNode |
class |
ImageBoxAnnotationGraphNode |
class |
TextBoxAnnotationGraphNode |
| Modifier and Type | Class and Description |
|---|---|
class |
ImportROI3DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
DistanceMap3DAlgorithm |
class |
ErodedVolumeFraction3DAlgorithm |
class |
Voronoi3DAlgorithm |
class |
Watershed3DSplittingAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
EdgeFilter3DAlgorithm |
class |
FindMaxima3DAlgorithm |
class |
SymmetryFilter3DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
Fast3DFiltersAdaptiveAlgorithm |
class |
Fast3DFiltersAlgorithm |
class |
Fast3DFiltersCloseAlgorithm |
class |
Fast3DFiltersLocalMaxAlgorithm |
class |
Fast3DFiltersMaxAlgorithm |
class |
Fast3DFiltersMeanAlgorithm |
class |
Fast3DFiltersMedianAlgorithm |
class |
Fast3DFiltersMinAlgorithm |
class |
Fast3DFiltersOpenAlgorithm |
class |
Fast3DFiltersSobelAlgorithm |
class |
Fast3DFiltersTopHatAlgorithm |
class |
Fast3DFiltersVarianceAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ExtractOverlay3DAlgorithm |
class |
RemoveOverlay3DAlgorithm |
class |
RenderOverlay3DAlgorithm
Wrapper around
RoiDrawer |
class |
SetOverlay3DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ExportROI3DAlgorithm
Deprecated.
|
class |
ExportROI3DAlgorithm2 |
| Modifier and Type | Class and Description |
|---|---|
class |
Roi2DToRoi3DConverterAlgorithm |
class |
Roi3DTo3DMeshAlgorithm |
class |
Roi3DToLabelsAlgorithm |
class |
Roi3DToMaskAlgorithm |
class |
Roi3DToRGBAlgorithm |
class |
Roi3DToRoi2DConverterAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
FilterRoi3DByOverlapAlgorithm |
class |
FilterRoi3DByStatisticsAlgorithm
Wrapper around
RoiManager |
class |
FilterRoi3DListsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
FindParticles3DAlgorithm |
class |
Roi3DFromLabelsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ExtractRoi3DRelationStatisticsAlgorithm |
class |
ExtractRoi3DStatisticsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
MergeROI3DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ExtractROI3DMetadataAlgorithm |
class |
RemoveROI3DMetadataAlgorithm |
class |
SetROI3DMetadataFromTableAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ChangeRoi3DPropertiesAlgorithm |
class |
ChangeRoi3DPropertiesFromExpressionsAlgorithm |
class |
ChangeRoi3DPropertiesFromTableAlgorithm |
class |
ColorRoi3DByNameAlgorithm |
class |
ColorRoi3DByStatisticsAlgorithm
Wrapper around
RoiManager |
class |
ROI3DCalculatorAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
OutlineRoi3DAlgorithm
Wrapper around
RoiManager |
class |
RemoveBorderRoi3DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ExplodeRoi3DListAlgorithm |
class |
SplitRoi3DIntoConnectedComponentsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ConstantSpotSegmentation3DAlgorithm |
class |
DifferenceSpotSegmentation3DAlgorithm |
class |
GaussianFitSpotSegmentation3DAlgorithm |
class |
HysteresisSegmentation3DAlgorithm |
class |
IterativeThreshold3DAlgorithm |
class |
LocalMeanSpotSegmentation3DAlgorithm |
class |
NucleiSegmentation3DAlgorithm |
class |
SpotSegmentation3DAlgorithm |
class |
Watershed3DSegmentationAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ConvertFilamentCyclesToROIAlgorithm |
class |
ConvertFilamentsTo3DMeshAlgorithm |
class |
ConvertFilamentsToLabels2Algorithm |
class |
ConvertFilamentsToLabelsAlgorithm |
class |
ConvertFilamentsToMaskAlgorithm |
class |
ConvertFilamentsToRGBAlgorithm |
class |
ConvertFilamentsToRoi3DAlgorithm |
class |
ConvertFilamentsToRoiAlgorithm |
class |
ConvertROIToFilamentsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
FilterFilamentEdgesByProperties |
class |
FilterFilamentsByProperties |
class |
FilterFilamentVerticesByProperties |
class |
RemoveBorderFilaments |
| Modifier and Type | Class and Description |
|---|---|
class |
ImportFilamentsFromJsonAlgorithm |
class |
SkeletonToFilaments2DAlgorithm |
class |
SkeletonToFilaments3DAlgorithm |
class |
SkeletonToSimplifiedFilamentsFijiAlgorithm |
class |
TSOAX2DAlgorithm |
class |
TSOAX3DAlgorithm |
class |
TSOAXAlgorithm |
class |
TSOAXResultAnalysisAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
MeasureEdgesAlgorithm |
class |
MeasureFilamentsAlgorithm |
class |
MeasureVerticesAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
MergeFilamentsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ChangeFilamentEdgePropertiesExpressionAlgorithm |
class |
ChangeFilamentEdgePropertiesManuallyAlgorithm |
class |
ChangeFilamentVertexPropertiesExpressionAlgorithm |
class |
ChangeFilamentVertexPropertiesManuallyAlgorithm |
class |
ConnectVerticesAlgorithm |
class |
ConnectVerticesFastAlgorithm |
class |
ErodeEndVerticesAlgorithm |
class |
FilamentCyclesToComponentsAlgorithm |
class |
FindLinearFilamentVertexOrderAlgorithm |
class |
FlattenFilamentsAlgorithm |
class |
GrowEndVerticesAlgorithm |
class |
RemoveVertexValueBackupsAlgorithm |
class |
RestoreVertexValueBackupAlgorithm |
class |
SetFilamentMetadataToComponentIndexAlgorithm |
class |
SetVertexMetadataFromImageAlgorithm |
class |
SetVertexPhysicalSizeFromImageAlgorithm |
class |
SetVertexRadiusFromImageAlgorithm |
class |
SetVertexValueFromImageAlgorithm |
class |
SubdivideFilamentEdges |
| Modifier and Type | Class and Description |
|---|---|
class |
SetOverlayFilamentsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
CopyFilamentsAcrossZCTAlgorithm |
class |
FixOverlapsNonBranchingAlgorithm |
class |
RemoveDuplicateVerticesAlgorithm |
class |
SimplifyFilamentsAlgorithm |
class |
SmoothFilamentsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
SplitFilamentsIntoConnectedComponentsAlgorithm |
class |
SplitFilamentsIntoCyclesAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
MultiTemplateMatchingAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
TesseractOCRAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ConvertSpotsToRoiNode |
class |
ConvertTracksToRoiNode |
| Modifier and Type | Class and Description |
|---|---|
class |
CreateSpotDetectorNode |
class |
CreateSpotTrackerNode |
| Modifier and Type | Method and Description |
|---|---|
JIPipeGraphNode |
CreateSpotDetectorNodeInfo.duplicate(JIPipeGraphNode algorithm) |
JIPipeGraphNode |
CreateSpotTrackerNodeInfo.duplicate(JIPipeGraphNode algorithm) |
JIPipeGraphNode |
CreateSpotDetectorNodeInfo.newInstance() |
JIPipeGraphNode |
CreateSpotTrackerNodeInfo.newInstance() |
| Modifier and Type | Method and Description |
|---|---|
Class<? extends JIPipeGraphNode> |
CreateSpotDetectorNodeInfo.getInstanceClass() |
Class<? extends JIPipeGraphNode> |
CreateSpotTrackerNodeInfo.getInstanceClass() |
| Modifier and Type | Method and Description |
|---|---|
JIPipeGraphNode |
CreateSpotDetectorNodeInfo.duplicate(JIPipeGraphNode algorithm) |
JIPipeGraphNode |
CreateSpotTrackerNodeInfo.duplicate(JIPipeGraphNode algorithm) |
| Modifier and Type | Class and Description |
|---|---|
class |
MeasureSpotsNode |
class |
MergeSpotsNode |
class |
SplitSpotsNode |
class |
SpotDetectorNode |
class |
SpotFilterNode |
class |
SpotsToRGBNode |
| Modifier and Type | Class and Description |
|---|---|
class |
FollowSpotsPerTrackNode |
class |
MeasureBranchesNode |
class |
MeasureEdgesNode |
class |
MeasureTracksNode |
class |
MergeTracksNode |
class |
SplitTracksNode |
class |
TrackFilterNode |
class |
TrackingNode |
class |
TrackSchemeRendererNode |
class |
TracksToRGBNode |
| Modifier and Type | Class and Description |
|---|---|
class |
ImportWekaModelFromFileAlgorithm |
class |
WekaClassification2DAlgorithm |
class |
WekaClassification3DAlgorithm |
class |
WekaTrainingLabels2DAlgorithm |
class |
WekaTrainingLabels2DAlgorithm2 |
class |
WekaTrainingMask2DAlgorithm |
class |
WekaTrainingMask2DAlgorithm2 |
class |
WekaTrainingROI2DAlgorithm |
class |
WekaTrainingROI3DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ExportIlastikHDF5ImageAlgorithm |
class |
IlastikAutoContextAlgorithm |
class |
IlastikObjectClassificationAlgorithm |
class |
IlastikPixelClassificationAlgorithm |
class |
IlastikPredictionMapsObjectClassificationAlgorithm |
class |
IlastikSegmentationImageObjectClassificationAlgorithm |
class |
ImportIlastikHDF5ImageAlgorithm |
class |
ImportIlastikModel |
| Modifier and Type | Class and Description |
|---|---|
class |
ImageJ2OpNode |
| Modifier and Type | Method and Description |
|---|---|
JIPipeGraphNode |
ImageJ2OpNodeInfo.duplicate(JIPipeGraphNode algorithm) |
JIPipeGraphNode |
ImageJ2OpNodeInfo.newInstance() |
| Modifier and Type | Method and Description |
|---|---|
Class<? extends JIPipeGraphNode> |
ImageJ2OpNodeInfo.getInstanceClass() |
| Modifier and Type | Method and Description |
|---|---|
JIPipeGraphNode |
ImageJ2OpNodeInfo.duplicate(JIPipeGraphNode algorithm) |
| Modifier and Type | Class and Description |
|---|---|
class |
CreateIJ2OutOfBoundsFactoryAlgorithm |
class |
CreateIJ2ShapeAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
MacroWrapperAlgorithm
An algorithm that wraps around an ImageJ macro
|
| Modifier and Type | Class and Description |
|---|---|
class |
AnalyzeSkeleton2D3DAlgorithm |
class |
AnnotateByImageStatisticsExpressionAlgorithm
Wrapper around
RoiManager |
class |
FindParticles2D
Converts a mask to ROI and ROI measurements
|
class |
ImageStatisticsAlgorithm
Wrapper around
RoiManager |
class |
ImageStatisticsExpressionAlgorithm
Wrapper around
RoiManager |
class |
OrientationVectorField2DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
RollingBallBackgroundEstimator2DAlgorithm
Wrapper around
RankFilters |
| Modifier and Type | Class and Description |
|---|---|
class |
BinarizeAlgorithm |
class |
BitwiseLogicalOperationAlgorithm |
class |
ConditionalInverterAlgorithm |
class |
ConnectedComponentsLabeling2DAlgorithm |
class |
ConnectedComponentsLabeling3DAlgorithm |
class |
ConvexifyAlgorithm |
class |
DistanceTransformWatershed2DAlgorithm
Wrapper around
EDM |
class |
KeepLargestRegionAlgorithm |
class |
RemoveLargestRegionAlgorithm |
class |
UltimateErodedPoints2DAlgorithm
Wrapper around
EDM |
class |
VolumeOpening2DAlgorithm |
class |
VolumeOpening3DAlgorithm |
class |
Voronoi2DAlgorithm
Wrapper around
EDM |
| Modifier and Type | Class and Description |
|---|---|
class |
BoxFilter2DAlgorithm
Wrapper around
ImageProcessor |
class |
BoxFilter3DAlgorithm
Wrapper around
GaussianBlur |
class |
GaussianBlur2DAlgorithm
Wrapper around
GaussianBlur |
class |
GaussianBlur3DAlgorithm
Wrapper around
GaussianBlur |
class |
MedianBlurFilter2DAlgorithm
Wrapper around
RankFilters |
class |
MedianBlurFilter3DAlgorithm
Wrapper around
GaussianBlur |
class |
MedianBlurGreyscale8U2DAlgorithm
Wrapper around
ImageProcessor |
class |
MedianBlurRGB2DAlgorithm
Wrapper around
ImageProcessor |
| Modifier and Type | Class and Description |
|---|---|
class |
CopyPhysicalDimensionsBetweenImagesAlgorithm |
class |
DrawScaleBarAlgorithm |
class |
SetPhysicalDimensionsAlgorithm |
class |
SetPhysicalDimensionsByAnnotationsAlgorithm |
class |
SetPhysicalDimensionsByExpressionsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
Coloc2Node |
| Modifier and Type | Class and Description |
|---|---|
class |
ArrangeChannelsAlgorithm
Wrapper around
ChannelArranger |
class |
BlendImagesAlgorithm |
class |
ColorToGreyscaleExpression2D |
class |
CombineChannelsToRGBAlgorithm |
class |
InvertColorsAlgorithm
Wrapper around
ImageProcessor |
class |
MergeChannelsAlgorithm
Wrapper around
ImageProcessor |
class |
MergeHSBChannelsAlgorithm |
class |
MergeLABChannelsAlgorithm |
class |
MergeRGBChannelsAlgorithm |
class |
NewSplitChannelsAlgorithm
Wrapper around
ChannelSplitter |
class |
OverlayImagesAlgorithm
Deprecated.
Use
BlendImagesAlgorithm instead |
class |
RenderImageToRGBAlgorithm |
class |
SplitChannelsAlgorithm
Deprecated.
|
class |
SplitChannelsByTableAlgorithm
Wrapper around
ChannelSplitter |
class |
SplitRGBChannelsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
CLAHEContrastEnhancer
Applies CLAHE image enhancing
|
class |
HistogramContrastEnhancerAlgorithm
This class is based on
ContrastEnhancer
This class is not very portable, so I adapted the code here |
class |
IlluminationCorrection2DAlgorithm
Applies illumination correction
|
class |
ImageJContrastEnhancerAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ConvertImageAlgorithm |
class |
ConvertImageTo16BitAlgorithm |
class |
ConvertImageTo16BitAutoContrastAlgorithm |
class |
ConvertImageTo32BitAlgorithm |
class |
ConvertImageTo8BitAlgorithm |
class |
ConvertImageTo8BitAutoContrastAlgorithm |
class |
ConvertImageToHSBAlgorithm |
class |
ConvertImageToLABAlgorithm |
class |
ConvertImageToRGBAlgorithm |
class |
ImageToMatrixAlgorithm
Algorithm that generates
ResultsTableData as histogram |
class |
ImageToTableAlgorithm
Algorithm that generates
ResultsTableData as histogram |
class |
ImageToTableColumnAlgorithm |
class |
MatrixToImageAlgorithm |
class |
MultipleImagesToTableAlgorithm
Algorithm that generates
ResultsTableData as histogram |
class |
TableColumnToImageAlgorithm |
class |
TableToImageAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ConvolveByImage2DAlgorithm
Wrapper around
Convolver |
class |
ConvolveByParameter2DAlgorithm
Wrapper around
Convolver |
| Modifier and Type | Class and Description |
|---|---|
class |
ImageStackFromFolder
Loads an image data from a file via IJ.openFile()
|
class |
OMEImageFromImagePlus |
| Modifier and Type | Class and Description |
|---|---|
class |
CircularHoughSegmentation2DAlgorithm
Segments using a Hough circle transform
|
class |
CornerHarris2DAlgorithm |
class |
FastCircularHoughSegmentation2DAlgorithm
Segments using a Hough circle transform
This code is based on ...
|
class |
GlobalLinesHoughDetection2DAlgorithm |
class |
LineSegmentsHoughDetection2DAlgorithm |
class |
LinesHoughDetection2DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
CreateStackAlgorithm |
class |
ExpressionSlicerAlgorithm |
class |
HyperstackSlicerAlgorithm |
class |
Merge2DToHyperstackAlgorithm |
class |
NewZProjectorAlgorithm
Wrapper around
ZProjector |
class |
ReorderDimensionsAlgorithm
Algorithm that reorders Hyperstack dimensions
|
class |
ReorderHyperstackSlicesExpressionAlgorithm |
class |
ResliceAlgorithm |
class |
SplitByDimensionAlgorithm |
class |
StackCombinerAlgorithm |
class |
StackInverterAlgorithm
Wrapper around
ImageProcessor |
class |
StackSplitterAlgorithm
Wrapper around
ChannelArranger |
class |
StackTo2DAlgorithm
Wrapper around
ImageProcessor |
class |
StackToDimensionMerger2Algorithm
Wrapper around
ImageProcessor |
class |
StackToDimensionMergerAlgorithm
Wrapper around
ImageProcessor |
class |
ZProjectorAlgorithm
Wrapper around
ZProjector |
| Modifier and Type | Class and Description |
|---|---|
class |
CannyEdgeDetectorAlgorithm
This is the JIPipe version of the ImageJ plugin ...
|
class |
LaplacianEdgeDetectorAlgorithm
Wrapper around
ImageProcessor |
class |
SobelEdgeDetectorAlgorithm
Wrapper around
ImageProcessor |
| Modifier and Type | Class and Description |
|---|---|
class |
AlternatingMorphologicalFilters2DAlgorithm |
class |
DerivativesFeaturesAlgorithm |
class |
DifferenceOfGaussian2DAlgorithm
Wrapper around
GaussianBlur |
class |
DirectionalFilter2DAlgorithm |
class |
FrangiVesselnessFeatures
Applies CLAHE image enhancing
|
class |
HessianFeatureAlgorithm |
class |
LaplacianOfGaussian2DAlgorithm
Based on code by Dimiter Prodanov
...
|
class |
LocalMaxima2DAlgorithm
Wrapper around
MaximumFinder |
class |
MeijeringVesselness2DFeatures
Applies CLAHE image enhancing
|
class |
MorphologicalFeatureContrast2DAlgorithm |
class |
MorphologicalTextureContrast2DAlgorithm |
class |
OrientationFeatures2DAlgorithm |
class |
StructureFeatureAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
FFT2DForwardTransform
Applies a FFT forward transformation
|
class |
FFT2DInverseTransform
Applies a FFT forward transformation
|
class |
FFT2DSwapQuadrants
Applies a FFT forward transformation
|
class |
FFTBandPassFilter |
class |
FFTCustomFilter |
| Modifier and Type | Class and Description |
|---|---|
class |
DrawMaskAlgorithm |
class |
DrawROIAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
GenerateLUTImageFromColorMap
Wrapper around
ImageProcessor |
class |
GenerateMissingImageFromMathExpression2D
Wrapper around
ImageProcessor |
class |
GenerateMissingTablesAlgorithm
Deprecated.
|
class |
GenerateMissingTablesAlgorithm2 |
class |
GenerateMissingZeroImage
Wrapper around
ImageProcessor |
class |
GenerateStructureElement2DAlgorithm
Wrapper around
ImageProcessor |
class |
GenerateStructureElement3DAlgorithm
Wrapper around
ImageProcessor |
class |
GenerateZeroImage
Wrapper around
ImageProcessor |
class |
ImageFromMatrix2DAlgorithm
Wrapper around
Convolver |
| Modifier and Type | Class and Description |
|---|---|
class |
ExportImage2Algorithm |
class |
ExportImageAlgorithm
Deprecated.
|
class |
ExportImageDirectorySlotAlgorithm |
class |
ExportROIAlgorithm
Deprecated.
|
class |
ExportROIAlgorithm2 |
class |
ExportTableAlgorithm
Deprecated.
|
class |
ExportTableAlgorithm2 |
class |
ExportTableAsXLSXAlgorithm
Deprecated.
|
class |
ExportTableAsXLSXAlgorithm2 |
class |
ImagePlusFromGUI
Imports
ImagePlusData from the GUI |
class |
ImagePlusToGUI
Imports
ImagePlusData from the GUI |
class |
ResultsTableFromGUI
Imports
ImagePlusData from the GUI |
class |
ResultsTableToGUI
Imports
ImagePlusData from the GUI |
class |
ROIFromGUI
Imports
ImagePlusData from the GUI |
class |
ROIToGUI
Imports
ImagePlusData from the GUI |
class |
RunImageJExporterAlgorithm |
class |
RunImageJImporterAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateWithOverlapMeasureLabelsAlgorithm |
class |
CropLabelsAlgorithm |
class |
DilateLabelsAlgorithm |
class |
ExpandLabelsAlgorithm |
class |
ExtractLabelStatisticsAlgorithm |
class |
GetLabelBoundariesAlgorithm |
class |
KeepLargestLabelAlgorithm |
class |
LabelsToMaskAlgorithm |
class |
LabelsToRGBAlgorithm |
class |
LabelsToROIAlgorithm |
class |
MergeLabelsAlgorithm |
class |
MergeLabelsToBinsAlgorithm |
class |
MergeLabelsToThicknessAlgorithm |
class |
MergeSmallLabelsAlgorithm |
class |
OverlapMeasureLabelsAlgorithm |
class |
RemapLabelsAlgorithm |
class |
ReplaceLabelsAlgorithm |
class |
ReplaceLabelsByTableAlgorithm |
class |
SeparateLabelsAlgorithm |
class |
SeparateTouchingLabels2DAlgorithm |
class |
SplitLabelsConnectedComponents2DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
FilterLabelsByExpression2DAlgorithm |
class |
FilterLabelsByExpression3DAlgorithm |
class |
FilterLabelsByIdAlgorithm |
class |
FilterLabelsByMaskAlgorithm |
class |
FilterLabelsByOverlapAlgorithm |
class |
FilterLabelsByStatisticsAlgorithm
Wrapper around
RoiManager |
class |
FilterLabelsByThicknessAlgorithm |
class |
RemoveBorderLabelsAlgorithm |
class |
RemoveLargestLabelAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ApplyLUTAlgorithm |
class |
LUTInverterAlgorithm |
class |
RemoveLUTAlgorithm |
class |
SetLUTFromColorMapAlgorithm |
class |
SetLUTFromColorsAlgorithm |
class |
SetLUTFromImageAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
SetToColorAlgorithm |
class |
SetToContentAwareAlgorithm |
class |
SetToValueAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ApplyColorMathExpression2DExpression |
class |
ApplyMathExpression2DAlgorithm
Wrapper around
ImageProcessor |
class |
ApplyTransform2DAlgorithm
Wrapper around
ImageProcessor |
class |
ApplyVectorMathExpression2DAlgorithm
Wrapper around
ImageProcessor |
class |
DivideByMaximumAlgorithm
Wrapper around
ImageProcessor |
class |
FastImageArithmeticsAlgorithm |
class |
GenerateFromMathExpression2D
Wrapper around
ImageProcessor |
class |
GenerateVectorFromMathExpression
Wrapper around
ImageProcessor |
class |
Hessian2DAlgorithm
Deprecated.
|
class |
ImageCalculator2DExpression |
class |
ImageComparer2DAlgorithm
Deprecated.
|
class |
LegacyApplyMath2DAlgorithm
Deprecated.
|
class |
LegacyImageCalculator2DAlgorithm
Deprecated.
|
class |
LegacyImageCalculator2DMergingAlgorithm
Deprecated.
|
class |
RemoveNaNFilter2DAlgorithm
Wrapper around
RankFilters |
class |
RoundFloatImageAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ApplyDistanceTransform2DAlgorithm
Wrapper around
EDM |
class |
ChamferDistanceMap2DAlgorithm |
class |
ChamferDistanceMap3DAlgorithm |
class |
GeodesicDistanceMap2DAlgorithm |
class |
LabelChamferDistanceMap3DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ExtendedMaxima2DAlgorithm |
class |
ExtendedMaxima3DAlgorithm |
class |
ExtendedMinima2DAlgorithm |
class |
ExtendedMinima3DAlgorithm |
class |
ImposeMaxima2DAlgorithm |
class |
ImposeMaxima3DAlgorithm |
class |
LocalImageCalculator2DExpression |
class |
LocalMaximumFilter2DAlgorithm
Wrapper around
RankFilters |
class |
LocalMaximumFilter3DAlgorithm
Wrapper around
RankFilters |
class |
LocalMinimumFilter2DAlgorithm
Wrapper around
RankFilters |
class |
LocalMinimumFilter3DAlgorithm
Wrapper around
RankFilters |
class |
LocalVarianceFilter2DAlgorithm
Wrapper around
RankFilters |
class |
LocalVarianceFilter3DAlgorithm
Wrapper around
RankFilters |
class |
RegionalMaxima2DAlgorithm |
class |
RegionalMaxima3DAlgorithm |
class |
RegionalMinima2DAlgorithm |
class |
RegionalMinima3DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ChangeImageMetadataFromExpressionsAlgorithm
Wrapper around
RoiManager |
class |
ExtractImageMetadataAlgorithm |
class |
RemoveImageMetadataAlgorithm |
class |
SetImageMetadataFromTableAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
DataToPreviewAlgorithm |
class |
RenderJIPipeProjectAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
InputImagesToMontage
Deprecated.
|
class |
InputImagesToMontage2 |
class |
MontageToStackAlgorithm
Implementation of
MontageMaker |
class |
StackToMontage2Algorithm
Implementation of
MontageMaker |
class |
StackToMontageAlgorithm
Deprecated.
|
| Modifier and Type | Class and Description |
|---|---|
class |
FindHoles2DAlgorithm |
class |
GrayscaleAttributeFiltering2DAlgorithm |
class |
GrayscaleAttributeFiltering3DAlgorithm |
class |
MorphologicalReconstruction2DAlgorithm |
class |
MorphologicalReconstruction3DAlgorithm |
class |
Morphology2DAlgorithm
Wrapper around
ImageProcessor |
class |
Morphology3DAlgorithm
Wrapper around
ImageProcessor |
class |
MorphologyBinary2DAlgorithm
Wrapper around
ImageProcessor |
class |
MorphologyFillHoles2DAlgorithm
Wrapper around
ImageProcessor |
class |
MorphologyInternalGradient2DAlgorithm
Wrapper around
ImageProcessor |
class |
MorphologyOutline2DAlgorithm
Wrapper around
ImageProcessor |
class |
MorphologySkeletonize2DAlgorithm
Wrapper around
ImageProcessor |
class |
MorphologySkeletonize3DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
AddNoise2DAlgorithm
Wrapper around
ImageProcessor |
class |
AddSaltAndPepperNoise2DAlgorithm
Wrapper around
ImageProcessor |
class |
DespeckleFilter2DAlgorithm
Wrapper around
RankFilters |
class |
RemoveOutliersFilter2DAlgorithm
Wrapper around
RankFilters |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateOMEWithMetadataAlgorithm |
class |
ExtractOMEROIAlgorithm |
class |
ExtractOMEXMLAlgorithm |
class |
OMEMetadataToTableAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
MSEBlockFlowAlgorithm
Adapted from
mpicbg.ij.plugin.MSEBlockFlow, as the methods there are all protected/private |
class |
MSEGaussianFlowAlgorithm
Adapted from
mpicbg.ij.plugin.MSEGaussianFlow, as the methods there are all protected/private |
class |
PMCCBlockFlowAlgorithm
Adapted from
mpicbg.ij.plugin.PMCCBlockFlow, as the methods there are all protected/private |
| Modifier and Type | Class and Description |
|---|---|
class |
ExtractOverlayAlgorithm |
class |
RemoveOverlayAlgorithm |
class |
RenderOverlayAlgorithm
Wrapper around
RoiDrawer |
class |
SetOverlayAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
SimpleImageRegistrationAlgorithm
Port of
Register_Virtual_Stack_MT |
| Modifier and Type | Class and Description |
|---|---|
class |
TurboRegRegistration2DReferencedAlgorithm
Port of
Register_Virtual_Stack_MT |
class |
TurboRegRegistration2DSingleAlgorithm
Port of
Register_Virtual_Stack_MT |
| Modifier and Type | Class and Description |
|---|---|
class |
CropToRoiAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
RoiPropertiesToAnnotationsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
AssembleExtractedROIAlgorithm |
class |
ExtractFromROIAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ExtractImageInRoiAlgorithm |
class |
GetRoiImageAlgorithm
Wrapper around
RoiManager |
class |
ROIToLabelsByNameAlgorithm |
class |
ROIToLabelsExpressionAlgorithm |
class |
RoiToMaskAlgorithm
Wrapper around
RoiManager |
class |
RoiToRGBAlgorithm
Wrapper around
RoiDrawer |
class |
UnreferencedRoiToMaskAlgorithm
Wrapper around
RoiManager |
class |
UnreferencedRoiToRGBAlgorithm
Wrapper around
RoiManager |
| Modifier and Type | Class and Description |
|---|---|
class |
DrawLineOvalRectangleRoiAlgorithm |
class |
DrawOvalRoiAlgorithm
Deprecated.
|
class |
DrawRectangleRoiAlgorithm
Deprecated.
|
class |
DrawScaleBarRoiAlgorithm |
class |
DrawTextRoiAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
FilterRoiByNameAlgorithm
Wrapper around
RoiManager |
class |
FilterROIByOverlapAlgorithm |
class |
FilterRoiByStatisticsAlgorithm
Wrapper around
RoiManager |
class |
FilterRoiByStatisticsScriptAlgorithm
Wrapper around
RoiManager |
class |
FilterROIListsAlgorithm |
class |
RemoveBorderRoisAlgorithm
Wrapper around
RoiManager |
class |
SliceROIListAlgorithm
Wrapper around
RoiManager |
| Modifier and Type | Class and Description |
|---|---|
class |
AppendRectangularRoiAlgorithm
Deprecated.
|
class |
DefineRectangularRoiAlgorithm
Deprecated.
|
class |
GenerateMissingRoiListsAlgorithm |
class |
MaskToRoiAlgorithm |
class |
ReferencedAppendRectangularRoiAlgorithm
Deprecated.
|
class |
ReferencedDefineRectangularRoiAlgorithm
Deprecated.
|
class |
TableToCircularROIAlgorithm
Wrapper around
RoiManager |
class |
TableToLineROIAlgorithm
Wrapper around
RoiManager |
class |
TableToPointROIAlgorithm
Wrapper around
RoiManager |
class |
TableToRectangularROIAlgorithm
Wrapper around
RoiManager |
class |
TableToTextROIAlgorithm
Wrapper around
RoiManager |
| Modifier and Type | Class and Description |
|---|---|
class |
CountROIAlgorithm |
class |
ExtractRoi2DRelationStatisticsAlgorithm |
class |
ExtractROIProfileAlgorithm |
class |
RoiStatisticsAlgorithm
Wrapper around
RoiManager |
| Modifier and Type | Class and Description |
|---|---|
class |
FilterAndMergeRoiByStatisticsScriptAlgorithm
Wrapper around
RoiManager |
class |
MergeRoiListsOrderedAlgorithm
Wrapper around
RoiManager |
class |
MergeRoiListsPairwiseOrAlgorithm
Wrapper around
RoiManager |
class |
MergeRoiListsUnorderedAlgorithm
Wrapper around
RoiManager |
| Modifier and Type | Class and Description |
|---|---|
class |
ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm |
class |
ChangeRoiPropertiesAlgorithm
Wrapper around
RoiManager |
class |
ChangeRoiPropertiesFromAnnotationsAlgorithm
Wrapper around
RoiManager |
class |
ChangeRoiPropertiesFromExpressionsAlgorithm
Wrapper around
RoiManager |
class |
ChangeRoiPropertiesFromTableAlgorithm
Wrapper around
RoiManager |
class |
ColorRoiByNameAlgorithm |
class |
ColorRoiByStatisticsAlgorithm
Wrapper around
RoiManager |
class |
CropRoiListAlgorithm
Wrapper around
RoiManager |
class |
EnlargeShrinkRoiAlgorithm
Wrapper around
RoiManager |
class |
FlattenRoiAlgorithm
Wrapper around
RoiManager |
class |
OutlineRoiAlgorithm
Wrapper around
RoiManager |
class |
OutlineRoiConcaveHullMoreiraSantosAlgorithm |
class |
ReorderRoiDimensionsAlgorithm
Algorithm that reorders Hyperstack dimensions
|
class |
RoiCalculatorAlgorithm
Wrapper around
RoiManager |
class |
RoiFloodFillAlgorithm
Wrapper around
RoiManager |
class |
RoiToCentroidAlgorithm
Wrapper around
RoiManager |
class |
RotateRoiAlgorithm
Wrapper around
RoiManager |
class |
ScaleRoiAlgorithm
Wrapper around
RoiManager |
class |
SetRoiImageAlgorithm
Wrapper around
RoiManager |
class |
UnsetRoiImageAlgorithm
Wrapper around
RoiManager |
| Modifier and Type | Class and Description |
|---|---|
class |
ExtractROIMetadataAlgorithm |
class |
RemoveROIMetadataAlgorithm |
class |
SetRoiMetadataByStatisticsAlgorithm
Wrapper around
RoiManager |
class |
SetROIMetadataFromTableAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
RegisterRoiToImageByBrightnessAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
SortAndExtractRoiByStatisticsAlgorithm
Deprecated.
|
class |
SortAndExtractRoiByStatisticsAlgorithm2
Wrapper around
RoiManager |
class |
SortRoiListByExpressionsAndMeasurementsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ExplodeRoiAlgorithm
Wrapper around
RoiManager |
class |
SplitRoiAlgorithm
Wrapper around
RoiManager |
class |
SplitRoiConnectedComponentsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ClassicWatershedSegmentationAlgorithm |
class |
RidgeDetector2DAlgorithm |
class |
SeededWatershedSegmentationAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
LaplacianSharpen2DAlgorithm
Wrapper around
ImageProcessor |
| Modifier and Type | Class and Description |
|---|---|
class |
AverageKeyValueThresholdStatisticsGenerator |
class |
FastKeyValueThresholdStatisticsGenerator |
class |
HistogramGenerator
Algorithm that generates
ResultsTableData as histogram |
class |
KeyValueAveragesGenerator |
class |
KeyValueHistogramGenerator |
class |
KeyValueThresholdPartitionAveragesGenerator |
class |
KeyValueThresholdPartitionGenerator |
class |
KeyValueThresholdStatisticsGenerator |
| Modifier and Type | Class and Description |
|---|---|
class |
AutoThreshold2DAlgorithm
Thresholding node that thresholds via an auto threshold
|
class |
BrightSpotsSegmentation2DAlgorithm
Applies Bright spots segmentation
|
class |
CustomAutoThreshold2D16UAlgorithm
Thresholding node that thresholds via an auto threshold
|
class |
CustomAutoThreshold2D16Uv2Algorithm
Thresholding node that thresholds via an auto threshold
|
class |
CustomAutoThreshold2D32FAlgorithm
Thresholding node that thresholds via an auto threshold
|
class |
CustomAutoThreshold2D32Fv2Algorithm
Thresholding node that thresholds via an auto threshold
|
class |
CustomAutoThreshold2D8UAlgorithm
Thresholding node that thresholds via an auto threshold
|
class |
CustomAutoThreshold2D8Uv2Algorithm
Thresholding node that thresholds via an auto threshold
|
class |
HessianSegmentation2DAlgorithm
Segments using a Hessian
|
class |
InternalGradientSegmentation2DAlgorithm
Internal gradient segmenter
|
class |
ManualThreshold16U2DAlgorithm
Wrapper around
ImageProcessor |
class |
ManualThreshold32F2DAlgorithm
Wrapper around
ImageProcessor |
class |
ManualThreshold8U2DAlgorithm
Wrapper around
ImageProcessor |
class |
PercentileThreshold8U2DAlgorithm
Wrapper around
ImageProcessor |
class |
ThresholdByAnnotation2DAlgorithm
Wrapper around
ImageProcessor |
| Modifier and Type | Class and Description |
|---|---|
class |
ColorThresholdExpression2D |
class |
ManualHSBThreshold2DAlgorithm |
class |
ManualLABThreshold2DAlgorithm |
class |
ManualRGBThreshold2DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
IterativeThresholdByROIStatistics2DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
BernsenLocalAutoThreshold2DAlgorithm
Segmenter node that thresholds via an auto threshold
Based on code from
fiji.threshold.Auto_Local_Threshold |
class |
ContrastLocalAutoThreshold2DAlgorithm
Segmenter node that thresholds via an auto threshold
Based on code from
fiji.threshold.Auto_Local_Threshold |
class |
LocalAutoThreshold2DAlgorithm
Segmenter node that thresholds via an auto threshold
Based on code from
fiji.threshold.Auto_Local_Threshold |
class |
NiblackLocalAutoThreshold2DAlgorithm
Segmenter node that thresholds via an auto threshold
Based on code from
fiji.threshold.Auto_Local_Threshold |
class |
PhansalkarLocalAutoThreshold2DAlgorithm
Segmenter node that thresholds via an auto threshold
Based on code from
fiji.threshold.Auto_Local_Threshold |
class |
SauvolaLocalAutoThreshold2DAlgorithm
Segmenter node that thresholds via an auto threshold
Based on code from
fiji.threshold.Auto_Local_Threshold |
| Modifier and Type | Class and Description |
|---|---|
class |
AddBorder2DAlgorithm |
class |
LineMirror2DFromExpressionsAlgorithm |
class |
LineMirror2DFromRoiAlgorithm |
class |
MergeImagesAlgorithm |
class |
TileImage2DAlgorithm
Deprecated.
|
class |
TileImage2Dv2Algorithm |
class |
TransformCrop2DAlgorithm
Wrapper around
ImageProcessor |
class |
TransformEqualCanvasSize2DAlgorithm |
class |
TransformEqualizeDimensionsAlgorithm |
class |
TransformEqualizeDimensionsToMaxAlgorithm |
class |
TransformExpandCanvas2DAlgorithm |
class |
TransformFlip2DAlgorithm
Wrapper around
ImageProcessor |
class |
TransformRotate2DAlgorithm
Wrapper around
ImageProcessor |
class |
TransformRotateFree2DAlgorithm
Wrapper around
ImageProcessor |
class |
TransformScale2DAlgorithm
Wrapper around
ImageProcessor |
class |
TransformScale3DAlgorithm
Wrapper around
ImageProcessor |
class |
TransformSetHyperstackDimensionsAlgorithm |
class |
UnTileImage2DAlgorithm |
class |
Warp2DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
SimpleImageAndRoiIteratingAlgorithm
Image processor algorithm that optionally takes a ROI
|
| Modifier and Type | Class and Description |
|---|---|
class |
ApplyDisplayContrastAlgorithm |
class |
DisplayRangeCalibrationAlgorithm |
class |
ExtractRoi2DFromOMEImageAlgorithm
Loads ROI data from a file via IJ.openFile()
|
class |
SetBioFormatsExporterSettings |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateDataWithImagePropertiesAlgorithm
Adds data annotations that contain the image properties
|
class |
BioFormatsAnnotatorAlgorithm
BioFormats importer wrapper
|
class |
ImagePropertiesToAnnotationAlgorithm
Adds data annotations that contain the image properties
|
| Modifier and Type | Class and Description |
|---|---|
class |
ColorSpaceConverterAlgorithm |
class |
ToHSBColorSpaceConverterAlgorithm |
class |
ToLABColorSpaceConverterAlgorithm |
class |
ToRGBColorSpaceConverterAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
BioFormatsExporter2Algorithm |
class |
BioFormatsExporterAlgorithm
Deprecated.
|
class |
BioFormatsImporterAlgorithm
BioFormats importer wrapper
|
class |
ExportImagePlusAsOMEZARRAlgorithm |
class |
ImportImageJSampleAlgorithm |
class |
ImportImagePlusAlgorithm
Loads an image data from a file via IJ.openFile()
|
class |
ImportLUTAsRGBFromFileAlgorithm |
class |
ImportOMEZARRFromURIAsImagePlusAlgorithm |
class |
ImportOMEZARRFromZipDirectoryAsImagePlusAlgorithm |
class |
ImportResultsTableAlgorithm
Imports
ResultsTableData from a file |
class |
ImportRoi2DAlgorithm
Loads ROI data from a file via IJ.openFile()
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImageTypeConverter
Converts ImageJ data type into each other
|
| Modifier and Type | Class and Description |
|---|---|
class |
ConvertImpImageToImagePlusAlgorithm |
class |
ExportImpImageAlgorithm |
class |
ImportImpImageAlgorithm |
class |
SetImpAlphaChannelAlgorithm |
class |
SplitImpAlphaChannelAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotationsToParametersAlgorithm |
class |
ConvertParametersToTableAlgorithm |
class |
DefineParametersAlgorithm
Generates
ParametersData objects |
class |
DefineParametersFromGlobalParametersAlgorithm
Generates
ParametersData objects |
class |
DefineParametersFromTableAlgorithm |
class |
DefineParametersTableAlgorithm
Generates
ParametersData objects |
class |
ExtractParametersAlgorithm |
class |
GenerateParametersFromExpressionAlgorithm |
class |
MergeParametersAlgorithm |
class |
MultiplyParametersAlgorithm |
class |
ParametersToAnnotationsAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
JIPipeGraphNode |
GeneratedParameters.getParent() |
| Modifier and Type | Method and Description |
|---|---|
void |
GeneratedParameters.setParent(JIPipeGraphNode parent) |
| Constructor and Description |
|---|
GeneratedParameters(JIPipeGraphNode parent) |
| Constructor and Description |
|---|
NodeTemplateBox(JIPipeDesktopWorkbench workbench,
boolean isDocked,
JIPipeDesktopGraphCanvasUI canvasUI,
Set<JIPipeGraphNode> nodesToAdd) |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateOMERODatasetReferenceAlgorithm |
class |
AnnotateOMEROImageReferenceAlgorithm |
class |
AnnotateOMEROPlateReferenceAlgorithm |
class |
AnnotateOMEROProjectReferenceAlgorithm |
class |
AnnotateOMEROScreenReferenceAlgorithm |
class |
AnnotateOMEROWellReferenceAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
OMERODatasetReferenceDataSource |
class |
OMEROGroupReferenceDataSource |
class |
OMEROImageReferenceDataSource |
class |
OMEROPlateReferenceDataSource |
class |
OMEROProjectReferenceDataSource |
class |
OMEROScreenReferenceDataSource |
class |
OMEROWellReferenceDataSource |
| Modifier and Type | Class and Description |
|---|---|
class |
DownloadOMEROImageAlgorithm |
class |
DownloadOMEROTableAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
OMEROCreateDatasetAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
OMEROListDatasetImagesAlgorithm |
class |
OMEROListDatasetsAlgorithm |
class |
OMEROListGroupsAlgorithm |
class |
OMEROListPlatesAlgorithm |
class |
OMEROListProjectsAlgorithm |
class |
OMEROListScreensAlgorithm |
class |
OMEROListWellImagesAlgorithm |
class |
OMEROListWellsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
UploadOMEROImageToDatasetAlgorithm |
class |
UploadOMEROTableAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ImportPretrainedOmnipose0ModelAlgorithm |
class |
Omnipose0InferenceAlgorithm |
class |
Omnipose0TrainingAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
LegacyOmnipose0InferenceAlgorithm
Deprecated.
|
class |
LegacyOmnipose0TrainingAlgorithm
Deprecated.
|
| Modifier and Type | Class and Description |
|---|---|
class |
ConvertDepthAlgorithm |
class |
ConvertTypeAlgorithm |
class |
InpaintingAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
BilateralFilterAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
GaborKernelGenerator |
class |
GaussianKernelGenerator |
| Modifier and Type | Method and Description |
|---|---|
JIPipeGraphNode |
SlotMapParameterCollection.getNode() |
| Constructor and Description |
|---|
SlotMapParameterCollection(Class<?> dataClass,
JIPipeGraphNode node,
Function<JIPipeDataSlotInfo,Object> newInstanceGenerator,
boolean initialize)
Creates a new instance
|
| Modifier and Type | Method and Description |
|---|---|
JIPipeGraphNode |
GraphNodeReferenceParameter.resolve(JIPipeProject project) |
| Modifier and Type | Class and Description |
|---|---|
class |
PlotTables2Algorithm
Algorithm that creates
JFreeChartPlotData from ResultsTableData
This is an improved version of PlotTables2Algorithm that is linked directly to a specific plot |
class |
PlotTablesAlgorithm
Deprecated.
Instead, the new dynamically generated plotting should be utilized
|
| Modifier and Type | Method and Description |
|---|---|
JIPipeGraphNode |
PlotTables2AlgorithmInfo.duplicate(JIPipeGraphNode algorithm) |
JIPipeGraphNode |
PlotTables2AlgorithmInfo.newInstance() |
| Modifier and Type | Method and Description |
|---|---|
Class<? extends JIPipeGraphNode> |
PlotTables2AlgorithmInfo.getInstanceClass() |
| Modifier and Type | Method and Description |
|---|---|
JIPipeGraphNode |
PlotTables2AlgorithmInfo.duplicate(JIPipeGraphNode algorithm) |
| Modifier and Type | Method and Description |
|---|---|
static Map<String,Path> |
PythonUtils.installInputSlots(StringBuilder code,
JIPipeMultiIterationStep iterationStep,
JIPipeGraphNode node,
List<JIPipeInputDataSlot> effectiveInputSlots,
Path workDirectory,
JIPipeProgressInfo progressInfo) |
static Map<String,Path> |
PythonUtils.installInputSlots(StringBuilder code,
JIPipeSingleIterationStep iterationStep,
JIPipeGraphNode node,
List<JIPipeInputDataSlot> effectiveInputSlots,
Path workDirectory,
JIPipeProgressInfo progressInfo) |
| Modifier and Type | Class and Description |
|---|---|
class |
IteratingJythonScriptAlgorithm
An algorithm that allows to run Python code
|
class |
JythonScriptAlgorithm
An algorithm that allows to run Python code
|
class |
MergingJythonScriptAlgorithm
An algorithm that allows to run Python code
|
class |
SimpleIteratingJythonScriptAlgorithm
An algorithm that allows to run Python code
|
| Modifier and Type | Class and Description |
|---|---|
class |
IteratingPythonScriptAlgorithm
An algorithm that allows to run Python code
|
class |
MergingPythonScriptAlgorithm
An algorithm that allows to run Python code
|
class |
PythonScriptAlgorithm
An algorithm that allows to run Python code
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImportRDatasetAlgorithm |
class |
IteratingRScriptAlgorithm |
class |
MergingRScriptAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
CreateLineMeshAlgorithm |
class |
CreateSphereMeshAlgorithm |
class |
ExportScene3DToColladaAlgorithm
Deprecated.
|
class |
ExportScene3DToColladaAlgorithm2 |
class |
GroupSceneAlgorithm |
class |
MaskTo3DMeshAlgorithm |
class |
MergeScenesAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ImportJsonAlgorithm |
class |
ImportStringAlgorithm |
class |
ImportXMLAlgorithm |
class |
StringDefinitionDataSource |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateWithJsonDataAlgorithm |
class |
ExtractJsonDataAsTableAlgorithm |
class |
ExtractTextFromJsonAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateWithTextDataAlgorithm |
class |
ProcessTextDataAlgorithm |
class |
TableToCSVTextAlgorithm |
class |
TextDataToTableAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateWithXPathDataAlgorithm |
class |
ExtractTextFromXMLAlgorithm |
class |
ExtractXPathDataAsTableAlgorithm |
class |
PrettifyXMLAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
DefineTablesAlgorithm
Algorithm that annotates all data with the same annotation
|
class |
GenerateColumnAlgorithm
Algorithm that adds or replaces a column by a generated value
|
class |
GenerateTableFromExpressionAlgorithm
Algorithm that adds or replaces a column by a generated value
|
class |
IntegrateColumnsAlgorithm
Algorithm that integrates columns
|
class |
ModifyAndMergeTablesScript
Algorithm that annotates all data with the same annotation
|
class |
ModifyTableColumnNamesAlgorithm |
class |
ModifyTablesScript
Algorithm that annotates all data with the same annotation
|
class |
TablesFromScript
Algorithm that annotates all data with the same annotation
|
| Modifier and Type | Class and Description |
|---|---|
class |
AddAnnotationColumnsAlgorithm
Algorithm that integrates columns
|
class |
AnnotateByTablePropertiesAlgorithm |
class |
AnnotateDataWithTableValues |
class |
ConvertAnnotationTableToAnnotatedTables
Algorithm that integrates columns
|
| Modifier and Type | Class and Description |
|---|---|
class |
ApplyExpressionToColumnsAlgorithm
Deprecated.
|
class |
ApplyExpressionToTableByColumnAlgorithm
Algorithm that integrates columns
|
class |
ColumnsToAnnotationsAlgorithm |
class |
ColumnToNumericAlgorithm
Algorithm that removes columns
|
class |
ColumnToStringAlgorithm
Algorithm that removes columns
|
class |
ConvertColumnsAlgorithm
Algorithm that integrates columns
|
class |
RemoveColumnAlgorithm
Algorithm that removes columns
|
class |
RenameSingleColumnsAlgorithm
Algorithm that removes columns
|
class |
RenameTableColumns2Algorithm
Algorithm that removes columns
|
class |
RenameTableColumnsAlgorithm
Deprecated.
|
class |
RenameTableColumnsToAnnotationAlgorithm
Algorithm that removes columns
|
class |
SortTableColumnsAlgorithm
Algorithm that integrates columns
|
| Modifier and Type | Class and Description |
|---|---|
class |
FilterTableRowsAlgorithm
Algorithm that integrates columns
|
class |
FilterTablesAlgorithm
Algorithm that integrates columns
|
class |
SliceTableRowsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
MergeColumnsAlgorithm
Algorithm that integrates columns
|
class |
MergeTableColumnsSimpleAlgorithm
Algorithm that integrates columns
|
class |
MergeTableColumnsSupplementAlgorithm
Algorithm that integrates columns
|
class |
MergeTableColumnsSupplementMergingAlgorithm
Algorithm that integrates columns
|
class |
MergeTableRowsAlgorithm
Algorithm that integrates columns
|
| Modifier and Type | Class and Description |
|---|---|
class |
AddMissingRowsInSeriesAlgorithm |
class |
ApplyExpressionPerRowAlgorithm
Deprecated.
|
class |
ApplyExpressionPerRowAlgorithm2 |
class |
SortTableRowsAlgorithm
Algorithm that integrates columns
|
| Modifier and Type | Class and Description |
|---|---|
class |
SplitTableByColumnsAlgorithm
Algorithm that integrates columns
|
class |
SplitTableIntoColumnsAlgorithm
Algorithm that integrates columns
|
class |
SplitTableIntoRowsAlgorithm
Algorithm that integrates columns
|
| Modifier and Type | Class and Description |
|---|---|
class |
DBSCANClusteringAlgorithm |
class |
FuzzyKMeansClusteringAlgorithm |
class |
KMeansClusteringAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ApplyExpressionPerLabelAlgorithm |
class |
MeltTableAlgorithm
Algorithm that integrates columns
|
class |
TableToHistogram2Algorithm |
class |
TableToHistogramAlgorithm
Deprecated.
|
class |
UnMeltTableAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ConverterAlgorithm
Algorithm that converts any type to any other type
|
class |
DataSlicer |
class |
DuplicateDataAlgorithm |
class |
ImportJIPipeSlotFolderAlgorithm |
class |
IterationStepSlicer |
class |
RunExpressionAlgorithm |
class |
SelectDataTableRowsAlgorithm |
class |
SleepAlgorithm |
class |
SortRowsByAnnotationsAlgorithm |
class |
SortRowsByExpressionAlgorithm |
class |
ToDataStringAlgorithm |
class |
UsePlaceholderForMissingDataAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateWithDataTableProperties |
class |
ExtractTableAlgorithm |
class |
MergeDataToTableAlgorithm |
class |
PullDataTableAnnotations |
class |
PushDataTableAnnotations |
| Modifier and Type | Class and Description |
|---|---|
class |
DistributeDataRandomlyByCountAlgorithm |
class |
DistributeDataRandomlyByPercentageAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
CrasherAlgorithm |
class |
MultiIterationStepCheckerAlgorithm |
class |
SingleIterationStepCheckerAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
GetJIPipeSlotFolderAlgorithm |
class |
JIPipeProjectParameterDefinition |
class |
PathsToJIPipeProjectParametersAlgorithm |
class |
RunJIPipeProjectAlgorithm
Runs a JIPipe project
|
| Modifier and Type | Class and Description |
|---|---|
class |
RunProcessIteratingAlgorithm |
class |
RunProcessMergingAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
static MarkdownText |
TooltipUtils.getAlgorithmDocumentation(JIPipeGraphNode node) |
static String |
TooltipUtils.getAlgorithmTooltip(JIPipeGraphNode node,
boolean withTitle)
Creates a tooltip for an algorithm
|
| Modifier and Type | Method and Description |
|---|---|
static List<JIPipeAlgorithm> |
JIPipeUtils.filterAlgorithmsList(Collection<? extends JIPipeGraphNode> collection) |
Copyright © 2020–2025 Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute (HKI). All rights reserved.