Uses of Class
org.hkijena.jipipe.api.nodes.AddJIPipeOutputSlot

Packages that use AddJIPipeOutputSlot

Package	Description
org.hkijena.jipipe.api.compartments.algorithms
org.hkijena.jipipe.api.data
org.hkijena.jipipe.api.grouping
org.hkijena.jipipe.api.looping
org.hkijena.jipipe.api.nodes
org.hkijena.jipipe.api.nodes.infos
org.hkijena.jipipe.plugins.annotation.algorithms
org.hkijena.jipipe.plugins.annotation.datasources
org.hkijena.jipipe.plugins.cellpose.algorithms
org.hkijena.jipipe.plugins.cellpose.algorithms.cp2
org.hkijena.jipipe.plugins.cellpose.algorithms.cp3
org.hkijena.jipipe.plugins.cellpose.legacy.algorithms
org.hkijena.jipipe.plugins.clij2
org.hkijena.jipipe.plugins.clij2.algorithms
org.hkijena.jipipe.plugins.core.nodes
org.hkijena.jipipe.plugins.filesystem.algorithms.local
org.hkijena.jipipe.plugins.filesystem.algorithms.zarr
org.hkijena.jipipe.plugins.filesystem.datasources
org.hkijena.jipipe.plugins.forms.algorithms.generators
org.hkijena.jipipe.plugins.ij3d.nodes
org.hkijena.jipipe.plugins.ij3d.nodes.binary
org.hkijena.jipipe.plugins.ij3d.nodes.features
org.hkijena.jipipe.plugins.ij3d.nodes.filters
org.hkijena.jipipe.plugins.ij3d.nodes.overlay
org.hkijena.jipipe.plugins.ij3d.nodes.roi3d
org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.convert
org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.filter
org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.generate
org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.measure
org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.merge
org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.metadata
org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.modify
org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.process
org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.split
org.hkijena.jipipe.plugins.ij3d.nodes.segmentation
org.hkijena.jipipe.plugins.ijfilaments.nodes.convert
org.hkijena.jipipe.plugins.ijfilaments.nodes.filter
org.hkijena.jipipe.plugins.ijfilaments.nodes.generate
org.hkijena.jipipe.plugins.ijfilaments.nodes.measure
org.hkijena.jipipe.plugins.ijfilaments.nodes.merge
org.hkijena.jipipe.plugins.ijfilaments.nodes.modify
org.hkijena.jipipe.plugins.ijfilaments.nodes.overlay
org.hkijena.jipipe.plugins.ijfilaments.nodes.process
org.hkijena.jipipe.plugins.ijfilaments.nodes.split
org.hkijena.jipipe.plugins.ijocr.nodes
org.hkijena.jipipe.plugins.ijtrackmate.nodes.converters
org.hkijena.jipipe.plugins.ijtrackmate.nodes.detectors
org.hkijena.jipipe.plugins.ijtrackmate.nodes.spots
org.hkijena.jipipe.plugins.ijtrackmate.nodes.tracks
org.hkijena.jipipe.plugins.ijweka.nodes
org.hkijena.jipipe.plugins.ilastik.nodes
org.hkijena.jipipe.plugins.imagej2
org.hkijena.jipipe.plugins.imagej2.algorithms
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.analyze
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.background
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.binary
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.blur
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.calibration
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.color
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.contrast
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.convert
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.convolve
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.datasources
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.dimensions
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.edge
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.features
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.fft
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.forms
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.generate
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.io
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.labels
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.labels.filter
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.lut
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.masking
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.math
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.math.distancemap
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.math.local
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.metadata
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.misc
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.montage
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.morphology
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.noise
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.ome
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.opticalflow
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.overlay
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.annotations
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.assemble
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.convert
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.draw
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.filter
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.generate
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.measure
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.merge
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.modify
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.properties
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.register
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.sort
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.split
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.segment
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.sharpen
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.statistics
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.threshold
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.threshold.color
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.threshold.local
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.transform
org.hkijena.jipipe.plugins.imagejdatatypes.algorithms
org.hkijena.jipipe.plugins.imagejdatatypes.algorithms.annotate
org.hkijena.jipipe.plugins.imagejdatatypes.algorithms.color
org.hkijena.jipipe.plugins.imagejdatatypes.algorithms.io
org.hkijena.jipipe.plugins.imagejdatatypes.converters
org.hkijena.jipipe.plugins.imp.nodes
org.hkijena.jipipe.plugins.multiparameters.nodes
org.hkijena.jipipe.plugins.omero.nodes.annotate
org.hkijena.jipipe.plugins.omero.nodes.datasources
org.hkijena.jipipe.plugins.omero.nodes.download
org.hkijena.jipipe.plugins.omero.nodes.manage
org.hkijena.jipipe.plugins.omero.nodes.navigate
org.hkijena.jipipe.plugins.omero.nodes.upload
org.hkijena.jipipe.plugins.omnipose.algorithms
org.hkijena.jipipe.plugins.omnipose.legacy.algorithms
org.hkijena.jipipe.plugins.opencv.nodes
org.hkijena.jipipe.plugins.opencv.nodes.filters
org.hkijena.jipipe.plugins.opencv.nodes.generators
org.hkijena.jipipe.plugins.plots.nodes
org.hkijena.jipipe.plugins.r.algorithms
org.hkijena.jipipe.plugins.scene3d.nodes
org.hkijena.jipipe.plugins.strings.datasources
org.hkijena.jipipe.plugins.strings.nodes.json
org.hkijena.jipipe.plugins.strings.nodes.text
org.hkijena.jipipe.plugins.strings.nodes.xml
org.hkijena.jipipe.plugins.tables.nodes
org.hkijena.jipipe.plugins.tables.nodes.annotations
org.hkijena.jipipe.plugins.tables.nodes.columns
org.hkijena.jipipe.plugins.tables.nodes.filter
org.hkijena.jipipe.plugins.tables.nodes.merge
org.hkijena.jipipe.plugins.tables.nodes.rows
org.hkijena.jipipe.plugins.tables.nodes.split
org.hkijena.jipipe.plugins.tables.nodes.transform
org.hkijena.jipipe.plugins.utils.algorithms
org.hkijena.jipipe.plugins.utils.algorithms.datatable
org.hkijena.jipipe.plugins.utils.algorithms.distribute
org.hkijena.jipipe.plugins.utils.algorithms.meta

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.api.compartments.algorithms

Classes in org.hkijena.jipipe.api.compartments.algorithms with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	JIPipeProjectCompartment A project compartment.

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.api.data

Methods in org.hkijena.jipipe.api.data that return AddJIPipeOutputSlot

Modifier and Type	Method and Description
AddJIPipeOutputSlot	JIPipeDataSlotInfo.toOutputSlotAnnotation() Converts this info into the annotation form.

Methods in org.hkijena.jipipe.api.data with parameters of type AddJIPipeOutputSlot

Modifier and Type	Method and Description
JIPipeDefaultMutableSlotConfiguration.Builder	JIPipeDefaultMutableSlotConfiguration.Builder.addOutputSlot(AddJIPipeOutputSlot annotation) Adds an output slot from an annotation
JIPipeDataSlotInfo	JIPipeDefaultMutableSlotConfiguration.addSlot(AddJIPipeOutputSlot slot, boolean user) Adds an input slot from an annotation

Constructors in org.hkijena.jipipe.api.data with parameters of type AddJIPipeOutputSlot

Constructor and Description
JIPipeDataSlotInfo(AddJIPipeOutputSlot slot)

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.api.grouping

Methods in org.hkijena.jipipe.api.grouping that return types with arguments of type AddJIPipeOutputSlot

Modifier and Type	Method and Description
List<AddJIPipeOutputSlot>	JsonNodeInfo.getOutputSlots()

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.api.looping

Classes in org.hkijena.jipipe.api.looping with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	LoopEndNode Deprecated.
class	LoopStartNode Deprecated.

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.api.nodes

Methods in org.hkijena.jipipe.api.nodes that return types with arguments of type AddJIPipeOutputSlot

Modifier and Type	Method and Description
List<AddJIPipeOutputSlot>	JIPipeNodeInfo.getOutputSlots() Returns general output data.

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.api.nodes.infos

Methods in org.hkijena.jipipe.api.nodes.infos that return types with arguments of type AddJIPipeOutputSlot

Modifier and Type	Method and Description
List<AddJIPipeOutputSlot>	JIPipeMutableNodeInfo.getOutputSlots()
List<AddJIPipeOutputSlot>	JIPipeEmptyNodeInfo.getOutputSlots()

Method parameters in org.hkijena.jipipe.api.nodes.infos with type arguments of type AddJIPipeOutputSlot

Modifier and Type	Method and Description
void	JIPipeMutableNodeInfo.setOutputSlots(List<AddJIPipeOutputSlot> outputSlots) Sets the output slots

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.annotation.algorithms

Classes in org.hkijena.jipipe.plugins.annotation.algorithms with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	AnnotateByExpression Algorithm that annotates all data with the same annotation
class	AnnotateByProjectPaths
class	AnnotateWithAnnotationTable Algorithm that merges the annotations of all inputs and outputs the data with the shared annotations
class	AnnotateWithData
class	AnnotateWithDataString Generates annotations from filenames
class	AnnotateWithSourceSlot Generates annotations from filenames
class	ConvertToAnnotationTable Removes a specified annotation
class	DataAnnotationToStringAnnotation
class	ExtractAndReplaceAnnotation Generates annotations from filenames
class	ExtractDataAnnotation
class	FilterByAnnotation Algorithm that splits the input data by a specified annotation
class	GenerateRandomUniqueAnnotation Generates annotations from filenames
class	GenerateUniqueAnnotation Generates annotations from filenames
class	MergeDataSlots Merges the input slot tables into one data slot
class	ModifyAnnotationScript Algorithm that annotates all data with the same annotation
class	OverwriteAnnotations
class	RemoveAnnotationAlgorithm Removes a specified annotation
class	RemoveArrayAnnotationsAlgorithm
class	RemoveDataAnnotations
class	RemoveNAAnnotationColumnsAlgorithm
class	RenameAnnotation Generates annotations from filenames
class	RenameDataAnnotation Generates annotations from filenames
class	SetSingleAnnotation Algorithm that annotates all data with the same annotation
class	SimplifyAnnotationsAlgorithm
class	SplitByAnnotationScript Algorithm that annotates all data with the same annotation

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.annotation.datasources

Classes in org.hkijena.jipipe.plugins.annotation.datasources with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	AnnotationTableFromFile Imports AnnotationTableData from a file

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.cellpose.algorithms

Classes in org.hkijena.jipipe.plugins.cellpose.algorithms with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ImportCellposeModelFromFileAlgorithm
class	ImportCellposeSizeModelFromFileAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.cellpose.algorithms.cp2

Classes in org.hkijena.jipipe.plugins.cellpose.algorithms.cp2 with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ImportPretrainedCellpose2ModelAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.cellpose.algorithms.cp3

Classes in org.hkijena.jipipe.plugins.cellpose.algorithms.cp3 with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	Cellpose3DenoiseInferenceAlgorithm
class	ImportPretrainedCellpose3DenoiseModelAlgorithm
class	ImportPretrainedCellpose3SegmentationModelAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.cellpose.legacy.algorithms

Classes in org.hkijena.jipipe.plugins.cellpose.legacy.algorithms with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	Cellpose1TrainingAlgorithm Deprecated.
class	ImportLegacyCellposeModelAlgorithm Deprecated.
class	ImportLegacyCellposeSizeModelAlgorithm Deprecated.
class	LegacyCellpose2TrainingAlgorithm Deprecated.

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.clij2

Methods in org.hkijena.jipipe.plugins.clij2 that return types with arguments of type AddJIPipeOutputSlot

Modifier and Type	Method and Description
List<AddJIPipeOutputSlot>	CLIJCommandNodeInfo.getOutputSlots()

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.clij2.algorithms

Classes in org.hkijena.jipipe.plugins.clij2.algorithms with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	Clij2PullAlgorithm
class	Clij2PushAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.core.nodes

Classes in org.hkijena.jipipe.plugins.core.nodes with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	JIPipeCommentNode

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.filesystem.algorithms.local

Classes in org.hkijena.jipipe.plugins.filesystem.algorithms.local with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	AnnotateWithPathProperties
class	AnnotationTableToPaths Filters input files
class	AnnotationToPath Filters input files
class	ConcatenateByParameter Applies subfolder navigation to each input folder
class	ConcatenatePaths Applies subfolder navigation to each input folder
class	ConvertDataToOutputPath Applies subfolder navigation to each input folder
class	ConvertToExportedPath
class	CopyPath Applies subfolder navigation to each input folder
class	CreateDirectory Applies subfolder navigation to each input folder
class	ExportData
class	ExportDataByParameter
class	ExportDataByParameter2
class	ExportDataTable
class	ExportDataTableByParameter
class	ExtractFileName Applies subfolder navigation to each input folder
class	ExtractParent Applies subfolder navigation to each input folder
class	FilterPaths Filters input files
class	ImportDataRowFolder
class	ImportDataTableArchive
class	ImportDataTableDirectory
class	ListFiles Algorithm that lists files in each folder
class	ListSubfolders Algorithms that lists the sub folders for each input folder
class	ModifyPath
class	ModifyPathWithExpression
class	RelativizeByParameter Applies subfolder navigation to each input folder
class	RelativizePaths Applies subfolder navigation to each input folder
class	RenameByString Applies subfolder navigation to each input folder
class	SimpleFileAnnotationGenerator Generates annotations from filenames
class	SimpleFolderAnnotationGenerator Algorithm that generates annotations from folder names
class	SimplePathAnnotationGenerator Algorithm that generates annotations from folder names

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.filesystem.algorithms.zarr

Classes in org.hkijena.jipipe.plugins.filesystem.algorithms.zarr with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ListZARRDirectoryZIPDatasetsAlgorithm
class	ListZARRURIDatasetsAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.filesystem.datasources

Classes in org.hkijena.jipipe.plugins.filesystem.datasources with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	DownloadFilesDataSource
class	FileDataSource Provides an input file
class	FileListDataSource Provides an input file
class	FolderDataSource Provides an input folder
class	FolderListDataSource Provides an input folder
class	OutputFolderDataSource
class	PathDataSource Provides an input file
class	PathFromUserDataSource
class	PathListDataSource Provides an input folder
class	ProjectUserFolderDataSource
class	TemporaryFileDataSource
class	TemporaryFolderDataSource
class	URIListDataSource

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.forms.algorithms.generators

Classes in org.hkijena.jipipe.plugins.forms.algorithms.generators with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	BooleanFormGeneratorAlgorithm
class	DoubleFormGeneratorAlgorithm
class	EnumFormGeneratorAlgorithm
class	GroupHeaderFormGeneratorAlgorithm
class	IntegerFormGeneratorAlgorithm
class	PathFormGeneratorAlgorithm
class	StringFormGeneratorAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.ij3d.nodes

Classes in org.hkijena.jipipe.plugins.ij3d.nodes with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ImportROI3DAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.ij3d.nodes.binary

Classes in org.hkijena.jipipe.plugins.ij3d.nodes.binary with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	DistanceMap3DAlgorithm
class	ErodedVolumeFraction3DAlgorithm
class	Voronoi3DAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.ij3d.nodes.features

Classes in org.hkijena.jipipe.plugins.ij3d.nodes.features with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	FindMaxima3DAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.ij3d.nodes.filters

Classes in org.hkijena.jipipe.plugins.ij3d.nodes.filters with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	Fast3DFiltersAdaptiveAlgorithm
class	Fast3DFiltersCloseAlgorithm
class	Fast3DFiltersLocalMaxAlgorithm
class	Fast3DFiltersMaxAlgorithm
class	Fast3DFiltersMeanAlgorithm
class	Fast3DFiltersMedianAlgorithm
class	Fast3DFiltersMinAlgorithm
class	Fast3DFiltersOpenAlgorithm
class	Fast3DFiltersSobelAlgorithm
class	Fast3DFiltersTopHatAlgorithm
class	Fast3DFiltersVarianceAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.ij3d.nodes.overlay

Classes in org.hkijena.jipipe.plugins.ij3d.nodes.overlay with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ExtractOverlay3DAlgorithm
class	RemoveOverlay3DAlgorithm
class	RenderOverlay3DAlgorithm Wrapper around RoiDrawer
class	SetOverlay3DAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d

Classes in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ExportROI3DAlgorithm Deprecated.
class	ExportROI3DAlgorithm2

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.convert

Classes in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.convert with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	Roi2DToRoi3DConverterAlgorithm
class	Roi3DTo3DMeshAlgorithm
class	Roi3DToLabelsAlgorithm
class	Roi3DToMaskAlgorithm
class	Roi3DToRGBAlgorithm
class	Roi3DToRoi2DConverterAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.filter

Classes in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.filter with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	FilterRoi3DByStatisticsAlgorithm Wrapper around RoiManager
class	FilterRoi3DListsAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.generate

Classes in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.generate with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	FindParticles3DAlgorithm
class	Roi3DFromLabelsAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.measure

Classes in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.measure with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ExtractRoi3DRelationStatisticsAlgorithm
class	ExtractRoi3DStatisticsAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.merge

Classes in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.merge with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	MergeROI3DAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.metadata

Classes in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.metadata with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ExtractROI3DMetadataAlgorithm
class	RemoveROI3DMetadataAlgorithm
class	SetROI3DMetadataFromTableAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.modify

Classes in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.modify with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ChangeRoi3DPropertiesAlgorithm
class	ChangeRoi3DPropertiesFromExpressionsAlgorithm
class	ChangeRoi3DPropertiesFromTableAlgorithm
class	ColorRoi3DByNameAlgorithm
class	ColorRoi3DByStatisticsAlgorithm Wrapper around RoiManager
class	ROI3DCalculatorAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.process

Classes in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.process with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	OutlineRoi3DAlgorithm Wrapper around RoiManager
class	RemoveBorderRoi3DAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.split

Classes in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.split with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ExplodeRoi3DListAlgorithm
class	SplitRoi3DIntoConnectedComponentsAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.ij3d.nodes.segmentation

Classes in org.hkijena.jipipe.plugins.ij3d.nodes.segmentation with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ConstantSpotSegmentation3DAlgorithm
class	DifferenceSpotSegmentation3DAlgorithm
class	GaussianFitSpotSegmentation3DAlgorithm
class	HysteresisSegmentation3DAlgorithm
class	IterativeThreshold3DAlgorithm
class	LocalMeanSpotSegmentation3DAlgorithm
class	NucleiSegmentation3DAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.ijfilaments.nodes.convert

Classes in org.hkijena.jipipe.plugins.ijfilaments.nodes.convert with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ConvertFilamentCyclesToROIAlgorithm
class	ConvertFilamentsTo3DMeshAlgorithm
class	ConvertFilamentsToLabels2Algorithm
class	ConvertFilamentsToLabelsAlgorithm
class	ConvertFilamentsToMaskAlgorithm
class	ConvertFilamentsToRGBAlgorithm
class	ConvertFilamentsToRoi3DAlgorithm
class	ConvertFilamentsToRoiAlgorithm
class	ConvertROIToFilamentsAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.ijfilaments.nodes.filter

Classes in org.hkijena.jipipe.plugins.ijfilaments.nodes.filter with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	FilterFilamentEdgesByProperties
class	FilterFilamentsByProperties
class	FilterFilamentVerticesByProperties
class	RemoveBorderFilaments

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.ijfilaments.nodes.generate

Classes in org.hkijena.jipipe.plugins.ijfilaments.nodes.generate with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ImportFilamentsFromJsonAlgorithm
class	SkeletonToFilaments2DAlgorithm
class	SkeletonToFilaments3DAlgorithm
class	SkeletonToSimplifiedFilamentsFijiAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.ijfilaments.nodes.measure

Classes in org.hkijena.jipipe.plugins.ijfilaments.nodes.measure with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	MeasureEdgesAlgorithm
class	MeasureFilamentsAlgorithm
class	MeasureVerticesAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.ijfilaments.nodes.merge

Classes in org.hkijena.jipipe.plugins.ijfilaments.nodes.merge with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	MergeFilamentsAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.ijfilaments.nodes.modify

Classes in org.hkijena.jipipe.plugins.ijfilaments.nodes.modify with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ChangeFilamentEdgePropertiesExpressionAlgorithm
class	ChangeFilamentEdgePropertiesManuallyAlgorithm
class	ChangeFilamentVertexPropertiesExpressionAlgorithm
class	ChangeFilamentVertexPropertiesManuallyAlgorithm
class	ConnectVerticesAlgorithm
class	ConnectVerticesFastAlgorithm
class	ErodeEndVerticesAlgorithm
class	FilamentCyclesToComponentsAlgorithm
class	FindLinearFilamentVertexOrderAlgorithm
class	FlattenFilamentsAlgorithm
class	GrowEndVerticesAlgorithm
class	RemoveVertexValueBackupsAlgorithm
class	RestoreVertexValueBackupAlgorithm
class	SetFilamentMetadataToComponentIndexAlgorithm
class	SetVertexMetadataFromImageAlgorithm
class	SetVertexPhysicalSizeFromImageAlgorithm
class	SetVertexRadiusFromImageAlgorithm
class	SetVertexValueFromImageAlgorithm
class	SubdivideFilamentEdges

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.ijfilaments.nodes.overlay

Classes in org.hkijena.jipipe.plugins.ijfilaments.nodes.overlay with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	SetOverlayFilamentsAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.ijfilaments.nodes.process

Classes in org.hkijena.jipipe.plugins.ijfilaments.nodes.process with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	CopyFilamentsAcrossZCTAlgorithm
class	FixOverlapsNonBranchingAlgorithm
class	RemoveDuplicateVerticesAlgorithm
class	SimplifyFilamentsAlgorithm
class	SmoothFilamentsAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.ijfilaments.nodes.split

Classes in org.hkijena.jipipe.plugins.ijfilaments.nodes.split with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	SplitFilamentsIntoConnectedComponentsAlgorithm
class	SplitFilamentsIntoCyclesAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.ijocr.nodes

Classes in org.hkijena.jipipe.plugins.ijocr.nodes with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	TesseractOCRAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.ijtrackmate.nodes.converters

Classes in org.hkijena.jipipe.plugins.ijtrackmate.nodes.converters with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ConvertSpotsToRoiNode
class	ConvertTracksToRoiNode

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.ijtrackmate.nodes.detectors

Methods in org.hkijena.jipipe.plugins.ijtrackmate.nodes.detectors that return types with arguments of type AddJIPipeOutputSlot

Modifier and Type	Method and Description
List<AddJIPipeOutputSlot>	CreateSpotDetectorNodeInfo.getOutputSlots()
List<AddJIPipeOutputSlot>	CreateSpotTrackerNodeInfo.getOutputSlots()

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.ijtrackmate.nodes.spots

Classes in org.hkijena.jipipe.plugins.ijtrackmate.nodes.spots with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	MeasureSpotsNode
class	MergeSpotsNode
class	SplitSpotsNode
class	SpotDetectorNode
class	SpotFilterNode
class	SpotsToRGBNode

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.ijtrackmate.nodes.tracks

Classes in org.hkijena.jipipe.plugins.ijtrackmate.nodes.tracks with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	FollowSpotsPerTrackNode
class	MeasureBranchesNode
class	MeasureEdgesNode
class	MeasureTracksNode
class	MergeTracksNode
class	SplitTracksNode
class	TrackFilterNode
class	TrackingNode
class	TrackSchemeRendererNode
class	TracksToRGBNode

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.ijweka.nodes

Classes in org.hkijena.jipipe.plugins.ijweka.nodes with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ImportWekaModelFromFileAlgorithm
class	WekaClassification2DAlgorithm
class	WekaClassification3DAlgorithm
class	WekaTrainingLabels2DAlgorithm
class	WekaTrainingLabels2DAlgorithm2
class	WekaTrainingMask2DAlgorithm
class	WekaTrainingMask2DAlgorithm2
class	WekaTrainingROI2DAlgorithm
class	WekaTrainingROI3DAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.ilastik.nodes

Classes in org.hkijena.jipipe.plugins.ilastik.nodes with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ExportIlastikHDF5ImageAlgorithm
class	ImportIlastikHDF5ImageAlgorithm
class	ImportIlastikModel

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagej2

Methods in org.hkijena.jipipe.plugins.imagej2 that return types with arguments of type AddJIPipeOutputSlot

Modifier and Type	Method and Description
List<AddJIPipeOutputSlot>	ImageJ2OpNodeInfo.getOutputSlots()

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagej2.algorithms

Classes in org.hkijena.jipipe.plugins.imagej2.algorithms with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	CreateIJ2OutOfBoundsFactoryAlgorithm
class	CreateIJ2ShapeAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.analyze

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.analyze with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	AnnotateByImageStatisticsExpressionAlgorithm Wrapper around RoiManager
class	ImageStatisticsAlgorithm Wrapper around RoiManager
class	ImageStatisticsExpressionAlgorithm Wrapper around RoiManager

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.background

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.background with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	RollingBallBackgroundEstimator2DAlgorithm Wrapper around RankFilters

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.binary

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.binary with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	BinarizeAlgorithm
class	BitwiseLogicalOperationAlgorithm
class	ConditionalInverterAlgorithm
class	ConnectedComponentsLabeling2DAlgorithm
class	ConnectedComponentsLabeling3DAlgorithm
class	ConvexifyAlgorithm
class	DistanceTransformWatershed2DAlgorithm Wrapper around EDM
class	KeepLargestRegionAlgorithm
class	RemoveLargestRegionAlgorithm
class	UltimateErodedPoints2DAlgorithm Wrapper around EDM
class	VolumeOpening2DAlgorithm
class	VolumeOpening3DAlgorithm
class	Voronoi2DAlgorithm Wrapper around EDM

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.blur

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.blur with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	BoxFilter2DAlgorithm Wrapper around ImageProcessor
class	BoxFilter3DAlgorithm Wrapper around GaussianBlur
class	GaussianBlur2DAlgorithm Wrapper around GaussianBlur
class	GaussianBlur3DAlgorithm Wrapper around GaussianBlur
class	MedianBlurFilter2DAlgorithm Wrapper around RankFilters
class	MedianBlurFilter3DAlgorithm Wrapper around GaussianBlur
class	MedianBlurGreyscale8U2DAlgorithm Wrapper around ImageProcessor
class	MedianBlurRGB2DAlgorithm Wrapper around ImageProcessor

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.calibration

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.calibration with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	CopyPhysicalDimensionsBetweenImagesAlgorithm
class	DrawScaleBarAlgorithm
class	SetPhysicalDimensionsAlgorithm
class	SetPhysicalDimensionsByAnnotationsAlgorithm
class	SetPhysicalDimensionsByExpressionsAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.color

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.color with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ArrangeChannelsAlgorithm Wrapper around ChannelArranger
class	BlendImagesAlgorithm
class	ColorToGreyscaleExpression2D
class	CombineChannelsToRGBAlgorithm
class	InvertColorsAlgorithm Wrapper around ImageProcessor
class	MergeChannelsAlgorithm Wrapper around ImageProcessor
class	MergeHSBChannelsAlgorithm
class	MergeLABChannelsAlgorithm
class	MergeRGBChannelsAlgorithm
class	NewSplitChannelsAlgorithm Wrapper around ChannelSplitter
class	OverlayImagesAlgorithm Deprecated. Use BlendImagesAlgorithm instead
class	RenderImageToRGBAlgorithm
class	SplitChannelsAlgorithm Deprecated.
class	SplitChannelsByTableAlgorithm Wrapper around ChannelSplitter
class	SplitRGBChannelsAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.contrast

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.contrast with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	CLAHEContrastEnhancer Applies CLAHE image enhancing
class	HistogramContrastEnhancerAlgorithm This class is based on ContrastEnhancer This class is not very portable, so I adapted the code here
class	IlluminationCorrection2DAlgorithm Applies illumination correction
class	ImageJContrastEnhancerAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.convert

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.convert with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ConvertImageAlgorithm
class	ConvertImageTo16BitAlgorithm
class	ConvertImageTo16BitAutoContrastAlgorithm
class	ConvertImageTo32BitAlgorithm
class	ConvertImageTo8BitAlgorithm
class	ConvertImageTo8BitAutoContrastAlgorithm
class	ConvertImageToHSBAlgorithm
class	ConvertImageToLABAlgorithm
class	ConvertImageToRGBAlgorithm
class	ImageToMatrixAlgorithm Algorithm that generates ResultsTableData as histogram
class	ImageToTableAlgorithm Algorithm that generates ResultsTableData as histogram
class	ImageToTableColumnAlgorithm
class	MatrixToImageAlgorithm
class	MultipleImagesToTableAlgorithm Algorithm that generates ResultsTableData as histogram
class	TableColumnToImageAlgorithm
class	TableToImageAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.convolve

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.convolve with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ConvolveByImage2DAlgorithm Wrapper around Convolver
class	ConvolveByParameter2DAlgorithm Wrapper around Convolver

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.datasources

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.datasources with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ImageStackFromFolder Loads an image data from a file via IJ.openFile()
class	OMEImageFromImagePlus

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.dimensions

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.dimensions with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	CreateStackAlgorithm
class	ExpressionSlicerAlgorithm
class	HyperstackSlicerAlgorithm
class	Merge2DToHyperstackAlgorithm
class	NewZProjectorAlgorithm Wrapper around ZProjector
class	ReorderDimensionsAlgorithm Algorithm that reorders Hyperstack dimensions
class	ReorderHyperstackSlicesExpressionAlgorithm
class	ResliceAlgorithm
class	SplitByDimensionAlgorithm
class	StackCombinerAlgorithm
class	StackInverterAlgorithm Wrapper around ImageProcessor
class	StackSplitterAlgorithm Wrapper around ChannelArranger
class	StackTo2DAlgorithm Wrapper around ImageProcessor
class	StackToDimensionMerger2Algorithm Wrapper around ImageProcessor
class	StackToDimensionMergerAlgorithm Wrapper around ImageProcessor
class	ZProjectorAlgorithm Wrapper around ZProjector

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.edge

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.edge with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	CannyEdgeDetectorAlgorithm This is the JIPipe version of the ImageJ plugin ...
class	LaplacianEdgeDetectorAlgorithm Wrapper around ImageProcessor
class	SobelEdgeDetectorAlgorithm Wrapper around ImageProcessor

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.features

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.features with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	AlternatingMorphologicalFilters2DAlgorithm
class	DerivativesFeaturesAlgorithm
class	DifferenceOfGaussian2DAlgorithm Wrapper around GaussianBlur
class	DirectionalFilter2DAlgorithm
class	FrangiVesselnessFeatures Applies CLAHE image enhancing
class	LaplacianOfGaussian2DAlgorithm Based on code by Dimiter Prodanov ...
class	LocalMaxima2DAlgorithm Wrapper around MaximumFinder
class	MeijeringVesselness2DFeatures Applies CLAHE image enhancing
class	MorphologicalFeatureContrast2DAlgorithm
class	MorphologicalTextureContrast2DAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.fft

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.fft with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	FFT2DForwardTransform Applies a FFT forward transformation
class	FFT2DInverseTransform Applies a FFT forward transformation
class	FFT2DSwapQuadrants Applies a FFT forward transformation
class	FFTBandPassFilter
class	FFTCustomFilter

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.forms

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.forms with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	DrawMaskAlgorithm
class	DrawROIAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.generate

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.generate with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	GenerateLUTImageFromColorMap Wrapper around ImageProcessor
class	GenerateMissingImageFromMathExpression2D Wrapper around ImageProcessor
class	GenerateMissingTablesAlgorithm Deprecated.
class	GenerateMissingTablesAlgorithm2
class	GenerateMissingZeroImage Wrapper around ImageProcessor
class	GenerateStructureElement2DAlgorithm Wrapper around ImageProcessor
class	GenerateStructureElement3DAlgorithm Wrapper around ImageProcessor
class	GenerateZeroImage Wrapper around ImageProcessor
class	ImageFromMatrix2DAlgorithm Wrapper around Convolver

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.io

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.io with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ExportImage2Algorithm
class	ExportImageAlgorithm Deprecated.
class	ExportImageDirectorySlotAlgorithm
class	ExportROIAlgorithm Deprecated.
class	ExportROIAlgorithm2
class	ExportTableAlgorithm Deprecated.
class	ExportTableAlgorithm2
class	ExportTableAsXLSXAlgorithm Deprecated.
class	ExportTableAsXLSXAlgorithm2
class	ImagePlusFromGUI Imports ImagePlusData from the GUI
class	ImagePlusToGUI Imports ImagePlusData from the GUI
class	ResultsTableFromGUI Imports ImagePlusData from the GUI
class	ResultsTableToGUI Imports ImagePlusData from the GUI
class	ROIFromGUI Imports ImagePlusData from the GUI
class	ROIToGUI Imports ImagePlusData from the GUI
class	RunImageJImporterAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.labels

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.labels with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	CropLabelsAlgorithm
class	DilateLabelsAlgorithm
class	ExpandLabelsAlgorithm
class	ExtractLabelStatisticsAlgorithm
class	GetLabelBoundariesAlgorithm
class	KeepLargestLabelAlgorithm
class	LabelsToMaskAlgorithm
class	LabelsToRGBAlgorithm
class	LabelsToROIAlgorithm
class	MergeLabelsAlgorithm
class	MergeLabelsToBinsAlgorithm
class	MergeLabelsToThicknessAlgorithm
class	MergeSmallLabelsAlgorithm
class	RemapLabelsAlgorithm
class	ReplaceLabelsAlgorithm
class	ReplaceLabelsByTableAlgorithm
class	SeparateLabelsAlgorithm
class	SplitLabelsConnectedComponents2DAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.labels.filter

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.labels.filter with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	FilterLabelsByExpression2DAlgorithm
class	FilterLabelsByExpression3DAlgorithm
class	FilterLabelsByIdAlgorithm
class	FilterLabelsByMaskAlgorithm
class	FilterLabelsByStatisticsAlgorithm Wrapper around RoiManager
class	FilterLabelsByThicknessAlgorithm
class	RemoveBorderLabelsAlgorithm
class	RemoveLargestLabelAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.lut

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.lut with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ApplyLUTAlgorithm
class	LUTInverterAlgorithm
class	RemoveLUTAlgorithm
class	SetLUTFromColorMapAlgorithm
class	SetLUTFromColorsAlgorithm
class	SetLUTFromImageAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.masking

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.masking with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	SetToColorAlgorithm
class	SetToContentAwareAlgorithm
class	SetToValueAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.math

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.math with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ApplyColorMathExpression2DExpression
class	ApplyMathExpression2DAlgorithm Wrapper around ImageProcessor
class	ApplyTransform2DAlgorithm Wrapper around ImageProcessor
class	ApplyVectorMathExpression2DAlgorithm Wrapper around ImageProcessor
class	DivideByMaximumAlgorithm Wrapper around ImageProcessor
class	FastImageArithmeticsAlgorithm
class	GenerateFromMathExpression2D Wrapper around ImageProcessor
class	GenerateVectorFromMathExpression Wrapper around ImageProcessor
class	Hessian2DAlgorithm Deprecated.
class	ImageCalculator2DExpression
class	ImageComparer2DAlgorithm Deprecated.
class	LegacyApplyMath2DAlgorithm Deprecated.
class	LegacyImageCalculator2DAlgorithm Deprecated.
class	LegacyImageCalculator2DMergingAlgorithm Deprecated.
class	RemoveNaNFilter2DAlgorithm Wrapper around RankFilters
class	RoundFloatImageAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.math.distancemap

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.math.distancemap with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ApplyDistanceTransform2DAlgorithm Wrapper around EDM
class	ChamferDistanceMap2DAlgorithm
class	ChamferDistanceMap3DAlgorithm
class	GeodesicDistanceMap2DAlgorithm
class	LabelChamferDistanceMap3DAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.math.local

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.math.local with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ExtendedMaxima2DAlgorithm
class	ExtendedMaxima3DAlgorithm
class	ExtendedMinima2DAlgorithm
class	ExtendedMinima3DAlgorithm
class	ImposeMaxima2DAlgorithm
class	ImposeMaxima3DAlgorithm
class	LocalImageCalculator2DExpression
class	LocalMaximumFilter2DAlgorithm Wrapper around RankFilters
class	LocalMaximumFilter3DAlgorithm Wrapper around RankFilters
class	LocalMinimumFilter2DAlgorithm Wrapper around RankFilters
class	LocalMinimumFilter3DAlgorithm Wrapper around RankFilters
class	LocalVarianceFilter2DAlgorithm Wrapper around RankFilters
class	LocalVarianceFilter3DAlgorithm Wrapper around RankFilters
class	RegionalMaxima2DAlgorithm
class	RegionalMaxima3DAlgorithm
class	RegionalMinima2DAlgorithm
class	RegionalMinima3DAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.metadata

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.metadata with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ChangeImageMetadataFromExpressionsAlgorithm Wrapper around RoiManager
class	ExtractImageMetadataAlgorithm
class	RemoveImageMetadataAlgorithm
class	SetImageMetadataFromTableAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.misc

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.misc with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	DataToPreviewAlgorithm
class	RenderJIPipeProjectAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.montage

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.montage with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	InputImagesToMontage Deprecated.
class	InputImagesToMontage2
class	MontageToStackAlgorithm Implementation of MontageMaker
class	StackToMontage2Algorithm Implementation of MontageMaker
class	StackToMontageAlgorithm Deprecated.

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.morphology

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.morphology with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	FindHoles2DAlgorithm
class	GrayscaleAttributeFiltering2DAlgorithm
class	GrayscaleAttributeFiltering3DAlgorithm
class	MorphologicalReconstruction2DAlgorithm
class	MorphologicalReconstruction3DAlgorithm
class	Morphology2DAlgorithm Wrapper around ImageProcessor
class	Morphology3DAlgorithm Wrapper around ImageProcessor
class	MorphologyBinary2DAlgorithm Wrapper around ImageProcessor
class	MorphologyFillHoles2DAlgorithm Wrapper around ImageProcessor
class	MorphologyInternalGradient2DAlgorithm Wrapper around ImageProcessor
class	MorphologyOutline2DAlgorithm Wrapper around ImageProcessor
class	MorphologySkeletonize2DAlgorithm Wrapper around ImageProcessor
class	MorphologySkeletonize3DAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.noise

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.noise with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	AddNoise2DAlgorithm Wrapper around ImageProcessor
class	AddSaltAndPepperNoise2DAlgorithm Wrapper around ImageProcessor
class	DespeckleFilter2DAlgorithm Wrapper around RankFilters
class	RemoveOutliersFilter2DAlgorithm Wrapper around RankFilters

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.ome

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.ome with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	AnnotateOMEWithMetadataAlgorithm
class	ExtractOMEROIAlgorithm
class	ExtractOMEXMLAlgorithm
class	OMEMetadataToTableAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.opticalflow

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.opticalflow with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	MSEBlockFlowAlgorithm Adapted from mpicbg.ij.plugin.MSEBlockFlow, as the methods there are all protected/private
class	MSEGaussianFlowAlgorithm Adapted from mpicbg.ij.plugin.MSEGaussianFlow, as the methods there are all protected/private
class	PMCCBlockFlowAlgorithm Adapted from mpicbg.ij.plugin.PMCCBlockFlow, as the methods there are all protected/private

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.overlay

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.overlay with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ExtractOverlayAlgorithm
class	RemoveOverlayAlgorithm
class	RenderOverlayAlgorithm Wrapper around RoiDrawer
class	SetOverlayAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	CropToRoiAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.annotations

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.annotations with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	RoiPropertiesToAnnotationsAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.assemble

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.assemble with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	AssembleExtractedROIAlgorithm
class	ExtractFromROIAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.convert

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.convert with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ExtractImageInRoiAlgorithm
class	GetRoiImageAlgorithm Wrapper around RoiManager
class	ROIToLabelsByNameAlgorithm
class	ROIToLabelsExpressionAlgorithm
class	RoiToMaskAlgorithm Wrapper around RoiManager
class	RoiToRGBAlgorithm Wrapper around RoiDrawer
class	UnreferencedRoiToMaskAlgorithm Wrapper around RoiManager
class	UnreferencedRoiToRGBAlgorithm Wrapper around RoiManager

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.draw

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.draw with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	DrawLineOvalRectangleRoiAlgorithm
class	DrawOvalRoiAlgorithm Deprecated.
class	DrawRectangleRoiAlgorithm Deprecated.
class	DrawScaleBarRoiAlgorithm
class	DrawTextRoiAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.filter

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.filter with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	FilterRoiByNameAlgorithm Wrapper around RoiManager
class	FilterRoiByStatisticsAlgorithm Wrapper around RoiManager
class	FilterRoiByStatisticsScriptAlgorithm Wrapper around RoiManager
class	FilterROIListsAlgorithm
class	RemoveBorderRoisAlgorithm Wrapper around RoiManager
class	SliceROIListAlgorithm Wrapper around RoiManager

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.generate

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.generate with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	AppendRectangularRoiAlgorithm Deprecated.
class	DefineRectangularRoiAlgorithm Deprecated.
class	GenerateMissingRoiListsAlgorithm
class	MaskToRoiAlgorithm
class	ReferencedAppendRectangularRoiAlgorithm Deprecated.
class	ReferencedDefineRectangularRoiAlgorithm Deprecated.
class	TableToCircularROIAlgorithm Wrapper around RoiManager
class	TableToLineROIAlgorithm Wrapper around RoiManager
class	TableToPointROIAlgorithm Wrapper around RoiManager
class	TableToRectangularROIAlgorithm Wrapper around RoiManager
class	TableToTextROIAlgorithm Wrapper around RoiManager

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.measure

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.measure with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	CountROIAlgorithm
class	ExtractRoi2DRelationStatisticsAlgorithm
class	ExtractROIProfileAlgorithm
class	RoiStatisticsAlgorithm Wrapper around RoiManager

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.merge

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.merge with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	FilterAndMergeRoiByStatisticsScriptAlgorithm Wrapper around RoiManager
class	MergeRoiListsOrderedAlgorithm Wrapper around RoiManager
class	MergeRoiListsPairwiseOrAlgorithm Wrapper around RoiManager
class	MergeRoiListsUnorderedAlgorithm Wrapper around RoiManager

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.modify

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.modify with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm
class	ChangeRoiPropertiesAlgorithm Wrapper around RoiManager
class	ChangeRoiPropertiesFromAnnotationsAlgorithm Wrapper around RoiManager
class	ChangeRoiPropertiesFromExpressionsAlgorithm Wrapper around RoiManager
class	ChangeRoiPropertiesFromTableAlgorithm Wrapper around RoiManager
class	ColorRoiByNameAlgorithm
class	ColorRoiByStatisticsAlgorithm Wrapper around RoiManager
class	CropRoiListAlgorithm Wrapper around RoiManager
class	EnlargeShrinkRoiAlgorithm Wrapper around RoiManager
class	FlattenRoiAlgorithm Wrapper around RoiManager
class	OutlineRoiAlgorithm Wrapper around RoiManager
class	OutlineRoiConcaveHullMoreiraSantosAlgorithm
class	ReorderRoiDimensionsAlgorithm Algorithm that reorders Hyperstack dimensions
class	RoiCalculatorAlgorithm Wrapper around RoiManager
class	RoiFloodFillAlgorithm Wrapper around RoiManager
class	RoiToCentroidAlgorithm Wrapper around RoiManager
class	RotateRoiAlgorithm Wrapper around RoiManager
class	ScaleRoiAlgorithm Wrapper around RoiManager
class	SetRoiImageAlgorithm Wrapper around RoiManager
class	UnsetRoiImageAlgorithm Wrapper around RoiManager

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.properties

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.properties with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ExtractROIMetadataAlgorithm
class	RemoveROIMetadataAlgorithm
class	SetRoiMetadataByStatisticsAlgorithm Wrapper around RoiManager
class	SetROIMetadataFromTableAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.register

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.register with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	RegisterRoiToImageByBrightnessAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.sort

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.sort with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	SortAndExtractRoiByStatisticsAlgorithm Deprecated.
class	SortAndExtractRoiByStatisticsAlgorithm2 Wrapper around RoiManager
class	SortRoiListByExpressionsAndMeasurementsAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.split

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.split with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ExplodeRoiAlgorithm Wrapper around RoiManager
class	SplitRoiAlgorithm Wrapper around RoiManager
class	SplitRoiConnectedComponentsAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.segment

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.segment with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ClassicWatershedSegmentationAlgorithm
class	SeededWatershedSegmentationAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.sharpen

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.sharpen with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	LaplacianSharpen2DAlgorithm Wrapper around ImageProcessor

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.statistics

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.statistics with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	AverageKeyValueThresholdStatisticsGenerator
class	FastKeyValueThresholdStatisticsGenerator
class	HistogramGenerator Algorithm that generates ResultsTableData as histogram
class	KeyValueAveragesGenerator
class	KeyValueHistogramGenerator
class	KeyValueThresholdPartitionAveragesGenerator
class	KeyValueThresholdPartitionGenerator
class	KeyValueThresholdStatisticsGenerator

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.threshold

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.threshold with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	AutoThreshold2DAlgorithm Thresholding node that thresholds via an auto threshold
class	BrightSpotsSegmentation2DAlgorithm Applies Bright spots segmentation
class	CustomAutoThreshold2D16UAlgorithm Thresholding node that thresholds via an auto threshold
class	CustomAutoThreshold2D16Uv2Algorithm Thresholding node that thresholds via an auto threshold
class	CustomAutoThreshold2D32FAlgorithm Thresholding node that thresholds via an auto threshold
class	CustomAutoThreshold2D32Fv2Algorithm Thresholding node that thresholds via an auto threshold
class	CustomAutoThreshold2D8UAlgorithm Thresholding node that thresholds via an auto threshold
class	CustomAutoThreshold2D8Uv2Algorithm Thresholding node that thresholds via an auto threshold
class	HessianSegmentation2DAlgorithm Segments using a Hessian
class	InternalGradientSegmentation2DAlgorithm Internal gradient segmenter
class	ManualThreshold16U2DAlgorithm Wrapper around ImageProcessor
class	ManualThreshold32F2DAlgorithm Wrapper around ImageProcessor
class	ManualThreshold8U2DAlgorithm Wrapper around ImageProcessor
class	PercentileThreshold8U2DAlgorithm Wrapper around ImageProcessor
class	ThresholdByAnnotation2DAlgorithm Wrapper around ImageProcessor

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.threshold.color

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.threshold.color with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ColorThresholdExpression2D
class	ManualHSBThreshold2DAlgorithm
class	ManualLABThreshold2DAlgorithm
class	ManualRGBThreshold2DAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.threshold.local

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.threshold.local with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	BernsenLocalAutoThreshold2DAlgorithm Segmenter node that thresholds via an auto threshold Based on code from fiji.threshold.Auto_Local_Threshold
class	ContrastLocalAutoThreshold2DAlgorithm Segmenter node that thresholds via an auto threshold Based on code from fiji.threshold.Auto_Local_Threshold
class	LocalAutoThreshold2DAlgorithm Segmenter node that thresholds via an auto threshold Based on code from fiji.threshold.Auto_Local_Threshold
class	NiblackLocalAutoThreshold2DAlgorithm Segmenter node that thresholds via an auto threshold Based on code from fiji.threshold.Auto_Local_Threshold
class	PhansalkarLocalAutoThreshold2DAlgorithm Segmenter node that thresholds via an auto threshold Based on code from fiji.threshold.Auto_Local_Threshold
class	SauvolaLocalAutoThreshold2DAlgorithm Segmenter node that thresholds via an auto threshold Based on code from fiji.threshold.Auto_Local_Threshold

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.transform

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.transform with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	AddBorder2DAlgorithm
class	LineMirror2DFromExpressionsAlgorithm
class	LineMirror2DFromRoiAlgorithm
class	MergeImagesAlgorithm
class	TileImage2DAlgorithm Deprecated.
class	TileImage2Dv2Algorithm
class	TransformCrop2DAlgorithm Wrapper around ImageProcessor
class	TransformEqualCanvasSize2DAlgorithm
class	TransformEqualizeDimensionsAlgorithm
class	TransformEqualizeDimensionsToMaxAlgorithm
class	TransformExpandCanvas2DAlgorithm
class	TransformFlip2DAlgorithm Wrapper around ImageProcessor
class	TransformRotate2DAlgorithm Wrapper around ImageProcessor
class	TransformScale2DAlgorithm Wrapper around ImageProcessor
class	TransformScale3DAlgorithm Wrapper around ImageProcessor
class	TransformSetHyperstackDimensionsAlgorithm
class	UnTileImage2DAlgorithm
class	Warp2DAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejdatatypes.algorithms

Classes in org.hkijena.jipipe.plugins.imagejdatatypes.algorithms with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ApplyDisplayContrastAlgorithm
class	DisplayRangeCalibrationAlgorithm
class	ExtractRoi2DFromOMEImageAlgorithm Loads ROI data from a file via IJ.openFile()
class	SetBioFormatsExporterSettings

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejdatatypes.algorithms.annotate

Classes in org.hkijena.jipipe.plugins.imagejdatatypes.algorithms.annotate with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	AnnotateDataWithImagePropertiesAlgorithm Adds data annotations that contain the image properties
class	BioFormatsAnnotatorAlgorithm BioFormats importer wrapper
class	ImagePropertiesToAnnotationAlgorithm Adds data annotations that contain the image properties

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejdatatypes.algorithms.color

Classes in org.hkijena.jipipe.plugins.imagejdatatypes.algorithms.color with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ToHSBColorSpaceConverterAlgorithm
class	ToLABColorSpaceConverterAlgorithm
class	ToRGBColorSpaceConverterAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejdatatypes.algorithms.io

Classes in org.hkijena.jipipe.plugins.imagejdatatypes.algorithms.io with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	BioFormatsExporter2Algorithm
class	BioFormatsExporterAlgorithm Deprecated.
class	BioFormatsImporterAlgorithm BioFormats importer wrapper
class	ExportImagePlusAsOMEZARRAlgorithm
class	ImportImageJSampleAlgorithm
class	ImportImagePlusAlgorithm Loads an image data from a file via IJ.openFile()
class	ImportLUTAsRGBFromFileAlgorithm
class	ImportOMEZARRFromURIAsImagePlusAlgorithm
class	ImportOMEZARRFromZipDirectoryAsImagePlusAlgorithm
class	ImportResultsTableAlgorithm Imports ResultsTableData from a file
class	ImportRoi2DAlgorithm Loads ROI data from a file via IJ.openFile()

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imagejdatatypes.converters

Classes in org.hkijena.jipipe.plugins.imagejdatatypes.converters with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ImageTypeConverter Converts ImageJ data type into each other

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.imp.nodes

Classes in org.hkijena.jipipe.plugins.imp.nodes with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ConvertImpImageToImagePlusAlgorithm
class	ExportImpImageAlgorithm
class	ImportImpImageAlgorithm
class	SetImpAlphaChannelAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.multiparameters.nodes

Classes in org.hkijena.jipipe.plugins.multiparameters.nodes with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	AnnotationsToParametersAlgorithm
class	ConvertParametersToTableAlgorithm
class	DefineParametersAlgorithm Generates ParametersData objects
class	DefineParametersFromGlobalParametersAlgorithm Generates ParametersData objects
class	DefineParametersFromTableAlgorithm
class	DefineParametersTableAlgorithm Generates ParametersData objects
class	ExtractParametersAlgorithm
class	GenerateParametersFromExpressionAlgorithm
class	MergeParametersAlgorithm
class	MultiplyParametersAlgorithm
class	ParametersToAnnotationsAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.omero.nodes.annotate

Classes in org.hkijena.jipipe.plugins.omero.nodes.annotate with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	AnnotateOMERODatasetReferenceAlgorithm
class	AnnotateOMEROImageReferenceAlgorithm
class	AnnotateOMEROPlateReferenceAlgorithm
class	AnnotateOMEROProjectReferenceAlgorithm
class	AnnotateOMEROScreenReferenceAlgorithm
class	AnnotateOMEROWellReferenceAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.omero.nodes.datasources

Classes in org.hkijena.jipipe.plugins.omero.nodes.datasources with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	OMERODatasetReferenceDataSource
class	OMEROGroupReferenceDataSource
class	OMEROImageReferenceDataSource
class	OMEROPlateReferenceDataSource
class	OMEROProjectReferenceDataSource
class	OMEROScreenReferenceDataSource
class	OMEROWellReferenceDataSource

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.omero.nodes.download

Classes in org.hkijena.jipipe.plugins.omero.nodes.download with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	DownloadOMEROImageAlgorithm
class	DownloadOMEROTableAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.omero.nodes.manage

Classes in org.hkijena.jipipe.plugins.omero.nodes.manage with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	OMEROCreateDatasetAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.omero.nodes.navigate

Classes in org.hkijena.jipipe.plugins.omero.nodes.navigate with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	OMEROListDatasetImagesAlgorithm
class	OMEROListDatasetsAlgorithm
class	OMEROListGroupsAlgorithm
class	OMEROListPlatesAlgorithm
class	OMEROListProjectsAlgorithm
class	OMEROListScreensAlgorithm
class	OMEROListWellImagesAlgorithm
class	OMEROListWellsAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.omero.nodes.upload

Classes in org.hkijena.jipipe.plugins.omero.nodes.upload with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	UploadOMEROImageToDatasetAlgorithm
class	UploadOMEROTableAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.omnipose.algorithms

Classes in org.hkijena.jipipe.plugins.omnipose.algorithms with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ImportPretrainedOmnipose0ModelAlgorithm
class	Omnipose0TrainingAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.omnipose.legacy.algorithms

Classes in org.hkijena.jipipe.plugins.omnipose.legacy.algorithms with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	LegacyOmnipose0TrainingAlgorithm Deprecated.

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.opencv.nodes

Classes in org.hkijena.jipipe.plugins.opencv.nodes with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ConvertDepthAlgorithm
class	ConvertTypeAlgorithm
class	InpaintingAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.opencv.nodes.filters

Classes in org.hkijena.jipipe.plugins.opencv.nodes.filters with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	BilateralFilterAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.opencv.nodes.generators

Classes in org.hkijena.jipipe.plugins.opencv.nodes.generators with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	GaborKernelGenerator
class	GaussianKernelGenerator

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.plots.nodes

Classes in org.hkijena.jipipe.plugins.plots.nodes with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	PlotTablesAlgorithm Deprecated. Instead, the new dynamically generated plotting should be utilized

Methods in org.hkijena.jipipe.plugins.plots.nodes that return types with arguments of type AddJIPipeOutputSlot

Modifier and Type	Method and Description
List<AddJIPipeOutputSlot>	PlotTables2AlgorithmInfo.getOutputSlots()

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.r.algorithms

Classes in org.hkijena.jipipe.plugins.r.algorithms with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ImportRDatasetAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.scene3d.nodes

Classes in org.hkijena.jipipe.plugins.scene3d.nodes with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	CreateLineMeshAlgorithm
class	CreateSphereMeshAlgorithm
class	ExportScene3DToColladaAlgorithm Deprecated.
class	ExportScene3DToColladaAlgorithm2
class	GroupSceneAlgorithm
class	MaskTo3DMeshAlgorithm
class	MergeScenesAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.strings.datasources

Classes in org.hkijena.jipipe.plugins.strings.datasources with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ImportJsonAlgorithm
class	ImportStringAlgorithm
class	ImportXMLAlgorithm
class	StringDefinitionDataSource

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.strings.nodes.json

Classes in org.hkijena.jipipe.plugins.strings.nodes.json with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	AnnotateWithJsonDataAlgorithm
class	ExtractJsonDataAsTableAlgorithm
class	ExtractTextFromJsonAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.strings.nodes.text

Classes in org.hkijena.jipipe.plugins.strings.nodes.text with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	AnnotateWithTextDataAlgorithm
class	ProcessTextDataAlgorithm
class	TableToCSVTextAlgorithm
class	TextDataToTableAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.strings.nodes.xml

Classes in org.hkijena.jipipe.plugins.strings.nodes.xml with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	AnnotateWithXPathDataAlgorithm
class	ExtractTextFromXMLAlgorithm
class	ExtractXPathDataAsTableAlgorithm
class	PrettifyXMLAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.tables.nodes

Classes in org.hkijena.jipipe.plugins.tables.nodes with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	DefineTablesAlgorithm Algorithm that annotates all data with the same annotation
class	GenerateColumnAlgorithm Algorithm that adds or replaces a column by a generated value
class	GenerateTableFromExpressionAlgorithm Algorithm that adds or replaces a column by a generated value
class	IntegrateColumnsAlgorithm Algorithm that integrates columns
class	ModifyAndMergeTablesScript Algorithm that annotates all data with the same annotation
class	ModifyTableColumnNamesAlgorithm
class	ModifyTablesScript Algorithm that annotates all data with the same annotation
class	TablesFromScript Algorithm that annotates all data with the same annotation

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.tables.nodes.annotations

Classes in org.hkijena.jipipe.plugins.tables.nodes.annotations with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	AddAnnotationColumnsAlgorithm Algorithm that integrates columns
class	AnnotateByTablePropertiesAlgorithm
class	AnnotateDataWithTableValues
class	ConvertAnnotationTableToAnnotatedTables Algorithm that integrates columns

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.tables.nodes.columns

Classes in org.hkijena.jipipe.plugins.tables.nodes.columns with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ApplyExpressionToColumnsAlgorithm Deprecated.
class	ApplyExpressionToTableByColumnAlgorithm Algorithm that integrates columns
class	ColumnsToAnnotationsAlgorithm
class	ColumnToNumericAlgorithm Algorithm that removes columns
class	ColumnToStringAlgorithm Algorithm that removes columns
class	ConvertColumnsAlgorithm Algorithm that integrates columns
class	RemoveColumnAlgorithm Algorithm that removes columns
class	RenameSingleColumnsAlgorithm Algorithm that removes columns
class	RenameTableColumns2Algorithm Algorithm that removes columns
class	RenameTableColumnsAlgorithm Deprecated.
class	RenameTableColumnsToAnnotationAlgorithm Algorithm that removes columns
class	SortTableColumnsAlgorithm Algorithm that integrates columns

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.tables.nodes.filter

Classes in org.hkijena.jipipe.plugins.tables.nodes.filter with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	FilterTableRowsAlgorithm Algorithm that integrates columns
class	FilterTablesAlgorithm Algorithm that integrates columns
class	SliceTableRowsAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.tables.nodes.merge

Classes in org.hkijena.jipipe.plugins.tables.nodes.merge with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	MergeColumnsAlgorithm Algorithm that integrates columns
class	MergeTableColumnsSimpleAlgorithm Algorithm that integrates columns
class	MergeTableColumnsSupplementAlgorithm Algorithm that integrates columns
class	MergeTableColumnsSupplementMergingAlgorithm Algorithm that integrates columns
class	MergeTableRowsAlgorithm Algorithm that integrates columns

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.tables.nodes.rows

Classes in org.hkijena.jipipe.plugins.tables.nodes.rows with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	AddMissingRowsInSeriesAlgorithm
class	ApplyExpressionPerRowAlgorithm Deprecated.
class	ApplyExpressionPerRowAlgorithm2
class	SortTableRowsAlgorithm Algorithm that integrates columns

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.tables.nodes.split

Classes in org.hkijena.jipipe.plugins.tables.nodes.split with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	SplitTableByColumnsAlgorithm Algorithm that integrates columns
class	SplitTableIntoColumnsAlgorithm Algorithm that integrates columns
class	SplitTableIntoRowsAlgorithm Algorithm that integrates columns

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.tables.nodes.transform

Classes in org.hkijena.jipipe.plugins.tables.nodes.transform with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	ApplyExpressionPerLabelAlgorithm
class	MeltTableAlgorithm Algorithm that integrates columns
class	TableToHistogram2Algorithm
class	TableToHistogramAlgorithm Deprecated.
class	UnMeltTableAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.utils.algorithms

Classes in org.hkijena.jipipe.plugins.utils.algorithms with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	DataSlicer
class	DuplicateDataAlgorithm
class	ImportJIPipeSlotFolderAlgorithm
class	IterationStepSlicer
class	RunExpressionAlgorithm
class	SelectDataTableRowsAlgorithm
class	SleepAlgorithm
class	SortRowsByAnnotationsAlgorithm
class	SortRowsByExpressionAlgorithm
class	ToDataStringAlgorithm
class	UsePlaceholderForMissingDataAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.utils.algorithms.datatable

Classes in org.hkijena.jipipe.plugins.utils.algorithms.datatable with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	AnnotateWithDataTableProperties
class	ExtractTableAlgorithm
class	MergeDataToTableAlgorithm
class	PullDataTableAnnotations
class	PushDataTableAnnotations

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.utils.algorithms.distribute

Classes in org.hkijena.jipipe.plugins.utils.algorithms.distribute with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	DistributeDataRandomlyByCountAlgorithm
class	DistributeDataRandomlyByPercentageAlgorithm

Uses of AddJIPipeOutputSlot in org.hkijena.jipipe.plugins.utils.algorithms.meta

Classes in org.hkijena.jipipe.plugins.utils.algorithms.meta with annotations of type AddJIPipeOutputSlot

Modifier and Type	Class and Description
class	GetJIPipeSlotFolderAlgorithm
class	JIPipeProjectParameterDefinition
class	PathsToJIPipeProjectParametersAlgorithm
class	RunJIPipeProjectAlgorithm Runs a JIPipe project